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SPS' Digest

Issue 03, 30-Jan-2004

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In this issue, 86 articles have been selected from:
Disclaimer: The selection and categorisation reflect the views and understandings of contributors (i.e. SPS members).

Quick jumps to articles in: Bioinformatics (11) / Biological applications (16) / Biomedical applications (12) / Clinical applications (7) / Prokaryotes (2) / Pharmacology and Toxicology (1) / Protein Array (1) / Protein Characterization (8) / Protein-protein interaction (3) / PTMs (3) / Quantitation (5) / Review (7) / Methodology (16) / Meeting (3) / Other (6) /

Bioinformatics

GIS: a biomedical text-mining system for gene information discovery
Jung-Hsien Chiang, Hsu-Chun Yu, and Huai-Jen Hsu
Bioinformatics (2004) 20(1): 120-121

HOMGL--comparing genelists across species and with different accession numbers
Nils Bluthgen, Szymon M. Kielbasa, Branka Cajavec, and Hanspeter Herzel
Bioinformatics (2004) 20(1): 125-126

WILMA--automated annotation of protein sequences
Andreas Prlic, Francisco S. Domingues, Peter Lackner, and Manfred J. Sippl
Bioinformatics (2004) 20(1): 127-128

PARIS: a proteomic analysis and resources indexation system
Juhui Wang, Christophe Caron, Michel-Yves Mistou, Christophe Gitton, and Alain Trubuil
Bioinformatics (2004) 20(1): 133-135

TM or not TM: transmembrane protein prediction with low false positive rate using DAS-TMfilter
Miklos Cserzo, Frank Eisenhaber, Birgit Eisenhaber, and Istvan Simon
Bioinformatics (2004) 20(1): 136-137

Prediction of protein subcellular locations using fuzzy k-NN method
Ying Huang and Yanda Li
Bioinformatics (2004) 20(1): 21-28

Unraveling protein interaction networks with near-optimal efficiency.
Lappe M, Holm L.
Nature Biotechnology (2004) 22(1): 98-103.

Protein {beta}-turn prediction using nearest-neighbor method
Saejoon Kim
Bioinformatics (2004) 20(1): 40-44

High-resolution computer simulation of the dynamics of isoelectric focusing of proteins
Wolfgang Thormann, Tiemin Huang, Janusz Pawliszyn, Richard A. Mosher
ELECTROPHORESIS (2004) 25(2): 324-337

ClusPro: an automated docking and discrimination method for the prediction of protein complexes
Stephen R. Comeau, David W. Gatchell, Sandor Vajda, and Carlos J. Camacho
Bioinformatics (2004) 20(1): 45-50

MedBlast: searching articles related to a biological sequence
Qiang Tu, Haixu Tang, and Dafu Ding
Bioinformatics (2004) 20(1): 75-77

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Biological applications

Integration of chemical-genetic and genetic interaction data links bioactive compounds to cellular target pathways
Parsons AB, Brost RL, Ding H, Li Z, Zhang C, Sheikh B, Brown GW, Kane PM, Hughes TR, Boone C.
Nature Biotechnology (2004) 22(1): 62-9.

Principles of transcriptional control in the metabolic network of Saccharomyces cerevisiae.
Ihmels J, Levy R, Barkai N.
Nature Biotechnology (2004) 22(1): 86-92.

Profiling and comprehensive expression analysis of ABC transporter solute-binding proteins of Bacillus subtilis membrane based on a proteomic approach
Keigo Bunai, Masanori Ariga, Taro Inoue, Manabu Nozaki, Shinya Ogane, Hiroshi Kakeshita, Tadashi Nemoto, Hiroshi Nakanishi, Kunio Yamane
ELECTROPHORESIS (2004) 25(1): 141-155

Proteome characterization of human T helper 1 and 2 cells
Kirsi Rautajoki, Tuula A. Nyman, Riitta Lahesmaa
PROTEOMICS (2004) 4(1): 84-92

Use of two-dimensional gel electrophoresis proteome reference maps of dinoflagellates for species recognition of causative agents of harmful algal blooms
Leo Lai Chan, Ivor John Hodgkiss, Songhui Lu, Samuel Chun-Lap Lo
PROTEOMICS (2004) 4(1): 180-192

