Swiss Proteomics Society, 2005 Congress

P-01	Wagner-Redeker W.	LTQ Orbitrap – A Breakthrough Mass Spectrometer for Accurate Mass, High Resolution MS and MSn Analysis on a LC Time Scale
P-02	Etteldorf S.	A Multi-Dimensional Separation Strategy for the Identification of Low-abundant Serum Proteins and Utility for Biomarker Discovery.
P-03	Berkelman T.	Detection and quantification of proteins using a novel fluorescent dye
P-04	Rodriguez G.	Free liquid IEF Pre-fractionation in the MicroRotofor©: Improved 2-D Resolution of Low Abundance Proteins in Small Sample Volumes.
P-05	Tafelmeyer P.	Comparative proteome analysis of Mycobacterium ulcerans grown in vitro and isolated from the salivary glands of aquatic insects
P-06	Samuelsson J.	Automated biomarker detection using mass spectrometry data
P-07	Halada P.	Meiotic division of oocytes: Proteomic and phosphoproteomic study
P-08	Assareh A.	Protein profiling of Leishmania Infantum cells grown in normal and drug-induced conditions-A two dimensional gel electerophoresis study
P-09	Lescuyer P.	Prostaglandin D2 Synthase And Its Post-Translational Modifications In Neurological Disorders
P-10	Skalnikova H.	Towards the understanding stem cells populations: the use of proteomic approach
P-11	Skalnikova H.	Using Two-dimensional Liquid Phase Proteome Fractionation to Monitor Protein Fingerprints of cyclin-dependent kinases inhibition in cancer cells.
P-12	Turck N.	UFD1 and GSTP as early blood markers of stroke
P-13	Casado B.	Identification of a protein expression profile for COPD by ESI-Q-ToF mass spectrometry
P-14	Murthy B. S.	Characterization of novel DNA-binding proteins expressed in snake oocyte cDNA library
P-15	Stalder D.	Multidimensional fractionation of plasma proteins with subsequent identification and relative quantification
P-16	Lomas L.	A Novel approach to analysis of the blood proteome utilizing a combinatorial peptide library that concomitantly dilutes high abundance proteins and concentrates low abundance proteins
P-17	Decker J.	Mathematical Techniques for the Classification of Mass Spectra
P-18	Colinge J.	InSilicoSpectro: An open-source library for performing mass spectrometry computations
P-19	Nissum M.	Depletion and fractionation of human plasma using free flow electrophoresis
P-20	Cecconi D.	Proteomic analysis of pancreatic ductal carcinoma cells after combined treatment with gemcitabine and trichostatin A
P-21	Vaezzadeh A. R.	Shotgun IEF improves coverage of Staphylococcus aureus bacterium proteome
P-22	Ambort D.	Sheddomics
P-23	Lane L.	Post-translational modifications in Swiss-Prot : recent developments
P-24	Antonioli P.	Formation of truncated proteins and high-molecular-mass aggregates upon soft illumination of photosynthetic proteins
P-25	Stiburek L.	Assembly of cytochrome c oxidase in cells with SCO2 and SURF1 mutations
P-26	D'Ambrosio C.	Hyperphosphorylation of proteins accociated with Alzheimer’s disease: the case of JNK-interacting protein1
P-27	Ruiz-Romero C.	Mitochondrial Proteomics in Aging Human Articular Chondrocytes
P-28	Deshusses J.	Re-evaluarion of the digestion conditions by trypsin for proteomic study: role of organic solvents
P-29	Bona E.	Proteomic characterization of copper stress responses in Cannabis sativa roots
P-30	Mitchell G.	Proteomic analysis of the effect of corticosteroid treatment on the composition of bovine bronchoalveolar lavage fluid
P-31	Jones K.	An integrated LIMS and bioinformatics pipeline for proteomics and biomarker discovery
P-32	Poux S.	UniProtKB/Swiss-Prot: from the protein sequence to the knowledge
P-33	Lindinger P.	Proteome analysis of HDAC protein complexes
P-34	Pahlich S.	Analysis of Protein Arginine Methylation by Mass Spectrometry: Kinetics and Sequence Preferences of PRMT1 and PRMT3
P-35	Langella O.	The PROTICdb database for 2-DE proteomics
P-36	van Ling R.	Off-line 2D LC Approaches for the Analysis of Intact Proteins followed by Proteolytic Digestion and LC/MS/MS Analysis
P-37	van Ling R.	High Throughput LC/MS/MS Analysis of Protein Digests Using a Parallel Monolithic (PS-DVB) µ-Column Switching Set-up
P-38	Scrivener E.	The Application of Quantum Dots for the Multiplexed Immuno-detection and Quantitation of Proteins from Bacillus subtilis on Blots Using a High Sensitivity, Flexible Imaging System
P-39	Janaky T.	Identification of membrane proteins interacting with aggregated peptides
P-40	Ramus C.	New insights over the chloroplast envelope: targeted transcriptomic and proteomic studies
P-41	Bergmüller E.	Characterization of Histone H2B post-translational modifications in Arabidopsis using mass spectrometry
P-42	Lenèo J.	Proteome analysis of the Francisella tularensis response to iron restriction.
