SPS' Digest

Issue 24, 4-Nov-2005

[Current issue] [Archives] [Search] [Email alert] [Submit article]

Quick jumps to articles in: Bioinformatics (17) / Biological applications (21) / Biomedical and clinical applications (26) / Eukaryotic Cells And Tissues (18) / Prokaryotes (6) / Pharmacology and Toxicology (1) / Protein Array (1) / Protein Characterization - PTMs (9) / Protein-protein interaction (4) / Quantitation (4) / Review (18) / Methodology (39) / Books (1) / Other (8) /

In this issue, 160 articles have been selected from:

Am J Pathol, Volume 167, Issue 4, 2005 (1 article)
Anal Bioanal Chem, Early Edition, 27-Oct-2005 (1 article)
Anal Biochem, Volume 345, Issue 1, 2005 (1 article)
Anal Chem, Volume 77, Issues 19+20+21, 2005 (11 articles)
Aquat Toxicol, Early Edition, 21-Oct-2005 (1 article)
Auton Neurosci, Early Edition, 21-Sep-2005 (1 article)
BMC Biochem, Volume 6, Issue 1, 2005 (1 article)
BMC Bioinformatics, Volume 6, Issue 1, 2005 (1 article)
BMC Genomics, Volume 6, Issue 1, 2005 (1 article)
Biochem Biophys Res Commun, Early Edition, 21-Oct-2005 (1 article)
Biochem Biophys Res Commun, Volume 337, Issue 4, 2005 (1 article)
Biochemistry, Volume 44, Issue 42, 2005 (1 article)
Biochim Biophys Acta, Early Edition, 2005 Sep 29 (1 article)
Bioinformatics, Volume 21, Issues 19+21, 2005 (5 articles)
Bioscience Reports, Volume 25, Issue 1-2, 2005 (8 articles)
Biotechnol Bioeng, Early Edition, 26-Sep-2005 (1 article)
Cancer Invest, Volume 23, Issue 5, 2005 (1 article)
Cell Death Differ, Early Edition, 28-Oct-2005 (1 article)
Clin Chem, Early Edition, 20-Oct-2005->27-Oct-2005 (2 articles)
Clin Sci (Lond), Volume 109, Issue 5, 2005 (1 article)
Exp Oncol, Volume 27, Issue 3, 2005 (1 article)
Expert Rev Proteomics, Volume 2, Issue 5, 2005 (13 articles)
FEBS Lett, Early Edition, 21-Sep-2005 (1 article)
Fungal Genet Biol, Early Edition, 2005 Oct 12 (1 article)
Gastroenterology, Volume 129, Issue 4, 2005 (1 article)
Glycobiology, Early Edition, 20-Oct-2005 (1 article)
Growth Factors, Volume 23, Issue 3, 2005 (1 article)
Gynecol Oncol, Early Edition, 2005 Oct 13 (1 article)
IDrugs, Volume 8, Issue 10, 2005 (1 article)
J Biomed Biotechnol, Volume 2005, Issue 3, 2005 (1 article)
J Biomol Struct Dyn, Volume 23, Issue 3, 2005 (1 article)
J Chem Inf Model, Volume 45, Issue 5, 2005 (1 article)
J Chromatogr A, Early Edition, 14-Oct-2005 (1 article)
J Chromatogr B, Early Edition, 14-Oct-2005->17-Oct-2005 (2 articles)
J Neurochem, Early Edition, 29-Sep-2005 (1 article)
J Nutr, Volume 135, Issue 11, 2005 (2 articles)
J Periodontol, Volume 76, Issue 10, 2005 (1 article)
J Proteome Res, Early Edition, 10/14/2005 (8 articles)
J Proteome Res, Volume 4, Issue 5, 2005 (44 articles)
J Sep Sci, Volume 28, Issue 14, 2005 (2 articles)
Mol Cell Proteomics, Volume 4, Issue 10, 2005 (14 articles)
Nat Rev Mol Cell Biol, Volume 6, Issue 9, 2005 (1 article)
Nature, Early Edition, 28-Sep-2005 (1 article)
Oncogene, Early Edition, 26-Sep-2005 (1 article)
Oral Microbiol Immunol, Volume 20, Issue 6, 2005 (1 article)
Photosynth Res, Volume 78, Issue 3, 2003 (7 articles)
Plant Cell, Early Edition, 21-Oct-2005 (1 article)
Plant Mol Biol, Volume 59, Issue 4, 2005 (1 article)
Plant Physiol, Volume 139, Issue 2, 2005 (1 article)
Proteomics, Early Edition, 30-Sep-2005 (1 article)
Rapid Commun Mass Spectrom, Volume 19, Issue 21, 2005 (1 article)
Semin Arthritis Rheum, Volume 35, Issue 2, 2005 (1 article)
Theriogenology, Volume 64, Issue 7, 2005 (1 article)
Vet Res Commun, Volume 29, Issue Suppl 2, 2005 (1 article)

Disclaimer: The selection and categorisation reflect the views and understandings of contributors (i.e. SPS members).

Quick jumps to articles in: Bioinformatics (17) / Biological applications (21) / Biomedical and clinical applications (26) / Eukaryotic Cells And Tissues (18) / Prokaryotes (6) / Pharmacology and Toxicology (1) / Protein Array (1) / Protein Characterization - PTMs (9) / Protein-protein interaction (4) / Quantitation (4) / Review (18) / Methodology (39) / Books (1) / Other (8) /

Bioinformatics

A Bioinformatics Perspective on Proteomics: Data Storage, Analysis, and Integration
Kremer Andreas, Schneider Reinhard, Terstappen Georg
Bioscience Reports (2005) 25(1-2): 95-106

AUDENS: A Tool for Automated Peptide de Novo Sequencing
Jonas Grossmann, Franz F. Roos, Mark Cieliebak, Zsuzsanna Lipták, Lucas K. Mathis, Matthias Müller, Wilhelm Gruissem, and Sacha Baginsky
JOURNAL OF PROTEOME RESEARCH (2005) 4(5): 1768-1774

Identification of Protein Fragments as Pattern Features in MALDI-MS Analyses of Serum
Lisa J. Zimmerman, Gregory R. Wernke, Richard M. Caprioli, and Daniel C. Liebler
JOURNAL OF PROTEOME RESEARCH (2005) 4(5): 1672-1680

STEM: A Software Tool for Large-Scale Proteomic Data Analyses
Takashi Shinkawa, Masato Taoka, Yoshio Yamauchi, Tohru Ichimura, Hiroyuki Kaji, Nobuhiro Takahashi, and Toshiaki Isobe
JOURNAL OF PROTEOME RESEARCH (2005) 4(5): 1826-1831

