Swiss Proteomics Society, 2004 Congress

	Protein/peptide separation
P01	J. Von Hagen	Improved approaches for sample preparation of body fluids to facilitate proteomics analysis
P02	K. Sparbier	Enrichment of glycoproteins and glycopeptides supported by magnetic particles and detected by MALDI-TOF-MS
P03	N. Christmann	Stripping of IgG(s) by Protein G Sepharose Fast Flow®: Investigation of retained non-specific low molecular weight proteins.
P04	J.M-F. Wan	The use of species-specific and strain-specific peptides for the identification of PST-producing strains of Alexandrium minutun and A. tamarense
P05	S. Scheurer	Gel free proteomics for the discovery of markers of pathology
P06	L. Lee	A New Method of Reducing the Concentration Range of Proteins in Serum Using a Combinatorial Library of Solid Phase Ligands
P07	M. Greiner	High throughput replacement for SDS-PAGE analysis of protein samples by electrophoresis on automated microfluidic chip technology
P08	M. Heller	Two stage Off-Gel isoelectric focusing of proteins and peptides applied to human plasma proteome analysis.
P09	J. Burgess	Fractionation and identification of proteins from ante-mortem and post-mortem cerebrospinal fluid using off-gel electrophoresis and mass spectrometry
P10	A. Wallace	INTEGRATING NANOLC/MS IN QUANTITATIVE AND QUALITATIVE PROTEOMICS
P11	A. Wallace	Strategies for the separation and pre-fractionation of protein mixtures prior to LC-MS
P12	S. Sinchaikul	Deglycosylation of Human Serum with Hydrogen Fluoride (HF) For Identifying Deglycosylated Proteome by Proteomic Approach
P13	D. Ambort	Effect of immobilized pH gradient strip length and ampholytes on spot representation in two-dimensional gel electrophoresis
P14	H. Dietmar	IgG Purity Assay Using a New High Resolution SDS Gel

	Protein characterisation & function
P15	A. Mcwhirter	Automated SPR-MS Analysis for the Simultaneous Acquisition of Biospecific Interaction Data and Protein Identification
P16	M. Solioz	Identifcation of a Novel Protein in the Lactococcus lactis Cuprome by a Proteomics Approach
P17	B. Riederer	MAP1B is a cross-linker of several proteins during axonal development.
P18	L. Skultety	MAPPING AND IDENTIFICATION OF MAJOR PROTEINS OF COXIELLA BURNETII BY PEPTIDE MASS FINGERPRINTING
P19	M. Müller	Utility of the Enzymatic Labelling Method for Stable Isotope Incorporation into Protein Digests
P20	J.S. Rossier	Affinity assay in a disposable microchip for sub microL sample volume
P21	E. Bergmüller	Epigenetic relevance of histone modifications in Arabidopsis thaliana
P22	P.I. Haris	CD versus FTIR spectroscopy for advanced protein secondary structure analysis
P23	R. Dennis	Multiplex Detection of Alzheimer’s Disease-related Proteins and Peptides
P24	R. Dennis	Revolutionizing Signal Transduction Assays in Drug Discovery: MSD’s Multiplex Phosphoprotein Assays with Cell Signaling Technology’s Antibodies

	Mass spectrometry
P25	J. Colinge	Highly Parallel 18O Relative Quantitation at Low Concentration by Spiking with Improved Data Processing
P26	N. Lion	Thin chip polymer microsprays for glycoconjugate analysis of Schindler disease patients
P27	E. Guillaume	N-terminal sulfonation to improve protein identification and quantitation in complex mixtures
P28	A. Scherl	Gold coating of non-conductive membranes before Matrix Assisted Laser Desorption Ionization prevents charging effect
P29	A. Vaezzadeh	MATRIX ENHANCED SECONDARY ION MASS SPECTROMETRY (ME-SIMS) AND STIGMATIC IMAGING WITH THE MOLECULAR SCANNER
P30	K. Herick	MALDI-TOF MS Analysis of Proteins by an Enhanced, Rapid Guanidination Procedure
P31	C. Zimmermann	The Molecular Scanner
P32	P. Jouin	DIMAL-K : Differential In Mass Analysis using Labeled-Lysine(K) applied to mice astrocytic secretome
P33	M. Przybylski	AFFINITY-PROTEOMICS AND ANTIBODY-PROTEOMICS BY HIGH RESOLUTION MASS SPECTROMETRY: POWERFUL TOOLS FOR DIRECT ELUCIDATION OF ANTIBODY PARATOPES AND VACCINE LEAD STRUCTURES
P34	W. Bienvenut	Non-retained peptides fraction of RP-LC-MS/MS during shotgun analysis of complex protein mixture digests
P35	G. Hayn	Protein Profiling in the High Mass Range with a New Mass Independent Cryodetector MALDI-TOF Mass Spectrometer
P36	A. Wallace	A PARALLEL APPROACH TO POST SOURCE DECAY MALDI-TOF ANALYSIS
P37	A. Wallace	A NOVEL QUALITATIVE AND QUANTITATIVE LC-MS BASED APPROACH TO PROTEIN PROFILING AND BIOMARKER DISCOVERY
P38	M. Quadroni	Comparative mass spectrometric analysis of complex peptide mixtures using a novel software tool for two-dimensional data visualization
P39	B. Jaccard	Quantitation of low-abundance proteins in complexes and in total lysates.