P-43	Pavkova I.	The comparative proteome analysis of membrane proteins of Francisella tularensis LVS cultivated under iron restriction
P-44	Sack R.	Relative Quantification of Isotopic Labeled Proteins by Multiple Reaction Monitoring on a 4000 QTrap
P-45	Janovská S.	Immunoproteomic approach for identification of vaccine candidate antigens of Francisella tularensis LVS and Francisella tularensis ssp. tularensis
P-46	Di Cara A.	ProteoLab, a software to accelerate the analysis and reporting in a proteomics lab
P-47	Proserpio V.	Comparison and evaluation of decyder-tm and image-master platimun softwares in the analysis of renal cell carcinoma by two-dimensional difference in gel electrophoresis
P-48	Walther D.	Powered by Melanie: a general framework for proteome imaging
P-49	Mohanty S.	Reduction of Sample Complexity towards a Complete Proteomic Annotation of Drosophila melanogaster
P-50	Martínez-Gomariz M.	New approches to study yeast surface proteins: Discovering Novel Antifungal Drug Targets And Virulence Factors
P-51	Wallace A.	Label-free quantitative proteomics; LC-MS based methods for monitoring protein expression changes
P-52	Finch J. W.	Design features and performance of a direct-flow nanoscale HPLC system combined with columns packed with sub 2 micron particles
P-53	Wallace A.	How to reduce sample complexity for MALDI analysis: Optimization of off-line LC MALDI analysis.
P-54	Panchaud A.	Direct mass spectrometric validation of the expression of bacterial cell-wall anchored recombinant proteins
P-55	Kennedy M.	Coupling a Travelling Wave Collision Cell with an oa-TOF mass analyzer for enhanced detection of peptide post-translational modifications
P-56	Zhu K.	Rapid and accurate protein sizing, quantitation and analysis using the experion automated electrophoresis system and the experion Pro260 analysis kit
P-57	Ritchie M.	A ‘label free’ quantitative study on the membrane associated proteins of Salmonella enterica: the effects of osmotic stress.
