| 14:15 | Introduction by SystemsX.ch representative | |
| 14:30 | Plenary Lecture:
Fotis C. Kafatos (Imperial College, London UK) Omics for Understanding and Controlling Global Health Diseases (Auditorium maximum) |
|
| Auditorium
maximum (Systems Biology) Chair Ruedi Aebersold |
Semper
Auditorium (Biomedical
Applications) Chair Niels Lion |
|
| 15:30 | Picotti P. (Institute of Molecular Systems Biology, ETH Zurich)
Quantitative targeted proteomics for the analysis of cellular networks |
Rösli C. (Institute of Pharmaceutical Sciences, ETH Zurich) Identification of lymphoma-associated vascular accessible antigens using DeepQuanTR |
| Vujasinovic T. (helios biosciences, Créteil, France) Dynamic models of molecular interaction networks to select accurate therapeutic targets |
Thaminy S. (Institute of Molecular Systems Biology, ETH Zurich) Label-free proteomic approach to identify breast cancer biomarkers |
|
| 16:10 | Coffee Break | |
| 16:45 | Pertz O.C. (Institute for Biochemistry and Genetics, Biomedicine, Basel) A system biology view of spatio-temporal signaling during polarized cell migration |
Kolla V. (University Womens Hospital, Basel) Quantitative proteomics analysis of maternal plasma in preeclampsia pregnancies using isobaric tagging reagent (iTRAQ) |
| Bairoch A. (Swiss Institute of Bioinformastics, CALIPHO, Geneva) CALIPHO: we care about human proteins! |
Hüttenhain R. (Institute of Molecular Systems Biology, ETH Zurich) Protein signatures in plasma for stratification of ovarian cancer subtypes |
|
| 17:15 | Plenary Lecture:
Erez Dekel (Weizmann Institute of Science, Rehovot, Israel) Simplicity in protein dynamic response to drug combinations (Auditorium maximum) |
|
| 18:15 | Apéro and Vendors Event (Bio-Rad/ThermoFischer) | |
| 08:30 | Plenary Lecture:
Christian von Mering (University of
Zürich, Switzerland) Optimality and evolution of protein abundance levels in eukaryotes |
|
| Auditorium
maximum (Bioinformatics) Chair Patricia Palagi |
Semper
Auditorium (Technology) Chair Gérard Hopfgartner |
|
| 09:20 | Ahrens C.H. (Center for Model Organism Proteomes, Institute of Molecular Biology, Zurich) Bioinformatics for systems biology: Directed shotgun proteomics & deterministic protein inference |
Tran B.Q. (University of Lausanne, Protein Analysis Facility - Center for Integrative Genomics, Lausanne) Mapping the trypsin-resistant proteome by targeted multi-enzyme digestion of large tryptic peptides |
| Nasso S. (University of Padova, Information Engineering, Padova, Italy) 3DSpectra: A Matlab software for easy handling and 3D quantification of LC-MS labeled profile data |
Scherl A. (Centre Médical Universitaire, Dept. Struct. Biol. and Bioinformatics, Genève) Combining low- and high-energy tandem mass spectra for optimized peptide quantification |
|
| 09:50 | Coffee Break + Poster Session I | |
| 11:15 | Ferro M. (CEA/Grenoble, Laboratoire EDyP, Grenoble, France) IRMa and hEIDI : a software duo for the management and the exploration of MS/MS data |
Alenas K. (Denator AB, Gothenburg, Sweden) Heat stabilization of the tissue proteome for improved proteomics |
| Claassen M. (Institute of Molecular Systems Biology, ETH Zurich) Proteome coverage prediction for integrated proteomics datasets |
McDowall M.A. (Waters Corporation, MS Technology Centre, Manchester, United Kingdom) Extending the dynamic range of protein quantification and identification with a novel two-dimensional LC/MS approach |
|
| 11:45 | General Assembly SPS | |