Parallel Tandem: A Program for Parallel Processing of Tandem Mass Spectra Using PVM or MPI and X!Tandem
Dexter T. Duncan, Robertson Craig, and Andrew J. Link
JOURNAL OF PROTEOME RESEARCH (2005) 4(5): 1842-1847

i-Tracker: For quantitative proteomics using iTRAQ
Shadforth IP, Dunkley TP, Lilley KS, Bessant C
BMC Genomics (2005) 6(1): 145

Spatial and Spectral Correlations in MALDI Mass Spectrometry Images by Clustering and Multivariate Analysis
Gregor McCombie, Dieter Staab, Markus Stoeckli, and Richard Knochenmuss
ANALYTICAL CHEMISTRY (2005) 77(19): 6118-6124

Analysis of mass spectral serum profiles for biomarker selection
Habtom W. Ressom, Rency S. Varghese, Mohamed Abdel-Hamid, Sohair Abdel-Latif Eissa, Daniel Saha, Lenka Goldman, Emanuel F. Petricoin, Thomas P. Conrads, Timothy D. Veenstra, Christopher A. Loffredo, and Radoslav Goldman
Bioinformatics (2005) 21(21): 4039-4045

Data pre-processing in liquid chromatography-mass spectrometry-based proteomics
Xiang Zhang, John M. Asara, Jiri Adamec, Mourad Ouzzani, and Ahmed K. Elmagarmid
Bioinformatics (2005) 21(21): 4054-4059

TARGET: a new method for predicting protein subcellular localization in eukaryotes
Chittibabu Guda and Shankar Subramaniam
Bioinformatics (2005) 21(21): 3963-3969

GLYCOCIENCES.de: An Internet Portal to Support Glycomics and Glycobiology Research
Lutteke T, Bohne-Lang A, Loss A, Goetz T, Frank M, von der Lieth CW
Glycobiology Early Edition: published 20-Oct-2005

Robust accurate identification of peptides (RAId): deciphering MS2 data using a structured library search with de novo based statistics
Gelio Alves and Yi-Kuo Yu
Bioinformatics (2005) 21(19): 3726-3732

Statistical challenges in the analysis of two-dimensional difference gel electrophoresis experiments using DeCyderTM
Imola K. Fodor, David O. Nelson, Michelle Alegria-Hartman, Kristin Robbins, Richard G. Langlois, Kenneth W. Turteltaub, Todd H. Corzett, and Sandra L. McCutchen-Maloney
Bioinformatics (2005) 21(19): 3733-3740

Novel characterization of proteomics maps by sequential neighborhoods of protein spots
Randic M, Novic M, Vracko M
J Chem Inf Model (2005) 45(5): 1205-13

Prediction of beta-barrel membrane proteins by searching for restricted domains
Mirus O, Schleiff E
BMC Bioinformatics (2005) 6(1): 254

Combining experimental and predicted datasets for determination of the subcellular location of proteins in Arabidopsis
Heazlewood JL, Tonti-Filippini J, Verboom RE, Millar AH
Plant Physiol (2005) 139(2): 598-609

Protein sequence modules
Aharonovsky E, Trifonov EN
J Biomol Struct Dyn (2005) 23(3): 237-42

Biological applications

Investigation of the Mouse Serum Proteome
Brian L. Hood, Ming Zhou, King C. Chan, David A. Lucas, Grace J. Kim, Haleem J. Issaq, Timothy D. Veenstra, and Thomas P. Conrads
JOURNAL OF PROTEOME RESEARCH (2005) 4(5): 1561-1568

Proteomic and Transcriptomic Analyses of Macrophages with an Increased Resistance to Oxidized Low Density Lipoprotein (oxLDL)-induced Cytotoxicity Generated by Chronic Exposure to oxLDL
James P. Conway and Michael Kinter
Mol Cell Proteomics (2005) 4(10): 1522-1540

Proteome Approach to Characterize the Methylmalonate-Semialdehyde Dehydrogenase that Is Regulated by Gibberellin
Naoki Tanaka, Hideyuki Takahashi, Hidemi Kitano, Makoto Matsuoka, Shoichiro Akao, Hirofumi Uchimiya, and Setsuko Komatsu
JOURNAL OF PROTEOME RESEARCH (2005) 4(5): 1575-1582

Comprehensive Phosphoproteome Analysis in Rice and Identification of Phosphoproteins Responsive to Different Hormones/Stresses
Monowar Khan, Hironori Takasaki, and Setsuko Komatsu
JOURNAL OF PROTEOME RESEARCH (2005) 4(5): 1592-1599

Characterization of the Drosophila melanogaster Mitochondrial Proteome
Jana Alonso, Javier M. Rodriguez, Luis Alberto Baena-López, and Juan F. Santarén
JOURNAL OF PROTEOME RESEARCH (2005) 4(5): 1636-1645

Identification and Analysis of Multivalent Proteolytically Resistant Peptides from Gluten: Implications for Celiac Sprue
Lu Shan, Shuo-Wang Qiao, Helene Arentz-Hansen, Øyvind Molberg, Gary M. Gray, Ludvig M. Sollid, and Chaitan Khosla
JOURNAL OF PROTEOME RESEARCH (2005) 4(5): 1732-1741

Order from Chaos: Observing Hormesis at the Proteome Level
Milan Randi and Ernesto Estrada
JOURNAL OF PROTEOME RESEARCH Early Edition: published 10/14/2005

Proteomics of chloroplast envelope membranes
Rolland N, Ferro M, Seigneurin-Berny D, Garin J, Douce R, Joyard J
Photosynth Res (2003) 78(3): 205-30

Differential protein expression profiles in anterior gills of Eriocheir sinensis during acclimation to cadmium
Silvestre F, Dierick JF, Dumont V, Dieu M, Raes M, Devos P
Aquat Toxicol Early Edition: published 21-Oct-2005

Proteomic analysis of the cyanobacterium Anabaena sp. strain PCC7120 with two-dimensional gel electrophoresis and amino-terminal sequencing
Sazuka T
Photosynth Res (2003) 78(3): 279-91

Thylakoid membrane proteomics
Whitelegge JP
Photosynth Res (2003) 78(3): 265-77

The proteome of the chloroplast lumen of higher plants
Kieselbach T, Schroder WP
Photosynth Res (2003) 78(3): 249-64

Insights into the stress response and sulfur metabolism revealed by proteome analysis of a Chlorobium tepidum mutant lacking the Rubisco-like protein
Hanson TE, Tabita FR
Photosynth Res (2003) 78(3): 231-48

Shotgun proteomic analysis of a chromatophore-enriched preparation from the purple phototrophic bacterium Rhodopseudomonas palustris
Fejes AP, Yi EC, Goodlett DR, Beatty JT
Photosynth Res (2003) 78(3): 195-203

