SPS' Digest

Issue 19, 3-Jun-2005

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Quick jumps to articles in: Bioinformatics (12) / Biological applications (25) / Biomedical and clinical applications (27) / Eukaryotic Cells And Tissues (6) / Prokaryotes (7) / Pharmacology and Toxicology (10) / Protein Array (9) / Protein Characterization - PTMs (12) / Protein-protein interaction (3) / Quantitation (4) / Review (17) / Methodology (29) / Books (3) / Meeting (2) / Other (10) /

In this issue, 170 articles have been selected from:

Anal Bioanal Chem, Early Edition, 18-May-2005 (1 article)
Anal Biochem, Volume 341, Issue 2, 2005 (1 article)
Anal Chem, Volume 77, Issue 10, 2005 (2 articles)
Appl Environ Microbiol, Volume 71, Issue 5, 2005 (1 article)
Aquat Toxicol, Early Edition, 30-Apr-2005 (1 article)
Biochem Soc Trans, Volume 33, Issue Pt 3, 2005 (2 articles)
Bioinformatics, Early Edition, 6-May-2005->24-May-2005 (3 articles)
Bioinformatics, Volume 21, Issue 10, 2005 (4 articles)
Brain Res, Volume 1044, Issue 2, 2005 (1 article)
Brief Funct Genomic Proteomic, Volume 4, Issue 1, 2005 (7 articles)
Cell Biol Toxicol, Volume 21, Issue 1, 2005 (1 article)
Cell Mol Life Sci, Volume 62, Issue 7-8, 2005 (1 article)
Chem Biol Interact, Early Edition, 14-May-2005 (1 article)
ChemBioChem, Volume 6, Issue 6, 2005 (1 article)
Clin Cancer Res, Volume 11, Issue 9, 2005 (1 article)
Clin Chim Acta, Early Edition, 13-May-2005->20-May-2005 (4 articles)
Comp Funct Genomics, Volume 6, Issue 4, 2005 (1 article)
Curr Opin Drug Discov Devel, Volume 8, Issue 3, 2005 (1 article)
Curr Opin Neurol, Volume 18, Issue 3, 2005 (1 article)
Drug Discov Today, Volume 10, Issues 9+10, 2005 (2 articles)
Electrophoresis, Early Edition, 3-May-2005->13-May-2005 (2 articles)
Electrophoresis, Volume 26, Issue 11, 2005 (2 articles)
Expert Rev Proteomics, Volume 2, Issue 2, 2005 (1 article)
FEMS Microbiol Lett, Volume 246, Issue 1, 2005 (1 article)
Genome Biology, Volume 6, Issue 6, 2005 (1 article)
Genomics Proteomics Bioinformatics, Volume 2, Issues 3+4, 2004 (5 articles)
Gynecol Oncol, Early Edition, 19-May-2005->20-May-2005 (2 articles)
Infect Immun, Volume 73, Issue 6, 2005 (2 articles)
Int J Gynaecol Obstet, Early Edition, 22-May-2005 (1 article)
J Agric Food Chem, Volume 53, Issue 11, 2005 (2 articles)
J Am Soc Mass Spectrom, Volume 16, Issue 6, 2005 (1 article)
J Chromatogr A, Volume 1070, Issue 1-2, 2005 (1 article)
J Chromatogr A, Volume 1072, Issue 2, 2005 (1 article)
J Chromatogr A, Volume 1073, Issue 1-2, 2005 (2 articles)
J Chromatogr B, Early Edition, 18-May-2005 (1 article)
J Clin Oncol, Volume 23, Issue 14, 2005 (1 article)
J Gastroenterol, Volume 40, Issue Suppl 16, 2005 (1 article)
J Hepatol, Early Edition, 26-Apr-2005 (1 article)
J Immunol Methods, Volume 299, Issue 1-2, 2005 (1 article)
J Mass Spectrom, Volume 40, Issue 5, 2005 (1 article)
J Proteome Res, Early Edition, 05/06/2005->06/03/2005 (19 articles)
JAMA, Volume 293, Issue 20, 2005 (1 article)
Kidney Int, Volume 67, Issue 6, 2005 (1 article)
Mass Spectrom Rev, Volume 24, Issue 4, 2005 (2 articles)
Methods Mol Med, Volume 111, 2005 (1 article)
Methods Mol Med, Volume 118, 2005 (1 article)
Mol Cell Proteomics, Volume 4, Issue 5, 2005 (10 articles)
Mol Plant Microbe Interact, Volume 18, Issue 5, 2005 (1 article)
Nat Biotechnol, Volume 23, Issue 5, 2005 (1 article)
Nat Methods, Volume 2, Issue 6, 2005 (1 article)
Neurochem Int, Early Edition, 18-May-2005 (1 article)
Neurosci Lett, Volume 381, Issue 3, 2005 (1 article)
Nucl. Acids Res., Volume 33, Issue 8, 2005 (1 article)
Plant Physiol, Early Edition, 20-May-2005 (1 article)
Planta, Early Edition, 10-May-2005 (1 article)
Proc Natl Acad Sci U S A, Early Edition, 9-May-2005->13-May-2005 (2 articles)
Proteome Sci, Volume 3, Issue 1, 2005 (1 article)
Proteomics, Volume 5, Issues 7+8, 2005 (54 articles)
Rapid Commun Mass Spectrom, Volume 19, Issue 12, 2005 (2 articles)
Toxicol In Vitro, Early Edition, 19-May-2005 (1 article)

Disclaimer: The selection and categorisation reflect the views and understandings of contributors (i.e. SPS members).

Quick jumps to articles in: Bioinformatics (12) / Biological applications (25) / Biomedical and clinical applications (27) / Eukaryotic Cells And Tissues (6) / Prokaryotes (7) / Pharmacology and Toxicology (10) / Protein Array (9) / Protein Characterization - PTMs (12) / Protein-protein interaction (3) / Quantitation (4) / Review (17) / Methodology (29) / Books (3) / Meeting (2) / Other (10) /

Bioinformatics

Refinement and prediction of protein prenylation motifs
Maurer-Stroh S, Eisenhaber F
Genome Biology (2005) 6(6): R55

Application of Relative Warp Analysis to the Evaluation of Two-Dimensional Gels in Proteomics: Studying Isoelectric Point and Relative Molecular Mass Variation
Ana M. Rodríguez-Piñeiro, Antonio Carvajal-Rodríguez, Emilio Rolán-Alvarez, Francisco J. Rodríguez-Berrocal, Mónica Martínez-Fernández, and María Páez de la Cadena
JOURNAL OF PROTEOME RESEARCH Early Edition: published 06/03/2005

Identification of shed proteins from chinese hamster ovary cells: Application of statistical confidence using human and mouse protein databases
Mamoun Ahram, Eric F. Strittmatter, Matthew E. Monroe, Joshua N. Adkins, Joel C. Hunter, John H. Miller, David L. Springer
PROTEOMICS (2005) 5(7): 1815-1826

