SPS' Digest

Issue 28, 9-Mar-2006

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Quick jumps to articles in: Bioinformatics (24) / Biological applications (42) / Biomedical and clinical applications (38) / Eukaryotic Cells And Tissues (24) / Prokaryotes (15) / Pharmacology and Toxicology (9) / Protein Array (9) / Protein Characterization - PTMs (8) / Protein-protein interaction (6) / Quantitation (11) / Review (25) / Methodology (45) / Books (1) / Meeting (2) / Other (10) /

In this issue, 257 articles have been selected from:

Am J Physiol Endocrinol Metab, Early Edition, 31-Jan-2006 (1 article)
Am J Physiol Gastrointest Liver Physiol, Early Edition, 26-Jan-2006 (1 article)
Anal Bioanal Chem, Early Edition, 15-Feb-2006 (1 article)
Anal Chem, Volume 78, Issues 1+2+3+4, 2006 (13 articles)
Analyst, Volume 131, Issue 2, 2006 (1 article)
Analytical Biochemistry, Volume 346, Issue 2, 2005 (1 article)
Ann Hematol, Early Edition, 7-Feb-2006 (1 article)
Ann N Y Acad Sci, Volume 1061, 2005 (1 article)
Ann N Y Acad Sci, Volume 1062, 2005 (1 article)
Ann N Y Acad Sci, Volume 1063, 2005 (4 articles)
Ann Neurol, Volume 59, Issue 2, 2006 (1 article)
Appl Environ Microbiol, Volume 72, Issue 2, 2006 (1 article)
BMC Bioinformatics, Volume 7, Issue 1, 2006 (1 article)
Biochem Biophys Res Commun, Early Edition, 2-Feb-2006 (1 article)
Biochem Biophys Res Commun, Volume 342, Issue 1, 2006 (1 article)
Biochem J, Early Edition, 16-Feb-2006 (1 article)
Biochemistry, Volume 45, Issues 7+8, 2006 (2 articles)
Bioinformatics, Early Edition, 20-Jan-2006->24-Jan-2006 (2 articles)
Bioinformatics, Volume 22, Issues 3+4+5, 2006 (7 articles)
Biosens Bioelectron, Early Edition, 31-Jan-2006 (1 article)
Blood Cells Mol Dis, Early Edition, 15-Feb-2006 (1 article)
Br J Ophthalmol, Volume 90, Issue 3, 2006 (1 article)
Cancer Res, Volume 66, Issue 3, 2006 (2 articles)
Cell Biochem Biophys, Volume 44, Issue 1, 2006 (1 article)
Circ Res, Volume 98, Issue 3, 2006 (1 article)
Clin Cancer Res, Volume 12, Issue 3, 2006 (1 article)
Clin Chem, Early Edition, 23-Feb-2006 (1 article)
Clin J Oncol Nurs, Volume 10, Issue 1, 2006 (1 article)
Comb Chem High Throughput Screen, Volume 8, Issue 8, 2005 (9 articles)
Curr Drug Discov Technol, Volume 1, Issues 1+3, 2004 (2 articles)
Dis Aquat Organ, Volume 68, Issue 1, 2005 (1 article)
Electrophoresis, Early Edition, 7-Feb-2006 (4 articles)
Environ Health Perspect, Volume 114, Issue 2, 2006 (1 article)
Environ Microbiol, Volume 8, Issue 3, 2006 (1 article)
Expert Rev Proteomics, Volume 3, Issue 1, 2006 (15 articles)
Expert Rev Vaccines, Volume 5, Issue 1, 2006 (1 article)
FEBS Lett, Early Edition, 23-Jan-2006 (1 article)
Free Radic Biol Med, Volume 40, Issue 3, 2006 (1 article)
Genomics Proteomics Bioinformatics, Volume 3, Issue 3, 2005 (1 article)
Head Neck, Early Edition, 10-Feb-2006 (1 article)
Health Aff (Millwood), Early Edition, 14-Feb-2006 (1 article)
Hum Mol Genet, Early Edition, 15-Feb-2006 (1 article)
Infect Immun, Volume 74, Issue 3, 2006 (1 article)
Int J Fertil Womens Med, Volume 50, Issue 5 Pt 1, 2005 (1 article)
Int J Food Microbiol, Early Edition, 10-Feb-2006 (1 article)
J Am Chem Soc, Volume 128, Issue 7, 2006 (1 article)
J Am Soc Mass Spectrom, Early Edition, 15-Feb-2006 (1 article)
J Biochem Biophys Methods, Early Edition, 27-Dec-2005 (1 article)
J Biotechnol, Early Edition, 24-Jan-2006 (1 article)
J Chem Inf Model, Volume 46, Issue 1, 2006 (3 articles)
J Chromatogr A, Early Edition, 1-Feb-2006->31-Jan-2006 (2 articles)
J Chromatogr B, Early Edition, 14-Feb-2006->30-Jan-2006 (4 articles)
J Exp Bot, Early Edition, 31-Jan-2006 (1 article)
J Physiol Biochem, Volume 61, Issue 3, 2005 (1 article)
J Proteome Res, Early Edition, 02/03/2006->03/03/2006 (28 articles)
J Proteome Res, Volume 5, Issue 2, 2006 (31 articles)
J Virol, Volume 80, Issue 5, 2006 (2 articles)
Journal of the American Society for Mass Spectrometry, Volume 16, Issue 12, 2005 (3 articles)
Laryngoscope, Volume 116, Issue 2, 2006 (1 article)
Lett Appl Microbiol, Volume 42, Issue 3, 2006 (1 article)
Mass Spectrom Rev, Early Edition, 3-Feb-2006->23-Feb-2006 (3 articles)
Mech Ageing Dev, Early Edition, 20-Jan-2006 (1 article)
Methods Mol Med, Volume 120, 2006 (1 article)
Microbiol Immunol, Volume 50, Issue 2, 2006 (1 article)
Microbiology, Volume 152, Issue Pt 2, 2006 (1 article)
Mini Rev Med Chem, Volume 6, Issue 2, 2006 (1 article)
Mol Cell Proteomics, Volume 5, Issue 2, 2006 (18 articles)
Mol Psychiatry, Early Edition, 21-Feb-2006 (1 article)
Nat Rev Cancer, Volume 6, Issue 2, 2006 (1 article)
Nat Rev Mol Cell Biol, Early Edition, 15-Feb-2006 (1 article)
NeuroRx, Volume 2, Issue 4, 2005 (1 article)
Neurobiol Dis, Early Edition, 6-Feb-2006 (1 article)
Neurology, Early Edition, 15-Feb-2006 (1 article)
Parasitology, Volume 128, Issue S1, 2004 (1 article)
Pediatr Res, Volume 59, Issue 3, 2006 (1 article)
Physiol Genomics, Early Edition, 31-Jan-2006 (1 article)
Plant Physiol, Early Edition, 3-Feb-2006 (2 articles)
Planta, Early Edition, 22-Feb-2006 (1 article)
Prep Biochem Biotechnol, Volume 36, Issue 1, 2006 (3 articles)
Proc Natl Acad Sci U S A, Early Edition, 7 March 2006->15-Feb-2006 (2 articles)
Proteomics, Volume 6, Issue 5, 2006 (31 articles)
Rapid Commun Mass Spectrom, Volume 20, Issues 5+6, 2006 (2 articles)
Regul Toxicol Pharmacol, Early Edition, 24-Jan-2006 (1 article)
Sci China C Life Sci, Volume 48, Issue 6, 2005 (1 article)
Toxicol In Vitro, Early Edition, 7-Feb-2006 (1 article)
Trends in Biotechnology, Volume 23, Issue 12, 2005 (1 article)
Tumori, Volume 91, Issue 6, 2005 (1 article)

Disclaimer: The selection and categorisation reflect the views and understandings of contributors (i.e. SPS members).

Quick jumps to articles in: Bioinformatics (24) / Biological applications (42) / Biomedical and clinical applications (38) / Eukaryotic Cells And Tissues (24) / Prokaryotes (15) / Pharmacology and Toxicology (9) / Protein Array (9) / Protein Characterization - PTMs (8) / Protein-protein interaction (6) / Quantitation (11) / Review (25) / Methodology (45) / Books (1) / Meeting (2) / Other (10) /

Bioinformatics

MassSorter: a tool for administrating and analyzing data from mass spectrometry experiments on proteins with known amino acid sequence
Barsnes H, Mikalsen SO, Eidhammer I
BMC Bioinformatics (2006) 7(1): 42

ProteomeCommons.org JAF: reference information and tools for proteomics
Falkner JA, Falkner JW, Andrews PC
Bioinformatics Early Edition: published 24-Jan-2006

MultiLoc: prediction of protein subcellular localization using N-terminal targeting sequences, sequence motifs, and amino acid composition
Hoglund A, Donnes P, Blum T, Adolph HW, Kohlbacher O
Bioinformatics Early Edition: published 20-Jan-2006

Proteomic Maps-Toxicity Relationship of Halocarbons Studied with Similarity Index and Genetic Algorithm
Vracko M, Basak SC, Geiss K, Witzmann F
J Chem Inf Model (2006) 46(1): 130-136

On the Dependence of a Characterization of Proteomics Maps on the Number of Protein Spots Considered
Randic M, Witzmann FA, Kodali V, Basak SC
J Chem Inf Model (2006) 46(1): 116-122

MZmine: toolbox for processing and visualization of mass spectrometry based molecular profile data
Mikko Katajamaa, Jarkko Miettinen, and Matej Oresic
Bioinformatics (2006) 22(5): 634-636

PepHMM: a hidden Markov model based scoring function for mass spectrometry database search
Wan Y, Yang A, Chen T
Anal Chem (2006) 78(2): 432-7

An extensible automated protein annotation tool: standardizing input and output using validated XML
S. Vishnu V. Deevi and Andrew C. R. Martin
Bioinformatics (2006) 22(3): 291-296

