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Practical Information
Special Issue
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Programme
Poster presentations
Exhibitors
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2003 Congress Poster Presentations
Protein/peptide separation
P1
A. Lamanda
New Ruthenium II tris (bathophenantroline disulfonate) staining and destaining protocol for better signal to background ratio and improved baseline resolution
P2
I. Dragan
The Impact of Monolithic Capillary Columns in LC/MS Proteomics
P3
J Chervet
Parallel Capillary/Nano LC for High-Throughput MS Proteomics
P4
I. Dragan
Monolithic Capillary Columns for Fast Protein/Peptide Separations
P5
G. Mitulovic
Comprehensive 2D Capillary/Nano LC/MS for Complex Proteomics
P6
A. Lamanda
New Ruthenium II tris (bathophenantroline disulfonate) staining and destaining protocol part II: additional procedures
P7
B. Ringel
Free-flow Electrophoresis in Combination with HPLC and Gel-Electrophoresis for Depletion of Albumins and Enrichment of Low-abundant Proteins for Proteome Analysis
P8
V. Tschäppät
Application of 2D LC-MS for the analysis of C. elegans proteins
P9
A. Wallace
An investigation into the combination of off-line strong cation exchange (SCX) chomatography in combination with LC-MS/MS for the analysis of complex protein digest samples on a hybrid quadrupole orthogonal acceleration time-of flight (Q-Tof) mass spectrometer
P10
G. Cameron
Fully Automated 2-Dimensional Electrophoresis
P11
G. Cameron
A platform technology for systematic, automated and high throughput protein expression and purification from NextGen Sciences
P12
M.C. Pietrogrande
Decoding of spot overlapping in 2-D PAGE maps: relevance to proteomics
P13
J. Fritsche
The ProteoExtractª Albumin/IgG Removal Kit: A highly efficient sample preparation method for body fuid proteome analysis
P14
P. Michel
Fractionation of Human Plasma in Presence of Albumin by Off-Gel Isolectric Focusing



Protein Characterisation
P15
J. Hering
Towards developing a multi-laboratory protein FTIR spectral database for improved protein secondary structure quantification
P16
A. Staes
Non-gel proteome analysis using methionine-, cysteine- or amino-terminal peptides that sorted by reverse-phase diagonal chromatography
P17
P. Schindler
A search for functional modifications of chromatin proteins
P18
H. Kovarova
The protein patterns of pig oocytes during in vitro maturation
P19
J.-D. Tissot
Proteomics of methylene blue photo-treated plasma followed by removal of the dye by an adsorbent filter
P20
P. Tafelmeyer
Development of a new reporter system for monitoring protein-protein interactions in living cells
P21
C. Tseng
Antioxidant role of human haptoglobin
P22
F. Vuadens
Identification of swiprosin 1 in human lymphocytes
P23
M. Affolter
Analysis of bacterial membrane proteins by combining low resolving SDS-PAGE with high resolving 2D-LC/MSMS
P24
A. Panchoud
Analysis of protein complexes in human milk by multidimensional ManoLC/MSMS
P25
C. Roussel
On-line Electrochemical Tagging of Free Cysteines by Electrogenerated Benzoquinones during Nanospry Ionisation for Mass Spectrometry for Proteomics. Part 1
P26
L. Dayon
On-line Electrochemical Tagging of Cysteines by Electrogenerated Benzoquinones during Nanospray Ionization for Mass Spectrometry for Proteomics. Part 2
P27
G. Walker
Detailed protein map of cytosolic brain extracts from BALB/c-2 mice
P28
A. Oberschall
Purification and mass spectrometric analysis of the Arabidopsis SnRK-proteasome complex
P29
P. Jouin
MALDI-TOF MS quantitative analysis of pre-digestion labelled proteins on lysine residues
P30
D.O.Trubetskoy
Proteomic Analysis Of Proteins Specifically Binding To Potential LTR HERV-K Regulatory Element



Protein function
P31
G. Schmid
Betagranin, a chromogranin A-derived peptide, inhibits insulin secretion
P32
A. Weiss
Intermolecular contact sites in the assembly of massive synthetic elastin superstructures
P33
G. Gutierrez-Sanchez
Identification of proteins from Aspergillus tamarii regulated by caffein using 2-D Fluorescence Difference Gel Electrophoresis and mass spectrometry
P34
F. Santos
The Y2H membrane split ubiquitin system: a novel approach for the detection of plant protein - protein interactions
P35
J. Schumacher
Influence of Different Substances on the Phosphoproteome of Macrophages
P36
S. Encarnacion
Proteomic analysis reveals differential protein expression by Rhizobium etli and Sinorhizobium meliloti during biofilm formation



