Swiss Proteomics Society, 2005 Congress

Monday 5th December
15:00 - 16:00	Registration
	Poster presentations set-up

SESSION I - Opening Lectures
16:00 - 16:15	Welcome note and official addresses Dario Neri, Chairman of the Local Organising Committee Jean-Charles Sanchez, President of the Swiss Proteomics Society Ernst Hafen, President of ETH Zurich

16:15 - 17:15	Invited Lecture 1: The Plasma Proteome: Challenges for Biomarker Discovery and Validation Leigh Anderson, Plasma Proteome Institute, Washington, DC, USA

17:15 - 18:45	Round table discussion: Funding Innovation for the Future

18:45 - 19:30	WELCOME RECEPTION


Tuesday 6th December
8:30 - 9:00	Registration / Coffee

SESSION II - Proteomic Methodologies
Chairman:	Ralph Schlapbach
9:00 - 9:35	Invited Lecture 2: Quantitation of post-translational modifications in proteomics Ole N. Jensen, Department of Biochemistry and Molecular Biology, University of Southern Denmark, Odense, Denmark
9:35 - 10:10	Invited Lecture 3: Beyond Proteomics Renato Zenobi, Laboratory of Organic Chemistry, Swiss Federal Institute of Technology, ETH Zurich, Switzerland
10:10 - 10:25	O-01: High-Performance Peptide Identification Validation Enabled by IEF-RPC-MS/MS Shotgun Proteomics Manfred Heller, University of Bern, Switzerland
10:25 - 10:40	O-02: Automatic DeNovo Detection of Protein Modifications Frank Potthast, Functional Genomics Center Zurich, Uni/ETH Zurich, Switzerland
10:40 - 11:15	COFFEE BREAK

SESSION III - Proteomic Methodologies
Chairman:	Niels Lion
11:15 - 11:50	Invited Lecture 4: Proteome Bioinformatics: Critically Evaluating MS Data Pierre-Alain Binz, Swiss Institute of Bioinformatics & Genebio S.A., Geneva, Switzerland
11:50 - 12:25	Invited Lecture 5: Mass Spectrometry of Intact Protein Complexes from the Cellular Environment Carol Robinson, Chemical Laboratory, Cambridge University, Cambridge, United Kingdom
12:25 - 12:40	O-03: SBEAMS Proteomics � Efficient Management and Analysis of High-Throughput Proteomics Experiments David Shteynberg, Institute for Systems Biology, Seattle, WA, USA
12:40 - 12:55	O-04: Homology-driven proteomics by LC-MS/MS, background filtering, automated de novo sequencing and MS BLAST search Patrice Waridel, Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany

13:00 - 13:30	LUNCH BREAK BUFFET STYLE

13:30 - 15:00	POSTER SESSION I & COFFEE

	Genebio Lecture
14:15 - 14:45	Imagemaster 2D Platinum 6.0, the solution for both 2-DE and DIGE image analyses [abstract] Sonja Voordijk, Product Manager, Genebio, Geneva, Switzerland

SESSION IV - Proteomics in Biology
Chairman:	Wilhelm Gruissem
15:00 - 15:35	Invited Lecture 6: Parallel Proteomic Sequencing: A Major Step Towards Systems Biology Matthias Wilm, EMBL, Bioanalytical Research Group, Heidelberg, Germany
15:35 - 16:10	Invited Lecture 7: The FLYCAT proteome database: reading the information expressed by the Drosophila genome Erich Brunner, Institute of Zoology, University of Zurich, Switzerland
16:10 - 16:45	Invited Lecture 8: Plant proteomics: From functional proteomics to genome annotation Sacha Baginsky, Institute of Plant Sciences, Swiss Federal Institute of Technology Zurich, Switzerland
16:45 - 17:00	O-05: Identification and structure determination of Tyrosine-nitrations in human blood eosinophils using high resolution FTICR- mass spectrometry Alina Petre, Laboratory of Analytical Chemistry and Biopolymer Structure Analysis, University of Konstanz, Germany
17:00 - 17:15	O-06: Specific detection and identification of newly synthesized proteins Manfredo Quadroni, Protein Analysis Facility, University of Lausanne, Epalinges, Switzerland