Enhanced recognition of protein transmembrane domains with prediction-based structural profiles
Baoqiang Cao, Aleksey Porollo, Rafal Adamczak, Mark Jarrell, and Jaroslaw Meller
Bioinformatics (2006) 22(3): 303-309

SubLoc: a server/client suite for protein subcellular location based on SOAP
Hu Chen, Ni Huang, and Zhirong Sun
Bioinformatics (2006) 22(3): 376-377

Quality classification of tandem mass spectrometry data
Jussi Salmi, Robert Moulder, Jan-Jonas Filen, Olli S. Nevalainen, Tuula A. Nyman, Riitta Lahesmaa, and Tero Aittokallio
Bioinformatics (2006) 22(4): 400-406

XCMS: processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, matching, and identification
Smith CA, Want EJ, O'Maille G, Abagyan R, Siuzdak G
Anal Chem (2006) 78(3): 779-87

MiGenes: a searchable interspecies database of mitochondrial proteins curated using gene ontology annotation
Siddhartha Basu, Erich Bremer, Chun Zhou, and Daniel F. Bogenhagen
Bioinformatics (2006) 22(4): 485-492

Comparison of Software Tools to Improve the Detection of Carcinogen Induced Changes in the Rat Liver Proteome by Analyzing SELDI-TOF-MS Spectra
Suse Beyer, Yvonne Walter, Juergen Hellmann, Peter-Juergen Kramer, Annette Kopp-Schneider, Michaela Kroeger, and Carina Ittrich
JOURNAL OF PROTEOME RESEARCH (2006) 5(2): 254-261

Decoding 2D-PAGE complex maps: Relevance to proteomics
Pietrogrande MC, Marchetti N, Dondi F, Righetti PG
J Chromatogr B Analyt Technol Biomed Life Sci Early Edition: published 28-Jan-2006

Datamining Methodology for LC-MALDI-MS Based Peptide Profiling
Zucht HD, Lamerz J, Khamenia V, Schiller C, Appel A, Tammen H, Crameri R, Selle H
Comb Chem High Throughput Screen (2005) 8(8): 717-23

Processing and classification of protein mass spectra
Hilario M, Kalousis A, Pellegrini C, Muller M
Mass Spectrom Rev Early Edition: published 3-Feb-2006

Database of two-dimensional polyacrylamide gel electrophoresis of proteins labeled with CyDye DIGE Fluor saturation dye
Kazuyasu Fujii, Tadashi Kondo, Hideki Yokoo, Tetsuya Okano, Masayo Yamada, Tesshi Yamada, Keiji Iwatsuki, Setsuo Hirohashi
PROTEOMICS (2006) 6(5): 1640-1653

Improving Sensitivity in Shotgun Proteomics Using a Peptide-Centric Database with Reduced Complexity: Protease Cleavage and SCX Elution Rules from Data Mining of MS/MS Spectra
Yen CY, Russell S, Mendoza AM, Meyer-Arendt K, Sun S, Cios KJ, Ahn NG, Resing KA
Anal Chem (2006) 78(4): 1071-1084

Bioinformatics challenges in proteomics
Englbrecht CC, Facius A
Comb Chem High Throughput Screen (2005) 8(8): 705-15

InSilicoSpectro: An Open-Source Proteomics Library
Jacques Colinge, # Alexandre Masselot, # Pablo Carbonell, and Ron D. Appel
JOURNAL OF PROTEOME RESEARCH Early Edition: published 02/10/2006

The Proteomics Identifications Database (PRIDE) and the ProteomExchange Consortium: making proteomics data accessible
Henning Hermjakob, Rolf Apweiler
Expert Review of Proteomics (2006) 3(1): 1-3

PhosTShunter: A Fast and Reliable Tool to Detect Phosphorylated Peptides in Liquid Chromatography Fourier Transform Tandem Mass Spectrometry Data Sets
Thomas Köcher, Mikhail M. Savitski, Michael L. Nielsen, and Roman A. Zubarev
JOURNAL OF PROTEOME RESEARCH Early Edition: published 02/17/2006

Effects of post-electrophoretic analysis on variance in gel-based proteomics
Asa M Wheelock, Susumu Goto
Expert Review of Proteomics (2006) 3(1): 129-142

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Biological applications

Effect of ionizing radiation on rat tissue: proteomic and biochemical analysis
Park EC, Yoon JB, Seong JS, Choi KS, Kong ES, Kim YJ, Park YM, Park EM
Prep Biochem Biotechnol (2006) 36(1): 19-35

Identification of the Major Site of O-Linked {beta}-N-Acetylglucosamine Modification in the C Terminus of Insulin Receptor Substrate-1
Lauren E. Ball, Mary N. Berkaw, and Maria G. Buse
Mol Cell Proteomics (2006) 5(2): 313-323

Gene-Specific Characterization of Human Histone H2B by Electron Capture Dissociation
Nertila Siuti, Michael J. Roth, Craig A. Mizzen, Neil L. Kelleher, and James J. Pesavento
JOURNAL OF PROTEOME RESEARCH (2006) 5(2): 233-239

Mass Spectrometric Characterization of Human Histone H3: A Bird's Eye View
C. Eric Thomas, Neil L. Kelleher, and Craig A. Mizzen
JOURNAL OF PROTEOME RESEARCH (2006) 5(2): 240-247

Precise Characterization of Human Histones in the H2A Gene Family by Top Down Mass Spectrometry
Michael T. Boyne II, James J. Pesavento, Craig A. Mizzen, and Neil L. Kelleher
JOURNAL OF PROTEOME RESEARCH (2006) 5(2): 248-253

Decreased Striatal Levels of PEP-19 Following MPTP Lesion in the Mouse
Karl Sköld, Marcus Svensson, Anna Nilsson, Xiaoqun Zhang, Katarina Nydahl, Richard M. Caprioli, Per Svenningsson and Per E. Andrén
JOURNAL OF PROTEOME RESEARCH (2006) 5(2): 262-269

Proteomic Profiling of Regionalized Proteins in Rat Epididymis Indicates Consistency between Specialized Distribution and Protein Functions
Haixin Yuan, Li Zhang, Aihua Liu, Hu Zhou, Yiguo Wang, Hong Zhang, Guoquan Wang, Rong Zeng, Yonglian Zhang, and Zhengjun Chen
JOURNAL OF PROTEOME RESEARCH (2006) 5(2): 299-307

Saccharomyces cerevisiae Mitoproteome Plasticity in Response to Recombinant Alternative Ubiquinol Oxidase
Grégory Mathy, Rachel Navet, Pascal Gerkens, Pierre Leprince, Edwin De Pauw, Claudine M. Sluse-Goffart, Francis E. Sluse, and Pierre Douette
JOURNAL OF PROTEOME RESEARCH (2006) 5(2): 339-348

Characterization of the Mouse Brain Proteome Using Global Proteomic Analysis Complemented with Cysteinyl-Peptide Enrichment
Haixing Wang, Wei-Jun Qian, Mark H. Chin, Vladislav A. Petyuk, Richard C. Barry, Tao Liu, Marina A. Gritsenko, Heather M. Mottaz, Ronald J. Moore, David G. Camp II, Arshad H. Khan, Desmond J. Smith, and Richard D. Smith
JOURNAL OF PROTEOME RESEARCH (2006) 5(2): 361-369

A proteomic approach to analysing responses of Arabidopsis thaliana callus cells to clinostat rotation
Wang H, Zheng HQ, Sha W, Zeng R, Xia QC
J Exp Bot Early Edition: published 31-Jan-2006

Metabolic Phenotyping of Nude and Normal (Alpk:ApfCD, C57BL10J) Mice
Claire L. Gavaghan McKee, Ian D. Wilson, and Jeremy K. Nicholson
JOURNAL OF PROTEOME RESEARCH (2006) 5(2): 378-384

Proteomic Profiling for Cellular Responses to Different Concentrations of N-Methyl-N'-nitro-N-nitrosoguanidine
Jing Shen, Meiping Wu, and Yingnian Yu
JOURNAL OF PROTEOME RESEARCH (2006) 5(2): 385-395

Proteomic Analysis of Rice Leaf Sheath during Drought Stress
Ghulam Muhammad Ali and Setsuko Komatsu
JOURNAL OF PROTEOME RESEARCH (2006) 5(2): 396-403

Proteomic analysis of the tetraspanin web using LC-ESI-MS/MS and MALDI-FTICR-MS
Magali Andr�, Jean-Pierre Le Caer, C�line Greco, S�bastien Planchon, Wassim El Nemer, Claude Boucheix, Eric Rubinstein, Julia Chamot-Rooke, Fran�ois Le Naour
PROTEOMICS (2006) 6(5): 1437-1449

Lipid particle composition of the yeast Yarrowia lipolytica depends on the carbon source
Karin Athenstaedt, Pascale Jolivet, C�line Boulard, Michel Zivy, Luc Negroni, Jean-Marc Nicaud, Thierry Chardot
PROTEOMICS (2006) 6(5): 1450-1459

Proteomic and SAGE profiling of murine melanoma progression indicates the reduction of proteins responsible for ROS degradation
Gustavo A. de Souza, Lyris M. F. Godoy, Veronica R. Teixeira, Andreia H. Otake, Ad�o Sabino, Jos� C. Rosa, Anemari R. Dinarte, Daniel G. Pinheiro, Wilson A. Silva Jr., Marcos N. Eberlin, Roger Chammas, Lewis J. Greene
PROTEOMICS (2006) 6(5): 1460-1470

The tegument surface membranes of the human blood parasite Schistosoma mansoni: A proteomic analysis after differential extraction
Simon Braschi, Rachel S. Curwen, Peter D. Ashton, Sergio Verjovski-Almeida, Alan Wilson
PROTEOMICS (2006) 6(5): 1471-1482

Proteomic analysis of heterotrophy in Synechocystis sp. PCC 6803
Dominic Kurian, Tove Jans�n, Pirkko M�enp��
PROTEOMICS (2006) 6(5): 1483-1494