Update on chloroplast proteomics
Schroder WP, Kieselbach T
Photosynth Res (2003) 78(3): 181-93

A proteomic approach to investigate immunity against R. Equi in foals
Roncada P, Bonizzi L, Fortin R, Menandro ML, Greppi GF
Vet Res Commun (2005) 29(Suppl 2): 215-9

Identification of membrane-associated proteins regulated by the arbuscular mycorrhizal symbiosis
Valot B, Dieu M, Recorbet G, Raes M, Gianinazzi S, Dumas-Gaudot E
Plant Mol Biol (2005) 59(4): 565-80

Functional Differentiation of Bundle Sheath and Mesophyll Maize Chloroplasts Determined by Comparative Proteomics
Majeran W, Cai Y, Sun Q, van Wijk KJ
Plant Cell Early Edition: published 21-Oct-2005

Identification of growth factor-regulated proteins using 2D electrophoresis and mass spectrometry
Saridaki A, Panayotou G
Growth Factors (2005) 23(3): 223-32

A reference map of the Arabidopsis thaliana mature pollen proteome
Noir S, Brautigam A, Colby T, Schmidt J, Panstruga R
Biochem Biophys Res Commun (2005) 337(4): 1257-66

Bcl-xL-Mediated Changes in Metabolic Pathways of Breast Cancer Cells: From Survival in the Blood Stream to Organ-Specific Metastasis
Espana L, Martin B, Aragues R, Chiva C, Oliva B, Andreu D, Sierra A
Am J Pathol (2005) 167(4): 1125-1137

Biomedical and clinical applications

Clinical Proteomics: From Biomarker Discovery and Cell Signaling Profiles to Individualized Personal Therapy
Calvo Katherine, Liotta Lance, Petricoin Emanuel
Bioscience Reports (2005) 25(1-2): 107-125

An Approach to Studying Lung Cancer-related Proteins in Human Blood
Ting Xiao, Wantao Ying, Lei Li, Zhi Hu, Ying Ma, Liyan Jiao, Jinfang Ma, Yun Cai, Dongmei Lin, Suping Guo, Naijun Han, Xuebing Di, Min Li, Dechao Zhang, Kai Su, Jinsong Yuan, Hongwei Zheng, Meixia Gao, Jie He, Susheng Shi, Wuju Li, Ningzhi Xu, Husheng Zhang, Yan Liu, Kaitai Zhang, Yanning Gao, Xiaohong Qian, and Shujun Cheng
Mol Cell Proteomics (2005) 4(10): 1480-1486

Primary Cell Cultures Arising from Normal Kidney and Renal Cell Carcinoma Retain the Proteomic Profile of Corresponding Tissues
Roberto A. Perego, Cristina Bianchi, Matteo Corizzato, Barbara Eroini, Barbara Torsello, Cristina Valsecchi, Andrea Di Fonzo, Nicoletta Cordani, Paolo Favini, Stefano Ferrero, Marina Pitto, Cecilia Sarto, Fulvio Magni, Francesco Rocco, and Paolo Mocarelli
JOURNAL OF PROTEOME RESEARCH (2005) 4(5): 1503-1510

The Platelet Microparticle Proteome
Benjamin A. Garcia, David M. Smalley, HyungJun Cho, Jeffrey Shabanowitz, Klaus Ley, and Donald F. Hunt
JOURNAL OF PROTEOME RESEARCH (2005) 4(5): 1516-1521

Proteomic Evidence for Roles for Nucleolin and Poly[ADP-ribosyl] Transferase in Drug Resistance
Zongming Fu and Catherine Fenselau
JOURNAL OF PROTEOME RESEARCH (2005) 4(5): 1583-1591

Dietary Effects of Copper and Iron Deficiency on Rat Intestine: A Differential Display Proteome Analysis
Alessandra Tosco, Rosa Anna Siciliano, Giuseppina Cacace, Maria Fiorella Mazzeo, Roberta Capone, Antonio Malorni, Arturo Leone, and Liberato Marzullo
JOURNAL OF PROTEOME RESEARCH (2005) 4(5): 1781-1788

Comparative Plasma Proteome Analysis of Lymphoma-Bearing SJL Mice
Vadiraja B. Bhat, Man Ho Choi, John S. Wishnok, and Steven R. Tannenbaum
JOURNAL OF PROTEOME RESEARCH (2005) 4(5): 1814-1825

Allergome: the characterization of allergens based on a 2D gel electrophoresis approach
Helene Chardin, Gabriel Peltre
Expert Review of Proteomics (2005) 2(5): 757-765

Oral Cancer Plasma Tumor Marker Identified with Bead-Based Affinity Fractionated Proteomic Technology
Cheng AJ, Chen LC, Chien KY, Chen YJ, Chang JT, Wang HM, Liao CT, Chen IH
Clin Chem Early Edition: published 20-Oct-2005

Uncovering early markers of cardiac disease by proteomics: avoiding (heart) failure!
Anthony O Gramolini, Andrew Emili
Expert Review of Proteomics (2005) 2(5): 631-634

Towards the application of proteomics in renal disease diagnosis
Vidal BC, Bonventre JV, I-Hong Hsu S
Clin Sci (Lond) (2005) 109(5): 421-30

Proteomic analysis of colorectal cancer: discovering novel biomarkers
Anita R Skandarajah, Robert L Moritz, Joe J Tjandra, Richard J Simpson
Expert Review of Proteomics (2005) 2(5): 681-692

Cancer proteomics: many technologies, one goal
Thomas P Conrads, Brian L Hood, Emmanuel F Petricoin III, Lance A Liotta, Timothy D Veenstra
Expert Review of Proteomics (2005) 2(5): 693-703

Characterization of Proteins in Human Pancreatic Cancer Serum Using Differential Gel Electrophoresis and Tandem Mass Spectrometry
Kenneth H. Yu, Anil K. Rustgi, and Ian A. Blair
JOURNAL OF PROTEOME RESEARCH (2005) 4(5): 1742-1751

Acute and long-term proteome changes induced by oxidative stress in the developing brain
Kaindl AM, Sifringer M, Zabel C, Nebrich G, Wacker MA, Felderhoff-Mueser U, Endesfelder S, von der Hagen M, Stefovska V, Klose J, Ikonomidou C
Cell Death Differ Early Edition: published 28-Oct-2005

Application of Proteomic Technology in Identifying Pancreatic Secretory Trypsin Inhibitor Variants in Urine of Patients with Pancreatitis
Valmu L, Paju A, Lempinen M, Kemppainen E, Stenman UH
Clin Chem Early Edition: published 27-Oct-2005

