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SPS' DigestIssue 34, 13-Oct-2006 |
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IndexToolkit: an open source toolbox to index protein databases for high-throughput proteomics
Li D, Gao W, Ling CX, Wang X, Sun R, He S.
Bioinformatics Early Edition: published 31-Aug-2006
Databases and resources for in silico proteome analysis
Pruess M, Kersey P, Kulikova T, Apweiler R.
Methods Biochem Anal (2006) 49: 397-414
An evaluation for cross-species proteomics research by publicly available expressed sequence tag database search using tandem mass spectral data
Mei Huang, Tong Chen, ZhuLong Chan
Rapid Communications in Mass Spectrometry (2006) 20(18): 2635-2640
TOOLbox: PROMPT for comparisons | msInspect | Rapid peptide identifications | MeMo for metabolomics data
JOURNAL OF PROTEOME RESEARCH (2006) 5(9): 2072-2073
Generalized modeling of enzyme-ligand interactions using proteochemometrics and local protein substructures
Strombergsson H, Kryshtafovych A, Prusis P, Fidelis K, Wikberg JE, Komorowski J, Hvidsten TR.
Proteins Early Edition: published 31-Aug-2006
Differential expression analysis of Escherichia coli proteins using a novel software for relative quantitation of LC-MS/MS data
Carolina Johansson, Jenny Samskog, Lars Sundström, Henrik Wadensten, Lennart Björkesten, John Flensburg
PROTEOMICS (2006) 6(16): 4475-4485
The Work of the Human Proteome Organisation's Proteomics Standards Initiative (HUPO PSI).
Taylor CF, Hermjakob H, Julian RK, Garavelli JS, Aebersold R, Apweiler R.
OMICS (2006) 10(2): 145-51
A comprehensive dictionary of protein accession codes for complete protein accession identifier alias resolving
Andreas M. Boehm, Albert Sickmann
PROTEOMICS (2006) 6(15): 4223-4226
Predicting Eukaryotic Protein Subcellular Location by Fusing Optimized Evidence-Theoretic K-Nearest Neighbor Classifiers
Kuo-Chen Chou and Hong-Bin Shen
JOURNAL OF PROTEOME RESEARCH (2006) 5(8): 1888-1897
Improved peak detection in mass spectrum by incorporating continuous wavelet transform-based pattern matching
Pan Du, Warren A. Kibbe, and Simon M. Lin
Bioinformatics (2006) 22(17): 2059-2065
DivergentSet, a Tool for Picking Non-redundant Sequences from Large Sequence Collections
Jeremy Widmann, Micah Hamady, and Rob Knight
Mol Cell Proteomics (2006) 5(8): 1520-1532
Toward a comprehensive quantitative proteome database: protein expression map of lymphoid neoplasms by 2-D DIGE and MS
Kazuyasu Fujii, Tadashi Kondo, Masayo Yamada, Keiji Iwatsuki, Setsuo Hirohashi
PROTEOMICS (2006) 6(17): 4856-4876
Concept of Sample in OMICS Technology.
Morrison N, Cochrane G, Faruque N, Tatusova T, Tateno Y, Hancock D, Field D.
OMICS (2006) 10(2): 127-37
Huge proteins in the human proteome and their participation in hereditary diseases
Sakharkar MK, Kangueane P, Sakharkar KR, Zhong Z.
In Silico Biol (2006) 6(4): 0026
A lock-and-key model for protein-protein interactions
Julie L. Morrison, Rainer Breitling, Desmond J. Higham, and David R. Gilbert
Bioinformatics (2006) 22(16): 2012-2019
Analysis of Peptide MS/MS Spectra from Large-Scale Proteomics Experiments Using Spectrum Libraries
Frewen BE, Merrihew GE, Wu CC, Noble WS, Maccoss MJ.
Anal Chem (2006) 78(16): 5678-84
Identification of biomarkers from mass spectrometry data using a "common" peak approach
Fushiki T, Fujisawa H, Eguchi S.