Proteomic analysis of altered protein expression in skeletal muscle of rats in a hypermetabolic state induced by burn sepsis
Duan X, Berthiaume F, Yarmush DM, Yarmush ML
Biochem J Early Edition: published 16-Feb-2006

A complete ferredoxin/thioredoxin system regulates fundamental processes in amyloplasts
Balmer Y, Vensel WH, Cai N, Manieri W, Schurmann P, Hurkman WJ, Buchanan BB
Proc Natl Acad Sci U S A Early Edition: published 15-Feb-2006

Proteomic characterization of lipid rafts markers from the rat intestinal brush border
Nguyen HT, Amine AB, Lafitte D, Waheed AA, Nicoletti C, Villard C, Letisse M, Deyris V, Roziere M, Tchiakpe L, Danielle CD, Comeau L, Hiol A
Biochem Biophys Res Commun (2006) 342(1): 236-244

Proteomics analysis of the tombusvirus replicase: hsp70 molecular chaperone is associated with the replicase and enhances viral RNA replication
Serva S, Nagy PD
J Virol (2006) 80(5): 2162-9

Vaccinia Virus Proteome: Identification of Proteins in Vaccinia Virus Intracellular Mature Virion Particles
Chung CS, Chen CH, Ho MY, Huang CY, Liao CL, Chang W
J Virol (2006) 80(5): 2127-2140

Changes in protein synthesis during thermal adaptation of Propionibacterium freudenreichii subsp. shermanii
Anastasiou R, Leverrier P, Krestas I, Rouault A, Kalantzopoulos G, Boyaval P, Tsakalidou E, Jan G
Int J Food Microbiol Early Edition: published 10-Feb-2006

Proteomic analysis of rat plasma by two-dimensional liquid chromatography and matrix-assisted laser desorption ionization time-of-flight mass spectrometry
Linke T, Ross AC, Harrison EH
J Chromatogr A Early Edition: published 31-Jan-2006

Coordinated and reversible reduction of enzymes involved in terminal oxidative metabolism in skeletal muscle mitochondria from a riboflavin-responsive, multiple acyl-CoA dehydrogenase deficiency patient
Gianazza E, Vergani L, Wait R, Brizio C, Brambilla D, Begum S, Giancaspero TA, Conserva F, Eberini I, Bufano D, Angelini C, Pegoraro E, Tramontano A, Barile M
Electrophoresis Early Edition: published 7-Feb-2006

Proteome analysis of signaling cascades in human platelets
Garcia A
Blood Cells Mol Dis Early Edition: published 15-Feb-2006

Proteomic Analysis of Human Immunodeficiency Virus Using Liquid Chromatography/Tandem Mass Spectrometry Effectively Distinguishes Specific Incorporated Host Proteins
Andrew C. S. Saphire, Philippe A. Gallay, and Steven J. Bark
JOURNAL OF PROTEOME RESEARCH Early Edition: published 02/17/2006

Epithelial Proteomics in Multiple Organs and Tissues: Similarities and Variations between Cells, Organs, and Diseases
Hong Zhao, Kenneth B. Adler, Chunxue Bai, Fadi Tang, and Xiangdong Wang
JOURNAL OF PROTEOME RESEARCH Early Edition: published 02/24/2006

Novel Prefractionation Method Can Be Used in Proteomic Analysis
Haixin Bai, Fan Yang, and Xiurong Yang
JOURNAL OF PROTEOME RESEARCH Early Edition: published 02/24/2006

Top-Down Proteomic Analysis of the Soluble Sub-Proteome of the Obligate Thermophile, Geobacillus thermoleovorans T80: Insights into Its Cellular Processes
Robert Leslie James Graham, Catherine E. Pollock, Nigel G. Ternan, and Geoff McMullan
JOURNAL OF PROTEOME RESEARCH Early Edition: published 02/24/2006

Proteomic Studies of the Singapore Grouper Iridovirus
Wenjun Song, Qingsong Lin, Shashikant B. Joshi, Teck Kwang Lim, and Choy-Leong Hew
Mol Cell Proteomics (2006) 5(2): 256-264

Low Temperature Treatment at the Young Microspore Stage Induces Protein Changes in Rice Anthers
Nijat Imin, Tursun Kerim, Jeremy J. Weinman, and Barry G. Rolfe
Mol Cell Proteomics (2006) 5(2): 274-292

Organellar Proteomics: Analysis of Pancreatic Zymogen Granule Membranes
Xuequn Chen, Angela K. Walker, John R. Strahler, Eric S. Simon, Sarah L. Tomanicek-Volk, Bradley B. Nelson, Mary C. Hurley, Stephen A. Ernst, John A. Williams, and Philip C. Andrews
Mol Cell Proteomics (2006) 5(2): 306-312

Molecular Diversity in Venom from the Australian Brown Snake, Pseudonaja textilis
Geoff W. Birrell, Stephen Earl, Paul P. Masci, John de Jersey, TristanP. Wallis, Jeffrey J. Gorman, and Martin F. Lavin
Mol Cell Proteomics (2006) 5(2): 379-389

Delineating signal transduction pathways in smooth muscle through focused proteomics
Laura Hagerty, Timothy AJ Haystead
Expert Review of Proteomics (2006) 3(1): 75-85

Protein turnover on the scale of the proteome
Mary K Doherty, Robert J Beynon
Expert Review of Proteomics (2006) 3(1): 97-110

Highbrow proteasome in high-throughput technology
Maria Gaczynska, Karl Rodriguez, Srividya Madabhushi, Pawel A Osmulski
Expert Review of Proteomics (2006) 3(1): 115-127

Reconstruction of central carbon metabolism in Sulfolobus solfataricus using a two-dimensional gel electrophoresis map, stable isotope labelling and DNA microarray analysis
Ambrosius P. L. Snijders, Jasper Walther, Stefan Peter, Iris Kinnman, Marjon G. J. de Vos, Harmen J. G. van de Werken, Stan J. J. Brouns, John van der Oost, Phillip C. Wright
PROTEOMICS (2006) 6(5): 1518-1529

Proteases and chaperones are the most abundant proteins in the parasitophorous vacuole of Plasmodium falciparum-infected erythrocytes
Julius Nyalwidhe, Klaus Lingelbach
PROTEOMICS (2006) 6(5): 1563-1573

Down-regulation of the strawberry Bet v 1-homologous allergen in concert with the flavonoid biosynthesis pathway in colorless strawberry mutant
Karin Hjern�, Rikard Alm, Bj�rn Canb�ck, Rune Matthiesen, Karin Trajkovski, Lars Bj�rk, Peter Roepstorff, Cecilia Emanuelsson
PROTEOMICS (2006) 6(5): 1574-1587

The cassava (Manihot esculenta Crantz) root proteome: Protein identification and differential expression
Jeanne Sheffield, Nigel Taylor, Claude Fauquet, Sixue Chen
PROTEOMICS (2006) 6(5): 1588-1598

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Biomedical and clinical applications

Differential expression proteomics of human colon cancer
Mazzanti R, Solazzo M, Fantappie O, Elfering S, Pantaleo P, Bechi P, Cianchi F, Ettl A, Giulivi C
Am J Physiol Gastrointest Liver Physiol Early Edition: published 26-Jan-2006

Cleavage of cystatin C in the cerebrospinal fluid of patients with multiple sclerosis
Irani DN, Anderson C, Gundry R, Cotter R, Moore S, Kerr DA, McArthur JC, Sacktor N, Pardo CA, Jones M, Calabresi PA, Nath A
Ann Neurol (2006) 59(2): 237-247

The challenge of analyzing the proteome in humans with autoimmune diseases
Chan SM, Utz PJ
Ann N Y Acad Sci (2005) 1062: 61-8.

Proteomic strategies and their application in cancer research
Alessandro R, Fontana S, Kohn E, De Leo G
Tumori (2005) 91(6): 447-55

Elucidation of N-Glycosylation Sites on Human Platelet Proteins: A Glycoproteomic Approach
Urs Lewandrowski, Jan Moebius, Ulrich Walter, and Albert Sickmann
Mol Cell Proteomics (2006) 5(2): 226-233

New Data Analysis and Mining Approaches Identify Unique Proteome and Transcriptome Markers of Susceptibility to Autoimmune Diabetes
Ivan C. Gerling, Sudhir Singh, Nataliya I. Lenchik, Dana R. Marshall, and Jian Wu
Mol Cell Proteomics (2006) 5(2): 293-305

Recent developments in proteomics: implications for the study of cardiac hypertrophy and failure
Faber MJ, Agnetti G, Bezstarosti K, Lankhuizen IM, Dalinghaus M, Guarnieri C, Caldarera CM, Helbing WA, Lamers JM
Cell Biochem Biophys (2006) 44(1): 11-30

The application of mass spectrometry to identify immunogenic components of excretory/secretory products from adult Dictyocaulus viviparus
Matthews JB, Davidson AJ, Beynon RJ
Parasitology (2004) 128(S1): S43-S47

Discovering clinical biomarkers of ionizing radiation exposure with serum proteomic analysis
Menard C, Johann D, Lowenthal M, Muanza T, Sproull M, Ross S, Gulley J, Petricoin E, Coleman CN, Whiteley G, Liotta L, Camphausen K
Cancer Res (2006) 66(3): 1844-50

Proteomic Analysis of Serum Associated Fucosylated Glycoproteins in the Development of Primary Hepatocellular Carcinoma
Mary Ann Comunale , Melissa Lowman, Ronald E. Long, Jonathan Krakover, Ramila Philip, Steven Seeholzer, Alison A. Evans, Hie-Won L. Hann, Timothy M. Block, and Anand S. Mehta
JOURNAL OF PROTEOME RESEARCH (2006) 5(2): 308-315

Comparative Proteomics of Nasal Fluid in Seasonal Allergic Rhinitis
B. Ghafouri, K. Irander, J. Lindbom, C. Tagesson, and M. Lindahl
JOURNAL OF PROTEOME RESEARCH (2006) 5(2): 330-338

