SPS logo    

SPS' Digest

Issue 14, 23-Dec-2004

[Current issue] [Archives] [Search] [Email alert] [Submit article]

Quick jumps to articles in: Bioinformatics (18) / Biological applications (16) / Biomedical and clinical applications (30) / Eukaryotic Cells And Tissues (3) / Prokaryotes (2) / Protein Array (2) / Protein Characterization - PTMs (6) / Protein-protein interaction (1) / Quantitation (1) / Review (17) / Methodology (11) / Meeting (4) / Other (2) /

In this issue, 106 articles have been selected from:
Disclaimer: The selection and categorisation reflect the views and understandings of contributors (i.e. SPS members).

Quick jumps to articles in: Bioinformatics (18) / Biological applications (16) / Biomedical and clinical applications (30) / Eukaryotic Cells And Tissues (3) / Prokaryotes (2) / Protein Array (2) / Protein Characterization - PTMs (6) / Protein-protein interaction (1) / Quantitation (1) / Review (17) / Methodology (11) / Meeting (4) / Other (2) /

Bioinformatics

Statistical Model for Large-Scale Peptide Identification in Databases from Tandem Mass Spectra Using SEQUEST.
Lopez-Ferrer D, Martinez-Bartolome S, Villar M, Campillos M, Martin-Maroto F, Vazquez J.
Anal Chem (2004) 76(23): 6853-60

AMASS: Software for Automatically Validating the Quality of MS/MS Spectrum from SEQUEST Results
Wei Sun, Fuxin Li, Jue Wang, Dexian Zheng, and Youhe Gao
Mol Cell Proteomics (2004) 3(12): 1194-1199

DynaProt 2D: an advanced proteomic database for dynamic online access to proteomes and two-dimensional electrophoresis gels
Oliver Drews and Angelika Gorg
Nucl Acids Res (2005) 33(1): D583-D587

Arabidopsis nucleolar protein database (AtNoPDB)
John W. S. Brown, Peter J. Shaw, Paul Shaw, and David F. Marshall
Nucl Acids Res (2005) 33(1): D633-D636

The Universal Protein Resource (UniProt)
Amos Bairoch, Rolf Apweiler, Cathy H. Wu, Winona C. Barker, Brigitte Boeckmann, Serenella Ferro, Elisabeth Gasteiger, Hongzhan Huang, Rodrigo Lopez, Michele Magrane, Maria J. Martin, Darren A. Natale, Claire O'Donovan, Nicole Redaschi, and Lai-Su L. Yeh
Nucl Acids Res (2005) 33(1): D154-D159

EchoBASE: an integrated post-genomic database for Escherichia coli
Raju V. Misra, Richard S. P. Horler, Wolfgang Reindl, Igor I. Goryanin, and Gavin H. Thomas
Nucl Acids Res (2005) 33(1): D329-D333

Integration with the human genome of peptide sequences obtained by high-throughput mass spectrometry
Frank Desiere, Eric W Deutsch, Alexey I Nesvizhskii, Parag Mallick, Nichole L King, Jimmy K Eng, Alan Aderem, Rose Boyle, Erich Brunner, Samuel Donohoe, Nelson Fausto, Ernst Hafen, Lee Hood, Michael G Katze, Kathleen A Kennedy, Floyd Kregenow, Hookeun Lee, Biaoyang Lin, Dan Martin, Jeffrey A Ranish, David J Rawlings, Lawrence E Samelson, Yuzuru Shiio, Julian D Watts, Bernd Wollscheid, Michael E Wright, Wei Yan, Lihong Yang, Eugene C Yi, Hui Zhang, Ruedi Aebersold
Genome Biology (2004) 6(1): R9

2005 Database issue
Nucl Acids Res (2005) 33(1): D1-D480

Processing of Data Generated by 2-Dimensional Gel Electrophoresis for Statistical Analysis: Missing Data, Normalization, and Statistics
Jinsook Chang, Holly Van Remmen, # Walter F. Ward, Fred E. Regnier, Arlan Richardson, # and John Cornell #
JOURNAL OF PROTEOME RESEARCH (2004) 3(6): 1210-1218