BMC Bioinformatics (2006) 7(1): 358
NetAlign: a web-based tool for comparison of protein interaction networks
Zhi Liang, Meng Xu, Maikun Teng, and Liwen Niu
Bioinformatics (2006) 22(17): 2175-2177
An initial strategy for comparing proteins at the domain architecture level
Kui Lin, Lei Zhu, and Da-Yong Zhang
Bioinformatics (2006) 22(17): 2081-2086
JVirGel 2.0: computational prediction of proteomes separated via two dimensional gel electrophoresis under consideration of membrane and secreted proteins
Hiller K, Grote A, Maneck M, Munch R, Jahn D.
Bioinformatics Early Edition: published 26-Jul-2006
FuGE: Functional Genomics Experiment Object Model.
Jones AR, Pizarro A, Spellman P, Miller M.
OMICS (2006) 10(2): 179-84
GenePro: a cytoscape plug-in for advanced visualization and analysis of interaction networks
James Vlasblom, Samuel Wu, Shuye Pu, Mark Superina, Gina Liu, Chris Orsi, and Shoshana J. Wodak
Bioinformatics (2006) 22(17): 2178-2179
Rank information: A structure-independent measure of evolutionary trace quality that improves identification of protein functional sites
Yao H, Mihalek I, Lichtarge O.
Proteins Early Edition: published 7-Aug-2006
The Pathway Tools cellular overview diagram and Omics Viewer
Paley SM, Karp PD.
Nucl Acids Res (2006) 34(13): 3779-86
A statistical method for chromatographic alignment of LC-MS data.
Wang P, Coram M, Tang H, Fitzgibbon MP, Zhang H, Yi E, Aebersold R, McIntosh M.
Biostatistics Early Edition: published 2-Aug-2006
Viewing the proteome from oligopeptides and prediction of protein function.
Horai H, Doi K, Doi H.
Genome Inform (2005) 16(2): 174-82
Chromatographic Alignment of ESI-LC-MS Proteomics Data Sets by Ordered Bijective Interpolated Warping
John T. Prince and Edward M. Marcotte
ANALYTICAL CHEMISTRY (2006) 78(17): 6140-6152
Rapid Validation of Protein Identifications with the Borderline Statistical Confidence via De Novo Sequencing and MS BLAST Searches
Natalie Wielsch, Henrik Thomas, Vineeth Surendranath, Patrice Waridel, Ari Frank, Pavel Pevzner, and Andrej Shevchenko
JOURNAL OF PROTEOME RESEARCH (2006) 5(9): 2448-2456
A database of unique protein sequence identifiers for proteome studies
György Babnigg, Carol S. Giometti
PROTEOMICS (2006) 6(16): 4514-4522
Identification of biomarkers from mass spectrometry data using a "common" peak approach
Tadayoshi Fushiki , Hironori Fujisawa and Shinto Eguchi
BMC Bioinformatics (2006) 7: 358
The ciliary proteome database: an integrated community resource for the genetic and functional dissection of cilia
Gherman A, Davis EE, Katsanis N.
Nat Genet (2006) 38(9): 961-2
General framework for developing and evaluating database scoring algorithms using the TANDEM search engine
Maclean B, Eng JK, Beavis RC, McIntosh M.
Bioinformatics Early Edition: published 28-Jul-2006
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Gaining knowledge from previously unexplained spectra-application of the PTM-Explorer software to detect PTM in HUPO BPP MS/MS data
Daniel C. Chamrad, Gerhard Körting, Heike Schäfer, Christian Stephan, Herbert Thiele, Rolf Apweiler, Helmut E. Meyer, Katrin Marcus, Martin Blüggel
PROTEOMICS (2006) 6(18): 5048-5058
The number of genes changing expression after chronic exposure to Code Division Multiple Access or Frequency DMA radiofrequency radiation does not exceed the false-positive rate
Timothy D. Whitehead, Eduardo G. Moros, Bernard H. Brownstein, Joseph L. Roti Roti
PROTEOMICS (2006) 6(17): 4739-4744
Evaluation of 2-DE protein patterns from pre- and postnatal stages of the mouse brain
Ingo Seefeldt, Grit Nebrich, Irmgard Römer, Lei Mao, Joachim Klose
PROTEOMICS (2006) 6(18): 4932-4939
Shotgun proteomic analysis of human-induced sputum
Ben Nicholas, Paul Skipp, Richard Mould, Stephen Rennard, Donna E. Davies, C. David O'Connor, Ratko Djukanovi?