Comparison of the Protein Profile of Established and Regressed Hypertension-Induced Left Ventricular Hypertrophy
Julio Gallego-Delgado, Alberto Lazaro, Julio I. Osende, Maria G. Barderas, Maria C. Duran, Fernando Vivanco, and Jesus Egido
JOURNAL OF PROTEOME RESEARCH (2006) 5(2): 404-413

Proteomic Analysis of Malignant Ovarian Cancer Effusions as a Tool for Biologic and Prognostic Profiling
Davidson B, Espina V, Steinberg SM, Florenes VA, Liotta LA, Kristensen GB, Trope CG, Berner A, Kohn EC
Clin Cancer Res (2006) 12(3): 791-799

Redox proteomics identification of oxidatively modified hippocampal proteins in mild cognitive impairment: Insights into the development of Alzheimer's disease
Butterfield DA, Poon HF, St Clair D, Keller JN, Pierce WM, Klein JB, Markesbery WR
Neurobiol Dis Early Edition: published 6-Feb-2006

Peptidomics biomarker discovery in mouse models of obesity and type 2 diabetes
Budde P, Schulte I, Appel A, Neitz S, Kellmann M, Tammen H, Hess R, Rose H
Comb Chem High Throughput Screen (2005) 8(8): 775-81

Better Understanding of Organ Dysfunction Requires Proteomic Involvement
Xiangdong Wang, Kenneth B. Adler, Irshad H. Chaudry, and Peter A. Ward
JOURNAL OF PROTEOME RESEARCH Early Edition: published 03/03/2006

Molecular Profiling of Hepatocellular Carcinoma in Mice with a Chronic Deficiency of Hepatic S-Adenosylmethionine: Relevance in Human Liver Diseases
Enrique Santamaría, Javier Muñoz, Joaquín Fern ndez-Irigoyen, Laura Sesma, María I. Mora, Carmen Berasain, Shelly C. Lu, José M. Mato, Jesús Prieto, Matías A. Avila, and Fernando J. Corrales
JOURNAL OF PROTEOME RESEARCH Early Edition: published 03/03/2006

Proteomic studies on the white matter of human brain
Pozzi Mucelli S, Odreman F, Gonzales ML, Gerardi E, Stanta G, Vindigni A
J Chromatogr B Analyt Technol Biomed Life Sci Early Edition: published 14-Feb-2006

Proteomics profile changes in cisplatin-treated human ovarian cancer cell strain
Li Z, Zhao X, Yang J, Wei Y
Sci China C Life Sci (2005) 48(6): 648-57

Identification of potential CSF biomarkers in ALS
Pasinetti GM, Ungar LH, Lange DJ, Yemul S, Deng H, Yuan X, Brown RH, Cudkowicz ME, Newhall K, Peskind E, Marcus S, Ho L
Neurology Early Edition: published 15-Feb-2006

Identification, cloning, and expression of potential diagnostic markers for q Fever
Chao CC, Chen HW, Li X, Xu WB, Hanson B, Ching WM
Ann N Y Acad Sci (2005) 1063: 76-8.

Cochlin immunostaining of inner ear pathologic deposits and proteomic analysis in DFNA9 deafness and vestibular dysfunction
Robertson NG, Cremers CW, Huygen PL, Ikezono T, Krastins B, Kremer H, Kuo SF, Liberman MC, Merchant SN, Miller CE, Nadol JB Jr, Sarracino DA, Verhagen WI, Morton CC
Hum Mol Genet Early Edition: published 15-Feb-2006

Differential proteome analysis of tonsils from children with chronic tonsillitis or with hyperplasia reveals disease-associated protein expression differences
Just T, Gafumbegete E, Gramberg J, Prufer I, Mikkat S, Ringel B, Pau HW, Glocker MO
Anal Bioanal Chem Early Edition: published 15-Feb-2006

Proteomics: Clinical applications for head and neck squamous cell carcinoma
Yarbrough WG, Slebos RJ, Liebler D
Head Neck Early Edition: published 10-Feb-2006

Proteomic analysis of the response of EpiDerm(TM) cultures to sodium lauryl sulphate
Fletcher ST, Basketter DA
Toxicol In Vitro Early Edition: published 7-Feb-2006

Serum proteomic patterns associated with sleep-disordered breathing in children
Shah ZA, Jortani SA, Tauman R, Valdes R Jr, Gozal D
Pediatr Res (2006) 59(3): 466-70

Breast cancer proteomics using two-dimensional electrophoresis: studying the breast cancer proteome
Dwek MV, Rawlings SL
Methods Mol Med (2006) 120: 231-43

A proteome analysis of the anterior cingulate cortex gray matter in schizophrenia
Clark D, Dedova I, Cordwell S, Matsumoto I
Mol Psychiatry Early Edition: published 21-Feb-2006

Proteomic surveillance of autoantigens in relapsing polychondritis
Tanaka Y, Nakamura M, Matsui T, Iizuka N, Kondo H, Tohma S, Masuko K, Yudoh K, Nakamura H, Nishioka K, Koizuka I, Kato T
Microbiol Immunol (2006) 50(2): 117-26

Differential Modification of Phosducin Protein in Degenerating rd1 Retina Is Associated with Constitutively Active Ca2+/Calmodulin Kinase II in Rod Outer Segments
Stefanie M. Hauck, Per A. R. Ekstrom, Poonam Ahuja-Jensen, Sabine Suppmann, Francois Paquet-Durand, Theo van Veen, and Marius Ueffing
Mol Cell Proteomics (2006) 5(2): 324-336

The Turnover Kinetics of Major Histocompatibility Complex Peptides of Human Cancer Cells
Elena Milner, Eilon Barnea, Ilan Beer, and Arie Admon
Mol Cell Proteomics (2006) 5(2): 357-365

Comparative Proteomics of Pulmonary Tumors with Neuroendocrine Differentiation
Nam Hoon Cho, Eun Suk Koh, Haeryoung Kim, Youn Pyo Choi, Sang Ho Cho, and Dong Su, Kim
JOURNAL OF PROTEOME RESEARCH Early Edition: published 02/17/2006

Role of proteomics in translational research in cervical cancer
Eun-Kyoung Yim, Jong-Sup Park
Expert Review of Proteomics (2006) 3(1): 21-36

2D gel blood serum biomarkers reveal differential clinical proteomics of the neurodegenerative diseases
Essam A Sheta, Stanley H Appel, Ira L Goldknopf
Expert Review of Proteomics (2006) 3(1): 45-62

The phosphate-starvation response in Vibrio cholerae O1 and phoB mutant under proteomic analysis: Disclosing functions involved in adaptation, survival and virulence
Wanda Maria Almeida von Kr�ger, Leticia Miranda Santos Lery, Marcia Regina Soares, Fernanda Saloum de Neves-Manta, Celia Maria Batista e Silva, Ana Gisele da Costa Neves-Ferreira, Jonas Perales, Paulo Mascarello Bisch
PROTEOMICS (2006) 6(5): 1495-1511

Proteome analysis of glandular parotid and submandibular-sublingual saliva in comparison to whole human saliva by two-dimensional gel electrophoresis
Anke Walz, Kai St�hler, Andreas Wattenberg, Eva Hawranke, Helmut E. Meyer, Gottfried Schmalz, Martin Bl�ggel, Stefan Ruhl
PROTEOMICS (2006) 6(5): 1631-1639

Proteomic analysis reveals a novel role for the actin cytoskeleton in vincristine resistant childhood leukemia - An in vivo study
Nicole M. Verrills, Natalia L. Liem, Tracy Y. E. Liaw, Brian D. Hood, Richard B. Lock, Maria Kavallaris
PROTEOMICS (2006) 6(5): 1681-1694

Alpha tocopherol supplementation elevates plasma apolipoprotein A1 isoforms in normal healthy subjects
Sarah Aldred, Tommaso Sozzi, Ian Mudway, Melissa M. Grant, Hendrik Neubert, Frank J. Kelly, Helen R. Griffiths
PROTEOMICS (2006) 6(5): 1695-1703

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Eukaryotic Cells And Tissues

Value of proteomics applied to the follow-up in stem cell transplantation
Weissinger EM, Mischak H, Ganser A, Hertenstein B
Ann Hematol Early Edition: published 7-Feb-2006

Comparative analysis of the heat stable proteome of radicles of Medicago truncatula seeds during germination identifies late embryogenesis abundant proteins associated with desiccation tolerance
Boudet J, Buitink J, Hoekstra FA, Rogniaux H, Larre C, Satour P, Leprince O
Plant Physiol Early Edition: published 3-Feb-2006

Protein profiling of plastoglobules in chloroplasts and chromoplasts; a surprising site for differential accumulation of metabolic enzymes
Ytterberg AJ, Peltier JB, van Wijk KJ
Plant Physiol Early Edition: published 3-Feb-2006

Proteomic Analysis of Mature Melanosomes from the Retinal Pigmented Epithelium
Sassan M. Azarian, Ian McLeod, Concepcion Lillo, Daniel Gibbs, John R. Yates, and David S. Williams
JOURNAL OF PROTEOME RESEARCH Early Edition: published 02/03/2006

Human Lymphoblastoid Proteome Analysis Reveals a Role for the Inhibitor of Acetyltransferases Complex in DNA Double-Strand Break Response
Dirksen EH, Cloos J, Braakhuis BJ, Brakenhoff RH, Heck AJ, Slijper M
Cancer Res (2006) 66(3): 1473-1480

High-Throughput Identification of IMCD Proteins Using LC-MS/MS
Pisitkun T, Bieniek J, Tchapyjnikov D, Wang G, Wu WW, Shen RF, Knepper MA
Physiol Genomics Early Edition: published 31-Jan-2006

IN VIVO MEASUREMENT OF SYNTHESIS RATE OF MULTIPLE PLASMA PROTEINS IN HUMANS
Jaleel A, Nehra V, Persson XM, Boirie Y, Bigelow M, Nair KS
Am J Physiol Endocrinol Metab Early Edition: published 31-Jan-2006

Proteome analysis of rat liver mitochondria reveals a possible compensatory response to endotoxic shock
Miller I, Gemeiner M, Gesslbauer B, Kungl A, Piskernik C, Haindl S, Nurnberger S, Bahrami S, Redl H, Kozlov AV
FEBS Lett Early Edition: published 23-Jan-2006

Complexity of the human whole saliva proteome
Hirtz C, Chevalier F, Centeno D, Egea JC, Rossignol M, Sommerer N, de Periere D
J Physiol Biochem (2005) 61(3): 469-80

Comparative Proteomics Analysis of the Proteins Associated With Laryngeal Carcinoma-Related Gene 1
Zhang X, Xiao Z, Chen Z, Li C, Li J, Yanhui Y, Yang F, Yang Y, Oyang Y
Laryngoscope (2006) 116(2): 224-230

Analysis of the human sperm proteome
Johnston DS, Wooters J, Kopf GS, Qiu Y, Roberts KP
Ann N Y Acad Sci (2005) 1061: 190-202.