Proteomic Analysis of Protein Components in Periodontal Ligament Fibroblasts
Reichenberg E, Redlich M, Cancemi P, Zaks B, Pitaru S, Fontana S, Pucci-Minafra I, Palmon A
J Periodontol (2005) 76(10): 1645-1653

Characterization of Pepsinogen C as a Potential Biomarker for Gastric Cancer Using a Histo-Proteomic Approach
Christian Melle, Günther Ernst, Bettina Schimmel, Annett Bleul, Roland Kaufmann, Merten Hommann, Konrad K. Richter, Wolfgang Daffner, Utz Settmacher, Uwe Claussen, and Ferdinand von Eggeling
JOURNAL OF PROTEOME RESEARCH (2005) 4(5): 1799-1804

New nutrition, proteomics, and how both can enhance studies in cancer prevention and therapy
Kim H
J Nutr (2005) 135(11): 2715-8

Proteomic analysis reveals changes in the liver protein pattern of rats exposed to dietary folate deficiency
Chanson A, Sayd T, Rock E, Chambon C, Sante-Lhoutellier V, Potier de Courcy G, Brachet P
J Nutr (2005) 135(11): 2524-9

The role of expression of the components of proteome in the formation of molecular profile of human ovarian carcinoma A2780 cells sensitive and resistant to cisplatin
Chekhun VF, Lukyanova NY, Urchenko OV, Kulik GI
Exp Oncol (2005) 27(3): 191-5

Proteomic profiling and neurodegeneration in west-nile-virus-infected neurons
Dhingra V, Li Q, Allison AB, Stallknecht DE, Fu ZF
J Biomed Biotechnol (2005) 2005(3): 271-9

Proteomic profiling of cerebrospinal fluid identifies biomarkers for amyotrophic lateral sclerosis
Ranganathan S, Williams E, Ganchev P, Gopalakrishnan V, Lacomis D, Urbinelli L, Newhall K, Cudkowicz ME, Brown RH Jr, Bowser R
J Neurochem Early Edition: published 29-Sep-2005

Postoperative serum proteomic profiles may predict metastatic relapse in high-risk primary breast cancer patients receiving adjuvant chemotherapy
Goncalves A, Esterni B, Bertucci F, Sauvan R, Chabannon C, Cubizolles M, Bardou VJ, Houvenaegel G, Jacquemier J, Granjeaud S, Meng XY, Fung ET, Birnbaum D, Maraninchi D, Viens P, Borg JP
Oncogene Early Edition: published 26-Sep-2005

Pancreatic cancer proteome: the proteins that underlie invasion, metastasis, and immunologic escape
Chen R, Yi EC, Donohoe S, Pan S, Eng J, Cooke K, Crispin DA, Lane Z, Goodlett DR, Bronner MP, Aebersold R, Brentnall TA
Gastroenterology (2005) 129(4): 1187-97

Using proteomic approaches to identify new biomarkers for detection and monitoring of ovarian cancer
Kong F, Nicole White C, Xiao X, Feng Y, Xu C, He D, Zhang Z, Yu Y
Gynecol Oncol Early Edition: published 2005 Oct 13

Eukaryotic Cells And Tissues

Proteomic analysis of secreted proteins from Trichoderma harzianum Identification of a fungal cell wall-induced aspartic protease
Suarez MB, Sanz L, Chamorro MI, Rey M, Gonzalez FJ, Llobell A, Monte E
Fungal Genet Biol Early Edition: published 2005 Oct 12

Initial transcriptome and proteome analyses of low culture temperature-induced expression in CHO cells producing erythropoietin
Baik JY, Lee MS, An SR, Yoon SK, Joo EJ, Kim YH, Park HW, Lee GM
Biotechnol Bioeng Early Edition: published 26-Sep-2005

Proteome analysis of isolated myenteric plexus reveals significant changes in protein expression during postnatal development
Hagl CI, Thil O, Holland-Cunz S, Faissner R, Wandschneider S, Schnolzer M, Lohr M, Schafer KH
Auton Neurosci Early Edition: published 21-Sep-2005

Proteomic analysis of hypothalamic proteins of high and low egg production strains of chickens
Kuo YM, Shiue YL, Chen CF, Tang PC, Lee YP
Theriogenology (2005) 64(7): 1490-502

Proteomic Analysis of Cellular Response to Osmotic Stress in Thick Ascending Limb of Henle's Loop (TALH) Cells
Hassan Dihazi, Abdul R. Asif, Nitin K. Agarwal, Yuliana Doncheva, and Gerhard A. Muller
Mol Cell Proteomics (2005) 4(10): 1445-1458

Characterization of Mouse Spleen Cells by Subtractive Proteomics
Francisco J. Dieguez-Acuna, Scott A. Gerber, Shohta Kodama, Joshua E. Elias, Sean A. Beausoleil, Denise Faustman, and Steven P. Gygi
Mol Cell Proteomics (2005) 4(10): 1459-1470

Microglial Activation Induced by Neurodegeneration: A Proteomic Analysis
Yong Zhou, Yan Wang, Monika Kovacs, Jinghua Jin, and Jing Zhang
Mol Cell Proteomics (2005) 4(10): 1471-1479

Proteomic Analysis of Human Neutrophil Granules
George Lominadze, David W. Powell, Greg C. Luerman, Andrew J. Link, Richard A. Ward, and Kenneth R. McLeish
Mol Cell Proteomics (2005) 4(10): 1503-1521

Concentrations of Glycolytic Enzymes and Other Cytosolic Proteins in the Diffusible Fraction of a Vertebrate Muscle Proteome
David W. Maughan, Josh A. Henkin, and Jim O. Vigoreaux
Mol Cell Proteomics (2005) 4(10): 1541-1549

Human Tissue Profiling with Multidimensional Protein Identification Technology
Gerard Cagney, Stephen Park, Clement Chung, Bianca Tong, Colm O'Dushlaine, Denis C. Shields, and Andrew Emili
JOURNAL OF PROTEOME RESEARCH (2005) 4(5): 1757-1767

Characterization of Vacuolar Membrane Proteins Changed in Rice Root Treated with Gibberellin
Hirosato Konishi, Masayoshi Maeshima, and Setsuko Komatsu
JOURNAL OF PROTEOME RESEARCH (2005) 4(5): 1775-1780

High Throughput Identification of Potential Arabidopsis Mitogen-activated Protein Kinases Substrates
Tanja Feilner, Claus Hultschig, Justin Lee, Svenja Meyer, Richard G. H. Immink, Andrea Koenig, Alexandra Possling, Harald Seitz, Allan Beveridge, Dierk Scheel, Dolores J. Cahill, Hans Lehrach, Jurgen Kreutzberger, and Birgit Kersten
Mol Cell Proteomics (2005) 4(10): 1558-1568