Open Source System for Analyzing, Validating, and Storing Protein Identification Data
Robertson Craig, John P. Cortens, and Ronald C. Beavis
JOURNAL OF PROTEOME RESEARCH (2004) 3(6): 1234-1242

GFSWeb: A Web Tool for Genome-Based Identification of Proteins from Mass Spectrometric Samples
Michael S. Wisz, Melissa Kimball Suarez, Mark R. Holmes, and Morgan C. Giddings
JOURNAL OF PROTEOME RESEARCH (2004) 3(6): 1292-1295

Quantifying reproducibility for differential proteomics: noise analysis for protein liquid chromatography-mass spectrometry of human serum
Markus Anderle, Sushmita Roy, Hua Lin, Christopher Becker, and Keith Joho
Bioinformatics (2004) 20(18): 3575-3582

Highly specific prediction of phosphorylation sites in proteins
Matthias Koenig and Niels Grabe
Bioinformatics (2004) 20(18): 3620-3627

Modular, scriptable and automated analysis tools for high-throughput peptide mass fingerprinting
Jim Samuelsson, Daniel Dalevi, Fredrik Levander, and Thorsteinn Rognvaldsson
Bioinformatics (2004) 20(18): 3628-3635

Shotgun Protein Sequencing by Tandem Mass Spectra Assembly
Nuno Bandeira, Haixu Tang, Vineet Bafna, and Pavel Pevzner
ANALYTICAL CHEMISTRY (2004) 76(24): 7221-7233

Average peptide score: a useful parameter for identification of proteins derived from database searches of liquid chromatography/tandem mass spectrometry data.
Chepanoske CL, Richardson BE, von Rechenberg M, Peltier JM.
Rapid Commun Mass Spectrom (2004) 19(1): 9-14

Probability-Based Evaluation of Peptide and Protein Identifications from Tandem Mass Spectrometry and SEQUEST Analysis: The Human Proteome
Wei-Jun Qian, Tao Liu, Matthew E. Monroe, Eric F. Strittmatter, Jon M. Jacobs, Konstantinos Petritis, David G. Camp II, and Richard D. Smith
JOURNAL OF PROTEOME RESEARCH Early Edition: published 12/17/2004

ProteomeGRID: towards a high-throughput proteomics pipeline through opportunistic cluster image computing for two-dimensional gel electrophoresis
Andrew W. Dowsey, Michael J. Dunn, Guang-Zhong Yang
PROTEOMICS (2004) 4(12): 3800-3812

[Back to TOP]

Biological applications

Shaping the mitochondrial proteome.
Gabaldon T, Huynen MA.
Biochim Biophys Acta (2004) 1659(2-3): 212-20

Proteomic Analysis of Arginine Adducts on Glyoxal-modified Ribonuclease
William E. Cotham, Thomas O. Metz, P. Lee Ferguson, Jonathan W. C. Brock, Davinia J. S. Hinton, Suzanne R. Thorpe, John W. Baynes, and Jennifer M. Ames
Mol Cell Proteomics (2004) 3(12): 1145-1153

Chemical Proteomic Analysis Reveals Alternative Modes of Action for Pyrido[2,3-d]pyrimidine Kinase Inhibitors
Josef Wissing, Klaus Godl, Dirk Brehmer, Stephanie Blencke, Martina Weber, Peter Habenberger, Matthias Stein-Gerlach, Andrea Missio, Matt Cotten, Stefan Muller, and Henrik Daub
Mol Cell Proteomics (2004) 3(12): 1181-1193

Proteomic Analysis of Human Serum by Two-Dimensional Differential Gel Electrophoresis after Depletion of High-Abundant Proteins
Brett A. Chromy, Arlene D. Gonzales, Julie Perkins, Megan W. Choi, Michele H. Corzett, Brian C. Chang, Christopher H. Corzett, and Sandra L. McCutchen-Maloney
JOURNAL OF PROTEOME RESEARCH (2004) 3(6): 1120-1127