Fast tandem mass spectra-based protein identification regardless of the number of spectra or potential modifications examined
Jayson Falkner and Philip Andrews
Bioinformatics (2005) 21(10): 2177-2184

Classification of bacterial species from proteomic data using combinatorial approaches incorporating artificial neural networks, cluster analysis and principal components analysis
L. Lancashire, O. Schmid, H. Shah, and G. Ball
Bioinformatics (2005) 21(10): 2191-2199

Ovarian cancer identification based on dimensionality reduction for high-throughput mass spectrometry data
J. S. Yu, S. Ongarello, R. Fiedler, X. W. Chen, G. Toffolo, C. Cobelli, and Z. Trajanoski
Bioinformatics (2005) 21(10): 2200-2209

A novel approach for clustering proteomics data using Bayesian fast Fourier transform
Halima Bensmail, Jennifer Golek, Michelle M. Moody, John O. Semmes, and Abdelali Haoudi
Bioinformatics (2005) 21(10): 2210-2224

Proteomic mass spectra classification using decision tree based ensemble methods
Geurts P, Fillet M, de Seny D, Meuwis MA, Malaise M, Merville MP, Wehenkel L
Bioinformatics Early Edition: published 12-May-2005

Algorithms for alignment of mass spectrometry proteomic data
Jeffries N
Bioinformatics Early Edition: published 6-May-2005

PROTICdb: A web-based application to store, track, query, and compare plant proteome data
Hélčne Ferry-Dumazet, Gwenn Houel, Pierre Montalent, Luc Moreau, Olivier Langella, Luc Negroni, Delphine Vincent, Céline Lalanne, Antoine de Daruvar, Christophe Plomion, Michel Zivy, Johann Joets
PROTEOMICS (2005) 5(8): 2069-2081

Large-scale analysis of human alternative protein isoforms: pattern classification and correlation with subcellular localization signals
Mitsuteru Nakao, Roberto A. Barrero, Yuri Mukai, Chie Motono, Makiko Suwa, and Kenta Nakai
Nucl. Acids Res. (2005) 33(8): 2355-2363

Comparative interactomics analysis of protein family interaction networks using PSIMAP (protein structural interactome map)
Park D, Lee S, Bolser D, Schroeder M, Lappe M, Oh D, Bhak J
Bioinformatics Early Edition: published 24-May-2005

Biological applications

Adaptation of Corynebacterium glutamicum to Ammonium Limitation: a Global Analysis Using Transcriptome and Proteome Techniques
Silberbach M, Schafer M, Huser AT, Kalinowski J, Puhler A, Kramer R, Burkovski A
Appl Environ Microbiol (2005) 71(5): 2391-402

Insights into the oxidative stress response in Francisella tularensis LVS and its mutant DeltaiglC1+2 by proteomics analysis
Lenco J, Pavkova I, Hubalek M, Stulik J
FEMS Microbiol Lett (2005) 246(1): 47-54

Carbonylation and glutathionylation of proteins in the blue mussel Mytilus edulis detected by proteomic analysis and Western blotting: Actin as a target for oxidative stress
McDonagh B, Tyther R, Sheehan D
Aquat Toxicol Early Edition: published 30-Apr-2005

Proteome analysis in the study of lymphoma cells
Raymonde Joubert-Caron, Michel Caron
Mass Spectrometry Reviews (2005) 24(4): 455-468

Use of a fluorescent phosphoprotein dye to characterize oxidative stress-induced signaling pathway components in macrophage and epithelial cultures exposed to diesel exhaust particle chemicals
Meiying Wang, Gary Guishan Xiao, Ning Li, Yongming Xie, Joseph A. Loo, Andre E. Nel
ELECTROPHORESIS (2005) 26(11): 2092-2108

Mass Spectrometric Analysis of the Schistosoma mansoni Tegumental Sub-proteome
Bas W. M. van Balkom, Renske A. van Gestel, Jos F. H. M. Brouwers, Jeroen Krijgsveld, Aloysius G. M. Tielens, Albert J. R. Heck, and Jaap J. van Hellemond
JOURNAL OF PROTEOME RESEARCH Early Edition: published 05/06/2005

Differential Expression of Proteins in Response to Ceramide-Mediated Stress Signal in Colon Cancer Cells by 2-D Gel Electrophoresis and MALDI-TOF-MS
M. Fillet, C. Cren-Olivé, A.-F. Renert, J. Piette, F. Vandermoere, Ch. Rolando, and M-P. Merville
JOURNAL OF PROTEOME RESEARCH Early Edition: published 05/13/2005

The Spatial Organization of Lipid Synthesis in the Yeast Saccharomyces cerevisiae Derived from Large Scale Green Fluorescent Protein Tagging and High Resolution Microscopy
Klaus Natter, Peter Leitner, Alexander Faschinger, Heimo Wolinski, Stephen McCraith, Stanley Fields, and Sepp D. Kohlwein
Mol Cell Proteomics (2005) 4(5): 662-672

Identifying Regulatory Subnetworks for a Set of Genes
Michelle S. Scott, Theodore Perkins, Scott Bunnell, Francois Pepin, David Y. Thomas, and Michael Hallett
Mol Cell Proteomics (2005) 4(5): 683-692

Activation of human T lymphocytes under conditions similar to those that occur during exposure to microgravity: A proteomics study
Angela Risso, Gianluca Tell, Carlo Vascotto, Adalberto Costessi, Simona Arena, Andrea Scaloni, Maria Elisabetta Cosulich
PROTEOMICS (2005) 5(7): 1827-1837

Prediction of G-Protein-Coupled Receptor Classes
Kuo-Chen Chou
JOURNAL OF PROTEOME RESEARCH Early Edition: published 06/03/2005

Two-dimensional gel electrophoresis characterization of the mouse leukocyte proteome, using a tri-reagent for protein extraction
Nataliya I. Lenchik, Dominic M. Desiderio, Ivan C. Gerling
PROTEOMICS (2005) 5(8): 2202-2209

Ampicillin/penicillin-binding protein interactions as a model drug-target system to optimize affinity pull-down and mass spectrometric strategies for target and pathway identification
Moritz von Rechenberg, Brian Kelly Blake, Yew-Seng J. Ho, Yuejun Zhen, Cindy Lou Chepanoske, Bonnie E. Richardson, Nafei Xu, Vladimir Kery
PROTEOMICS (2005) 5(7): 1764-1773

Proteomic changes associated with inactivation of the Candida glabrata ACE2 virulence-moderating gene
David Stead, Helen Findon, Zhikang Yin, Janet Walker, Laura Selway, Philip Cash, Bernard A. Dujon, Christophe Hennequin, Alistair J. P. Brown, Ken Haynes
PROTEOMICS (2005) 5(7): 1838-1848

Flower proteome: changes in protein spectrum during the advanced stages of rose petal development
Dafny-Yelin M, Guterman I, Menda N, Ovadis M, Shalit M, Pichersky E, Zamir D, Lewinsohn E, Adam Z, Weiss D, Vainstein A
Planta Early Edition: published 10-May-2005