Steatosis-Induced Proteomic Changes in Liver Mitochondria Evidenced by Two-Dimensional Differential In-Gel Electrophoresis
Pierre Douette, Rachel Navet, Pascal Gerkens, Edwin de Pauw, Pierre Leprince, Claudine Sluse-Goffart, and Francis E. Sluse
JOURNAL OF PROTEOME RESEARCH Early Edition: published 10/14/2005

Understanding protein trafficking in plant cells through proteomics
Songqin Pan, Clay J Carter, Natasha V Raikhel
Expert Review of Proteomics (2005) 2(5): 781-792

Proteomics of plasma membrane microdomains
Francesca Raimondo, Paolo Ceppi, Katia Guidi, Massimo Masserini, Claudia Foletti, Marina Pitto
Expert Review of Proteomics (2005) 2(5): 793-807

Proteomic characterization of skin and epidermis in response to environmental agents
Chun-Ming Huang, Hui Xu, Chao-Cheng Wang, Craig A Elmets
Expert Review of Proteomics (2005) 2(5): 809-820

Fractionation and identification of proteins by 2-DE and MS: towards a proteomic analysis of Plasmodium falciparum
Gelhaus C, Fritsch J, Krause E, Leippe M
Proteomics Early Edition: published 30-Sep-2005

Proteomics of organelles and large cellular structures
Yates JR 3rd, Gilchrist A, Howell KE, Bergeron JJ
Nat Rev Mol Cell Biol (2005) 6(9): 702-14

Prokaryotes

Identification and Characterization of the Sulfolobus solfataricus P2 Proteome
Poh Kuan Chong and Phillip C. Wright
JOURNAL OF PROTEOME RESEARCH (2005) 4(5): 1789-1798

Francisella tularensis Proteome: Low Levels of ASB-14 Facilitate the Visualization of Membrane Proteins in Total Protein Extracts
Susan M. Twine, Nadia C. S. Mykytczuk, Mireille Petit, Tammy-Lynn Tremblay, J. Wayne Conlan, and John F. Kelly
JOURNAL OF PROTEOME RESEARCH (2005) 4(5): 1848-1854

The Protein Expression of Streptococcus pyogenes Is Significantly Influenced by Human Plasma
Björn P. Johansson, Fredrik Levander, Ulrich von Pawel-Rammingen, Tord Berggård, Lars Björck, and Peter James
JOURNAL OF PROTEOME RESEARCH Early Edition: published 10/14/2005

A searchable database for proteomes of oral microorganisms
Nakano Y, Shibata Y, Kawada M, Kojima M, Fukamachi H, Shibata Y, Okano S, Matsushima K, Abiko Y, Yamashita Y
Oral Microbiol Immunol (2005) 20(6): 344-8

Evaluation of the role of sigma B in Mycobacterium smegmatis
Mukherjee R, Chatterji D
Biochem Biophys Res Commun Early Edition: published 21-Oct-2005

Proteomics-Based Identification of Outer-Membrane Proteins Responsible for Import of Macromolecules in Sphingomonas sp. A1: Alginate-Binding Flagellin on the Cell Surface,
Wataru Hashimoto, Jinshan He, Yushin Wada, Hirokazu Nankai, Bunzo Mikami, and Kousaku Murata
BIOCHEMISTRY (2005) 44(42): 13783-13794

Pharmacology and Toxicology

Systems toxicology: applications of toxicogenomics, transcriptomics, proteomics and metabolomics in toxicology
Wilbert HM Heijne, Anne S Kienhuis, Ben van Ommen, Rob H Stierum, John P Groten
Expert Review of Proteomics (2005) 2(5): 767-780

Protein Array

Protein Arrays in Functional Genome Research
Maercker Christian
Bioscience Reports (2005) 25(1-2): 57-70

Protein Characterization / PTMs

Simple modification of a protein database for mass spectral identification of N-linked glycopeptides
Atwood JA 3rd, Sahoo SS, Alvarez-Manilla G, Weatherly DB, Kolli K, Orlando R, York WS
Rapid Commun Mass Spectrom (2005) 19(21): 3002-3006

Fourier Transform Ion Cyclotron Resonance Mass Spectrometry for the Analysis of Small Ubiquitin-like Modifier (SUMO) Modification: Identification of Lysines in RanBP2 and SUMO Targeted for Modification during the E3 AutoSUMOylation Reaction
Cooper HJ, Tatham MH, Jaffray E, Heath JK, Lam TT, Marshall AG, Hay RT
Anal Chem (2005) 77(19): 6310-6319

Phosphoproteome Analysis
Raggiaschi Roberto, Gotta Stefano, Terstappen Georg
Bioscience Reports (2005) 25(1-2): 33-44

Differential Multisite Phosphorylation of the Trehalose-6-phosphate Synthase Gene Family in Arabidopsis thaliana: A Mass Spectrometry-based Process for Multiparallel Peptide Library Phosphorylation Analysis
Mirko Glinski and Wolfram Weckwerth
Mol Cell Proteomics (2005) 4(10): 1614-1625

A Method of Mapping Protein Sumoylation Sites by Mass Spectrometry Using a Modified Small Ubiquitin-like Modifier 1 (SUMO-1) and a Computational Program
Matthew Knuesel, Hiu Tom Cheung, Micah Hamady, Kristen K. B. Barthel, and Xuedong Liu
Mol Cell Proteomics (2005) 4(10): 1626-1636

Methods for the Detection of Paxillin Post-translational Modifications and Interacting Proteins by Mass Spectrometry
Melanie J. Schroeder, Donna J. Webb, Jeffrey Shabanowitz, Alan F. Horwitz, and Donald F. Hunt
JOURNAL OF PROTEOME RESEARCH (2005) 4(5): 1832-1841

Redox proteomics identification of oxidatively modified proteins in Alzheimer's disease brain and in vivo and in vitro models of AD centered around Abeta(1-42)
Sultana R, Perluigi M, Butterfield DA
J Chromatogr B Analyt Technol Biomed Life Sci Early Edition: published 14-Oct-2005

Phosphoproteome Analysis of HeLa Cells Using Stable Isotope Labeling with Amino Acids in Cell Culture (SILAC)
Ramars Amanchy, Dario E. Kalume, Akiko Iwahori, Jun Zhong, and Akhilesh Pandey
JOURNAL OF PROTEOME RESEARCH (2005) 4(5): 1661-1671

Substrate specificity analysis of protein kinase complex Dbf2-Mob1 by peptide library and proteome array screening
Mah AS, Elia AE, Devgan G, Ptacek J, Schutkowski M, Snyder M, Yaffe MB, Deshaies RJ
BMC Biochem (2005) 6(1): 22