Biology of the Cold Adapted Archaeon, Methanococcoides burtonii Determined by Proteomics Using Liquid Chromatography-Tandem Mass Spectrometry
Amber Goodchild, Mark Raftery, Neil F. W. Saunders, Michael Guilhaus, and Ricardo Cavicchioli
JOURNAL OF PROTEOME RESEARCH (2004) 3(6): 1164-1176

Analysis of low-abundance, low-molecular-weight serum proteins using mass spectrometry.
Merrell K, Southwick K, Graves SW, Esplin MS, Lewis NE, Thulin CD.
J Biomol Tech (2004) 15(4): 238-48

Quantitative proteomic analysis of age-related changes in human cerebrospinal fluid.
Zhang J, Goodlett DR, Peskind ER, Quinn JF, Zhou Y, Wang Q, Pan C, Yi E, Eng J, Aebersold RH, Montine TJ.
Neurobiol Aging (2005) 26(2): 207-27

Proteomic analysis of nicotine-associated protein expression in the striatum of repeated nicotine-treated rats.
Yeom M, Shim I, Lee HJ, Hahm DH.
Biochem Biophys Res Commun (2005) 326(2): 321-8

Identification of Gastric Cancer Patients by Serum Protein Profiling
Matthias P. A. Ebert, Jörn Meuer, Jan C. Wiemer, Hans-Ulrich Schulz, Marc A. Reymond, Ulrich Traugott, Peter Malfertheiner, and Christoph Röcken
JOURNAL OF PROTEOME RESEARCH (2004) 3(6): 1261-1266

Mass spectrometric protein structure characterization reveals cause of migration differences of haptoglobin ? chains in two-dimensional gel electrophoresis
Stefan Mikkat, Cornelia Koy, Markus Ulbrich, Bruno Ringel, Michael O. Glocker
PROTEOMICS (2004) 4(12): 3921-3932

Proteome Analysis of NIH3T3 Cells Transformed by Activated G12: Regulation of Leukemia-Associated Protein SET
Rashmi N. Kumar, Rangasudhakar Radhakrishnan, Ji Hee Ha, and N. Dhanasekaran
JOURNAL OF PROTEOME RESEARCH (2004) 3(6): 1177-1183

Large-Scale Quantitative Proteomic Study of PUMA-Induced Apoptosis Using Two-Dimensional Liquid Chromatography-Mass Spectrometry Coupled with Amino Acid-Coded Mass Tagging
Sheng Gu, Yuchun Du, Jin Chen, Zhihe Liu, E. Morton Bradbury, Chien-An A. Hu, and Xian Chen
JOURNAL OF PROTEOME RESEARCH (2004) 3(6): 1191-1200

Two-dimensional gel electrophoresis database of murine R1 embryonic stem cells
Steven T. Elliott, David G. Crider, Christopher P. Garham, Kenneth R. Boheler, Jennifer E. Van Eyk
PROTEOMICS (2004) 4(12): 3813-3832

Acidic proteome of growing and resting Lactococcus lactis metabolizing maltose
Johan Palmfeldt, Fredrik Levander, Bärbel Hahn-Hägerdal, Peter James
PROTEOMICS (2004) 4(12): 3881-3898

Characterization of the in vivo forms of lacrimal-specific proline-rich proteins in human tear fluid
Kim Y. C. Fung, Carol Morris, Sonal Sathe, Robert Sack, Mark W. Duncan
PROTEOMICS (2004) 4(12): 3953-3959

[Back to TOP]

Biomedical and clinical applications

Proteome analysis of human substantia nigra in Parkinson's disease
Manuela Basso, Sabrina Giraudo, Davide Corpillo, Bruno Bergamasco, Leonardo Lopiano, Mauro Fasano
PROTEOMICS (2004) 4(12): 3943-3952

A proteomic analysis of thioacetamide-induced hepatotoxicity and cirrhosis in rat livers
Teck Yew Low, Chon Kar Leow, Manuel Salto-Tellez, Maxey C. M. Chung
PROTEOMICS (2004) 4(12): 3960-3974