Proteomics as a tool to improve investigation of substantial equivalence in genetically modified organisms: The case of a virus-resistant tomato
Davide Corpillo, Giulia Gardini, Anna Maria Vaira, Manuela Basso, Silvio Aime, Gian Paolo Accotto, Mauro Fasano
PROTEOMICS (2004) 4(1): 193-200

Grape berry biochemistry revisited upon proteomic analysis of the mesocarp
Jean-Emmanuel Sarry, Nicolas Sommerer, François-Xavier Sauvage, Alexis Bergoin, Michel Rossignol, Guy Albagnac, Charles Romieu
PROTEOMICS (2004) 4(1): 201-215

Proteome analysis of cultivar-specific deregulations of Oryza sativa indica and O. sativa japonica cellular suspensions undergoing Rice yellow mottle virus infection
Marjolaine Ventelon-Debout, François Delalande, Jean-Paul Brizard, Hélène Diemer, Alain Van Dorsselaer, Christophe Brugidou
PROTEOMICS (2004) 4(1): 216-225

In vivo uniform 15N-isotope labelling of plants: Using the greenhouse for structural proteomics
Johannes H. Ippel, Laurice Pouvreau, Toos Kroef, Harry Gruppen, Geurt Versteeg, Peter van den Putten, Paul C. Struik, Carlo P. M. van Mierlo
PROTEOMICS (2004) 4(1): 226-234

Proteome comparative analysis of gynogenetic haploid and diploid embryos of goldfish (Carassius auratus)
Lingyun Huang, Bingxia Li, Chen Luo, Jinyun Xie, Ping Chen, Songping Liang
PROTEOMICS (2004) 4(1): 235-243

Comparative proteomics of human endothelial cell caveolae and rafts using two-dimensional gel electrophoresis and mass spectrometry
Richard R. Sprenger, Dave Speijer, Jaap Willem Back, Chris G. de Koster, Hans Pannekoek, Anton J. G. Horrevoets
ELECTROPHORESIS (2004) 25(1): 156-172

Study of the development of thermoresistance in human pancreatic carcinoma cell lines using proteome analysis
Julia Poland, Andrea Urbani, Hermann Lage, Martina Schnölzer, Pranav Sinha
ELECTROPHORESIS (2004) 25(1): 173-183

Quantitation of human glutathione S-transferases in complex matrices by liquid chromatography/tandem mass spectrometry with signature peptides
Fagen Zhang, Michael J. Bartels, William T. Stott
Rapid Communications in Mass Spectrometry (2004) 18(4): 491-498

Urine protein profiling with surface-enhanced laser-desorption/ionization time-of-flight mass spectrometry.
Schaub S, Wilkins J, Weiler T, Sangster K, Rush D, Nickerson P.
Kidney International (2004) 65(1): 323-32.

The Nature of Phosphorylated Chrysin-Protein Interactions Involved in Noncovalent Complex Formation by Electrospray Ionization Mass Spectroscopy
Xiao-Lan Chen, Ling-Bo Qu, Ting Zhang, Hong-Xia Liu, Fei Yu, Youzhu Yu, Xincheng Liao, and Yu-Fen Zhao
ANALYTICAL CHEMISTRY (2004) 76(1): 211-217

A proteomic approach for the analysis of instantly released wound and immune proteins in Drosophila melanogaster hemolymph.
Vierstraete E, Verleyen P, Baggerman G, D'Hertog W, Van den Bergh G, Arckens L, De Loof A, Schoofs L.
Proc Natl Acad Sci U S A (2004) 101(2): 470-5.