PROTEOMICS (2006) 6(15): 4390-4401
Comparative proteome analyses of maize (Zea mays L.) primary roots prior to lateral root initiation reveal differential protein expression in the lateral root initiation mutant rum1
Yan Liu, Tobias Lamkemeyer, Andreas Jakob, Guohua Mi, Fusuo Zhang, Alfred Nordheim, Frank Hochholdinger
PROTEOMICS (2006) 6(15): 4300-4308
A Combined Shotgun and Multidimensional Proteomic Analysis of the Insoluble Subproteome of the Obligate Thermophile, Geobacillus thermoleovorans T80
Robert Leslie James Graham, S. Naomi O'Loughlin, Catherine E. Pollock, Nigel G. Ternan, D. Brent Weatherly, Philip J. Jackson, Rick L. Tarleton, and Geoff McMullan
JOURNAL OF PROTEOME RESEARCH (2006) 5(9): 2465-2473
Proteomic and biochemical analysis of purified human immunodeficiency virus type 1 produced from infected monocyte-derived macrophages
Chertova E, Chertov O, Coren LV, Roser JD, Trubey CM, Bess JW Jr, Sowder RC 2nd, Barsov E, Hood BL, Fisher RJ, Nagashima K, Conrads TP, Veenstra TD, Lifson JD, Ott DE.
J Virol (2006) 80(18): 9039-52
A targeted proteomic approach for the analysis of rat liver mitochondrial outer membrane proteins with extensive sequence coverage
Distler AM, Kerner J, Peterman SM, Hoppel CL.
Anal Biochem Early Edition: published 3-May-2006
Predominant Expression of Diploid Mandarin Leaf Proteome in Two Citrus Mandarin-Derived Somatic Allotetraploid Hybrids
Gancel AL, Grimplet J, Sauvage FX, Ollitrault P, Brillouet JM.
J Agric Food Chem (2006) 54(17): 6212-6218
Oxidation of bacterial proteome in response to starvation
Nystrom T.
Methods Biochem Anal (2006) 49: 89-95
A Proteomic (SELDI-TOF-MS) Approach to Estrogen Agonist Screening
Walker CC, Salinas KA, Harris PS, Wilkinson SS, Watts JD, Hemmer MJ.
Toxicol Sci Early Edition: published 17-Aug-2006
Quintessence from proteomics networks - the HUPO Brain Proteome Project Pilot Studies
Helmut E. Meyer, Michael Hamacher
PROTEOMICS (2006) 6(18): 4887-4889
Proteomic and genomic characterization of Kunitz trypsin inhibitors in wild and cultivated soybean genotypes
Natarajan S, Xu C, Bae H, Bailey BA.
J Plant Physiol Early Edition: published 31-Jul-2006
Proteomic Analysis of Effect of Hyperthermia on Spermatogenesis in Adult Male Mice
Ye-Fei Zhu, Yu-Gui Cui, Xue-Jiang Guo, Lei Wang, Ye Bi, Yan-Qiu Hu, Xin Zhao, Quan Liu, Ran Huo, Min Lin, Zuo-Min Zhou, and Jia-Hao Sha
JOURNAL OF PROTEOME RESEARCH (2006) 5(9): 2217-2225
Patatins, Kunitz protease inhibitors and other major proteins in tuber of potato cv. Kuras
Bauw G, Nielsen HV, Emmersen J, Nielsen KL, Jorgensen M, Welinder KG.
FEBS J (2006) 273(15): 3569-84
Proteomic identification of human sperm proteins
Juan Martínez-Heredia, Josep Maria Estanyol, José Luis Ballescà, Rafael Oliva
PROTEOMICS (2006) 6(15): 4356-4369
Identification of 491 proteins in the tear fluid proteome reveals a large number of proteases and protease inhibitors.
de Souza GA, Godoy LM, Mann M.