Proteome Analysis of Primary Neurons and Astrocytes from Rat Cerebellum
Jae-Won Yang, Regina Rodrigo, Vicente Felipo, and Gert Lubec
JOURNAL OF PROTEOME RESEARCH Early Edition: published 05/20/2005

Proteomic identification of ubiquitinated proteins from human cells expressing His-tagged ubiquitin
Donald S. Kirkpatrick, Stephen F. Weldon, George Tsaprailis, Daniel C. Liebler, A. Jay Gandolfi
PROTEOMICS (2005) 5(8): 2104-2111

E7-expressing HaCaT keratinocyte cells are resistant to oxidative stress-induced cell death via the induction of catalase
Jung-Hyun Shim, Kyung-Joo Cho, Kyung-Ae Lee, Soo-Hyun Kim, Pyung-Keun Myung, Yong-Kyung Choe, Do-Young Yoon
PROTEOMICS (2005) 5(8): 2112-2122

Autopolyploidy in cabbage (Brassica oleracea L.) does not alter significantly the proteomes of green tissues
Warren Albertin, Philippe Brabant, Olivier Catrice, Frédérique Eber, Eric Jenczewski, Anne-Marie Chčvre, Hervé Thiellement
PROTEOMICS (2005) 5(8): 2131-2139

Proteomic analysis of the expression of proteins related to rice quality during caryopsis development and the effect of high temperature on expression
Shao-Kai Lin, Meng-Chi Chang, Yeou-Guang Tsai, Huu-Sheng Lur
PROTEOMICS (2005) 5(8): 2140-2156

Genomic and proteomic comparisons between bacterial and archaeal genomes and related comparisons with the yeast and fly genomes
Karlin S, Brocchieri L, Campbell A, Cyert M, Mrazek J
Proc Natl Acad Sci U S A Early Edition: published 9-May-2005

Proteome analysis of brown spider venom: Identification of loxnecrogin isoforms in Loxosceles gaucho venom
Leandro F. Machado, Sabrina Laugesen, Elvio D. Botelho, Carlos A. O. Ricart, Wagner Fontes, Katia C. Barbaro, Peter Roepstorff, Marcelo V. Sousa
PROTEOMICS (2005) 5(8): 2167-2176

A proteomic survey of rat cerebral cortical synaptosomes
Frank A. Witzmann, Randy J. Arnold, Fengju Bai, Petra Hrncirova, Mark W. Kimpel, Yehia S. Mechref, William J. McBride, Milos V. Novotny, Nathan M. Pedrick, Heather N. Ringham, Jay R. Simon
PROTEOMICS (2005) 5(8): 2177-2201

Comparative proteomic analysis of the rat spinal cord in inflammatory and neuropathic pain models
Kunz S, Tegeder I, Coste O, Marian C, Pfenninger A, Corvey C, Karas M, Geisslinger G, Niederberger E
Neurosci Lett (2005) 381(3): 289-93

Proteomic analysis of soybean root hairs after infection by Bradyrhizobium japonicum
Wan J, Torres M, Ganapathy A, Thelen J, DaGue BB, Mooney B, Xu D, Stacey G
Mol Plant Microbe Interact (2005) 18(5): 458-67

Biomedical and clinical applications

Effect of water-soluble fraction of cigarette smoke on human aortic endothelial cells - a proteomic approach
Raveendran M, Senthil D, Utama B, Shen Y, Wang J, Zhang Y, Wang XL
Cell Biol Toxicol (2005) 21(1): 27-40

Mining the tumor phosphoproteome for cancer markers
Lim YP
Clin Cancer Res (2005) 11(9): 3163-9

A Proteomic Analysis of Human Hemodialysis Fluid
Henrik Molina, Jakob Bunkenborg, G. Hanumanthu Reddy, Babylakshmi Muthusamy, Paul J. Scheel, and Akhilesh Pandey
Mol Cell Proteomics (2005) 4(5): 637-650

Quantitative Proteome Analysis of Human Plasma following in Vivo Lipopolysaccharide Administration Using 16O/18O Labeling and the Accurate Mass and Time Tag Approach
Wei-Jun Qian, Matthew E. Monroe, Tao Liu, Jon M. Jacobs, Gordon A. Anderson, Yufeng Shen, Ronald J. Moore, David J. Anderson, Rui Zhang, Steve E. Calvano, Stephen F. Lowry, Wenzhong Xiao, Lyle L. Moldawer, Ronald W. Davis, Ronald G. Tompkins, David G. Camp, II, Richard D. Smith, and the Inflammation and the Host Response to Injury Large Scale Collaborative Research Program
Mol Cell Proteomics (2005) 4(5): 700-709

Comparative proteomic analysis of peripheral blood eosinophils from healthy donors and atopic dermatitis patients with eosinophilia
Sun Woo Yoon, Tae Yoon Kim, Moon Hee Sung, Chul Joong Kim, Haryoung Poo
PROTEOMICS (2005) 5(7): 1987-1995

Proteomic Analysis Reveals Different Protein Changes during Endothelin-1- or Leukemic Inhibitory Factor-induced Hypertrophy of Cardiomyocytes in Vitro
Tammy M. Casey, Peter G. Arthur, and Marie A. Bogoyevitch
Mol Cell Proteomics (2005) 4(5): 651-661

Active Kinase Proteome Screening Reveals Novel Signal Complexity in Cardiomyopathy
Pasan Fernando, Wen Deng, Beata Pekalska, Yves DeRepentigny, Rashmi Kothary, John F. Kelly, and Lynn A. Megeney
Mol Cell Proteomics (2005) 4(5): 673-682

Evaluation of Biomarker Discovery Approaches to Detect Protein Biomarkers of Acute Renal Allograft Rejection
Hans Voshol, Nathalie Brendlen, Dieter Müller, Bruno Inverardi, Angélique Augustin, Charles Pally, Grazyna Wieczorek, Randall E. Morris, Friedrich Raulf, and Jan van Oostrum
JOURNAL OF PROTEOME RESEARCH Early Edition: published 06/03/2005

A rare and often unrecognized cerebromeningitis and hemodynamic disorder: A major cause of sudden death in somatic cell cloned piglets
Mi-Rung Park, Seong-Keun Cho, So-Young Lee, Yun-Jung Choi, Jong-Yi Park, Deug-Nam Kwon, Woo-Jin Son, Seung-Sam Paik, Teoan Kim, Yong-Mahn Han, Jin-Hoi Kim
PROTEOMICS (2005) 5(7): 1928-1939

A strategy for high-resolution protein identification in surface-enhanced laser desorption/ionization mass spectrometry: Calgranulin A and chaperonin 10 as protein markers for endometrial carcinoma
Jingzhong Guo, Eric C. C. Yang, Leroi DeSouza, Georg Diehl, Mary Joe Rodrigues, Alexander D. Romaschin, Terence J. Colgan, K. W. Michael Siu
PROTEOMICS (2005) 5(7): 1953-1966