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Biomedical applications

Comparative proteomics of human endothelial cell caveolae and rafts using two-dimensional gel electrophoresis and mass spectrometry
Richard R. Sprenger, Dave Speijer, Jaap Willem Back, Chris G. de Koster, Hans Pannekoek, Anton J. G. Horrevoets
ELECTROPHORESIS (2004) 25(1): 156-172

Study of the development of thermoresistance in human pancreatic carcinoma cell lines using proteome analysis
Julia Poland, Andrea Urbani, Hermann Lage, Martina Schnölzer, Pranav Sinha
ELECTROPHORESIS (2004) 25(1): 173-183

Comparison of Proteomic and Genomic Analyses of the Human Breast Cancer Cell Line T47D and the Antiestrogen-resistant Derivative T47D-r
Martina Huber, Inke Bahr, Jorn R. Kratzschmar, Andreas Becker, Eva-Christina Muller, Peter Donner, Hans-Dieter Pohlenz, Martin R. Schneider, and Anette Sommer
Mol Cell Proteomics (2004) 3(1): 43-55

Proteomic analysis of nuclear proteins from proliferative and differentiated human colonic intestinal epithelial cells
Natacha Turck, Sophie Richert, Patrick Gendry, Jeanne Stutzmann, Michèle Kedinger, Emmanuelle Leize, Patricia Simon-Assmann, Alain Van Dorsselaer, Jean-François Launay
PROTEOMICS (2004) 4(1): 93-105

Expression Profiling of Lymphocyte Plasma Membrane Proteins
Matthew J. Peirce, Robin Wait, Shajna Begum, Jeremy Saklatvala, and Andrew P. Cope
Mol Cell Proteomics (2004) 3(1): 56-65

Mining biomarkers in human sera using proteomic tools
Rulin Zhang, Lisa Barker, Deborah Pinchev, John Marshall, Michèle Rasamoelisolo, Chris Smith, Peter Kupchak, Inga Kireeva, Leslee Ingratta, George Jackowski
PROTEOMICS (2004) 4(1): 244-256

Fatty Acid Binding Protein as a Serum Marker for the Early Diagnosis of Stroke: A Pilot Study
Catherine G. Zimmermann-Ivol, Pierre R. Burkhard, Josette Le Floch-Rohr, Laure Allard, Denis F. Hochstrasser, and Jean-Charles Sanchez
Mol Cell Proteomics (2004) 3(1): 66-72

>From Proteomic Analysis to Clinical Significance: Overexpression of Cytokeratin 19 Correlates with Hepatocellular Carcinoma Metastasis
Shi-Jian Ding, Yan Li, Ye-Xiong Tan, Man-Rong Jiang, Bo Tian, Ying-KunLiu, Xiao-Xia Shao, Sheng-Long Ye, Jia-Rui Wu, Rong Zeng, Hong-Yang Wang, Zhao-You Tang, and Qi-Chang Xia
Mol Cell Proteomics (2004) 3(1): 73-81

Complementary Analysis of the Mycobacterium tuberculosis Proteome by Two-dimensional Electrophoresis and Isotope-coded Affinity Tag Technology
Frank Schmidt, Samuel Donahoe, Kristine Hagens, Jens Mattow, Ulrich E.Schaible, Stefan H. E. Kaufmann, Ruedi Aebersold, and Peter R. Jungblut
Mol Cell Proteomics (2004) 3(1): 24-42

Nonreducing two-dimensional gel electrophoresis for the detection of Bence Jones proteins in serum and urine
Ingrid Miller, Monika Teinfalt, Michael Leschnik, Robin Wait, Manfred Gemeiner
PROTEOMICS (2004) 4(1): 257-260

Comparison of gene expression between left atria and left ventricles from non-diseased humans
Masako Tsubakihara, Neal K. Williams, Anne Keogh, Cristobal G. dos Remedios
PROTEOMICS (2004) 4(1): 261-270

Identification of tumor-associated proteins in oral tongue squamous cell carcinoma by proteomics
Qing-Yu He, Jia Chen, Hsiang-Fu Kung, Anthony Po-Wing Yuen, Jen-Fu Chiu
PROTEOMICS (2004) 4(1): 271-278

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Clinical applications

Optimization of the first dimension for separation by two-dimensional gel electrophoresis of basic proteins from human brain tissue
Kyla Pennington, Emma McGregor, Clare L. Beasley, Ian Everall, David Cotter, Michael J. Dunn
PROTEOMICS (2004) 4(1): 27-30

Proteome characterization of human T helper 1 and 2 cells
Kirsi Rautajoki, Tuula A. Nyman, Riitta Lahesmaa
PROTEOMICS (2004) 4(1): 84-92