Protein-protein interaction

Towards a proteome-scale map of the human protein-protein interaction network
Rual JF, Venkatesan K, Hao T, Hirozane-Kishikawa T, Dricot A, Li N, Berriz GF, Gibbons FD, Dreze M, Ayivi-Guedehoussou N, Klitgord N, Simon C, Boxem M, Milstein S, Rosenberg J, Goldberg DS, Zhang LV, Wong SL, Franklin G, Li S, Albala JS, Lim J, Fraughton C, Llamosas E, Cevik S, Bex C, Lamesch P, Sikorski RS, Vandenhaute J, Zoghbi HY, Smolyar A, Bosak S, Sequerra R, Doucette-Stamm L, Cusick ME, Hill DE, Roth FP, Vidal M
Nature Early Edition: published 28-Sep-2005

Interaction Proteomics
Monti Maria, Orru Stefania, Pagnozzi Daniela, Pucci Piero
Bioscience Reports (2005) 25(1-2): 45-56

Methods for the Detection of Paxillin Post-translational Modifications and Interacting Proteins by Mass Spectrometry
Melanie J. Schroeder, Donna J. Webb, Jeffrey Shabanowitz, Alan F. Horwitz, and Donald F. Hunt
JOURNAL OF PROTEOME RESEARCH (2005) 4(5): 1832-1841

Detection and Identification of Protein Interactions of S100 Proteins by ProteinChip Technology
Roland Lehmann, Christian Melle, Niko Escher, and Ferdinand von Eggeling
JOURNAL OF PROTEOME RESEARCH (2005) 4(5): 1717-1721

[Back to TOP]

Quantitation

Correlation of relative abundance ratios derived from Peptide ion chromatograms and spectrum counting for quantitative proteomic analysis using stable isotope labeling
Zybailov B, Coleman MK, Florens L, Washburn MP
Anal Chem (2005) 77(19): 6218-24

Comparison of Label-free Methods for Quantifying Human Proteins by Shotgun Proteomics
William M. Old, Karen Meyer-Arendt, Lauren Aveline-Wolf, Kevin G. Pierce, Alex Mendoza, Joel R. Sevinsky, Katheryn A. Resing, and Natalie G. Ahn
Mol Cell Proteomics (2005) 4(10): 1487-1502

Method for Qualitative Comparisons of Protein Mixtures Based on Enzyme-Catalyzed Stable-Isotope Incorporation
Ekaterina Mirgorodskaya, Erich Wanker, Albrecht Otto, Hans Lehrach, and Johan Gobom
JOURNAL OF PROTEOME RESEARCH Early Edition: published 10/14/2005

Correlation of Relative Abundance Ratios Derived from Peptide Ion Chromatograms and Spectrum Counting for Quantitative Proteomic Analysis Using Stable Isotope Labeling
Boris Zybailov, Michael K. Coleman, Laurence Florens, and Michael P. Washburn
ANALYTICAL CHEMISTRY (2005) 77(19): 6218-6224

[Back to TOP]

Review

Application of Mass Spectrometry in Proteomics
Guerrera Ida, Kleiner Oliver
Bioscience Reports (2005) 25(1-2): 71-93

Proteomics in rheumatology: a new direction for old diseases
Ali M, Manolios N
Semin Arthritis Rheum (2005) 35(2): 67-76

Mass spectrometry in diagnostic oncoproteomics
Roboz J
Cancer Invest (2005) 23(5): 465-78

Interpretation of Shotgun Proteomic Data: The Protein Inference Problem
Alexey I. Nesvizhskii and Ruedi Aebersold
Mol Cell Proteomics (2005) 4(10): 1419-1440

The Roles of Multiple Proteomic Platforms in a Pipeline for New Diagnostics
N. Leigh Anderson
Mol Cell Proteomics (2005) 4(10): 1441-1444

Uncovering early markers of cardiac disease by proteomics: avoiding (heart) failure!
Anthony O Gramolini, Andrew Emili
Expert Review of Proteomics (2005) 2(5): 631-634

Online coupling of capillary electrophoresis with mass spectrometry for the identification of biomarkers for clinical diagnosis
Eva M Weissinger, Bernd Hertenstein, Harald Mischak, Arnold Ganser
Expert Review of Proteomics (2005) 2(5): 639-647

Application of immobilized metal affinity chromatography in proteomics
Xuesong Sun, Jen-Fu Chiu, Qing-Yu He
Expert Review of Proteomics (2005) 2(5): 649-657

Tissue proteomics using capillary isoelectric focusing-based multidimensional separations
Yueju Wang, Brian M Balgley, Cheng S Lee
Expert Review of Proteomics (2005) 2(5): 659-667

Multiplex proteomic approaches to sepsis research: case studies employing new technologies
Josef G Heuer, David J Cummins, Brian T Edmonds
Expert Review of Proteomics (2005) 2(5): 669-680

Proteomic analysis of colorectal cancer: discovering novel biomarkers
Anita R Skandarajah, Robert L Moritz, Joe J Tjandra, Richard J Simpson
Expert Review of Proteomics (2005) 2(5): 681-692

Cancer proteomics: many technologies, one goal
Thomas P Conrads, Brian L Hood, Emmanuel F Petricoin III, Lance A Liotta, Timothy D Veenstra
Expert Review of Proteomics (2005) 2(5): 693-703

Determination of protein-derived epitopes by mass spectrometry
Christine Hager-Braun, Kenneth B Tomer
Expert Review of Proteomics (2005) 2(5): 745-756

Systems toxicology: applications of toxicogenomics, transcriptomics, proteomics and metabolomics in toxicology
Wilbert HM Heijne, Anne S Kienhuis, Ben van Ommen, Rob H Stierum, John P Groten
Expert Review of Proteomics (2005) 2(5): 767-780

Understanding protein trafficking in plant cells through proteomics
Songqin Pan, Clay J Carter, Natasha V Raikhel
Expert Review of Proteomics (2005) 2(5): 781-792

Proteomics of plasma membrane microdomains
Francesca Raimondo, Paolo Ceppi, Katia Guidi, Massimo Masserini, Claudia Foletti, Marina Pitto
Expert Review of Proteomics (2005) 2(5): 793-807

Proteomic characterization of skin and epidermis in response to environmental agents
Chun-Ming Huang, Hui Xu, Chao-Cheng Wang, Craig A Elmets
Expert Review of Proteomics (2005) 2(5): 809-820

Micro-separation toward systems biology
Liu BF, Xu B, Zhang G, Du W, Luo Q
J Chromatogr A Early Edition: published 14-Oct-2005

[Back to TOP]

Methodology

Functional studies of protein tyrosine phosphatases with chemical approaches
Zhang ZY
Biochim Biophys Acta Early Edition: published 2005 Sep 29

Two-dimensional separation of peptides using RP-RP-HPLC system with different pH in first and second separation dimensions
Gilar M, Olivova P, Daly AE, Gebler JC
J Sep Sci (2005) 28(14): 1694-703