Towards Characterization of the Human Urinary Peptidome
Jurgens M, Appel A, Heine G, Neitz S, Menzel C, Tammen H, Zucht HD
Comb Chem High Throughput Screen (2005) 8(8): 757-765

Prerequisites for Peptidomic Analysis of Blood Samples: II. Analysis of Human Plasma after Oral Glucose Challenge - A Proof of Concept
Tammen H, Hess R, Schulte I, Kellmann M, Appel A, Budde P, Zucht HD, Schulz-Knappe P
Comb Chem High Throughput Screen (2005) 8(8): 735-41

Prerequisites for peptidomic analysis of blood samples: I. Evaluation of blood specimen qualities and determination of technical performance characteristics
Tammen H, Schulte I, Hess R, Menzel C, Kellmann M, Schulz-Knappe P
Comb Chem High Throughput Screen (2005) 8(8): 725-33

Rapid Proteome Analysis of Bronchoalveolar Lavage Samples of Lifelong Smokers and Never-Smokers by Micro-Scale Liquid Chromatography and Mass Spectrometry
Plymoth A, Yang Z, Lofdahl CG, Ekberg-Jansson A, Dahlback M, Fehniger TE, Marko-Varga G, Hancock WS
Clin Chem Early Edition: published 23-Feb-2006

Proteomic analyses of somatic and zygotic embryos of Cyclamen persicum Mill. reveal new insights into seed and germination physiology
Winkelmann T, Heintz D, Van Dorsselaer A, Serek M, Braun HP
Planta Early Edition: published 22-Feb-2006

Protein Expression Profiling of Coccidioides posadasii by Two-Dimensional Differential In-Gel Electrophoresis and Evaluation of a Newly Recognized Peroxisomal Matrix Protein as a Recombinant Vaccine Candidate
Orsborn KI, Shubitz LF, Peng T, Kellner EM, Orbach MJ, Haynes PA, Galgiani JN
Infect Immun (2006) 74(3): 1865-72

Mitochondrial Matrix Phosphoproteome: Effect of Extra Mitochondrial Calcium
Hopper RK, Carroll S, Aponte AM, Johnson DT, French S, Shen RF, Witzmann FA, Harris RA, Balaban RS
Biochemistry (2006) 45(8): 2524-2536

Proteomic analysis of human meibomian gland secretions
Tsai PS, Evans JE, Green KM, Sullivan RM, Schaumberg DA, Richards SM, Dana MR, Sullivan DA
Br J Ophthalmol (2006) 90(3): 372-7

Proteome analysis of rice root proteins regulated by gibberellin
Komatsu S, Konishi H
Genomics Proteomics Bioinformatics (2005) 3(3): 132-42

Differential Protein Profiling of Primary versus Immortalized Human RPE Cells Identifies Expression Patterns Associated with Cytoskeletal Remodeling and Cell Survival
Claudia S. Alge, Stefanie M. Hauck, Siegfried G. Priglinger, Anselm Kampik, and Marius Ueffing
JOURNAL OF PROTEOME RESEARCH Early Edition: published 02/24/2006

A Chick Retinal Proteome Database and Differential Retinal Protein Expressions during Early Ocular Development
Thomas C. Lam, King-Kit Li, Samuel C. L. Lo, Jeremy A. Guggenheim, and Chi Ho To
JOURNAL OF PROTEOME RESEARCH Early Edition: published 02/24/2006

Proteomics of the human malaria parasite Plasmodium falciparum
Paul FG Sims, John E Hyde
Expert Review of Proteomics (2006) 3(1): 87-95

Development and application of proteomics technologies in Saccharomyces cerevisiae
Annemieke Kolkman, Monique Slijper and Albert J.R. Heck
Trends in Biotechnology (2005) 23(12): 598-604

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Prokaryotes

Mass spectrometric sequencing of endotoxin proteins of Bacillus thuringiensis ssp. konkukian extracted from polyacrylamide gels
Kwang Yong Lee, Eun Young Kang, Sooil Park, Seong Kyu Ahn, Kwan Hee Yoo, Jin Young Kim, Hyung Hoan Lee
PROTEOMICS (2006) 6(5): 1512-1517

Proteomic profiling of cell envelope-associated proteins from Staphylococcus aureus
Christine L. Gatlin, Rembert Pieper, Shih-Ting Huang, Emmanuel Mongodin, Elizabeth Gebregeorgis, Prashanth P. Parmar, David J. Clark, Hamid Alami, Leka Papazisi, Robert D. Fleischmann, Steven R. Gill, Scott N. Peterson
PROTEOMICS (2006) 6(5): 1530-1549

Salt stress adaptation of Bacillus subtilis: A physiological proteomics approach
Dirk H�per, J�rg Bernhardt, Michael Hecker
PROTEOMICS (2006) 6(5): 1550-1562

Proteomic analysis of beryllium-induced genotoxicity in an Escherichia coli mutant model system
Kirsten J. Taylor-McCabe, Zaolin Wang, Nancy N. Sauer, Babetta L. Marrone
PROTEOMICS (2006) 6(5): 1663-1675

The extracellular proteome of Bacillus licheniformis grown in different media and under different nutrient starvation conditions
Birgit Voigt, Thomas Schweder, Mark J. J. B. Sibbald, Dirk Albrecht, Armin Ehrenreich, J�rg Bernhardt, J�rg Feesche, Karl-Heinz Maurer, Gerhard Gottschalk, Jan Maarten van Dijl, Michael Hecker
PROTEOMICS (2006) 6(5): 1704-1705

The structural proteome of Pseudomonas aeruginosa bacteriophage {phi}KMV
Lavigne R, Noben JP, Hertveldt K, Ceyssens PJ, Briers Y, Dumont D, Roucourt B, Krylov VN, Mesyanzhinov VV, Robben J, Volckaert G
Microbiology (2006) 152(Pt 2): 529-34

Matrix-assisted laser desorption ionization-time of flight mass spectrometry for the discrimination of food-borne microorganisms
Mazzeo MF, Sorrentino A, Gaita M, Cacace G, Di Stasio M, Facchiano A, Comi G, Malorni A, Siciliano RA
Appl Environ Microbiol (2006) 72(2): 1180-9

Determination and Comparison of the Baseline Proteomes of the Versatile Microbe Rhodopseudomonas palustris under Its Major Metabolic States
Nathan C. VerBerkmoes, Manesh B. Shah, Patricia K. Lankford, Dale A. Pelletier, Michael B. Strader, David L. Tabb, W. Hayes McDonald, John W. Barton, Gregory B. Hurst, Loren Hauser, Brian H. Davison, J. Thomas Beatty, Caroline S. Harwood, F. Robert Tabita, Robert L. Hettich, and Frank W. Larimer
JOURNAL OF PROTEOME RESEARCH (2006) 5(2): 287-298

Identification of the major outer membrane proteins of Aeromonas salmonicida
Ebanks RO, Goguen M, McKinnon S, Pinto DM, Ross NW
Dis Aquat Organ (2005) 68(1): 29-38

Comparative proteomics and immunoproteomics of Helicobacter pylori related to different gastric pathologies
Mini R, Bernardini G, Salzano AM, Renzone G, Scaloni A, Figura N, Santucci A
J Chromatogr B Analyt Technol Biomed Life Sci Early Edition: published 14-Feb-2006

Rickettsia conorii and R. prowazekii Proteome Analysis by 2DE-MS: A Step toward Functional Analysis of Rickettsial Genomes
Renesto P, Azza S, Dolla A, Fourquet P, Vestris G, Gorvel JP, Raoult D
Ann N Y Acad Sci (2005) 1063: 90-3.

Proteomic Analysis of Rickettsia prowazekii
Chao CC, Chelius D, Zhang T, Mutumanje E, Ching WM
Ann N Y Acad Sci (2005) 1063: 87-9.