Genome Biol (2006) 7(8): R72
A comparison of the HUPO Brain Proteome Project pilot with other proteomics studies
Lennart Martens, Michael Müller, Christian Stephan, Michael Hamacher, Kai A. Reidegeld, Helmut E. Meyer, Martin Blüggel, Joël Vandekerckhove, Kris Gevaert, Rolf Apweiler
PROTEOMICS (2006) 6(18): 5076-5086
Proteomic analysis of the major envelope and nucleocapsid proteins of white spot syndrome virus (WSSV)
Xie X, Xu L, Yang F.
J Virol Early Edition: published 24-Aug-2006
The discovery of labile methyl esters on proliferating cell nuclear antigen by MS/MS
Derek J. Hoelz, Randy J. Arnold, Lacey E. Dobrolecki, Waleed Abdel-Aziz, Andrew P. Loehrer, Milos V. Novotny, Lauren Schnaper, Robert J. Hickey , Linda H. Malkas
PROTEOMICS (2006) 6(17): 4808-4816
The need for a new approach in studies of the biological effects of electromagnetic fields
Dariusz Leszczynski
PROTEOMICS (2006) 6(17): 4671-4673
Protein and lipid composition analysis of oil bodies from two Brassica napus cultivars
Vesna Katavic, Ganesh Kumar Agrawal, Martin Hajduch, Stefan L. Harris, Jay J. Thelen
PROTEOMICS (2006) 6(16): 4586-4598
Mass spectrometry assisted assignments of binding and cleavage sites of copper(II) and platinum(II) complexes towards oxidized insulin B chain
Jin Hong, Ren Miao, Chunmei Zhao, Jiang Jiang, Huiwei Tang, Zijian Guo, Longgen Zhu
Journal of Mass Spectrometry (2006) 41(8): 1061-1072
The power of cooperative investigation: Summary and comparison of the HUPO Brain Proteome Project pilot study results
Kai A. Reidegeld, Michael Müller, Christian Stephan, Martin Blüggel, Michael Hamacher, Lennart Martens, Gerhard Körting, Daniel C. Chamrad, David Parkinson, Rolf Apweiler, Helmut E. Meyer, Katrin Marcus
PROTEOMICS (2006) 6(18): 4997-5014
Comparative proteomics of high light stress in the model alga Chlamydomonas reinhardtii
Britta Förster, Ulrike Mathesius, Barry J. Pogson
PROTEOMICS (2006) 6(15): 4309-4320
Phyloproteomics: What Phylogenetic Analysis Reveals about Serum Proteomics
Mones Abu-Asab, Mohamed Chaouchi, and Hakima Amri
JOURNAL OF PROTEOME RESEARCH (2006) 5(9): 2236-2240
Mass Spectrometry Reveals Specific and Global Molecular Transformations during Viral Infection
Eden P. Go, William R. Wikoff, Zhouxin Shen, Grace O'Maille, Hirotoshi Morita, Thomas P. Conrads, Anders Nordstrom, Sunia A. Trauger, Wilasinee Uritboonthai, David A. Lucas, King C. Chan, Timothy D. Veenstra, Hanna Lewicki, Michael B. Oldstone, Anette Schneemann, and Gary Siuzdak
JOURNAL OF PROTEOME RESEARCH (2006) 5(9): 2405-2416
Elucidation of mechanisms of acid stress in Listeria monocytogenes by proteomic analysis
Phan-Thanh L, Jansch L.
Methods Biochem Anal (2006) 49: 75-88
Identification of Protein Networks Associated with the PAK1-PIX-GIT1-Paxillin Signaling Complex by Mass Spectrometry
Mark W. Mayhew, Donna J. Webb, Mykola Kovalenko, Leanna Whitmore, Jay W. Fox, and Alan F. Horwitz
JOURNAL OF PROTEOME RESEARCH (2006) 5(9): 2417-2423
Functional Proteomics Identifies Protein-tyrosine Phosphatase 1B as a Target of RhoA Signaling
Yukihito Kabuyama, Stephen J. Langer, Kirsi Polvinen, Yoshimi Homma, Katheryn A. Resing, and Natalie G. Ahn
Mol Cell Proteomics (2006) 5(8): 1359-1367
Characterization of The Drosophila melanogaster Ribosomal Proteome
Jana Alonso and Juan F. Santarén
JOURNAL OF PROTEOME RESEARCH (2006) 5(8): 2025-2032
Proteome Comparison Following Self- and Across-Pollination in Self-Incompatible Apricot (Prunus armeniaca L.)