Proteomic identification of Ku70/Ku80 autoantigen recognized by monoclonal antibody against hepatocellular carcinoma
John M. Luk, Yvonne C. F. Su, Stanley C. T. Lam, Carol K. Lee, Mei Yu Hu, Qing Yu He, George K. Lau, Fred W. S. Wong, Sheung-Tat Fan
PROTEOMICS (2005) 5(7): 1980-1986

Chronically inflamed synovium from spondyloarthropathy and rheumatoid arthritis investigated by protein expression profiling followed by tandem mass spectrometry
Kelly Tilleman, Katrien Van Beneden, Aline Dhondt, Ilse Hoffman, Filip De Keyser, Eric Veys, Dirk Elewaut, Dieter Deforce
PROTEOMICS (2005) 5(8): 2247-2257

Proteome analysis of human hepatocellular carcinoma tissues by two-dimensional difference gel electrophoresis and mass spectrometry
Cynthia R. M. Y. Liang, Chon Kar Leow, Jason C. H. Neo, Gek San Tan, Siaw Ling Lo, Justin W. E. Lim, Teck Keong Seow, Paul B. S. Lai, Maxey C. M. Chung
PROTEOMICS (2005) 5(8): 2258-2271

Differential Protein Expression Profiles of Gastric Epithelial Cells Following Helicobacter pylori Infection Using ProteinChips
Soumita Das, Johanna C. Sierra, Kizhake V. Soman, Giovanni Suarez, Amin A. Mohammad, Tu Anh T. Dang, Bruce A. Luxon, and Victor E. Reyes ^,
JOURNAL OF PROTEOME RESEARCH Early Edition: published 05/20/2005

Global Protein Shotgun Expression Profiling of Proliferating MCF-7 Breast Cancer Cells
Charanjit Sandhu, Michael Connor, Thomas Kislinger, Joyce Slingerland, and Andrew Emili
JOURNAL OF PROTEOME RESEARCH Early Edition: published 05/20/2005

Utilizing Human Blood Plasma for Proteomic Biomarker Discovery
Jon M. Jacobs, Joshua N. Adkins, Wei-Jun Qian, Tao Liu, Yufeng Shen, David G. Camp II, and Richard D. Smith
JOURNAL OF PROTEOME RESEARCH Early Edition: published 05/20/2005

Genomic and proteomic profiling of lung cancers: lung cancer classification in the age of targeted therapy
Meyerson M, Carbone D
J Clin Oncol (2005) 23(14): 3219-26

Proteomic identification of proteins oxidized by Abeta(1-42) in synaptosomes: Implications for Alzheimer's disease
Boyd-Kimball D, Castegna A, Sultana R, Poon HF, Petroze R, Lynn BC, Klein JB, Butterfield DA
Brain Res (2005) 1044(2): 206-15

High abundance protein profiling of cystic fibrosis lung epithelial cells
Harvey B. Pollard, Xiao-duo Ji, Catherine Jozwik, David M. Jacobowitz
PROTEOMICS (2005) 5(8): 2210-2226

Urine protein patterns can serve as diagnostic tools in patients with IgA nephropathy
Haubitz M, Wittke S, Weissinger EM, Walden M, Rupprecht HD, Floege J, Haller H, Mischak H
Kidney Int (2005) 67(6): 2313-20

Evaluation of matrix-assisted laser desorption/ionization-time of flight mass spectrometry proteomic profiling: identification of alpha 2-HS glycoprotein B-chain as a biomarker of diet
Breeana L. Mitchell, Yutaka Yasui, Johanna W. Lampe, Philip R. Gafken, Paul D. Lampe
PROTEOMICS (2005) 5(8): 2238-2246

Proteomic technology and delayed interval delivery in multiple pregnancies
Buhimschi CS, Pettker CM, Magloire LK, Martin R, Norwitz E, Funai E, Buhimschi IA
Int J Gynaecol Obstet Early Edition: published 22-May-2005

Proteomic analysis of a preneoplastic phenotype in ovarian surface epithelial cells derived from prophylactic oophorectomies
He QY, Zhou Y, Wong E, Ehlen TG, Auersperg N, Chiu JF, Wong AS
Gynecol Oncol Early Edition: published 20-May-2005

Peripheral Blood and Pleural Fluid Mononuclear Cell Responses to Low-Molecular-Mass Secretory Polypeptides of Mycobacterium tuberculosis in Human Models of Immunity to Tuberculosis
Sable SB, Kumar R, Kalra M, Verma I, Khuller GK, Dobos K, Belisle JT
Infect Immun (2005) 73(6): 3547-58

Proteomic analysis of anti-cancer effects by paclitaxel treatment in cervical cancer cells
Lee KH, Yim EK, Kim CJ, Namkoong SE, Um SJ, Park JS
Gynecol Oncol Early Edition: published 19-May-2005

Proteomic approach to the diagnosis of acute coronary syndrome: Preliminary results
Di Serio F, Amodio G, Ruggieri E, De Sario R, Varraso L, Antonelli G, Pansini N
Clin Chim Acta Early Edition: published 19-May-2005

New urinary EPO drug testing method using two-dimensional gel electrophoresis
Khan A, Grinyer J, Truong ST, Breen EJ, Packer NH
Clin Chim Acta Early Edition: published 19-May-2005

Eukaryotic Cells And Tissues

Proteome analysis of mouse primary astrocytes
Yang JW, Suder P, Silberring J, Lubec G
Neurochem Int Early Edition: published 18-May-2005

Proteomics of breast cancer: Enhanced expression of cytokeratin19 in human epidermal growth factor receptor type 2 positive breast tumors
Dao-Hai Zhang, Lee Kian Tai, Lee Lee Wong, Sunil K. Sethi, Evelyn S. C. Koay
PROTEOMICS (2005) 5(7): 1797-1805

Shotgun proteome analysis of protein cleavage in apoptotic cells
Bernd Thiede, Achim Treumann, Annikki Kretschmer, Jana Söhlke, Thomas Rudel
PROTEOMICS (2005) 5(8): 2123-2130

A proteome analysis of the yeast response to the herbicide 2,4-dichlorophenoxyacetic acid
Miguel C. Teixeira, Pedro M. Santos, Alexandra R. Fernandes, Isabel Sá-Correia
PROTEOMICS (2005) 5(7): 1889-1901

Proteome analysis of Arabidopsis thaliana by two-dimensional gel electrophoresis and matrix-assisted laser desorption/ionisation-time of flight mass spectrometry
Patrick Giavalisco, Eckhard Nordhoff, Thomas Kreitler, Klaus-Dieter Klöppel, Hans Lehrach, Joachim Klose, Johan Gobom
PROTEOMICS (2005) 5(7): 1902-1913

Comprehensive proteomics in yeast using chromatographic fractionation, gas phase fractionation, protein gel electrophoresis, and isoelectric focusing
Linda Breci, Emily Hattrup, Matthew Keeler, Jessica Letarte, Roxanne Johnson, Paul A. Haynes
PROTEOMICS (2005) 5(8): 2018-2028