New convenient defined media for [S]methionine labelling and proteomic analyses of probiotic lactobacilli
Savijoki K, Suokko A, Palva A, Varmanen P
Lett Appl Microbiol (2006) 42(3): 202-9

Analysis of the proteome of Pseudomonas putida KT2440 grown on different sources of carbon and energy
Kurbatov L, Albrecht D, Herrmann H, Petruschka L
Environ Microbiol (2006) 8(3): 466-78

Proteome of the Bacterium Mycoplasma penetrans
Mario Ferrer-Navarro, Antonio Gómez, Oscar Yanes, Raquel Planell, Francesc Xavier Avilés, Jaume Piñol, Josep Antoni Pérez Pons, and Enrique Querol
JOURNAL OF PROTEOME RESEARCH Early Edition: published 02/10/2006

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Pharmacology and Toxicology

Proteomic and biochemical analyses of in vitro carcinogen-induced lung cell transformation: Synergism between arsenic and benzo[a]pyrene
Andy T. Y. Lau, Jen-Fu Chiu
PROTEOMICS (2006) 6(5): 1619-1630

Identification of S-nitrosylated proteins after chronic exposure of colon epithelial cells to deoxycholate
Monique Dall'Agnol, Carol Bernstein, Harris Bernstein, Harinder Garewal, Claire M. Payne
PROTEOMICS (2006) 6(5): 1654-1662

Analysis of protein redox modification by hypoxia
Choi KS, Park SY, Baek SH, Dey-Rao R, Park YM, Zhang H, Ip C, Park EM, Hong Kim Y, Park JH
Prep Biochem Biotechnol (2006) 36(1): 65-79

Urine testing for designer steroids by liquid chromatography with androgen bioassay detection and electrospray quadrupole time-of-flight mass spectrometry identification
Nielen MW, Bovee TF, van Engelen MC, Rutgers P, Hamers AR, van Rhijn JH, Hoogenboom LR
Anal Chem (2006) 78(2): 424-31

Proteomic evaluation of neonatal exposure to 2,2 ,4,4 ,5-pentabromodiphenyl ether
Alm H, Scholz B, Fischer C, Kultima K, Viberg H, Eriksson P, Dencker L, Stigson M
Environ Health Perspect (2006) 114(2): 254-9

Genomic and proteomic approaches to vaccine candidate identification for Anaplasma marginale
Brayton KA, Palmer GH, Brown WC
Expert Rev Vaccines (2006) 5(1): 95-101

An approach to the validation of biomarkers of harm for use in a tobacco context
Gregg EO, Fisher AL, Lowe F, McEwan M, Massey ED
Regul Toxicol Pharmacol Early Edition: published 24-Jan-2006

Effects of Subminimum Inhibitory Concentrations of Antibiotics on the Pasteurella multocida Proteome
Bindu Nanduri, Mark L. Lawrence, Carolyn R. Boyle, Mahalingam Ramkumar, and Shane C. Burgess
JOURNAL OF PROTEOME RESEARCH Early Edition: published 02/03/2006

Proteome of Conidial Surface Associated Proteins of Aspergillus fumigatus Reflecting Potential Vaccine Candidates and Allergens
Abdul R. Asif, Michael Oellerich, Victor W. Amstrong, Birgit Riemenschneider, Michel Monod, and Utz Reichard
JOURNAL OF PROTEOME RESEARCH Early Edition: published 03/03/2006

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Protein Array

Is protein overlap in two-dimensional gels a serious practical problem?
Stephen W. Hunsucker, Mark W. Duncan
PROTEOMICS (2006) 6(5): 1374-1375

Functional peptide microarrays for specific and sensitive antibody diagnostics
Heiko Andresen, Carsten Gr�tzinger, Kim Zarse, Oliver J. Kreuzer, Eva Ehrentreich-F�rster, Frank F. Bier
PROTEOMICS (2006) 6(5): 1376-1384

Protein microarrays on hybrid polymeric thin films prepared by self-assembly of polyelectrolytes for multiple-protein immunoassays
Xichun Zhou, Jizhong Zhou
PROTEOMICS (2006) 6(5): 1415-1426

Protein chip based miniaturized assay for the simultaneous quantitative monitoring of cancer biomarkers in tissue extracts
Ulrike Weissenstein, Michael J. Schneider, Michael Pawlak, Jonas Cicenas, Serenella Eppenberger-Castori, Peter Oroszlan, Sabine Ehret, Anneke Geurts-Moespot, Fred C. G. J. Sweep, Urs Eppenberger
PROTEOMICS (2006) 6(5): 1427-1436

Comprehensive Protein Profiling by Multiplexed Capillary Zone Electrophoresis Using Cross-Linked Polyacrylamide Coated Capillaries
Shaorong Liu, Lin Gao, Qiaosheng Pu, Joann J. Lu, and Xingjia Wang
JOURNAL OF PROTEOME RESEARCH (2006) 5(2): 323-329

Pattern recognition of proteins based on an array of functionalized porphyrins
Zhou H, Baldini L, Hong J, Wilson AJ, Hamilton AD
J Am Chem Soc (2006) 128(7): 2421-5

Severe acute respiratory syndrome diagnostics using a coronavirus protein microarray
Heng Zhu, Shaohui Hu, Ghil Jona, Xiaowei Zhu, Nate Kreiswirth, Barbara M. Willey, Tony Mazzulli, Guozhen Liu, Qifeng Song, Peng Chen, Mark Cameron, Andrea Tyler, Jian Wang, Jie Wen, Weijun Chen, Susan Compton, and Michael Snyder
PNAS Early Edition: published 7 March 2006

ELISA microarray technology as a high-throughput system for cancer biomarker validation
Richard C Zangar, Don S Daly, Amanda M White
Expert Review of Proteomics (2006) 3(1): 37-44

Protein chips for high-throughput doping screening in athletes
Hongwu Du, Jing Cheng
Expert Review of Proteomics (2006) 3(1): 111-114

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Protein Characterization / PTMs

Automated Identification and Quantification of Protein Phosphorylation Sites by LC/MS on a Hybrid Triple Quadrupole Linear Ion Trap Mass Spectrometer
Brian L. Williamson, Jason Marchese, and Nicholas A. Morrice
Mol Cell Proteomics (2006) 5(2): 337-346

Phenylalanine 90 and 93 Are Localized within the Phenol Binding Site of Human UDP-Glucuronosyltransferase 1A10 as Determined by Photoaffinity Labeling, Mass Spectrometry, and Site-Directed Mutagenesis
Xiong Y, Bernardi D, Bratton S, Ward MD, Battaglia E, Finel M, Drake RR, Radominska-Pandya A
Biochemistry (2006) 45(7): 2322-2332

The Utility of N,N-Biotinyl Glutathione Disulfide in the Study of Protein S-Glutathiolation
Jonathan P. Brennan, Jonathan I. A. Miller, William Fuller, Robin Wait, Shajna Begum, Michael J. Dunn, and Philip Eaton
Mol Cell Proteomics (2006) 5(2): 215-225

Tools for Glycoproteomic Analysis: Size Exclusion Chromatography Facilitates Identification of Tryptic Glycopeptides with N-linked Glycosylation Sites
Gerardo Alvarez-Manilla, James Atwood III, Yan Guo, Nicole Lynn Warren, Ron Orlando, and Michael Pierce
JOURNAL OF PROTEOME RESEARCH Early Edition: published 02/17/2006

Method to Site-Specifically Identify and Quantitate Carbonyl End Products of Protein Oxidation Using Oxidation-Dependent Element Coded Affinity Tags (O-ECAT) and NanoLiquid Chromatography Fourier Transform Mass Spectrometry
Susan Lee, Nicolas L. Young, Paul A. Whetstone, Sarah M. Cheal, W. Henry Benner, Carlito B. Lebrilla, and Claude F. Meares
JOURNAL OF PROTEOME RESEARCH Early Edition: published 02/17/2006

Modification-Specific Proteomics of Plasma Membrane Proteins: Identification and Characterization of Glycosylphosphatidylinositol-Anchored Proteins Released upon Phospholipase D Treatment
Felix Elortza, Shabaz Mohammed, Jakob Bunkenborg, Leonard J. Foster, Thomas S. Nühse, Urs Brodbeck, Scott C. Peck, and Ole N. Jensen
JOURNAL OF PROTEOME RESEARCH Early Edition: published 02/24/2006

Manipulating the Fragmentation Patterns of Phosphopeptides via Gas-Phase Boron Derivatization: Determining Phosphorylation Sites in Peptides with Multiple Serines
Scott Gronert, Kathy H. Li and Mizue Horiuchi
Journal of the American Society for Mass Spectrometry (2005) 16(12): 1905-1914

Characterization of a New qQq-FTICR Mass Spectrometer for Post-Translational Modification Analysis and Top-Down Tandem Mass Spectrometry of Whole Proteins
Judith A. Jebanathirajah‡, Jason L. Pittmana, Bruce A. Thomsond, Bogdan A. Budnik, Parminder Kaurb, Michael Rapec, Marc Kirschnerc, Catherine E. Costello†, and Peter B. O'Connor†,
Journal of the American Society for Mass Spectrometry (2005) 16(12): 1985-1999

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Protein-protein interaction

Predicting Protein-Protein Interactions from Sequences in a Hybridization Space
Kuo-Chen Chou and Yu-Dong Cai
JOURNAL OF PROTEOME RESEARCH (2006) 5(2): 316-322

Identification of Subunit-Subunit Interactions in Bacteriophage P22 Procapsids by Chemical Cross-linking and Mass Spectrometry
Sebyung Kang, Adam M. Hawkridge, Kenneth L. Johnson, David C. Muddiman, and Peter E. Prevelige, Jr
JOURNAL OF PROTEOME RESEARCH (2006) 5(2): 370-377

An Integrated Mass Spectrometry-based Proteomic Approach: Quantitative Analysis of Tandem Affinity-purified in vivo Cross-linked Protein Complexes (qtax) to Decipher the 26 s Proteasome-interacting Network
Cortnie Guerrero, Christian Tagwerker, Peter Kaiser, and Lan Huang
Mol Cell Proteomics (2006) 5(2): 366-378

Characterization of the reaction products of cytochrome c with glutathione by mass spectrometry
Deng H
Biochem Biophys Res Commun Early Edition: published 2-Feb-2006

Identification of VCP/p97, Carboxyl Terminus of Hsp70-interacting Protein (CHIP), and Amphiphysin II Interaction Partners Using Membrane-based Human Proteome Arrays
Gerlinde Grelle, Susanne Kostka, Albrecht Otto, Birgit Kersten, Klaus F. Genser, Eva-Christina Muller, Stephanie Walter, Annett Boddrich, Ulrich Stelzl, Christian Hanig, Rudolf Volkmer-Engert, Christiane Landgraf, Simon Alberti, Jorg Hohfeld, Martin Strodicke, and Erich E. Wanker
Mol Cell Proteomics (2006) 5(2): 234-244

140 Mouse Brain Proteins Identified by Ca2+-Calmodulin Affinity Chromatography and Tandem Mass Spectrometry
Tord Berggård, Giorgio Arrigoni, Olof Olsson, Malin Fex, Sara Linse, and Peter James
JOURNAL OF PROTEOME RESEARCH Early Edition: published 02/17/2006