Feng J, Chen X, Yuan Z, He T, Zhang L, Wu Y, Liu W, Liang Q.
Protein J Early Edition: published 1-Sep-2006
Age-related proteome analysis of the mouse brain: a 2-DE study
Odile Carrette, Pierre R. Burkhard, Denis F. Hochstrasser, Jean-Charles Sanchez
PROTEOMICS (2006) 6(18): 4940-4949
Proteomic studies of plant-pathogenic oomycetes and fungi
Bruce CR, Van West P, Grenville-Briggs LJ.
Methods Biochem Anal (2006) 49: 271-83
Proteomic and Computational Analysis of Secreted Proteins with Type I Signal Peptides from the Antarctic Archaeon Methanococcoides burtonii
Neil F. W. Saunders, Charmaine Ng, Mark Raftery, Michael Guilhaus, Amber Goodchild, and Ricardo Cavicchioli
JOURNAL OF PROTEOME RESEARCH (2006) 5(9): 2457-2464
Shotgun proteomics for the characterization of subunit composition of mitochondrial complex I
Pocsfalvi G, Cuccurullo M, Schlosser G, Cacace G, Siciliano RA, Mazzeo MF, Scacco S, Cocco T, Gnoni A, Malorni A, Papa S.
Biochim Biophys Acta Early Edition: published 3-Jun-2006
N-Terminal protein modifications in an insect cell-free protein synthesis system and their identification by mass spectrometry
Takashi Suzuki, Masaaki Ito, Toru Ezure, Masamitsu Shikata, Eiji Ando, Toshihiko Utsumi, Susumu Tsunasawa, Osamu Nishimura
PROTEOMICS (2006) 6(16): 4486-4495
Identification of blottin: A novel gastric trefoil factor family-2 binding protein
William R. Otto, Ketan Patel, Iain McKinnell, Marissa D. Evans, Chung-Yin Lee, David Frith, Sarah Hanrahan, Kenneth Blight, Nikolaus Blin, Tuncay Kayademir, Richard Poulsom, Rosemary Jeffery, Toby Hunt, Nicholas A. Wright, Fiona McGregor, Karin A. Oien
PROTEOMICS (2006) 6(15): 4235-4245
HUPO Brain Proteome Project: Summary of the pilot phase and introduction of a comprehensive data reprocessing strategy
Michael Hamacher, Rolf Apweiler, Georg Arnold, Albert Becker, Martin Blüggel, Odile Carrette, Christine Colvis, Michael J. Dunn, Thomas Fröhlich, Michael Fountoulakis, André van Hall, Friedrich Herberg, Juango Ji, Hans Kretzschmar, Piotr Lewczuk, Gert Lubec, Katrin Marcus, Lennart Martens, Nadine Palacios Bustamante, Young Mok Park, Stephen R. Pennington, Johan Robben, Kai Stühler, Kai A. Reidegeld, Peter Riederer, Jean Rossier, Jean-Charles Sanchez, Michael Schrader, Christian Stephan, Danilo Tagle, Herbert Thiele, Jing Wang, Jens Wiltfang, Jong Shin Yoo, Chenggang Zhang, Joachim Klose, Helmut E. Meyer
PROTEOMICS (2006) 6(18): 4890-4898
Identification and Herc5-mediated ISGylation of novel target proteins
Takeuchi T, Inoue S, Yokosawa H.