Prokaryotes

Comparative Secretome Analyses of Three Bacillus anthracis Strains with Variant Plasmid Contents
Lamonica JM, Wagner M, Eschenbrenner M, Williams LE, Miller TL, Patra G, Delvecchio VG
Infect Immun (2005) 73(6): 3646-58

Proteome analysis of Escherichia coli using high-performance liquid chromatography and Fourier transform ion cyclotron resonance mass spectrometry
Christian Ihling, Andrea Sinz
PROTEOMICS (2005) 5(8): 2029-2042

Bacterial protein microarrays for identification of new potential diagnostic markers for Neisseria meningitidis infections
Sigrid Steller, Philipp Angenendt, Dolores J. Cahill, Sigrid Heuberger, Hans Lehrach, Jürgen Kreutzberger
PROTEOMICS (2005) 5(8): 2048-2055

Proteomic analysis of anti-Francisella tularensis LVS antibody response in murine model of tularemia
Jana Havlasová, Lenka Hernychová, Martin Brychta, Martin Hubálek, Jurai Lenco, Pär Larsson, Margaretha Lundqvist, Mats Forsman, Zulana Kro?ová, Jiri Stulík, Aks Macela
PROTEOMICS (2005) 5(8): 2090-2103

A proteomic view of Bifidobacterium infantis generated by multi-dimensional chromatography coupled with tandem mass spectrometry
Beatrice Vitali, Valerie Wasinger, Patrizia Brigidi, Michael Guilhaus
PROTEOMICS (2005) 5(7): 1859-1867

Proteome investigation of the global regulatory role of ?54 in response to gentisate induction in Pseudomonas alcaligenes NCIMB 9867
Bing Zhao, Chew Chieng Yeo, Chit Laa Poh
PROTEOMICS (2005) 5(7): 1868-1876

Subcellular proteomic analysis of host-pathogen interactions using human monocytes exposed to Yersinia pestis and Yersinia pseudotuberculosis
Celia G. Zhang, Arlene D. Gonzales, Megan W. Choi, Brett A. Chromy, J. Patrick Fitch, Sandra L. McCutchen-Maloney
PROTEOMICS (2005) 5(7): 1877-1888

Pharmacology and Toxicology

Bacterial proteomics and its role in antibacterial drug discovery
Heike Brötz-Oesterhelt, Julia Elisabeth Bandow, Harald Labischinski
Mass Spectrometry Reviews (2005) 24(4): 549-565

Proteomic and biochemical analysis of the mouse liver microsomes
Kanaeva IP, Petushkova NA, Lisitsa AV, Lokhov PG, Zgoda VG, Karuzina II, Archakov AI
Toxicol In Vitro Early Edition: published 19-May-2005

Proteomics Reveals that Proteins Expressed During the Early Stage of Bacillus anthracis Infection Are Potential Targets for the Development of Vaccines and Drugs
Huang CM, Elmets CA, Tang DC, Li F, Yusuf N
Genomics Proteomics Bioinformatics (2004) 2(3): 143-51

Effect of water-soluble fraction of cigarette smoke on human aortic endothelial cells - a proteomic approach
Raveendran M, Senthil D, Utama B, Shen Y, Wang J, Zhang Y, Wang XL
Cell Biol Toxicol (2005) 21(1): 27-40

Fast analysis of low molecular mass compounds present in snake venom: identification of ten new pyroglutamate-containing peptides
Wermelinger LS, Dutra DL, Oliveira-Carvalho AL, Soares MR, Bloch C Jr, Zingali RB
Rapid Commun Mass Spectrom (2005) 19(12): 1703-1708

Towards a proteomic definition of CoArtem action in Plasmodium falciparum malaria
Michael Makanga, Patrick G. Bray, Paul Horrocks, Stephen A. Ward
PROTEOMICS (2005) 5(7): 1849-1858

Use of two-dimensional gel electrophoresis in predictive toxicology: Identification of potential early protein biomarkers in chemically induced hepatocarcinogenesis
Kerstin Fella, Matthias Glückmann, Jürgen Hellmann, Michael Karas, Peter-Jürgen Kramer, Michaela Kröger
PROTEOMICS (2005) 5(7): 1914-1927

Use of a fluorescent phosphoprotein dye to characterize oxidative stress-induced signaling pathway components in macrophage and epithelial cultures exposed to diesel exhaust particle chemicals
Wang M, Xiao GG, Li N, Xie Y, Loo JA, Nel AE
Electrophoresis Early Edition: published 3-May-2005

Systems analysis of transcriptome and proteome in retinoic acid/arsenic trioxide-induced cell differentiation/apoptosis of promyelocytic leukemia
Zheng PZ, Wang KK, Zhang QY, Huang QH, Du YZ, Zhang QH, Xiao DK, Shen SH, Imbeaud S, Eveno E, Zhao CJ, Chen YL, Fan HY, Waxman S, Auffray C, Jin G, Chen SJ, Chen Z, Zhang J
Proc Natl Acad Sci U S A Early Edition: published 13-May-2005

Human epidermal cell protein responses to arsenite treatment in culture
Lee C, Lee YM, Rice RH
Chem Biol Interact Early Edition: published 14-May-2005

Protein Array

Immobilisation of oligo-peptidic probes for microarray implementation: Characterisation by FTIR, Atomic Force Microscopy and 2D fluorescence
Soultani-Vigneron S, Dugas V, Rouillat MH, Fedolliere J, Duclos MC, Vnuk E, Phaner-Goutorbe M, Bulone V, Martin JR, Wallach J, Cloarec JP
J Chromatogr B Analyt Technol Biomed Life Sci Early Edition: published 18-May-2005

Biocompatibility of surfaces for antibody microarrays: design of macroporous silicon substrates
Steinhauer C, Ressine A, Marko-Varga G, Laurell T, Borrebaeck CA, Wingren C
Anal Biochem (2005) 341(2): 204-13

Competition on Nitrocellulose-immobilized Antibody Arrays: From Bacterial Protein Binding Assay to Protein Profiling in Breast Cancer Cells
Garabet Yeretssian, Michele Lecocq, Guillaume Lebon, Helen C. Hurst, and Vehary Sakanyan
Mol Cell Proteomics (2005) 4(5): 605-617

High Throughput Substrate Specificity Profiling of Serine and Cysteine Proteases Using Solution-phase Fluorogenic Peptide Microarrays
Dhaval N. Gosalia, Cleo M. Salisbury, Jonathan A. Ellman, and Scott L.Diamond
Mol Cell Proteomics (2005) 4(5): 626-636

Distinct proteome features of plasma microparticles
Ming Jin, Garry Drwal, Tran Bourgeois, Joel Saltz, Haifeng M. Wu
PROTEOMICS (2005) 5(7): 1940-1952