Differential expression profiling of human pancreatic adenocarcinoma and healthy pancreatic tissue
ZhaoHui Lu, LiPing Hu, Stefan Evers, Jie Chen, Yan Shen
PROTEOMICS (2004) 4(12): 3975-3988

Plasma proteome of severe acute respiratory syndrome analyzed by two-dimensional gel electrophoresis and mass spectrometry.
Chen JH, Chang YW, Yao CW, Chiueh TS, Huang SC, Chien KY, Chen A, Chang FY, Wong CH, Chen YJ.
Proc Natl Acad Sci U S A Early Edition: published 30-Nov-2004

Proteomic analysis to identify breast cancer biomarkers in nipple aspirate fluid.
Alexander H, Stegner AL, Wagner-Mann C, Du Bois GC, Alexander S, Sauter ER.
Clin Cancer Res (2004) 10(22): 7500-10

Cerebrospinal fluid protein patterns in neurodegenerative disease revealed by liquid chromatography-Fourier transform ion cyclotron resonance mass spectrometry
Margareta Ramström, Igor Ivonin, Anders Johansson, Håkan Askmark, Karin E. Markides, Roman Zubarev, Per Håkansson, Sten-Magnus Aquilonius, Jonas Bergquist
PROTEOMICS (2004) 4(12): 4010-4018

Proteomic analysis of melanoma-derived exosomes by two-dimensional polyacrylamide gel electrophoresis and mass spectrometry
Rainy Mears, Rachel A. Craven, Sarah Hanrahan, Nick Totty, Carol Upton, Sarah L. Young, Poulam Patel, Peter J. Selby, Rosamonde E. Banks
PROTEOMICS (2004) 4(12): 4019-4031

In Vitro Biomarker Discovery for Atherosclerosis by Proteomics
Estelle M. Fach, Leah-Ann Garulacan, Ji Gao, Qing Xiao, Stephen M. Storm, Yves P. Dubaquie, Stanley A. Hefta, and Gregory J. Opiteck
Mol Cell Proteomics (2004) 3(12): 1200-1210

Proteomic approach to identify acute phase response-related proteins with low molecular weight in loach skin following injury
Xuanxian Peng, Yajun Wu, Jingan Chen, Sanying Wang
PROTEOMICS (2004) 4(12): 3989-3997

Identification of proteins regulated by interferon-? in resistant and sensitive malignant melanoma cell lines
Rachel A. Craven, Anthea J. Stanley, Sarah Hanrahan, Nick Totty, David P. Jackson, Razvan Popescu, Allen Taylor, Jürgen Frey, Peter J. Selby, Poulam M. Patel, Rosamonde E. Banks
PROTEOMICS (2004) 4(12): 3998-4009

Differential protein expression profile in gastrointestinal stromal tumors
B. Landuyt, H. Prenen, M. Debiec-Rychter, R. Sciot, E. A de Bruijn and A. T. van Oosterom
Amino Acids Early Edition: published 12-Nov-2004

Plasma proteome of severe acute respiratory syndrome analyzed by two-dimensional gel electrophoresis and mass spectrometry
Jenn-Han Chen, Yu-Wang Chang, Chen-Wen Yao, Tzong-Shi Chiueh, Su-Chin Huang, Ko-Yi Chien, An Chen, Feng-Yee Chang, Chi-Huey Wong, and Yu-Ju Chen
PNAS (2004) 101(49): 17039-17044

Early changes in protein expression detected by mass spectrometry predict tumor response to molecular therapeutics.
Reyzer ML, Caldwell RL, Dugger TC, Forbes JT, Ritter CA, Guix M, Arteaga CL, Caprioli RM.
Cancer Res (2004) 64(24): 9093-100

Protein expression profiles in pancreatic adenocarcinoma compared with normal pancreatic tissue and tissue affected by pancreatitis as detected by two-dimensional gel electrophoresis and mass spectrometry.
Shen J, Person MD, Zhu J, Abbruzzese JL, Li D.
Cancer Res (2004) 64(24): 9018-26