Biochem Biophys Res Commun Early Edition: published 28-Jul-2006
Starvation Induces Phase-Specific Changes in the Proteome of Mouse Small Intestine
Kaatje Lenaerts, Milka Sokolovi , Freek G. Bouwman, Wouter H. Lamers, Edwin C. Mariman, and Johan Renes
JOURNAL OF PROTEOME RESEARCH (2006) 5(9): 2113-2122
FPRL-1 induces modifications of migration-associated proteins in human neutrophils
Karsten Boldt, Wolfgang Rist, Stefanie M. Weiss, Andreas Weith, Martin C. Lenter
PROTEOMICS (2006) 6(17): 4790-4799
Proteomics of Plant Detergent-resistant Membranes
Johanne Morel, Stephane Claverol, Sebastien Mongrand, Fabienne Furt, Jerome Fromentin, Jean-Jacques Bessoule, Jean-Pierre Blein, and Francoise Simon-Plas
Mol Cell Proteomics (2006) 5(8): 1396-1411
Modifications of the Lipoamide-containing Mitochondrial Subproteome in a Yeast Mutant Defective in Cysteine Desulfurase
Ozlem Onder, Heeyong Yoon, Bianca Naumann, Michael Hippler, Andrew Dancis, and Fevzi Daldal
Mol Cell Proteomics (2006) 5(8): 1426-1436
Comparative proteomic analysis of metabolically labelled proteins from Plasmodium falciparum isolates with different adhesion properties.
Wu Y, Craig A.
Malar J (2006) 5(1): 67
The normal human amniotic fluid supernatant proteome.
Tsangaris GT, Kolialexi A, Karamessinis PM, Anagnostopoulos AK, Antsaklis A, Fountoulakis M, Mavrou A.
In Vivo (2006) 20(4): 479-90
Pilot study of the Human Proteome Organisation Brain Proteome Project: Applying different 2-DE techniques to monitor proteomic changes during murine brain development
Kai Stühler, Kathy Pfeiffer, Cornelia Joppich, Christian Stephan, Klaus Jung, Michael Müller, Oliver Schmidt, Andre van Hall, Michael Hamacher, Wolfgang Urfer, Helmut E. Meyer, Katrin Marcus
PROTEOMICS (2006) 6(18): 4899-4913
Characterization of the human urine proteome by preparative electrophoresis in combination with 2-DE
Panagiotis G. Zerefos, Konstantinos Vougas, Ploumisti Dimitraki, Sophia Kossida, Andreas Petrolekas, Konstantinos Stravodimos, Aris Giannopoulos, Michael Fountoulakis, Antonia Vlahou
PROTEOMICS (2006) 6(15): 4346-4355
Analysis of the HUPO Brain Proteome reference samples using 2-D DIGE and 2-D LC-MS/MS
Thomas Fröhlich, Derrick Helmstetter, Monica Zobawa, Anna C. Crecelius, Thomas Arzberger, Hans A. Kretzschmar, Georg J. Arnold
PROTEOMICS (2006) 6(18): 4950-4966
Adaptation of proteins to different environments: A comparison of proteome structural properties in Bacillus subtilis and Escherichia coli
Marashi SA, Behrouzi R, Pezeshk H.
J Theor Biol Early Edition: published 24-Jul-2006
High-throughput localization of organelle proteins by mass spectrometry: a quantum leap for cell biology
Tan DJ, Martinez Arias A.
Bioessays (2006) 28(8): 780-784
Profiling human brain proteome by multi-dimensional separations coupled with MS
Young Mok Park, Jin Young Kim, Kyung-Hoon Kwon, Sang Kwang Lee, Young Hye Kim, Se-Young Kim, Gun Wook Park, Jeong Hwa Lee, Bonghee Lee, Jong Shin Yoo
PROTEOMICS (2006) 6(18): 4978-4986
Proteomic Identification and Functional Characterization of a Novel ARF6 GTPase-activating Protein, ACAP4
Zhiyou Fang, Yong Miao, Xia Ding, Hui Deng, Siqi Liu, Fengsong Wang, Rihong Zhou, Charles Watson, Chuanhai Fu, Qicong Hu, James W. Lillard, Jr, Michael Powell, Yong Chen, John G. Forte, and Xuebiao Yao
Mol Cell Proteomics (2006) 5(8): 1437-1449
Statistical Analysis of Membrane Proteome Expression Changes in Saccharomyces cerevisiae
Boris Zybailov, Amber L. Mosley, Mihaela E. Sardiu, Michael K. Coleman, Laurence Florens, and Michael P. Washburn
JOURNAL OF PROTEOME RESEARCH (2006) 5(9): 2339-2347
Proteomic Analysis of Cerebrospinal Fluid Changes Related to Postmortem Interval.