Mining biomarkers in human sera using proteomic tools
Rulin Zhang, Lisa Barker, Deborah Pinchev, John Marshall, Michèle Rasamoelisolo, Chris Smith, Peter Kupchak, Inga Kireeva, Leslee Ingratta, George Jackowski
PROTEOMICS (2004) 4(1): 244-256

Nonreducing two-dimensional gel electrophoresis for the detection of Bence Jones proteins in serum and urine
Ingrid Miller, Monika Teinfalt, Michael Leschnik, Robin Wait, Manfred Gemeiner
PROTEOMICS (2004) 4(1): 257-260

Comparison of gene expression between left atria and left ventricles from non-diseased humans
Masako Tsubakihara, Neal K. Williams, Anne Keogh, Cristobal G. dos Remedios
PROTEOMICS (2004) 4(1): 261-270

Identification of tumor-associated proteins in oral tongue squamous cell carcinoma by proteomics
Qing-Yu He, Jia Chen, Hsiang-Fu Kung, Anthony Po-Wing Yuen, Jen-Fu Chiu
PROTEOMICS (2004) 4(1): 271-278

Fatty Acid Binding Protein as a Serum Marker for the Early Diagnosis of Stroke: A Pilot Study
Catherine G. Zimmermann-Ivol, Pierre R. Burkhard, Josette Le Floch-Rohr, Laure Allard, Denis F. Hochstrasser, and Jean-Charles Sanchez
Mol Cell Proteomics (2004) 3(1): 66-72

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Prokaryotes

Global changes in gene expression observed at the transition from growth to stationary phase in Listeria monocytogenes ScottA batch culture
Mark E. Weeks, David C. James, Gary K. Robinson, C. Mark Smales
PROTEOMICS (2004) 4(1): 123-135

An analysis of the proteomic profile for Thermoanaerobacter tengcongensis under optimal culture conditions
Jingqiang Wang, Yanfen Xue, Xiaoli Feng, Xiaolei Li, Hao Wang, Wei Li, Caifeng Zhao, Xiaojie Cheng, Yanhe Ma, Peijin Zhou, Jianning Yin, Aruni Bhatnagar, Rong Wang, Siqi Liu
PROTEOMICS (2004) 4(1): 136-150

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Pharmacology and Toxicology

Proteomics-based target identification: bengamides as a new class of methionine aminopeptidase inhibitors.
Towbin H, Bair KW, DeCaprio JA, Eck MJ, Kim S, Kinder FR, Morollo A, Mueller DR, Schindler P, Song HK, van Oostrum J, Versace RW, Voshol H, Wood J, Zabludoff S, Phillips PE.
Journal of Biological Chemistry (2003) 278(52): 52964-71

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Protein Array

Immunostaining with dissociable antibody microarrays
Yingjian Wang
PROTEOMICS (2004) 4(1): 20-26

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Protein Characterization

De novo sequencing of tryptic peptides sulfonated by 4-sulfophenyl isothiocyanate for unambiguous protein identification using post-source decay matrix-assisted laser desorption/ionization mass spectrometry
Ping Chen, Song Nie, Wei Mi, Xian-Chun Wang, Song-Ping Liang
Rapid Communications in Mass Spectrometry (2004) 18(2): 191-198

Mass Spectrometric Approaches Using Electrospray Ionization Charge States and Hydrogen-Deuterium Exchange for Determining Protein Structures and Their Conformational Changes
Xuguang Yan, Jeffrey Watson, P. Shing Ho, and Max L. Deinzer
Mol Cell Proteomics (2004) 3(1): 10-23

C-Terminal sequencing method for peptides and proteins by the reaction with a vapor of perfluoric acid in acetic anhydride
Kenji Miyazaki, Akira Tsugita
PROTEOMICS (2004) 4(1): 11-19

Process for the integrated extraction, identification and quantification of metabolites, proteins and RNA to reveal their co-regulation in biochemical networks
Wolfram Weckwerth, Kathrin Wenzel, Oliver Fiehn
PROTEOMICS (2004) 4(1): 78-83

Determination of cationic mobilities and pKa values of 22 amino acids by capillary zone electrophoresis
Kate?ina V?eláková, Iva Zusková, Ernst Kenndler, Bohuslav Ga?
ELECTROPHORESIS (2004) 25(2): 309-317