Proteomic analysis of voided urine after prostatic massage from patients with prostate cancer: A pilot study.
Rehman I, Azzouzi AR, Catto JW, Allen S, Cross SS, Feeley K, Meuth M, Hamdy FC.
Urology (2004) 64(6): 1238-43

Use of mass spectrometry to identify protein biomarkers of disease severity in the synovial fluid and serum of patients with rheumatoid arthritis.
Liao H, Wu J, Kuhn E, Chin W, Chang B, Jones MD, O'neil S, Clauser KR, Karl J, Hasler F, Roubenoff R, Zolg W, Guild BC.
Arthritis Rheum (2004) 50(12): 3792-803

Analysis of prostate cancer by proteomics using tissue specimens.
Liu AY, Zhang H, Sorensen CM, Diamond DL.
J Urol (2005) 173(1): 73-8

Application of proteomics and protein analysis for biomarker and target finding for immunotherapy.
Weingarten P, Lutter P, Wattenberg A, Blueggel M, Bailey S, Klose J, Meyer HE, Huels C.
Methods Mol Med (2005) 109: 155-74

A proteomics approach to the study of absorption, distribution, metabolism, excretion, and toxicity.
Nordvarg H, Flensburg J, Ronn O, Ohman J, Marouga R, Lundgren B, Haid D, Malmport E, Goscinski J, Hornsten L, Scigelova M, Bourin S, Garberg P, Woffendin G, Fenyo D, Bergling H, Forsberg E.
J Biomol Tech (2004) 15(4): 265-75

Proteomic analysis of human breast cancer tissue with laser-capture microdissection and reverse-phase protein microarrays.
Cowherd SM, Espina VA, Petricoin EF 3rd, Liotta LA.
Clin Breast Cancer (2004) 5(5): 385-92

Application of proteomic technologies to tumor analysis.
Misek DE, Imafuku Y, Hanash SM.
Pharmacogenomics (2004) 5(8): 1129-37

Search of plasma markers for colorectal cancer by matrix-assisted laser desorption/ionization mass spectrometry.
Seraglia R, Ragazzi E, Vogliardi S, Allegri G, Pucciarelli S, Agostini M, Lise M, Nitti D, Urso ED, Traldi P
J Mass Spectrom Early Edition: published 2004 Dec 7

Identification of Gastric Cancer Patients by Serum Protein Profiling
Matthias P. A. Ebert, Jörn Meuer, Jan C. Wiemer, Hans-Ulrich Schulz, Marc A. Reymond, Ulrich Traugott, Peter Malfertheiner, and Christoph Röcken
JOURNAL OF PROTEOME RESEARCH (2004) 3(6): 1261-1266

2D LC/MS Analysis of Membrane Proteins from Breast Cancer Cell Lines MCF7 and BT474
Rong Xiang, Yang Shi, Deborah A. Dillon, Brina Negin, Csaba Horváth, and James A. Wilkins,
JOURNAL OF PROTEOME RESEARCH (2004) 3(6): 1278-1283

Molecular Therapeutic Target for Type-2 Diabetes
Kuo-Chen Chou
JOURNAL OF PROTEOME RESEARCH (2004) 3(6): 1284-1288

A proteomic analysis of malaria biology: integration of old literature and new technologies.
Sinden RE.
Int J Parasitol (2004) 34(13-14): 1441-50

Bioinformatic analysis of the urine proteome of acute allograft rejection.
O'riordan E, Orlova TN, Mei J J, Butt K, Chander PM, Rahman S, Mya M, Hu R, Momin J, Eng EW, Hampel DJ, Hartman B, Kretzler M, Delaney V, Goligorsky MS.
J Am Soc Nephrol (2004) 15(12): 3240-8