| 12:45 | Lunch | |
| 13:45 | Plenary Lecture:
Gérôme Garin (CEA Grenoble, France) Quantitative Proteomics Applied to Clinical Studies: is there a need to make compromises? |
|
| Auditorium
maximum (Biomedical
Applications) Chair Hans Voshol |
Semper
Auditorium (Bioinformatics) Chair Christine Hoogland |
|
| 14:30 | Wollscheid B. (Institute of Molecular Systems Biology, ETH Zurich) Phenotyping cells without antibodies - multiplexed analysis of the cell surface information gateway |
Grossmann (Functional Genomics Center Zurich, University of Zurich, Zurich) Evaluation of relative and absolute quantification in shotgun |
| Surinova S. (Institute of Molecular Systems Biology, ETH Zurich) Detection of potential colorectal cancer markers in patients’ plasma |
Ducret A. (Molecular Medicine Laboratories
F. Hoffmann-La Roche AG, Basel) A novel protein scoring algorithm for shotgun proteomics |
|
| 15:00 | Coffee Break + Poster Session II | |
| 16:15 | Farina A. (University Medical Center (CMU), Department of Structural Biology and Bioinformatics , Geneva) Biomarkers identification in malignant biliary stenosis using bile proteomic analysis |
|
| Schiess R. (Institute of Molecular Systems Biology, ETH Zurich) Prostate cancer biomarkers for diagnosis and therapy |
||
| 16:45-17:45 | Plenary Lecture:
Dario Neri (ETH Zürich, Switzerland) Vascular Tumor Targeting: from target discovery to clinical applications |
|
| 18:45 | Apéro | |
| 19:15 | Conference dinner (ETH Zentrum, Foyer) | |
| 08:30-9:20 | Plenary lecture:
Ron Heeren (AMOLF, Amsterdam, The Netherlands) Imaging mass spectrometry of biological surfaces: innovation in biomolecular imaging |
|
| Auditorium
maximum (Technology) Chair Michael Affolter |
Semper
Auditorium (Systems
Biology) Chair Amos Bairoch |
|
| 09:30 | Schmidt A. (Institute of Molecular Systems Biology, ETH Zurich) Proteome-wide high-throughput screening using directed mass spectrometry: Application to the human pathogen L. interrogans |
Trinh H.V. (Institute of Molecular Biology, University of Zurich, Zurich) Functional genomics approaches to study molecular system dynamics of human adenovirus infection |
| Altelaar M. (Utrecht University, Biomolecular Mass Spectrometry and Proteomics Group, Utrecht, The Netherlands) Database independent proteomics; de novo sequence analysis by a combination of LysN protein digestion and electron transfer dissociation |
Rutishauser D. (Functional Genomics Center Zurich, University and ETH, Zurich) Quantitative analysis of adipose and liver tissue of obese mice using LTQ Orbitrap XL |
|
| Scheffler K. (Thermo Fisher Scientific, Dreieich, Germany) Maximizing protein ID by minimizing cycle time |
Schauer M.A. (Institute of Plant Biology, Zurich/CH) Protein dynamics during arabidopsis male gametophyte development |
|
| Matondo M. (Institute of Molecular Systems Biology, ETH Zurich) Qualitative screening of urinary biomarkers by selected reaction monitoring |
Weisser H. (Institute of Molecular Systems Biology, ETH Zurich) A hybrid strategy for LC-MS-based quantitative proteomics |
|
| 10:30 |
Coffee Break |
|
| 11:15 | Plenary lecture:
Gérard Hopfgartner (University of Geneva, Switzerland) Strategies to improve MRM selectivity and alternative approaches for proteins and peptides quantitation |
|
| 12:00 | Plenary lecture:
Pierre Thibault(University of Montreal, Canada) Evolution of phagocytosis functions revealed through the proteomics lens |
|
| 12:50 | Closing remarks | |
Venue
Programme