	Bioinformatics
P40	J. Colinge	Differential Proteomics via Peptide identification Scores and Statistical Tests
P41	J. Colinge	High-Performance MS/MS Scoring Functions Applied to Large Eukaryotic Genome Searches for Small Proteins
P42	T. Kowall	ProtWare: a Proteomics Data Warehouse approach to solve the needle in a haystack problem.
P43	E. Bertrand	A spot filtering tool to facilitate image analysis of 2D gels
P44	F. Roos	QUALSCORE: Screening for unassigned high quality MS/MS spectra
P45	M. Markmann	In-Silico Functional Proteomics: Integrative Data Analysis
P46	P-A. Binz	PHENYX: MANAGE PROTEIN IDENTIFICATION WITH FLEXIBILITY AND PERTINENCE
P47	H. Seker	Developing a non-alignment based approach for identifying predictive features in metal binding proteins
P48	G. Schmidt	Two-Dimensional Gel Electrophoresis Software for Automated Protein Expression Level Change Analysis

	Biomedical applications
P49	M.A. Reymond	Web-based proteomics and transcriptomics data warehouse on gene expression in human colorectal cancer
P50	T. Kondo	Cancer proteomics by gel-based separation method and data-mining technique
P51	J. Nawarak	Proteomics of snake venoms for determination of specific proteins using in snake venoms microarray production for clinical diagnosis
P52	B. Riederer	Thiol-reactive protein labeling of brain proteins with infrared DY-680 and DY-782 maleimides.
P53	C. Pionneau	Membrane proteins from MCF 7 breast cancer cell : extraction with trifluoroethanol (TFE), and comparison of two softwares for protein identification
P54	M. Glocker	Cryodetector-mass spectrometric analysis of plasma proteins enables differentiation of HELLP-patients from healthy women
P55	E. Bertrand	Ocular axial growth control and Proteomics: differential protein expression in an experimental animal model
P56	O. Carrette	The pre-analytical phase and variables affect proteomics data interpretation and validation: Example of the Cystatin C.
P57	A.H. Simonsen	A Novel Panel of CSF Biomarkers for Alzheimer’s Disease: Early Diagnosis and Mechanistic Insights
P58	Z. Hrkal	Proteome analysis of chronic myelogenous leukemia cells K562 subjected to butyrate treatment
P59	T. Grussenmeyer	Proteomic alteration in an animal model for heart failure
P60	C. Saudrais	Proteomics : a tool to study CSF specific proteins ?
P61	T. Preckel	Proteome analysis of human cerebrospinal fluid (CSF) by a combination of HPLC-MS, off-gel isoelectric focusing and depletion
P62	D. Molina	Modifications of the mitochondrial proteome in patients with OXPHOS-deficiencies
P63	M. Templin	Reverse Phase Protein Microarrays - Quantification of MHC molecules in tumor lysates
P64	A. Schaller	Differences in outer membrane protein expression of Moraxella catarrhalis can be used for direct substraintyping by ICM-MS
P65	G. Sawicki	Degradation of Myosin Light Chain In Isolated Rat Hearts Subjected To Ischemia–Reperfusion Injury: A New Intracellular Target for Matrix Metalloproteinase-2
P66	M. Hornshaw	Approaches for Profiling, Identification and Quantification of Putative Biomarkers

	Other
P67	L. Thadikkaran	Proteomics of hTERT-immortalized human T lymphocytes.
P68	N. Lion	Detection of proteins on poly(vinylidene difluoride) membranes by scanning electrochemical microscopy
P69	O. Rossier	Targeted Proteomics on Taste Tissue and Determination of Saliva Total Proteins.
P70	K. Kraiczek	A new breakthrough technology for proteome analysis
P71	P. Matt	Alterations in the proteome of the ascending aorta associated with aortic valve disease
P72	F. Wagner	Low Background Membrane for Fluorescent Protein Detection in Western Blotting
P73	C. Hoogland	SPS' Digest: the Swiss Proteomics Society selection of proteomics articles
P74	F.J. Blanco	Mitochondrial proteomic characterization of the human articular chondrocyte: a novel tool for the study of osteoarthritis.
P75	K. Tomer	Toxicoproteomics in Animal Models of Human Liver Toxicity