Finehout EJ, Franck Z, Relkin N, Lee KH.
Clin Chem Early Edition: published 3-Aug-2006
Regulation of the Raf-MEK-ERK pathway by protein phosphatase 5
von Kriegsheim A, Pitt A, Grindlay GJ, Kolch W, Dhillon AS.
Nat Cell Biol Early Edition: published 6-Aug-2006
Automated reprocessing pipeline for searching heterogeneous mass spectrometric data of the HUPO Brain Proteome Project pilot phase
Christian Stephan, Kai A. Reidegeld, Michael Hamacher, André van Hall, Katrin Marcus, Chris Taylor, Philip Jones, Michael Müller, Rolf Apweiler, Lennart Martens, Gerhard Körting, Daniel C. Chamrad, Herbert Thiele, Martin Blüggel, David Parkinson, Pierre-Alain Binz, Andrew Lyall, Helmut E. Meyer
PROTEOMICS (2006) 6(18): 5015-5029
A proteomic approach to the identification of early molecular targets changed by L-ascorbic acid in NB4 human leukemia cells
Park S, Lee J, Yeom CH.
J Cell Biochem Early Edition: published 5-Jul-2006
Identification of Marker Proteins for the Adulteration of Meat Products with Soybean Proteins by Multidimensional Liquid Chromatography-Tandem Mass Spectrometry
Alexander Leitner, Florentina Castro-Rubio, Maria Luisa Marina, and Wolfgang Lindner
JOURNAL OF PROTEOME RESEARCH (2006) 5(9): 2424-2430
Proteomic and bioinformatic analysis of iron- and sulfur-oxidizing Acidithiobacillus ferrooxidans using immobilized pH gradients and mass spectrometry
Pavel Bouchal, Zbyn?k Zdráhal, ?árka Helánová, Old?ich Janiczek, Kevin B. Hallberg, Martin Mandl
PROTEOMICS (2006) 6(15): 4278-4285
Proteomic analysis of pulmonary sclerosing hemangioma
Lian-Jin Jin, Bong Kyung Shin, Woon Yong Jung, Hyun-Juu Lee, Su Jin Cho, Joung-Ho Han, Seong-Yeon Ha, Ae-Ree Kim, Young Sik Kim, In Sun Kim, Chang-Sub Uhm, Han Kyeom Kim
PROTEOMICS (2006) 6(17): 4877-4883
Venom Proteomes of Closely Related Sistrurus Rattlesnakes with Divergent Diets
Libia Sanz, H. Lisle Gibbs, Stephen P. Mackessy, and Juan J. Calvete
JOURNAL OF PROTEOME RESEARCH (2006) 5(9): 2098-2112
Comparison of bovine and porcine ?-lactoglobulin: a mass spectrometric analysis
Gaetano Invernizzi, Maria ?amalikova, Stefania Brocca, Marina Lotti, Henriette Molinari, Rita Grandori
Journal of Mass Spectrometry (2006) 41(6): 717-727
2-DE Proteomic Profiling of Neuronal Stem Cells
Hoffrogge R, Beyer S, Volker U, Uhrmacher AM, Rolfs A.