Chemical cross-linking and mass spectrometry for mapping three-dimensional structures of proteins and protein complexes
Andrea Sinz
Journal of Mass Spectrometry (2003) 38(12): 1225-1237

An Alternative to Tandem Mass Spectrometry: Isoelectric Point and Accurate Mass for the Identification of Peptides
Benjamin J. Cargile and James L. Stephenson, Jr.
ANALYTICAL CHEMISTRY (2004) 76(2): 267-275

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Protein-protein interaction

Gaining confidence in high-throughput protein interaction networks.
Bader JS, Chaudhuri A, Rothberg JM, Chant J.
Nature Biotechnology (2004) 22(1): 78-85.

Identification of the Substrates and Interaction Proteins of Aurora Kinases from a Protein-Protein Interaction Model
An-Chi Tien, Ming-Hong Lin, Li-Jen Su, Yi-Ren Hong, Tai-Shan Cheng, Yuan-Chii G. Lee, Wey-Jinq Lin, Ivan H. Still, and Chi-Ying F. Huang
Mol Cell Proteomics (2004) 3(1): 93-104

A Map of the Interactome Network of the Metazoan C. elegans.
Li S, Armstrong CM, Bertin N, Ge H, Milstein S, Boxem M, Vidalain PO, Han JD, Chesneau A, Hao T, Goldberg DS, Li N, Martinez M, Rual JF, Lamesch P, Xu L, Tewari M, Wong SL, Zhang LV, Berriz GF, Jacotot L, Vaglio P, Reboul J, Hirozane-Kishikawa T, Li Q, Gabel HW, Elewa A, Baumgartner B, Rose DJ, Yu H, Bosak S, Sequerra R, Fraser A, Mango SE, Saxton WM, Strome S, Van Den Heuvel S, Piano F, Vandenhaute J, Sardet C, Gerstein M, Doucette-Stamm L, Gunsalus KC, Harper JW, Cusick ME, Roth FP, Hill DE, Vidal M.
Science (2004) 303(5657): 540-3.

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PTMs

Prediction of Posttranslational Modifications Using Intact-Protein Mass Spectrometric Data
Mark R. Holmes and Michael C. Giddings
ANALYTICAL CHEMISTRY (2004) 76(2): 276-282

Differentiation between peptides containing acetylated or tri-methylated lysines by mass spectrometry: An application for determining lysine 9 acetylation and methylation of histone H3
Kangling Zhang, Peter M. Yau, Bhaskar Chandrasekhar, Ron New, Richard Kondrat, Brian S. Imai, Morton E. Bradbury
PROTEOMICS (2004) 4(1): 1-10

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Quantitation

Complementary Analysis of the Mycobacterium tuberculosis Proteome by Two-dimensional Electrophoresis and Isotope-coded Affinity Tag Technology
Frank Schmidt, Samuel Donahoe, Kristine Hagens, Jens Mattow, Ulrich E.Schaible, Stefan H. E. Kaufmann, Ruedi Aebersold, and Peter R. Jungblut
Mol Cell Proteomics (2004) 3(1): 24-42

HysTag--A Novel Proteomic Quantification Tool Applied to Differential Display Analysis of Membrane Proteins From Distinct Areas of Mouse Brain
Jesper V. Olsen, Jens R. Andersen, Peter Aa. Nielsen, Michael L. Nielsen, Daniel Figeys, Matthias Mann, and Jacek R. Wisniewski
Mol Cell Proteomics (2004) 3(1): 82-92

Mass spectrometry for the detection of differentially expressed proteins: a comparison of surface-enhanced laser desorption/ionization and capillary electrophoresis/mass spectrometry
Nils v. Neuhoff, Thorsten Kaiser, Stefan Wittke, Ronald Krebs, Andrew Pitt, Aurea Burchard, Astrid Sundmacher, Brigitte Schlegelberger, Walter Kolch, Harald Mischak
Rapid Communications in Mass Spectrometry (2004) 18(2): 149-156

Insights into the relation between mRNA and protein expression patterns: I. Theoretical considerations.
Mehra A, Lee KH, Hatzimanikatis V.
Biotechnology & Bioengineering (2003) 84(7): 822-33.