Global proteomic approach unmasks involvement of keratins 8 and 18 in the delivery of cystic fibrosis transmembrane conductance regulator (CFTR)/?F508-CFTR to the plasma membrane
Noélie Davezac, Danielle Tondelier, Joanna Lipecka, Pascale Fanen, France Demaugre, Janusz Debski, Michal Dadlez, André Schrattenholz, Michael A. Cahill, Aleksander Edelman
PROTEOMICS (2004) 4(12): 3833-3844

[Back to TOP]

Eukaryotic Cells And Tissues

Proteomic analysis of in vivo phosphorylated synaptic proteins.
Collins MO, Yu L, Coba MP, Husi H, Campuzano I, Blackstock WP, Choudhary JS, Grant SG.
J Biol Chem Early Edition: published 30-Nov-2004

Sexual Dimorphism of Rat Liver Nuclear Proteins: Regulatory Role Of Growth Hormone
Ekaterina V. Laz, Christopher A. Wiwi, and David J. Waxman
Mol Cell Proteomics (2004) 3(12): 1170-1180

Mitochondrial Proteomic Analysis of a Cell Line Model of Familial Amyotrophic Lateral Sclerosis
Kei Fukada, Fujian Zhang, Alexis Vien, Neil R. Cashman, and Haining Zhu
Mol Cell Proteomics (2004) 3(12): 1211-1223

[Back to TOP]

Prokaryotes

Transcriptomic and Proteomic Characterization of the Fur Modulon in the Metal-Reducing Bacterium Shewanella oneidensis.
Wan XF, Verberkmoes NC, McCue LA, Stanek D, Connelly H, Hauser LJ, Wu L, Liu X, Yan T, Leaphart A, Hettich RL, Zhou J, Thompson DK.
J Bacteriol (2004) 186(24): 8385-400

Correlation of proteomic and transcriptomic profiles of Staphylococcus aureus during the post-exponential phase of growth.
Scherl A, Francois P, Bento M, Deshusses JM, Charbonnier Y, Converset V, Huyghe A, Walter N, Hoogland C, Appel RD, Sanchez JC, Zimmermann-Ivol CG, Corthals GL, Hochstrasser DF, Schrenzel J.
J Microbiol Methods (2005) 60(2): 247-57

[Back to TOP]

Protein Array

Use of high-throughput protein array for profiling of differentially expressed proteins in normal and malignant breast tissue.
Hudelist G, Pacher-Zavisin M, Singer C, Holper T, Kubista E, Schreiber M, Manavi M, Bilban M, Czerwenka K.
Breast Cancer Res Treat (2004) 86(3): 283-93

Development and standardization of multiplexed antibody microarrays for use in quantitative proteomics.
Perlee LT, Christiansen J, Dondero R, Grimwade B, Lejnine S, Mullenix M, Shao W, Sorette M, Tchernev VT, Patel DD, Kingsmore SF.
Proteome Sci (2004) 2(1): 9

[Back to TOP]

Protein Characterization / PTMs

A mass spectrometric ?Western blot? to evaluate the correlations between histone methylation and histone acetylation
Kangling Zhang, Joseph S. Siino, Patrick R. Jones, Peter M. Yau, E. Morton Bradbury
PROTEOMICS (2004) 4(12): 3765-3775

Single cell proteomics for personalised medicine.
Diks SH, Peppelenbosch MP.
Trends Mol Med (2004) 10(12): 574-7

Defining the SUMO-modified proteome by multiple approaches in Saccharomyces cerevisiae.
Hannich JT, Lewis A, Kroetz MB, Li SJ, Heide H, Emili A, Hochstrasser M.
J Biol Chem Early Edition: published 6-Dec-2004

Characterization of Phosphorylation Sites on Histone H1 Isoforms by Tandem Mass Spectrometry
Benjamin A. Garcia, Scott A. Busby, Cynthia M. Barber, Jeffrey Shabanowitz, C. David Allis, and Donald F. Hunt
JOURNAL OF PROTEOME RESEARCH (2004) 3(6): 1219-1227