Versatile protein microarray based on carbohydrate-binding modules
Keren Ofir, Yevgeny Berdichevsky, Itai Benhar, Ronit Azriel-Rosenfeld, Raphael Lamed, Yoav Barak, Edward A. Bayer, Ely Morag
PROTEOMICS (2005) 5(7): 1806-1814

Optimised two-dimensional electrophoresis procedures for the protein characterisation of structural tissues
Andrew Hopkinson, Richard S. McIntosh, Robert Layfield, John Keyte, Harminder S. Dua, Paddy J. Tighe
PROTEOMICS (2005) 5(7): 1967-1979

Comparative analysis of protein aggregates by blue native electrophoresis and subsequent sodium dodecyl sulfate-polyacrylamide gel electrophoresis in a three-dimensional geometry gel
Josef Stegemann, Robert Ventzki, Andrea Schrödel, Ario de Marco
PROTEOMICS (2005) 5(8): 2002-2009

Peptide microarrays for the detection of molecular interactions in cellular signal transduction
Oda Stoevesandt, Martin Elbs, Karsten Köhler, Annemarie C. Lellouch, Rainer Fischer, Thomas André, Roland Brock
PROTEOMICS (2005) 5(8): 2010-2017

Protein Characterization / PTMs

Characterisation of protein microheterogeneity and protein complexes using on-chip immunoaffinity purification-mass spectrometry
Schweigert, Florian J
Briefings in Functional Genomics and Proteomics (2005) 4(1): 7-15

Patterns of Protein Oxidation in Arabidopsis Seeds and during Germination
Job C, Rajjou L, Lovigny Y, Belghazi M, Job D
Plant Physiol Early Edition: published 20-May-2005

Mining the tumor phosphoproteome for cancer markers
Lim YP
Clin Cancer Res (2005) 11(9): 3163-9

The Post-translational Modifications of the Nuclear Encoded Subunits of Complex I from Bovine Heart Mitochondria
Joe Carroll, Ian M. Fearnley, J. Mark Skehel, Michael J. Runswick, Richard J. Shannon, Judy Hirst, and John E. Walker
Mol Cell Proteomics (2005) 4(5): 693-699

Sample preparation and digestion for proteomic analyses using spin filters
Linda L. Manza, Sheryl L. Stamer, Amy-Joan L. Ham, Simona G. Codreanu, Daniel C. Liebler
PROTEOMICS (2005) 5(7): 1742-1745

High sequence coverage by in-capillary proteolysis of native proteins and simultaneous analysis of the resulting peptides by nanoelectrospray ionization-mass spectrometry and tandem mass spectrometry
Gottfried Pohlentz, Stefanie Kölbl, Jasna Peter-Katalini?
PROTEOMICS (2005) 5(7): 1758-1763

Structural determination of N-linked glycans by matrix-assisted laser desorption/ionization and electrospray ionization mass spectrometry
David J. Harvey
PROTEOMICS (2005) 5(7): 1774-1786

Recent developments in structural proteomics for protein structure determination
Hsuan-Liang Liu, Jyh-Ping Hsu
PROTEOMICS (2005) 5(8): 2056-2068

Determination of partial amino acid composition from tandem mass spectra for use in peptide identification strategies
Ian Shadforth, Kieran Todd, Daniel Crowther, Conrad Bessant
PROTEOMICS (2005) 5(7): 1787-1796

Mapping of phosphorylation sites of nuclear corepressor receptor interacting protein 140 by liquid chromatography-tandem mass spectroscopy
M. D. Mostaqul Huq, Shaukat Ali Khan, Sung Wook Park, Li-Na Wei
PROTEOMICS (2005) 5(8): 2157-2166

The human brain mannose 6-phosphate glycoproteome: A complex mixture composed of multiple isoforms of many soluble lysosomal proteins (vol. 5, issue 6, DOI 10.1002/200401054)
David E. Sleat, Henry Lackland, Yanhong Wang, Istvan Sohar, Gang Xiao, Hong Li, Peter Lobel
PROTEOMICS (2005) 5(8): 2272

Tagging-via-Substrate Strategy for Probing O-GlcNAc Modified Proteins
Robert Sprung, Animesh Nandi, Yue Chen, Sung Chan Kim, Deb Barma, John R. Falck, and Yingming Zhao
JOURNAL OF PROTEOME RESEARCH Early Edition: published 05/20/2005

Protein-protein interaction

Algorithms for protein interaction networks
Lappe M, Holm L
Biochem Soc Trans (2005) 33(Pt 3): 530-4

Identification and characterization of protein subcomplexes in yeast
Jens Hollunder, Andreas Beyer, Thomas Wilhelm
PROTEOMICS (2005) 5(8): 2082-2089

Proteomic profiling of cellular proteins interacting with the hepatitis C virus core protein
Su-Min Kang, Min-Jung Shin, Jung-Hee Kim, Jong-Won Oh
PROTEOMICS (2005) 5(8): 2227-2237

Quantitation

Mass spectrometry-based quantitative proteomic profiling
Yan, Wei; Chen, Sharon S
Briefings in Functional Genomics and Proteomics (2005) 4(1): 27-38

Simultaneous Quantification and Identification Using (18)O Labeling with an Ion Trap Mass Spectrometer and the Analysis Software Application "ZoomQuant"
Hicks WA, Halligan BD, Slyper RY, Twigger SN, Greene AS, Olivier M
J Am Soc Mass Spectrom (2005) 16(6): 916-25

Intact-protein-based High-resolution Three-dimensional Quantitative Analysis System for Proteome Profiling of Biological Fluids
Hong Wang, Shawn G. Clouthier, Vladimir Galchev, David E. Misek, Ulrich Duffner, Chang-Ki Min, Rong Zhao, John Tra, Gilbert S. Omenn, James L. M. Ferrara, and Samir M. Hanash
Mol Cell Proteomics (2005) 4(5): 618-625

Saturation labeling with cysteine-reactive cyanine fluorescent dyes provides increased sensitivity for protein expression profiling of laser-microdissected clinical specimens
Olga Greengauz-Roberts, Hubert Stöppler, Sachiyo Nomura, Hirokazu Yamaguchi, James R. Goldenring, Robert H. Podolsky, Jeffrey R. Lee, William S. Dynan
PROTEOMICS (2005) 5(7): 1746-1757

Review

From targets to leads: the importance of advanced data analysis for decision support in drug discovery
Fischer HP, Heyse S
Curr Opin Drug Discov Devel (2005) 8(3): 334-46

Advances in clinical cancer proteomics: SELDI-ToF-mass spectrometry and biomarker discovery
Seibert, Volker; Ebert, Matthias P. A.; Buschmann, Thomas
Briefings in Functional Genomics and Proteomics (2005) 4(1): 16-26

SPR-MS in functional proteomics
Buijs, Jos; Franklin, Gary C
Briefings in Functional Genomics and Proteomics (2005) 4(1): 39-47

Moss (Physcomitrella patens) functional genomics - Gene discovery and tool development, with implications for crop plants and human health
Reski, Ralf; Frank, Wolfgang
Briefings in Functional Genomics and Proteomics (2005) 4(1): 48-57