P-58	Gingrich J.	Rapid screening of pI separated protein samples from a microrotofor using the experion automated electrophoresis system
P-59	Kontula L.	Identification of interacting partners to a novel protein of unknown function
P-60	Vissers H.	Serum profiling: The analysis of Therapeutic proteins and diagnostic markers for lysosomal storage disorders by ‘Label Free’ LC-MS
P-61	Grossmann J.	Arabidopsis thaliana Protemics - From proteome to genome
P-62	Sparbier K.	Exploring the binding profiles of ConA, boronic acid and WGA by MALDI-TOF/TOF MS and magnetic particles
P-63	Sawicki G.	Post-Translational Modifications in Myosin Light Chain 1 Resulting From Myocardial Ischemia-Reperfusion Injury
P-64	Baumann S.	Standardization and evaluation of magnetic bead-based urinary proteome profiling with MALDI-TOF-MS for the detection of new biomarkers
P-65	Köhler K.	Proteomic analysis of starvation-induced autophagy in the Drosophila fat body
P-66	Pitarch A.	Proteomics and Bioinformatics present Novel Diagnostic, Prognostic and Therapeutic Candidates for Systemic Candidiasis
P-67	Grossmann J.	MassVista: a tool to visualize mass spectrometry data
P-68	Ahrens C.	Bioinformatic and statistical data analysis as a driver to fine-tune experimental strategies for high-throughput shotgun proteomics
P-69	Rutishauser D.	Identification of Co-Immunoprecipitated Proteins using C-terminally Tagged Prion Protein and Mass Spectrometry
P-70	Rutishauser D.	Sensitive Quantification of PrPSc using Standard Peptides and Mass Spectrometry
P-71	Rutishauser D.	Analysis of Immune Peptides in the Social Insect, B.terrestis
P-72	Lion N.	Evaluation of mass spectrometric front-end technologies to increase the number of unique peptides in shotgun proteome profiling
P-73	Escola J.-M.	Using proteomics approaches to study the inhibitory mechanism of PSC-RANTES
P-74	Heitner J. C.	Differentiation of HELLP-patients from healthy pregnant women by proteome analysis – On the way towards a clinical marker
P-75	McNally R.	Sociomics: Upon opening the 'Black Box' of proteomics & finding ourselves inside
P-76	Owen H.	Identification of Novel and Cell Type enriched cofactors of the transcription activation domain of RelA (p65 NF-kB)
P-77	Lampert F.	Effect of doxorubicin on protein expression in human atrial trabeculae.
P-78	Hernandez P.	Peptide identification and characterization using tandem mass spectrometry data: an open-modification search approach with Popitam
P-79	Fogli A.	A preliminary peptidomic/proteomic study of lymphoblast cell lines from CACH/VWM patients reveals no obvious specific pattern
P-80	Menin L.	Mass spectrometry strategies for venom mapping and peptide sequencing from crude venoms: case applications with single arthropod specimen
P-81	Stenz l.	Differentially secreted proteins of Staphylococcus aureus in biofilm context
P-82	Rossier J. S.	Microfluidic-Based Immunoassay: Rapid Detection of Proteins and Affinity Screening
P-83	Wassermann K.	Bridging “The last Mile” in bioinformatics using an integrated, multidisciplinary approach for machine based reasoning in bio-medical research and diagnosis.
P-84	Klem J.	Reduction and alkylation of proteins for two dimensional gel electrophoresis
P-85	Bienvenut W.	Identification by tandem mass spectrometry of N-terminal acetylated proteins in eukaryotic samples for NetAcet1 prediction tool validation.
P-86	Snijders A. P. L.	Sequencing of 15N and 13C labeled peptides
P-87	Michel P. E.	Proteome analysis of human plasma and amniotic fluid by Off-GelTM isoelectric focusing followed by nano LC-MS/MS
P-88	Paton G.	Human Serum and Plasma Proteome Fractionation by IgY Antibodies to Abundant Proteins coupled with Multidimensional Chromatography
P-89	Sostaric E.	Identification and Characterization of the Oviductal Epithelial Cell Surface Proteome
P-90	Schiess R.	Exploring cell surface proteomes – Specific identification of Drosophila plasma membrane glycoproteins via mass spectrometry
P-91	Rinner O.	Topology and dynamics of a protein interaction network for the control of cell growth
P-92	Lambert J.	A Novel Approach to Automated High-Throughput Protein Enrichment and Characterization
P-93	Winoto A.	An Automated and Integrated Alternative to SDS-PAGE for Protein Analysis that Enables Efficient High Throughput Experimentation
P-94	Ferreira S.	Protein and mRNA quantification in Populus euphratica Oliv. submitted to heat stress
P-95	Mueller L. N.	MASTER LC/MS runs: A new concept in the comparativ
P-96	Hornshaw M. P.	A Linear Ion Trap for Quantitative Proteomics: Analysis of Synaptic Membranes of Different Strains of Mice