Isotope-Coded Affinity Tag (ICAT) Approach to Redox Proteomics: Identification and Quantitation of Oxidant-Sensitive Cysteine Thiols in Complex Protein Mixtures
Mahadevan Sethuraman, Mark E. McComb, Hua Huang, Sequin Huang, Tyler Heibeck, Catherine E. Costello, and Richard A. Cohen
JOURNAL OF PROTEOME RESEARCH (2004) 3(6): 1228-1233

Initial analysis of the phosphoproteome of chinese hamster ovary cells using electrophoresis.
Chen Z, Southwick K, Thulin CD.
J Biomol Tech (2004) 15(4): 249-56

[Back to TOP]

Protein-protein interaction

Identification of protein-protein interactions using in vivo cross-linking and mass spectrometry
Julian Vasilescu, Xuecui Guo, Juergen Kast
PROTEOMICS (2004) 4(12): 3845-3854

[Back to TOP]

Quantitation

Multiplexed Protein Quantitation in Saccharomyces cerevisiae Using Amine-reactive Isobaric Tagging Reagents
Philip L. Ross, Yulin N. Huang, Jason N. Marchese, Brian Williamson, Kenneth Parker, Stephen Hattan, Nikita Khainovski, Sasi Pillai, Subhakar Dey, Scott Daniels, Subhasish Purkayastha, Peter Juhasz, Stephen Martin, Michael Bartlet-Jones, Feng He, Allan Jacobson, and Darryl J. Pappin
Mol Cell Proteomics (2004) 3(12): 1154-1169

[Back to TOP]

Review

Current two-dimensional electrophoresis technology for proteomics
Angelika Görg, Walter Weiss, Michael J. Dunn
PROTEOMICS (2004) 4(12): 3665-3685

Challenges in mass spectrometry-based proteomics
Joerg Reinders, Urs Lewandrowski, Jan Moebius, Yvonne Wagner, Albert Sickmann
PROTEOMICS (2004) 4(12): 3686-3703

Zooming in: Fractionation strategies in proteomics
Taras Stasyk, Lukas A. Huber
PROTEOMICS (2004) 4(12): 3704-3716

Mass spectrometry and the search for moonlighting proteins.
Jeffery CJ.
Mass Spectrom Rev Early Edition: published 16-Dec-2004

Quantitative proteomics.
Linscheid MW.
Analytical and Bioanalytical Chemistry Early Edition: published 16-Dec-2004

Applying proteomics technology to platelet research.
Garcia A, Watson SP, Dwek RA, Zitzmann N.
Mass Spectrom Rev Early Edition: published 14-Dec-2004

Mining the receptorome.
Armbruster BN, Roth BL.
J Biol Chem Early Edition: published 8-Dec-2004

Recent advances in capillary separations for proteomics
Jonathan W. Cooper, Yueju Wang, Cheng S. Lee
ELECTROPHORESIS (2004) 25(23-24): 3913-3926

Quantitative protein profiling using antibody arrays
Richard Barry, Mikhail Soloviev
PROTEOMICS (2004) 4(12): 3717-3726

Towards a comprehensive understanding of Bacillus subtilis cell physiology by physiological proteomics
Michael Hecker, Uwe Völker
PROTEOMICS (2004) 4(12): 3727-3750

Vascular proteomics: Linking proteomic and metabolomic changes
Manuel Mayr, Ursula Mayr, Yuen-Li Chung, Xiaoke Yin, John R. Griffiths, Qingbo Xu
PROTEOMICS (2004) 4(12): 3751-3761

Toxicoproteomics: proteomics applied to toxicology and pathology.
Wetmore BA, Merrick BA.
Toxicol Pathol (2004) 32(6): 619-42

Proteomics: state of the art and its application in cardiovascular research.
Scobioala S, Klocke R, Michel G, Kuhlmann M, Nikol S.
Curr Med Chem (2004) 11(24): 3203-18

Recent advances in chemical genomics.
Darvas F, Dorman G, Krajcsi P, Puskas LG, Kovari Z, Lorincz Z, Urge L.
Curr Med Chem (2004) 11(23): 3119-45

[Back to TOP]