Proteomics approaches to biomarker detection
Zhou, Ming; Conrads, Thomas P.; Veenstra, Timothy D
Briefings in Functional Genomics and Proteomics (2005) 4(1): 69-75

Solution phase isoelectric fractionation in the multi-compartment electrolyser: A divide and conquer strategy for the analysis of complex proteomes
Smejkal, Gary B.; Lazarev, Alexander
Briefings in Functional Genomics and Proteomics (2005) 4(1): 76-81

Mass spectrometry-based proteomics in the life sciences
Lane CS
Cell Mol Life Sci (2005) 62(7-8): 848-69

Application of proteomics in the study of tumor metastasis
Cai Z, Chiu JF, He QY
Genomics Proteomics Bioinformatics (2004) 2(3): 152-66

Genomics, proteomics, metabolomics: what is in a word for multiple sclerosis?
Ibrahim SM, Gold R
Curr Opin Neurol (2005) 18(3): 231-5

Application of Proteomic Analysis to the Study of Azole Antifungal Resistance in Candida albicans
Hooshdaran MZ, Hilliard GM, Rogers PD
Methods Mol Med (2005) 118: 57-70

A brief review of computational gene prediction methods
Wang Z, Chen Y, Li Y
Genomics Proteomics Bioinformatics (2004) 2(4): 216-21

Disease proteomics toward bedside reality
Nishimura T, Ogiwara A, Fujii K, Kawakami T, Kawamura T, Anyouji H, Kato H
J Gastroenterol (2005) 40(Suppl 16): 7-13

Predicting protein subcellular localization: past, present, and future
Donnes P, Hoglund A
Genomics Proteomics Bioinformatics (2004) 2(4): 209-15

The clinical application of proteomics
Colantonio DA, Chan DW
Clin Chim Acta Early Edition: published 13-May-2005

The continuing evolution of shotgun proteomics
Swanson SK, Washburn MP
Drug Discov Today (2005) 10(10): 719-25

Proteomics in the study of liver pathology
Parent R, Beretta L
J Hepatol Early Edition: published 26-Apr-2005

FT-ICR mass spectrometry in the drug discovery process
Zhang J, McCombie G, Guenat C, Knochenmuss R
Drug Discov Today (2005) 10(9): 635-42

Methodology

Serum protein profiling by miniaturized solid-phase extraction and matrix-assisted laser desorption/ionization mass spectrometry
Callesen AK, Mohammed S, Bunkenborg J, Kruse TA, Cold S, Mogensen O, Christensen RD, Vach W, Jorgensen PE, Jensen ON
Rapid Commun Mass Spectrom (2005) 19(12): 1578-1586

An efficient proteomics-based approach for the screening of autoantibodies
Canelle L, Bousquet J, Pionneau C, Deneux L, Imam-Sghiouar N, Caron M, Joubert-Caron R
J Immunol Methods (2005) 299(1-2): 77-89

Analytical assessment of MALDI-TOF Imaging Mass Spectrometry on thin histological samples. An insight in proteome investigation
Maddalo G, Petrucci F, Iezzi M, Pannellini T, Del Boccio P, Ciavardelli D, Biroccio A, Forli F, Di Ilio C, Ballone E, Urbani A, Federici G
Clin Chim Acta Early Edition: published 20-May-2005

Fast analysis of low molecular mass compounds present in snake venom: identification of ten new pyroglutamate-containing peptides
Wermelinger LS, Dutra DL, Oliveira-Carvalho AL, Soares MR, Bloch C Jr, Zingali RB
Rapid Commun Mass Spectrom (2005) 19(12): 1703-1708

Use of proteomics to study chemosensitivity
Poland J, Wandschneider S, Urbani A, Bernardini S, Federici G, Sinha P
Methods Mol Med (2005) 111: 267-81

Effects of chromatography conditions on intact protein separations for top-down proteomics
Wang Y, Balgley BM, Rudnick PA, Lee CS
J Chromatogr A (2005) 1073(1-2): 35-41

A simplified monobuffer multidimensional chromatography for high-throughput proteome fractionation
Guerrier L, Lomas L, Boschetti E
J Chromatogr A (2005) 1073(1-2): 25-33

Immobilisation of oligo-peptidic probes for microarray implementation: Characterisation by FTIR, Atomic Force Microscopy and 2D fluorescence
Soultani-Vigneron S, Dugas V, Rouillat MH, Fedolliere J, Duclos MC, Vnuk E, Phaner-Goutorbe M, Bulone V, Martin JR, Wallach J, Cloarec JP
J Chromatogr B Analyt Technol Biomed Life Sci Early Edition: published 18-May-2005

Biocompatibility of surfaces for antibody microarrays: design of macroporous silicon substrates
Steinhauer C, Ressine A, Marko-Varga G, Laurell T, Borrebaeck CA, Wingren C
Anal Biochem (2005) 341(2): 204-13

Proteomic analysis of colorectal cancer: prefractionation strategies using two-dimensional free-flow electrophoresis
Robert L. Moritz, Anita R. Skandarajah, Hong Ji, Richard J. Simpson
Comparative and Functional Genomics (2005) 6(4): 236-243

A modified protein precipitation procedure for efficient removal of albumin from serum
Yi-Yun Chen, Shu-Yu Lin, Yuh-Ying Yeh, He-Hsuan Hsiao, Chi-Yue Wu, Shui-Tsung Chen, Andrew H.-J. Wang
ELECTROPHORESIS (2005) 26(11): 2117-2127

Global Whole-Cell FTICR Mass Spectrometric Proteomics Analysis of the Heat Shock Response in the Radioresistant Bacterium Deinococcus radiodurans
Amy K. Schmid, Mary S. Lipton, Heather Mottaz, Matthew E. Monroe, Richard D. Smith, and Mary E. Lidstrom
JOURNAL OF PROTEOME RESEARCH Early Edition: published 05/06/2005

Postfractionation for Enhanced Proteomic Analyses: Routine Electrophoretic Methods Increase the Resolution of Standard 2D-PAGE
R. Hussain Butt and Jens R. Coorssen
JOURNAL OF PROTEOME RESEARCH Early Edition: published 05/06/2005

A systematical analysis of tryptic Peptide identification with reverse phase liquid chromatography and electrospray ion trap mass spectrometry
Sun W, Wu S, Wang X, Zheng D, Gao Y
Genomics Proteomics Bioinformatics (2004) 2(3): 174-83

Dual-purpose sample trap for on-line strong cation-exchange chromatography/reversed-phase liquid chromatography/tandem mass spectrometry for shotgun proteomics. Application to the human Jurkat T-cell proteome
Kang D, Nam H, Kim YS, Moon MH
J Chromatogr A (2005) 1070(1-2): 193-200

A ?de-streaking? method for two-dimensional electrophoresis using the reducing agent tris(2-carboxyethyl)-phosphine hydrochloride and alkylating agent vinylpyridine
Fengju Bai, Sheng Liu, Frank A. Witzmann
PROTEOMICS (2005) 5(8): 2043-2047