Mass Spectrometry
P37
J. Niebel
Detection of Noncovalent Protein-Ligand Interactions Using Automated Chip-Based Nanoelectrospray mass Spectrometry
P38
G. Mitulovic
Precise Deposition of Nanoliter Fractions on MALDI Targets
P39
N. Lion
Characterization of native proteins by ESI-MS thanks to a dual-channel microfabricated electrospray emitter
P40
S. Hahner
Interfacing LC to ESI- and MALDI-MS/MS analysis towards high-throughput and high content proteomics
P41
M. Hornshaw
Proteomic analysis of rat brain postsynaptic density
P42
A. Schmidt
A Novel Approach for Quantitative Proteomics – Multiplexed ICPL
P43
E. Varesio
New MS scanning functionalities used in proteomics
P44
A. Siddique
Proteome analysis of BY-2 plastids as a model for undiffentiated hetertrophic plasids
P45
X. Tian
Application of Affinity Proteomics and High Resolution Mass Spectrometry in Elucidation of New Amyloid-derived Vaccine Lead Structures against AlzheimerÕs Disease
P46
E. Witters
Cross species identification and its implications
P47
A. Wallace
An evaluation of multiple strategies for identifying proteins in complex mixtures by Electrospray andMALDI Mass Spectrometry
P48
S. Dudd
Novel sample preparation technology enabling MALDI MS analysis with enhanced sensitivity
P49
S. Dudd
N-terminal modification of tryptic peptides for increasing protein sequence coverage by MALDI/MS
P50
R. Stöcklin
In/Vivo Pharmacokinetic and Metabolic Studies of Peptide Drugs by MS and MS/MS
P51
D. Suckau
T3-Sequencing: a Novel Tool for the Direct Characterization and QC of Intact Proteins



Bioinformatics
P52
H. Thiele
Bioinformatic Solutions for High Throughput Proteomics
P53
Y Liu
New Algorithm for Protein Design
P54
N. Farriol-Mathis
Post-translational modifications and the Swiss-Protein Knowledgebase
P55
M.-C. Blatter
Swiss-Prot: the protein knowledgebase
P56
S. Rey
Computational analysis of bacterial proteomes: subcellular localization predictions and accuracy
P57
P. Rodriguez-Tome
GeneProt Bioinformatics: A platform for proteome annotation
P58
B. Shakhnovich
Quantifying the Structure-Function Uncertainty Principle: A Graph Theoretical Exploration Into the Origins and Limitations of Protein Domain Annotation
P59
E. Gasteiger
Protein identification and characterization tools on the ExPASy proteomics server
P60
A. Zenker
Turning MS Data into Meaningful Biological Information
P61
P.-A. Binz
Why and How? A LIMS in a proteomics research environment
P62
C. Hoogland
SWISS-2DPAGE, 10 years laterÉ
P63
M. Tuloup
Aldente and BioGraph : An improved peptide mass fingerprinting protein identification environment



Biomediacal applications
P64
O. Carrette
Proteomics analysis of the amyloid plaque formation in the cortex of Tg2576 transgenic mice
P65
C. Sarto
Expression of Heat shock protein 27 in renal cell carcinoma
P66
R. Dieckmann
Proteomic analysis of nucleoli from Hodgkin lymphoma cell lines
P67
P. Lescuyer
Identification of potential biomarkers of brain damage in cerebrospinal fluids from deceased patients
P68
J.-D. Tissot
Use of capillary zone electrophoresis (CZE) and of two-dimensional electrophoresis (2-DE) serum analysis in ecaluating patients with post-transplantation lymphoproliferative disease
P69
L. Allard
Discovery of new diagnostic markers of stroke
P70
E. Guillaume
Cystatin C: a putative cerebrospinal fluid biomarker of Creutzfeldt Jakob Disease
P71
A. Castagna
Proteomic Study of Cisplatin Resistance on Cervical Carcinoma cell Lines
P72
S. Campiche
Development of a proteomic biomarker approach to study endocrine disruption in soil invertebrates
P73
V. Malard
Looking for Biomarkers in Uranium Toxicology: HSP90, A Piece of A Signature
P74
M.-A. Reymond
Radioresistance Related Proteins in Human Rectal Cancer
P75
A. Schrattenholz
Differential and Quantitative Protein Pattern Analysis by Radioactive and Stable Isotope labeling
P76
N. Campostrini
Application of proteomics to cancer research
P77
S. Szkanderova
The MOLT-4 cell response to ionizing radiation analyzed by proteomics
P78
T. Grussenmeyer
Proteomics strategies in cardiovascular research, exemplified by the use of human surgery specimen and animal models of heart failure

Other
P79
K. Rose
Proteomics of biofluids: 10, 500 or 2500 ml of pla.ma or serum
P80
F. Wurm
Proteins for proteomics: Transient gene expression from mammalian cells delivers high qulity, fully modified recombinant proteins
P81
A. Lionello
Kinetics Measurements and Simulations of Protein Adsorptionin Microchannels
P82
M. Weijs
A proteomic approach to evaluate the cellular defense mechanisms against oxidative stress in TBY-2 cell suspension cultures
P83
J.-N. Rybak
In vivo proteomics for the discovery of vascular targets
P84
P. Burkhard
The brain variant of angiotensinogen is a CSF-specific protein
P85
N. Remmerie
Dynamics of the proteome through the cell cycle
P86
N. Lion
Creation of a virtual proteomics journal
P87
S. Söhrman
Study of SCG10 regulation in mouse nervous tissue
P88
M. Vargas
Proteome Analysis and Physiological Characterization of OxyR on Free Life and Symbiosis from R.etli
P89
S. Encarnacin
The Heat Shock response in Rhizobeaceae family members and the identification of in vivo substrates of the chaperone DnaK
P90
J. Anders
Reproducible Sample Preparation: A Key Step in Proteome Analysis
P91
Y. Bai
Applications of high resolution Fourier transform- ion-cyclotron resonance mass spectrometry (FT-ICR MS) and Q-trap ms/ms to characterisation of surfactant protein A
P92
C. Rudolph
Membrane adsorbers: Powerful tools for rapid protein purification in single spin columns and multiwell formats
P93
D. Medjahed Towards a System Biology of Cancer
P94 M. Markmann Using In Silico Functional Proteomics for Compound Profiling