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Quantitation

Use of a fluorescent internal protein standard to achieve quantitative two-dimensional gel electrophoresis
�sa M. Wheelock, Dexter Morin, Matthew Bartosiewicz, Alan R. Buckpitt
PROTEOMICS (2006) 6(5): 1385-1398

Simultaneous proteomic profiling of four different growth states of human fibroblasts, using amine-reactive isobaric tagging reagents and tandem mass spectrometry
Cong YS, Fan E, Wang E
Mech Ageing Dev Early Edition: published 20-Jan-2006

Quantification of peptides for the monitoring of protease-catalyzed reactions by matrix-assisted laser desorption/ionization mass spectrometry using ionic liquid matrixes
Tholey A, Zabet-Moghaddam M, Heinzle E
Anal Chem (2005) 78(1): 291-7

Top-down approaches for measuring expression ratios of intact yeast proteins using fourier transform mass spectrometry
Du Y, Parks BA, Sohn S, Kwast KE, Kelleher NL
Anal Chem (2006) 78(3): 686-94

A sensitive method for the quantitative measurement of protein thiol modification in response to oxidative stress
Landar A, Oh JY, Giles NM, Isom A, Kirk M, Barnes S, Darley-Usmar VM
Free Radic Biol Med (2006) 40(3): 459-68

Combined Chemical and Enzymatic Stable Isotope Labeling for Quantitative Profiling of Detergent-Insoluble Membrane Proteins Isolated Using Triton X-100 and Brij-96
Josip Blonder, Li-Rong Yu, Galina Radeva, King C. Chan, David A. Lucas, Timothy J. Waybright, Haleem J. Issaq, Frances J. Sharom, and Timothy D. Veenstra
JOURNAL OF PROTEOME RESEARCH (2006) 5(2): 349-360

Absolute Myoglobin Quantitation in Serum by Combining Two-Dimensional Liquid Chromatography-Electrospray Ionization Mass Spectrometry and Novel Data Analysis Algorithms
Bettina M. Mayr, Oliver Kohlbacher, Knut Reinert, Marc Sturm, Clemens Gröpl, Eva Lange, Christoph Klein, and Christian G. Huber
JOURNAL OF PROTEOME RESEARCH (2006) 5(2): 414-421

Automated Comparative Proteomics Based on Multiplex Tandem Mass Spectrometry and Stable Isotope Labeling
Guoan Zhang and Thomas A. Neubert
Mol Cell Proteomics (2006) 5(2): 401-411

A visual approach to proteomics
Nickell S, Kofler C, Leis AP, Baumeister W
Nat Rev Mol Cell Biol Early Edition: published 15-Feb-2006

Quantitative Phosphotyrosine Proteomics of EphB2 Signaling by Stable Isotope Labeling with Amino Acids in Cell Culture (SILAC)
Guoan Zhang, Daniel S. Spellman, Edward Y. Skolnik, and Thomas A. Neubert
JOURNAL OF PROTEOME RESEARCH Early Edition: published 02/10/2006

Comparative Study of Three Proteomic Quantitative Methods, DIGE, cICAT, and iTRAQ, Using 2D Gel- or LC-MALDI TOF/TOF
Wells W. Wu, Guanghui Wang, Seung Joon Baek, and Rong-Fong Shen
JOURNAL OF PROTEOME RESEARCH Early Edition: published 02/10/2006

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Review

Advances in proteomics data analysis and display using an accurate mass and time tag approach
Zimmer JS, Monroe ME, Qian WJ, Smith RD
Mass Spectrom Rev Early Edition: published 20-Jan-2006

Chemical tools for activity-based proteomics
Hagenstein MC, Sewald N
J Biotechnol Early Edition: published 24-Jan-2006

The peptidomics concept
Schulz-Knappe P, Schrader M, Zucht HD
Comb Chem High Throughput Screen (2005) 8(8): 697-704

Proteomics in nutrition and health
Kussmann M, Affolter M, Fay LB
Comb Chem High Throughput Screen (2005) 8(8): 679-96

Gel-based versus gel-free proteomics: a review
Baggerman G, Vierstraete E, De Loof A, Schoofs L
Comb Chem High Throughput Screen (2005) 8(8): 669-77

Proteomics of the heart: unraveling disease
McGregor E, Dunn MJ
Circ Res (2006) 98(3): 309-21

Ovarian cancer screening: a look at the evidence
Fields MM, Chevlen E
Clin J Oncol Nurs (2006) 10(1): 77-81

Dissecting the Rickettsia prowazekii Genome: Genetic and Proteomic Approaches
Tucker AM, Pannell LK, Wood DO
Ann N Y Acad Sci (2005) 1063: 35-46.

Proteomics in medicinal chemistry
Niwayama S
Mini Rev Med Chem (2006) 6(2): 241-6

The evolving role of proteomics in the early detection of breast cancer
Pawlik TM, Kuerer HM
Int J Fertil Womens Med (2005) 50(5 Pt 1): 212-6

Neuroproteomics in neurotrauma
Ottens AK, Kobeissy FH, Golden EC, Zhang Z, Haskins WE, Chen SS, Hayes RL, Wang KK, Denslow ND
Mass Spectrom Rev Early Edition: published 23-Feb-2006

Mapping normal and cancer cell signalling networks: towards single-cell proteomics
Irish JM, Kotecha N, Nolan GP
Nat Rev Cancer (2006) 6(2): 146-55

Central nervous system drug development: an integrative biomarker approach toward individualized medicine
Gomez-Mancilla B, Marrer E, Kehren J, Kinnunen A, Imbert G, Hillebrand R, Bergstrom M, Schmidt ME
NeuroRx (2005) 2(4): 683-95

Role of proteomics in translational research in cervical cancer
Eun-Kyoung Yim, Jong-Sup Park
Expert Review of Proteomics (2006) 3(1): 21-36

ELISA microarray technology as a high-throughput system for cancer biomarker validation
Richard C Zangar, Don S Daly, Amanda M White
Expert Review of Proteomics (2006) 3(1): 37-44

2D gel blood serum biomarkers reveal differential clinical proteomics of the neurodegenerative diseases
Essam A Sheta, Stanley H Appel, Ira L Goldknopf
Expert Review of Proteomics (2006) 3(1): 45-62

Discovery of regulatory molecular events and biomarkers using 2D capillary chromatography and mass spectrometry
David W Powell, Michael L Merchant, Andrew J Link
Expert Review of Proteomics (2006) 3(1): 63-74

Delineating signal transduction pathways in smooth muscle through focused proteomics
Laura Hagerty, Timothy AJ Haystead
Expert Review of Proteomics (2006) 3(1): 75-85

Proteomics of the human malaria parasite Plasmodium falciparum
Paul FG Sims, John E Hyde
Expert Review of Proteomics (2006) 3(1): 87-95

Protein turnover on the scale of the proteome
Mary K Doherty, Robert J Beynon
Expert Review of Proteomics (2006) 3(1): 97-110

Protein chips for high-throughput doping screening in athletes
Hongwu Du, Jing Cheng
Expert Review of Proteomics (2006) 3(1): 111-114

Highbrow proteasome in high-throughput technology
Maria Gaczynska, Karl Rodriguez, Srividya Madabhushi, Pawel A Osmulski
Expert Review of Proteomics (2006) 3(1): 115-127

Effects of post-electrophoretic analysis on variance in gel-based proteomics
Asa M Wheelock, Susumu Goto
Expert Review of Proteomics (2006) 3(1): 129-142

Recent developments in ion-trap mass spectrometry and related technologies
Francesco L Brancia
Expert Review of Proteomics (2006) 3(1): 143-151

Surface-assisted laser desorption/ionization mass spectrometry
Andrew M Dattelbaum, Srinivas Iyer
Expert Review of Proteomics (2006) 3(1): 153-161

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Methodology

Reduction of proteins during sample preparation and two-dimensional gel electrophoresis of woody plant samples
Cristina-Maria V�lcu, Katja Schlink
PROTEOMICS (2006) 6(5): 1599-1605

Changes in cod muscle proteins during frozen storage revealed by proteome analysis and multivariate data analysis
Inger V. H. Kj�rsg�rd, Mette R. N�rrelykke, Flemming Jessen
PROTEOMICS (2006) 6(5): 1606-1618

SELDI-TOF MS of quadruplicate urine and serum samples to evaluate changes related to storage conditions
Avram Z. Traum, Meghan P. Wells, Manuel Aivado, Towia A. Libermann, Marco F. Ramoni, Asher D. Schachter
PROTEOMICS (2006) 6(5): 1676-1680

Evaluation of two-beam fluorescence cross correlation spectroscopy for electrophoretic analysis of protein digests
Brister PC, Weston KD
Analyst (2006) 131(2): 303-10

Evaluation of a sensitive detection method for peptide arrays prepared by SPOT synthesis
Durauer A, Kopecky E, Berger E, Seifert M, Hahn R, Jungbauer A
J Biochem Biophys Methods Early Edition: published 27-Dec-2005

Analysis of Human Plasma Proteome by 2DE- and 2D nanoLC-Based Mass Spectrometry
Choi KS, Song L, Park YM, Marshall J, Lund AL, Shion H, Park EM, Chae HZ, Park JH
Prep Biochem Biotechnol (2006) 36(1): 3-17

Proteomics and Bioinformatics Strategies to Design Countermeasures against Infectious Threat Agents
Khan AS, Mujer CV, Alefantis TG, Connolly JP, Mayr UB, Walcher P, Lubitz W, Delvecchio VG
J Chem Inf Model (2006) 46(1): 111-5

Quantitating the statistical distribution of deuterium incorporation to extend the utility of H/D exchange MS data
Chik JK, Vande Graaf JL, Schriemer DC
Anal Chem (2005) 78(1): 207-14

Efficient and specific trypsin digestion of microgram to nanogram quantities of proteins in organic-aqueous solvent systems
Strader MB, Tabb DL, Hervey WJ, Pan C, Hurst GB
Anal Chem (2005) 78(1): 125-34