Insights into the relation between mrna and protein expression patterns: II. Experimental observations in Escherichia coli.
Lee PS, Shaw LB, Choe LH, Mehra A, Hatzimanikatis V, Lee KH.
Biotechnology & Bioengineering (2003) 84(7): 834-41.

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Review

How much of the proteome do we see with discovery-based proteomics methods and how much do we need to see?
Scott D. Patterson
Current Proteomics (2004) 1(1): 3-12.

New paradigms in cellular function and the need for top-down proteomics analysis.
Corinne Stannard, Larry R. Brown, Jasminka Godovac-Zimmermann
Current Proteomics (2004) 1(1): 13-25.

Structural proteomics: inferring function from protein structure.
David L. Wild, Mansoor A.S. Saqi
Current Proteomics (2004) 1(1): 59-65.

Protein Identification by Mass Spectrometry: Issues to be Considered
Michael A. Baldwin
Mol Cell Proteomics (2004) 3(1): 1-9

Mass Spectrometric Approaches Using Electrospray Ionization Charge States and Hydrogen-Deuterium Exchange for Determining Protein Structures and Their Conformational Changes
Xuguang Yan, Jeffrey Watson, P. Shing Ho, and Max L. Deinzer
Mol Cell Proteomics (2004) 3(1): 10-23

Chemical cross-linking and mass spectrometry for mapping three-dimensional structures of proteins and protein complexes
Andrea Sinz
Journal of Mass Spectrometry (2003) 38(12): 1225-1237

Environmental stress responses in Lactobacillus: A review
Maria De Angelis, Marco Gobbetti
PROTEOMICS (2004) 4(1): 106-122

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Methodology

A systematic investigation into the recovery of radioactively labeled proteins from sodium dodecyl sulfate-polyacrylamide gels
Shaobo Zhou, Matthew J. Bailey, Michael J. Dunn, Victor R. Preedy, Peter W. Emery
ELECTROPHORESIS (2004) 25(1): 1-7

Feasibility of nonvolatile buffers in capillary electrophoresis-electrospray ionization-mass spectrometry of proteins
Jonas H. C. Eriksson, Roelof Mol, Govert W. Somsen, Wouter L. J. Hinrichs, Henderik W. Frijlink, Gerhardus J. de Jong
ELECTROPHORESIS (2004) 25(1): 43-49

Solid-phase microextraction combined with surface-enhanced laser desorption/ionization introduction for ion mobility spectrometry and mass spectrometry using polypyrrole coatings
Yan Wang, Markus Walles, Bruce Thomson, Sabatino Nacson, Janusz Pawliszyn
Rapid Communications in Mass Spectrometry (2004) 18(2): 157-162

Direct ampholyte-free liquid-phase isoelectric peptide focusing: Application to the human serum proteome
Zhen Xiao, Thomas P. Conrads, David A. Lucas, George M. Janini, Carl F. Schaefer, Kenneth H. Buetow, Haleem J. Issaq, Timothy D. Veenstra
ELECTROPHORESIS (2004) 25(1): 128-133

Optimization of the first dimension for separation by two-dimensional gel electrophoresis of basic proteins from human brain tissue
Kyla Pennington, Emma McGregor, Clare L. Beasley, Ian Everall, David Cotter, Michael J. Dunn
PROTEOMICS (2004) 4(1): 27-30

A detergent- and cyanogen bromide-free method for integral membrane proteomics: Application to Halobacterium purple membranes and the human epidermal membrane proteome
Josip Blonder, Thomas P. Conrads, Li-Rong Yu, Atsushi Terunuma, George M. Janini, Haleem J. Issaq, Jonathan C. Vogel, Timothy D. Veenstra
PROTEOMICS (2004) 4(1): 31-45

Comparing expression level-dependent features in codon usage with protein abundance: An analysis of ?predictive proteomics?
Alice C. McHardy, Alfred Pühler, Jörn Kalinowski, Folker Meyer
PROTEOMICS (2004) 4(1): 46-58