17:30 - 18:15	SPS General Council Meeting

19:45	GALA DINNER

Wednesday 7th December

SESSION V - Chemical Proteomics
Chairman:	Ruedi Aebersold
9:00 - 9:35	Invited Lecture 9: Activity-based proteomics Benjamin F. Cravatt, The Skaggs Institute for Chemical Biology, Departments of Cell Biology and Chemistry, The Scripps Research Institute, La Jolla, CA, USA
9:35 - 10:10	Invited Lecture 10: New Chemistries and Methods for Quantitative and Structural Proteomic Analyses Michael H. Gelb, Department of Chemistry and Biochemistry, University of Washington, Seattle, USA
10:10 - 10:25	O-07: Identification and relative quantification of membrane proteins by surface biotinylation and two-dimensional peptide mapping Christoph Roesli, Institute of Pharmaceutical Sciences, Department of Chemistry and Applied Biosciences, ETH Zurich, Switzerland
10:25 - 10:40	O-08: Chemical tagging and profiling of lymphocyte plasma membrane glycoproteins by mass spectrometry Bernd Wollscheid, Institute for Systems Biology, Seattle, WA, USA

10:40 - 11:20	COFFEE BREAK

SESSION VI - Chemical Proteomics
Chairman:	Giuliano Elia
11:20 - 11:55	Invited Lecture 11: A Human Protein Atlas for Normal and Cancer Tissue Peter Nilsson, Royal Institute of Technology (KTH), Stockholm, Sweden
11:55 - 12:30	Invited Lecture 12: Protein Chemistry in Living Cells Kai Johnsson, Institute of Chemical Sciences and Engineering, Ecole Polytechnique F�d�rale de Lausanne, Switzerland
12:30 - 12:45	O-09: Myocardial Ischemia-Reperfusion Injury Decreases Levels of a Novel o-Palmitoylated Form of Pyruvate Dehydrogenase (PDH) b, and Triggers Phosphorylation of Two PDHb Isoforms Grzegorz Sawicki, Departments of Pediatrics & Pharmacology, Cardiovascular Research Group, University of Alberta, Edmonton, Alberta, Canada
12:45 - 13:00	O-10: In vivo and ex vivo biotinylation for the discovery of markers for tumor targeting Jascha-Nikolai Rybak, Institute of Pharmaceutical Sciences, ETH Zurich, Switzerland

13:00 - 13:30	LUNCH BREAK BUFFET STYLE

13:30 - 15:00	POSTER SESSION II & COFFEE

	Nonlinear Dynamics Lecture
14:15 - 14:45	SameSpots, Tiger Technology and Cross Technique Analysis: taking proteomics analysis to the next level [abstract] David Bramwell, Head of Research, Nonlinear Dynamics, Newcastle upon Tyne, United Kingdom

SESSION VII - Proteomics in Pharmaceutical Sciences and Medicine
Chairman:	Dario Neri
15:00 - 15:35	Invited Lecture 13: Progress in prion biology Adriano Aguzzi, Institute of Neuropathology, University of Zurich, Switzerland
15:35 - 16:10	Invited Lecture 14: *Characterization of Staphylococcus aureus* Proteins involved in glycopeptide tolerance with mass spectrometric based quantitative methods** Denis Hochstrasser, Clinical Chemistry Laboratory, Geneva University Hospital, Geneva, Switzerland
16:10 - 16:45	Invited Lecture 15: Differential analysis at the end of the pipe: metabonomics and related species Richard Knochenmuss, Novartis Institutes for Biomedical Research, Basel, Switzerland
16:45 - 17:00	O-11: Brain damage protein marker discovery in human post-mortem cerebrospinal fluid Pierre Lescuyer, Biomedical Proteomics Research Group, Department of Structural Biology and Bioinformatics, University of Geneva, Switzerland
17:00 - 17:15	O-12: Changes in the proteome of chronic myelogenous leukemia-derived cells JURL-MK1 subjected to imatinib mesylate treatment Zbyn�k Hrkal, Institute of Hematology and Blood Transfusion, Prague, Czech Republic
17:15 - 17:30	Closing remarks

17:30	FAREWELL COCKTAIL