Orthogonality of separation in two-dimensional liquid chromatography
Gilar M, Olivova P, Daly AE, Gebler JC
Anal Chem (2005) 77(19): 6426-34

Two-dimensional gas-phase separations coupled to mass spectrometry for analysis of complex mixtures
Tang K, Li F, Shvartsburg AA, Strittmatter EF, Smith RD
Anal Chem (2005) 77(19): 6381-8

A systems biology approach to genetic studies of complex diseases
Xiong M, Feghali-Bostwick CA, Arnett FC, Zhou X
FEBS Lett Early Edition: published 21-Sep-2005

Diagonal reverse-phase chromatography applications in peptide-centric proteomics: Ahead of catalogue-omics?
Gevaert K, Damme PV, Martens L, Vandekerckhove J
Anal Biochem (2005) 345(1): 18-29

Comparing monolithic and microparticular capillary columns for the separation and analysis of peptide mixtures by liquid chromatography-mass spectrometry
Toll H, Wintringer R, Schweiger-Hufnagel U, Huber CG
J Sep Sci (2005) 28(14): 1666-74

How to Bring the "Unseen" Proteome to the Limelight via Electrophoretic Pre-Fractionation Techniques
Righetti Pier, Castagna Annalisa, Herbert Ben, Candiano Giovanni
Bioscience Reports (2005) 25(1-2): 3-17

Protein Detection Methods in Proteomics Research
Westermeier Reiner, Marouga Rita
Bioscience Reports (2005) 25(1-2): 19-32

Chemically Modified, Immobilized Trypsin Reactor with Improved Digestion Efficiency
J. Robert Freije, Patty P. M. F. A. Mulder, Wendy Werkman, Laurent Rieux, Harm A. G. Niederlander, Elisabeth Verpoorte, and Rainer Bischoff
JOURNAL OF PROTEOME RESEARCH (2005) 4(5): 1805-1813

Francisella tularensis Proteome: Low Levels of ASB-14 Facilitate the Visualization of Membrane Proteins in Total Protein Extracts
Susan M. Twine, Nadia C. S. Mykytczuk, Mireille Petit, Tammy-Lynn Tremblay, J. Wayne Conlan, and John F. Kelly
JOURNAL OF PROTEOME RESEARCH (2005) 4(5): 1848-1854

Optimizing Thiophosphorylation in the Presence of Competing Phosphorylation with MALDI-TOF-MS Detection
Laurie L. Parker, Alexander B. Schilling, Stephen J. Kron, and Stephen B. H. Kent
JOURNAL OF PROTEOME RESEARCH (2005) 4(5): 1863-1866

Peptidyl-Lys Metalloendopeptidase-catalyzed 18O Labeling for Comparative Proteomics: Application to Cytokine/Lipolysaccharide-treated Human Retinal Pigment Epithelium Cell Line
K. C. Sekhar Rao, Vikram Palamalai, Jane R. Dunlevy, and Masaru Miyagi
Mol Cell Proteomics (2005) 4(10): 1550-1557

A Method for the Rapid and Efficient Elution of Native Affinity-Purified Protein A Tagged Complexes
Caterina Strambio-de-Castillia, Jaclyn Tetenbaum-Novatt, Brian S. Imai, Brian T. Chait, and Michael P. Rout
JOURNAL OF PROTEOME RESEARCH Early Edition: published 10/14/2005

Serial Isoelectric Focusing as an Effective and Economic Way to Obtain Maximal Resolution and High-Throughput in 2D-Based Comparative Proteomics of Scarce Samples: Proof-of-Principle
Murtada H. Farhoud^,, Hans J. C. T. Wessels, Ron A. Wevers, Baziel G. van Engelen, Lambert P. van den Heuvel, and Jan A. Smeitink
JOURNAL OF PROTEOME RESEARCH Early Edition: published 10/14/2005

Exploring the Hidden Human Urinary Proteome via Ligand Library Beads
Annalisa Castagna, Daniela Cecconi, Lau Sennels, Juri Rappsilber, Luc Guerrier, Frederic Fortis, Egisto Boschetti, Lee Lomas, and Pier Giorgio Righetti
JOURNAL OF PROTEOME RESEARCH Early Edition: published 10/14/2005

One-Pot Glyco-Affinity Precipitation Purification for Enhanced Proteomics: The Flexible Alignment of Solution-Phase Capture/Release and Solid-Phase Separation
Xue-Long Sun, Carolyn A. Haller , XiaoYi Wu , Vincent P. Conticello, and Elliot L. Chaikof
JOURNAL OF PROTEOME RESEARCH Early Edition: published 10/14/2005

Online coupling of capillary electrophoresis with mass spectrometry for the identification of biomarkers for clinical diagnosis
Eva M Weissinger, Bernd Hertenstein, Harald Mischak, Arnold Ganser
Expert Review of Proteomics (2005) 2(5): 639-647

Application of immobilized metal affinity chromatography in proteomics
Xuesong Sun, Jen-Fu Chiu, Qing-Yu He
Expert Review of Proteomics (2005) 2(5): 649-657

Tissue proteomics using capillary isoelectric focusing-based multidimensional separations
Yueju Wang, Brian M Balgley, Cheng S Lee
Expert Review of Proteomics (2005) 2(5): 659-667

Multiplex proteomic approaches to sepsis research: case studies employing new technologies
Josef G Heuer, David J Cummins, Brian T Edmonds
Expert Review of Proteomics (2005) 2(5): 669-680

Microfluidic Platform for Liquid Chromatography-Tandem Mass Spectrometry Analyses of Complex Peptide Mixtures
Jun Xie, Yunan Miao, Jason Shih, Yu-Chong Tai, and Terry D. Lee
ANALYTICAL CHEMISTRY (2005) 77(21): 6947-6953

Proteome Analysis of Microdissected Tumor Tissue Using a Capillary Isoelectric Focusing-Based Multidimensional Separation Platform Coupled with ESI-Tandem MS
Yueju Wang, Paul A. Rudnick, Erin L. Evans, Jie Li, Zhengping Zhuang, Don L. DeVoe, Cheng S. Lee, and Brian M. Balgley
ANALYTICAL CHEMISTRY (2005) 77(20): 6549-6556

Automated PreScan Function for Scanning Fluorescently Stained 2D-PAGE Gels
Peter Bäck, Sofia Bengtsson, and Peter James
JOURNAL OF PROTEOME RESEARCH (2005) 4(5): 1511-1515