Optimal Replication and the Importance of Experimental Design for Gel-Based Quantitative Proteomics
Sybille M. N. Hunt, Mervyn R. Thomas, Lucille T. Sebastian, Susanne K. Pedersen, Rebecca L. Harcourt, Andrew J. Sloane, and Marc R. Wilkins
JOURNAL OF PROTEOME RESEARCH Early Edition: published 05/13/2005

Improved Protein Identification through the Use of Unstained Gels
David R. Loiselle, William R. Thelin, Carol E. Parker, Nedyalka N. Dicheva, Barry A. Kesner, Viorel Mocanu, Frank Wang, Sharon L. Milgram, Maria R. Esteban Warren, and Christoph H. Borchers
JOURNAL OF PROTEOME RESEARCH Early Edition: published 05/20/2005

Direct Tandem Mass Spectrometry Reveals Limitations in Protein Profiling Experiments for Plasma Biomarker Discovery
John M. Koomen, Donghui Li, Lian-chun Xiao, Thomas C. Liu, Kevin R. Coombes, James Abbruzzese, and Ryuji Kobayashi
JOURNAL OF PROTEOME RESEARCH Early Edition: published 05/20/2005

Integrated Approach for Manual Evaluation of Peptides Identified by Searching Protein Sequence Databases with Tandem Mass Spectra
Yue Chen, Sung Won Kwon, Sung Chan Kim, and Yingming Zhao
JOURNAL OF PROTEOME RESEARCH Early Edition: published 05/27/2005

Evaluating Preparative Isoelectric Focusing of Complex Peptide Mixtures for Tandem Mass Spectrometry-Based Proteomics: A Case Study in Profiling Chromatin-Enriched Subcellular Fractions in Saccharomyces cerevisiae
Xie H, Bandhakavi S, Griffin TJ
Anal Chem (2005) 77(10): 3198-207

Automated 20 kpsi RPLC-MS and MS/MS with Chromatographic Peak Capacities of 1000-1500 and Capabilities in Proteomics and Metabolomics
Shen Y, Zhang R, Moore RJ, Kim J, Metz TO, Hixson KK, Zhao R, Livesay EA, Udseth HR, Smith RD
Anal Chem (2005) 77(10): 3090-100

Large-bore particle-entrapped monolithic precolumns prepared by a sol-gel method for on-line peptides trapping and preconcentration in multidimensional liquid chromatography system for proteome analysis
Gu X, Wang Y, Zhang X
J Chromatogr A (2005) 1072(2): 223-32

Statistical design of experiments as a tool in mass spectrometry
Riter LS, Vitek O, Gooding KM, Hodge BD, Julian RK Jr
J Mass Spectrom (2005) 40(5): 565-579

An effective skeletal muscle prefractionation method to remove abundant structural proteins for optimized two-dimensional gel electrophoresis
Jarrold B, Demuth J, Greis K, Burt T, Wang F
Electrophoresis Early Edition: published 3-May-2005

A streamlined approach to high-throughput proteomics
Stephens AN, Quach P, Harry EJ
Expert Rev Proteomics (2005) 2(2): 173-85

Target selection of soluble protein complexes for structural proteomics studies
Shen W, Yun S, Tam B, Dalal K, Pio FF
Proteome Sci (2005) 3(1): 3

The development of the DIGE system: 2D fluorescence difference gel analysis technology
Marouga R, David S, Hawkins E
Anal Bioanal Chem Early Edition: published 18-May-2005

Quantitative validation of different protein precipitation methods in proteome analysis of blood platelets
Zellner M, Winkler W, Hayden H, Diestinger M, Eliasen M, Gesslbauer B, Miller I, Chang M, Kungl A, Roth E, Oehler R
Electrophoresis Early Edition: published 13-May-2005

Books

Bioinformatics: A Practical Guide to the Analysis of Genes and Proteins. Edited by Andreas D. Baxevanis and B. F. Francis Ouellette
Artem Cherkasov
ChemBioChem (2005) 6(6): 1128-1129

Book Review: Dictionary of Bioinformatics and Computational Biology. By Hancock, John M. and Zvelebil, Marketa J. (Eds)
Des Higgins
PROTEOMICS (2005) 5(7): 1996

Book Review: RNA Interference in Practice. By Schepers, Ute
Michael Hamacher
PROTEOMICS (2005) 5(8): 2273

[Back to TOP]

Meeting

Meetings Diary: Proteomics 7/2005
PROTEOMICS (2005) 5(7): 1997-1999

Meetings Diary: Proteomics 8/2005
PROTEOMICS (2005) 5(8): 2274-2276

[Back to TOP]

Other

Location proteomics: a systems approach to subcellular location
Murphy RF
Biochem Soc Trans (2005) 33(Pt 3): 535-8

Detection of bladder cancer using a proteomic assay
Ciatto S
JAMA (2005) 293(20): 2467; author reply 2467

Analysis of Lupinus albus Storage Proteins by Two-Dimensional Electrophoresis and Mass Spectrometry
Wait R, Gianazza E, Brambilla D, Eberini I, Morandi S, Arnoldi A, Sirtori CR
J Agric Food Chem (2005) 53(11): 4599-4606

Systematic interpretation of genetic interactions using protein networks
Kelley R, Ideker T
Nat Biotechnol (2005) 23(5): 561-6

One- and Two-Dimensional Electrophoretic Identification of IgE-Binding Polypeptides of Lupinus albus and Other Legume Seeds
Magni C, Herndl A, Sironi E, Scarafoni A, Ballabio C, Restani P, Bernardini R, Novembre E, Vierucci A, Duranti M
J Agric Food Chem (2005) 53(11): 4567-4571

Mass spectrometry: gaining mass appeal in proteomics
Gershon D
Nat Methods (2005) 2(6): 465-72

Product News: Proteomics 8/2005
PROTEOMICS (2005) 5(8): 2277-2278

Identification of Proteins Expressing Differences among Isolates of Meloidogyne spp. (Nematoda: Meloidogynidae) by Nano-Liquid Chromatography Coupled to Ion-Trap Mass Spectrometry
E. Calvo, P. Flores-Romero, J. A. López, and A. Navas
JOURNAL OF PROTEOME RESEARCH Early Edition: published 05/20/2005

Infrared Mass Spectrometric Imaging below the Diffraction Limit
Stefan L. Luxembourg, Liam A. McDonnell, Todd H. Mize, and Ron M. A. Heeren
JOURNAL OF PROTEOME RESEARCH Early Edition: published 05/27/2005

Proteomic Analysis of the Outer Membrane of Anabaena sp. Strain PCC 7120
Suncana Moslavac, Rolf Bredemeier, Oliver Mirus, Bernhard Granvogl, Lutz A. Eichacker, and Enrico Schleiff
JOURNAL OF PROTEOME RESEARCH Early Edition: published 05/27/2005

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