Methodology

A New Chemical Probe for Proteomics of Carbohydrate-Binding Proteins.
Ballell L, Alink KJ, Slijper M, Versluis C, Liskamp RM, Pieters RJ.
Chembiochem Early Edition: published 2-Dec-2004

Advances in isolation and characterization of homogeneous cell populations using laser microdissection.
Mizuarai S, Takahashi K, Kobayashi T, Kotani H.
Histol Histopathol (2005) 20(1): 139-46

Microarray platform for profiling enzyme activities in complex proteomes.
Sieber SA, Mondala TS, Head SR, Cravatt BF.
J Am Chem Soc (2004) 126(48): 15640-1

Depletion of the high-abundance plasma proteins.
Fountoulakis M, Juranville JF, Jiang L, Avila D, Roder D, Jakob P, Berndt P, Evers S, Langen H.
Amino Acids (2004) 27(3-4): 249-59

Identification of proteins by combination of size-exclusion chromatography with matrix-assisted laser desorption/ionization time-of-flight mass spectrometry and comparison of some desalting procedures for both intact proteins and their tryptic digests
Ji?í ?alplachta, Pavel ?ehulka, Josef Chmelík
Journal of Mass Spectrometry (2004) 39(12): 1395-1401

Definition and Characterization of a "Trypsinosome" from Specific Peptide Characteristics by Nano-HPLC-MS/MS and in Silico Analysis of Complex Protein Mixtures
Thierry Le Bihan, Mark D. Robinson, Ian I. Stewart, and Daniel Figeys
JOURNAL OF PROTEOME RESEARCH (2004) 3(6): 1138-1148

Reversed-Phase HPLC Separation of Human Serum Employing a Novel Saw-Tooth Gradient: Toward Multidimensional Proteome Analysis
Daniel L. Morris, Jr., Jennifer N. Sutton, Robert G. Harper, and Aaron T. Timperman
JOURNAL OF PROTEOME RESEARCH (2004) 3(6): 1149-1154

Integration of Jacobson's Pellicle Method into Proteomic Strategies for Plasma Membrane Proteins
Amir M. Rahbar and Catherine Fenselau
JOURNAL OF PROTEOME RESEARCH (2004) 3(6): 1267-1277

Fully automated online multi-dimensional protein profiling system for complex mixtures.
Fujii K, Nakano T, Hike H, Usui F, Bando Y, Tojo H, Nishimura T.
J Chromatogr A (2004) 1057(1-2): 107-13

Targeted degradation of proteins by small molecules: a novel tool for functional proteomics.
Zhang D, Baek SH, Ho A, Lee H, Jeong YS, Kim K.
Comb Chem High Throughput Screen (2004) 7(7): 689-97

Enhancing TOF/TOF-based de Novo Sequencing Capability for High Throughput Protein Identification with Amino Acid-Coded Mass Tagging
Wenqing Shui, Yinkun Liu, Huizhi Fan, Huimin Bao, Shufang Liang, Xian Chen
JOURNAL OF PROTEOME RESEARCH Early Edition: published 12/10/2004

[Back to TOP]

Meeting

Is it functional?
Katherine L. Pixton
PROTEOMICS (2004) 4(12): 3762-3764

Meetings: Proteomics 12/2004
PROTEOMICS (2004) 4(12): 4032

Calendar
Mol Cell Proteomics (2004) 3(12): 1224-1225

Editorial: IMMS Special Issue
Pietro Traldi
Journal of Mass Spectrometry (2004) 39(12): 1402

[Back to TOP]

Other

Current literature in mass spectrometry.
J Mass Spectrom (2004) 39(12): 1582-1587

Engineering HlyA hypersecretion in Escherichia coli based on proteomic and microarray analyses.
Lee PS, Lee KH.
Biotechnol Bioeng Early Edition: published 3-Dec-2004

[Home]
[About the Society] [Statutes] [Membership] [Committee]
[Career & Employment] [Links]
[News & Events] [SPS' Digest] [Jokeomics]
[Support & Award]