Reversed-Phase High-Performance Liquid Chromatographic Prefractionation of Immunodepleted Human Serum Proteins to Enhance Mass Spectrometry Identification of Lower-Abundant Proteins
James Martosella, Nina Zolotarjova, Hongbin Liu, Gordon Nicol, and Barry E. Boyes
JOURNAL OF PROTEOME RESEARCH (2005) 4(5): 1522-1537

Data-Dependent Electron Capture Dissociation FT-ICR Mass Spectrometry for Proteomic Analyses
Helen J. Cooper, Shiva Akbarzadeh, John K. Heath, and Martin Zeller
JOURNAL OF PROTEOME RESEARCH (2005) 4(5): 1538-1544

Enrichment of Phosphoproteins for Proteomic Analysis Using Immobilized Fe(III)-Affinity Adsorption Chromatography
Ida Chiara Guerrera, Jelena Predic-Atkinson, Oliver Kleiner, Vukic Soskic, and Jasminka Godovac-Zimmermann
JOURNAL OF PROTEOME RESEARCH (2005) 4(5): 1545-1553

Direct Identification of Ubiquitination Sites on Ubiquitin-Conjugated CHIP Using MALDI Mass Spectrometry
Dongxia Wang, Wanping Xu, Sara C. McGrath, Cam Patterson, Len Neckers, and Robert J. Cotter
JOURNAL OF PROTEOME RESEARCH (2005) 4(5): 1554-1560

Ultra Fast Trypsin Digestion of Proteins by High Intensity Focused Ultrasound
D. López-Ferrer, J. L. Capelo, and J. Vázquez
JOURNAL OF PROTEOME RESEARCH (2005) 4(5): 1569-1574

Uncovering the Unfoldome: Enriching Cell Extracts for Unstructured Proteins by Acid Treatment
Marc S. Cortese, Jason P. Baird, Vladimir N. Uversky, and A. Keith Dunker
JOURNAL OF PROTEOME RESEARCH (2005) 4(5): 1610-1618

Phosphatase-Directed Phosphorylation-Site Determination: A Synthesis of Methods for the Detection and Identification of Phosphopeptides
Matthew P. Torres, Roopa Thapar, William F. Marzluff, and Christoph H. Borchers
JOURNAL OF PROTEOME RESEARCH (2005) 4(5): 1628-1635

Characterization of Toxins within Crude Venoms by Combined Use of Fourier Transform Mass Spectrometry and Cloning
Loïc Quinton, Jean-Pierre Le Caer, Gilles Phan, Caroline Ligny-Lemaire, Julie Bourdais- Jomaron, Frédéric Ducancel, and Julia Chamot-Rooke
ANALYTICAL CHEMISTRY (2005) 77(20): 6630-6639

Ultrahigh-Throughput Proteomics Using Fast RPLC Separations with ESI-MS/MS
Yufeng Shen and Richard D. Smith Klaus K. Unger and Dipika Kumar Dieter Lubda
ANALYTICAL CHEMISTRY (2005) 77(20): 6692-6701

Sample-Dependent Effects on the Neuropeptidome Detected in Rat Brain Tissue Preparations by Capillary Liquid Chromatography with Tandem Mass Spectrometry
Mark C. Parkin, Hui Wei, James P. O'Callaghan, and Robert T. Kennedy
ANALYTICAL CHEMISTRY (2005) 77(19): 6331-6338

Pyridinium-based ionic liquid matrices can improve the identification of proteins by peptide mass-fingerprint analysis with matrix-assisted laser desorption/ionization mass spectrometry
Zabet-Moghaddam M, Heinzle E, Lasaosa M, Tholey A
Anal Bioanal Chem Early Edition: published 27-Oct-2005

LC-MS solvent composition monitoring and chromatography alignment using mobile phase tracer molecules
Chen SS, Aebersold R
J Chromatogr B Analyt Technol Biomed Life Sci Early Edition: published 17-Oct-2005

Biosensor-Based Micro-Affinity Purification for the Proteomic Analysis of Protein Complexes
B. Catimel, J. Rothacker, J. Catimel, M. Faux, J. Ross, L. Connolly, A. Clippingdale, A. W. Burgess, and E. Nice
JOURNAL OF PROTEOME RESEARCH (2005) 4(5): 1646-1656

Simple and Robust Two-Layer Matrix/Sample Preparation Method for MALDI MS/MS Analysis of Peptides
Jing Zheng, Nan Li, Marc Ridyard, Hui Dai, Stephen M. Robbins, and Liang Li
JOURNAL OF PROTEOME RESEARCH (2005) 4(5): 1709-1716

Effect of Immunoaffinity Depletion of Human Serum during Proteomic Investigations
Anastasia K. Yocum, Kenneth Yu, Tomoyuki Oe, and Ian A Blair
JOURNAL OF PROTEOME RESEARCH (2005) 4(5): 1722-1731

[Back to TOP]

Books

Protein-Protein Interactions: Methods and Applications
C. A. Stanyon
JOURNAL OF PROTEOME RESEARCH (2005) 4(5): 1484

[Back to TOP]

Other

Impact of Replicate Types on Proteomic Expression Analysis
Natasha A. Karp, Matthew Spencer, Helen Lindsay, Kevin O'Dell, and Kathryn S. Lilley
JOURNAL OF PROTEOME RESEARCH (2005) 4(5): 1867-1871

The impact of computing technology on pharmaceutical and biotech research
Owen J
IDrugs (2005) 8(10): 834-7

The Paris Consensus
Ronald Beavis
JOURNAL OF PROTEOME RESEARCH (2005) 4(5): 1475

Mouse serum proteomics
Katie Cottingham
JOURNAL OF PROTEOME RESEARCH (2005) 4(5): 1481

HUPO Plasma Proteome Project's first fruits
Katie Cottingham
JOURNAL OF PROTEOME RESEARCH (2005) 4(5): 1482

Metabolomics reporting standards proposed
Vida Foubister
JOURNAL OF PROTEOME RESEARCH (2005) 4(5): 1483

Modeling Biological Variability in 2-D Gel Proteomic Carcinogenesis Experiments
Craig Rowell, Mark Carpenter, and Coral A. Lamartiniere
JOURNAL OF PROTEOME RESEARCH (2005) 4(5): 1619-1627

Comparison of Probability and Likelihood Models for Peptide Identification from Tandem Mass Spectrometry Data
William R. Cannon, Kristin H. Jarman, Bobbie-Jo M. Webb-Robertson, Douglas J. Baxter, Christopher S. Oehmen, Kenneth D. Jarman, Alejandro Heredia-Langner, Kenneth J. Auberry, and Gordon A. Anderson
JOURNAL OF PROTEOME RESEARCH (2005) 4(5): 1687-1698

[Home]
[About the Society] [Statutes] [Membership] [Committee]
[Career & Employment] [Links]
[News & Events] [SPS' Digest] [Jokeomics]
[Support & Award]