Orthogonal time-of-flight secondary ion mass spectrometric analysis of peptides using large gold clusters as primary ions
Agnès Tempez, J. A. Schultz, S. Della-Negra, J. Depauw, D. Jacquet, A. Novikov, Y. Lebeyec, M. Pautrat, M. Caroff, M. Ugarov, H. Bensaoula, M. Gonin, K. Fuhrer, Amina Woods
Rapid Communications in Mass Spectrometry (2004) 18(4): 371-376

An Alternative to Tandem Mass Spectrometry: Isoelectric Point and Accurate Mass for the Identification of Peptides
Benjamin J. Cargile and James L. Stephenson, Jr.
ANALYTICAL CHEMISTRY (2004) 76(2): 267-275

Integrated Sample Preparation and MALDI Mass Spectrometry on a Microfluidic Compact Disk
Magnus Gustafsson, Daniel Hirschberg, Carina Palmberg, Hans Jörnvall, and Tomas Bergman
ANALYTICAL CHEMISTRY (2004) 76(2): 345-350

Protein identification by peptide mass fingerprinting and peptide sequence tagging with alternating scans of nano-liquid chromatography/infrared multiphoton dissociation Fourier transform ion cyclotron resonance mass spectrometry
Toshiyuki Kosaka, Tomoko Yoneyama-Takazawa, Kazuishi Kubota, Tatsuji Matsuoka, Ikuya Sato, Takamitsu Sasaki, Yorihisa Tanaka
Journal of Mass Spectrometry (2003) 38(12): 1281-1287

Synthesis/Degradation Ratio Mass Spectrometry for Measuring Relative Dynamic Protein Turnover
Benjamin J. Cargile, Jonathan L. Bundy, Amy M. Grunden, and James L. Stephenson, Jr.
ANALYTICAL CHEMISTRY (2004) 76(1): 86-97

Ultrasensitive Proteomics Using High-Efficiency On-Line Micro-SPE-NanoLC-NanoESI MS and MS/MS
Yufeng Shen, Nikola Toli , Christophe Masselon, Ljiljana Pa a-Toli , David G. Camp, II, Kim K. Hixson, Rui Zhao, Gordon A. Anderson, and Richard D. Smith
ANALYTICAL CHEMISTRY (2004) 76(1): 144-154

Improvement of quality of peptide mass spectra in matrix-assisted laser desorption/ionization time-of-flight mass spectrometry and post-source decay analysis of salty protein digests by using on-target washing
Pavel ?ehulka, Ji?í ?alplachta, Josef Chmelík
Journal of Mass Spectrometry (2003) 38(12): 1267-1269

Chemical Strategies for Activity-Based Proteomics
Anna E. Speers, Benjamin F. Cravatt
ChemBioChem (2004) 5(1): 41-47

Open Tubular Capillary Electrochromatography of Synthetic Peptides on Etched Chemically Modified Columns
Joseph J. Pesek, Maria T. Matyska, and G. Brent Dawson Jenny I-Chen Chen, Reinhard I. Boysen, and Milton T. W. Hearn
ANALYTICAL CHEMISTRY (2004) 76(1): 23-30

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Meeting

Meetings: Electrophoresis 1/2004
ELECTROPHORESIS (2004) 25(1): 184

Meetings: Proteomics 1/2004
PROTEOMICS (2004) 4(1): 279

Meetings: Electrophoresis 2/2004
ELECTROPHORESIS (2004) 25(2): 388

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Other

Editorial: Proteomics 1/2004
Michael J. Dunn
PROTEOMICS (2004) 4(1): NA

Erratum: Proteomics 1/2004
PROTEOMICS (2004) 4(1): 279

New on the Market: Proteomics 1/2004
PROTEOMICS (2004) 4(1): 280-282

The quest for the mechanisms of life.
Klapa MI, Quackenbush J.
Biotechnology & Bioengineering (2003) 84(7): 739-42.

A new strategy for the synthesis of glycoproteins.
Zhang Z, Gildersleeve J, Yang YY, Xu R, Loo JA, Uryu S, Wong CH, Schultz PG.
Science (2004) 303(5656): 371-3.

The impact of new technologies on human population studies.
Waters MD, Selkirk JK, Olden K.
Mutation Research (2003) 544(2-3): 349-60.

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