Development of biosensors for cancer clinical testing
Rasooly A, Jacobson J
Biosens Bioelectron Early Edition: published 31-Jan-2006

A Novel Two-dimensional Electrophoresis Technique for the Identification of Intrinsically Unstructured Proteins
Veronika Csizmok, Edit Szollosi, Peter Friedrich, and Peter Tompa
Mol Cell Proteomics (2006) 5(2): 265-273

Automated acoustic matrix deposition for MALDI sample preparation
Aerni HR, Cornett DS, Caprioli RM
Anal Chem (2006) 78(3): 827-34

Multilayer-assembled microchip for enzyme immobilization as reactor toward low-level protein identification
Liu Y, Lu H, Zhong W, Song P, Kong J, Yang P, Girault HH, Liu B
Anal Chem (2006) 78(3): 801-8

Solvent-dependent metabolite distribution, clustering, and protein extraction for serum profiling with mass spectrometry
Want EJ, O'Maille G, Smith CA, Brandon TR, Uritboonthai W, Qin C, Trauger SA, Siuzdak G
Anal Chem (2006) 78(3): 743-52

Gold-enhanced biomolecular surface imaging of cells and tissue by SIMS and MALDI mass spectrometry
Altelaar AF, Klinkert I, Jalink K, de Lange RP, Adan RA, Heeren RM, Piersma SR
Anal Chem (2006) 78(3): 734-42

Quantitative Comparison of Proteomic Data Quality between a 2D and 3D Quadrupole Ion Trap
Blackler AR, Klammer AA, Maccoss MJ, Wu CC
Anal Chem (2006) 78(4): 1337-44

Comparison of Two Proteomics Techniques Used to Identify Proteins Regulated by Gibberellin in Rice
Setsuko Komatsu, Xin Zang, and Naoki Tanaka
JOURNAL OF PROTEOME RESEARCH (2006) 5(2): 270-276

Coupling the Immobilized Trypsin Microreactor of Monolithic Capillary with RPLC-MS/MS for Shotgun Proteome Analysis
Shun Feng, Mingliang Ye, Xiaogang Jiang, Wenhai Jin, and Hanfa Zou
JOURNAL OF PROTEOME RESEARCH (2006) 5(2): 422-428

On-Line Concentration of Microheterogeneous Proteins by Capillary Electrophoresis Using SDS and PEO as Additives
Yu-Fen Huang, Ming-Mu Hsieh, Wei-Lung Tseng, and Huan-Tsung Chang
JOURNAL OF PROTEOME RESEARCH (2006) 5(2): 429-436

Pre-extraction Sample Handling by Automated Frozen Disruption Significantly Improves Subsequent Proteomic Analyses
R. Hussain Butt and Jens R. Coorssen
JOURNAL OF PROTEOME RESEARCH (2006) 5(2): 437-448

Reducing protein concentration range of biological samples using solid-phase ligand libraries
Guerrier L, Thulasiraman V, Castagna A, Fortis F, Lin S, Lomas L, Righetti PG, Boschetti E
J Chromatogr B Analyt Technol Biomed Life Sci Early Edition: published 30-Jan-2006

Analysis of Membrane Proteins from Human Chronic Myelogenous Leukemia Cells: Comparison of Extraction Methods for Multidimensional LC-MS/MS
Mariah C. Ruth, William M. Old, Michelle A. Emrick, Karen Meyer-Arendt, Lauren D. Aveline-Wolf, Kevin G. Pierce, Alex M. Mendoza, Joel R. Sevinsky, Micah Hamady, Robin D. Knight, Katheryn A. Resing, and Natalie G. Ahn
JOURNAL OF PROTEOME RESEARCH Early Edition: published 02/03/2006

Beyond Linker Histones and High Mobility Group Proteins: Global Profiling of Perchloric Acid Soluble Proteins
Alexandre Zougman and Jacek R. Wi niewski
JOURNAL OF PROTEOME RESEARCH Early Edition: published 03/03/2006

Automated method for measuring globin adducts of acrylamide and glycidamide at optimized Edman reaction conditions
Hubert W. Vesper, Maria Ospina, Tunde Meyers, Leigha Ingham, Antoinette Smith, J. Gibson Gray, Gary L. Myers
Rapid Communications in Mass Spectrometry (2006) 20(6): 959-964

Fast, high-efficiency peptide separations on a 50-mum reversed-phase silica monolith in a nanoLC-MS set-up
Rieux L, Lubda D, Niederlander HA, Verpoorte E, Bischoff R
J Chromatogr A Early Edition: published 1-Feb-2006

Applications of multi-angle laser light-scattering detection in the analysis of peptides and proteins
Oliva A, Llabres M, Farina JB
Curr Drug Discov Technol (2004) 1(3): 229-42

Ion channel drug discovery and research: the automated Nano-Patch-Clamp technology
Brueggemann A, George M, Klau M, Beckler M, Steindl J, Behrends JC, Fertig N
Curr Drug Discov Technol (2004) 1(1): 91-6

Affinity monolithic capillary columns for glycomics/proteomics: 1. Polymethacrylate monoliths with immobilized lectins for glycoprotein separation by affinity capillary electrochromatography and affinity nano-liquid chromatography in either a single column or columns coupled in series
Okanda FM, El Rassi Z
Electrophoresis Early Edition: published 7-Feb-2006

Proteome analysis of human plasma and amniotic fluid by Off-Geltrade mark isoelectric focusing followed by nano-LC-MS/MS
Michel PE, Crettaz D, Morier P, Heller M, Gallot D, Tissot JD, Reymond F, Rossier JS
Electrophoresis Early Edition: published 7-Feb-2006

Less common applications of monoliths: I. Microscale protein mapping with proteolytic enzymes immobilized on monolithic supports
Svec F
Electrophoresis Early Edition: published 7-Feb-2006

Targeted comparative proteomics by liquid chromatography/matrix-assisted laser desorption/ionization triple-quadrupole mass spectrometry
Melanson JE, Chisholm KA, Pinto DM
Rapid Commun Mass Spectrom (2006) 20(5): 904-10

Identification of Mammalian Cell Lines Using MALDI-TOF and LC-ESI-MS/MS Mass Spectrometry
Zhang X, Scalf M, Berggren TW, Westphall MS, Smith LM
J Am Soc Mass Spectrom Early Edition: published 15-Feb-2006

Different Impact of Staining Procedures Using Visible Stains and Fluorescent Dyes for Large-Scale Investigation of Proteomes by MALDI-TOF Mass Spectrometry
François Chevalier, Delphine Centeno, Valérie Rofidal, Marc Tauzin, Olivier Martin, Nicolas Sommerer, and Michel Rossignol
JOURNAL OF PROTEOME RESEARCH Early Edition: published 02/10/2006

A Novel Subtractive Antibody Phage Display Method to Discover Disease Markers
Danielle Hof, Kalok Cheung, Hilde E. Roossien, Ger J. M. Pruij, and Jos M. H. Raats
Mol Cell Proteomics (2006) 5(2): 245-255

Proteins Exposed at the Adult Schistosome Surface Revealed by Biotinylation
Simon Braschi and R. Alan Wilson
Mol Cell Proteomics (2006) 5(2): 347-356

Proteomic Analysis of Brain Plasma Membranes Isolated by Affinity Two-phase Partitioning
Jens Schindler, Urs Lewandrowski, Albert Sickmann, Eckhard Friauf, andHans Gerd Nothwang
Mol Cell Proteomics (2006) 5(2): 390-400

Effects of Modified Digestion Schemes on the Identification of Proteins from Complex Mixtures
Aaron A. Klammer and Michael J. MacCoss
JOURNAL OF PROTEOME RESEARCH Early Edition: published 02/17/2006

Integration of a Two-Phase Partition Method into Proteomics Research on Rat Liver Plasma Membrane Proteins
Rui Cao, Xuanwen Li, Zhen Liu, Xia Peng, Weijun Hu, Xianchun Wang, Ping Chen, Jingyun Xie, and Songping Liang
JOURNAL OF PROTEOME RESEARCH Early Edition: published 02/17/2006

Probing Cysteine Reactivity in Proteins by Mass Spectrometric EC-Tagging
Loïc Dayon, Christophe Roussel, and Hubert H. Girault
JOURNAL OF PROTEOME RESEARCH Early Edition: published 02/24/2006

Discovery of regulatory molecular events and biomarkers using 2D capillary chromatography and mass spectrometry
David W Powell, Michael L Merchant, Andrew J Link
Expert Review of Proteomics (2006) 3(1): 63-74

Recent developments in ion-trap mass spectrometry and related technologies
Francesco L Brancia
Expert Review of Proteomics (2006) 3(1): 143-151

Surface-assisted laser desorption/ionization mass spectrometry
Andrew M Dattelbaum, Srinivas Iyer
Expert Review of Proteomics (2006) 3(1): 153-161

Nanotechnologies in proteomics
Yuri D. Ivanov, Vadim M. Govorun, Victor A. Bykov, Alexander I. Archakov
PROTEOMICS (2006) 6(5): 1399-1414

Advancement in fluorescent detection of protein following electrophoresis
Jason R. Stephenson and Marjorie A. Jones
Analytical Biochemistry (2005) 346(2): 342-343

New and Automated MSn Approaches for Top-Down Identification of Modified Proteins
Vlad Zabrouskova, Michael W. Senkoa, Yi Dub, Richard D. Leducb and Neil L. Kelleherb,
Journal of the American Society for Mass Spectrometry (2005) 16(12): 2027-2038

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Books

Book Review: Protein-protein interactions: Methods and applications. By Haian Fu (Ed.)
Wayne F. Patton
PROTEOMICS (2006) 6(5): 1706

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Meeting

Proteome Society Meeting
Feng Tao, Gary Smejkal
Expert Review of Proteomics (2006) 3(1): 7-8

Electrophoresis in 2005: 22nd Annual Meeting of the American Electrophoresis Society
David E Garfin
Expert Review of Proteomics (2006) 3(1): 9-19

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Other

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