Neurodegener Dis (2006) 3(1-2): 112-21
Proteomics-based identification of autoantibodies in the sera of healthy Chinese individuals from Beijing
Wei-Hua Li, Jie Zhao, Hui-Yan Li, Hui Liu, Ai-Ling Li, Hong-Xia Wang, Jie Wang, Kun He, Bing Liang, Ming Yu, Bei-Fen Shen, Xue-Min Zhang
PROTEOMICS (2006) 6(17): 4781-4789
Proteomic Analysis of Root Meristems and the Effects of Acetohydroxyacid Synthase-Inhibiting Herbicides in the Root of Medicago Truncatula
Peta Holmes, Ryan Farquharson, Prudence J. Hall, and Barry G. Rolfe
JOURNAL OF PROTEOME RESEARCH (2006) 5(9): 2309-2316
Effects of Global System for Mobile Communications 1800 MHz radiofrequency electromagnetic fields on gene and protein expression in MCF-7 cells
Qunli Zeng, Guangdi Chen, Yu Weng, Lingli Wang, Huai Chiang, Deqiang Lu, Zhengping Xu
PROTEOMICS (2006) 6(17): 4732-4738
Proteomic analysis of human neutrophils
Lominadze G, Ward RA, Klein JB, McLeish KR.
Methods Mol Biol (2006) 332: 343-56
Identification of the proteins present in the bull sperm cytosolic fraction enriched in tyrosine kinase activity: A proteomic approach
Claudia Lalancette, Robert L. Faure, Pierre Leclerc
PROTEOMICS (2006) 6(16): 4523-4540
Comprehensive Proteomic Analysis of Shigella flexneri 2a Membrane Proteins
Candong Wei, Jian Yang, Junping Zhu, Xiaobing Zhang, Wenchuan Leng, Jing Wang, Ying Xue, Lilian Sun, Weijun Li, Jin Wang, and Qi Jin
JOURNAL OF PROTEOME RESEARCH (2006) 5(8): 1860-1865
Comigration of two autophagosome-associated dehydrogenases on two-dimensional polyacrylamide gels
Sneve ML, Overbye A, Fengsrud M, Seglen PO.
Autophagy (2005) 1(3): 157-62
Clinically relevant oral cancer model for serum proteomic eavesdropping on the tumour microenvironment
Balys R, Alaoui-Jamali M, Hier M, Black M, Domanowski G, Rochon L, Jie S.
J Otolaryngol (2006) 35(3): 157-66
Proteome alterations in human host cells infected with coxsackievirus B3.
Rassmann A, Henke A, Zobawa M, Carlsohn M, Saluz HP, Grabley S, Lottspeich F, Munder T.
J Gen Virol (2006) 87(Pt 9): 2631-8
Gel-free analysis of the human brain proteome: Application of liquid chromatography and mass spectrometry on biopsy and autopsy samples
Debora Dumont, Jean-Paul Noben, Peter Verhaert, Piet Stinissen, Johan Robben
PROTEOMICS (2006) 6(18): 4967-4977
Examination of 2-DE in the Human Proteome Organisation Brain Proteome Project pilot studies with the new RAIN gel matching technique
Andrew W. Dowsey, Jane English, Kyla Pennington, David Cotter, Kai Stuehler, Katrin Marcus, Helmut E. Meyer, Michael J. Dunn, Guang-Zhong Yang
PROTEOMICS (2006) 6(18): 5030-5047
Proteome analysis of the dystrophin-deficient MDX diaphragm reveals a drastic increase in the heat shock protein cvHSP
Philip Doran, Geraldine Martin, Paul Dowling, Harald Jockusch, Kay Ohlendieck
PROTEOMICS (2006) 6(16): 4610-4621
Proteomic analysis of fast and slow muscles from normal and kyphoscoliotic mice using protein arrays, 2-DE and MS
Marie-Catherine Le Bihan, Yanwen Hou, Nathan Harris, Edward Tarelli, Gary R. Coulton
PROTEOMICS (2006) 6(16): 4646-4661
Identification of a tyrosine-phosphorylated CCCTC-binding nuclear factor in capacitated mouse spermatozoa
Jyh-Bing Tang, Yee-Hsiung Chen
PROTEOMICS (2006) 6(17): 4800-4807
2-D DIGE as a quantitative tool for investigating the HUPO Brain Proteome Project mouse series
Melanie Föcking, Paul J. Boersema, Niaobh O'Donoghue, Gert Lubec, Stephen R. Pennington, David R. Cotter, Michael J. Dunn
PROTEOMICS (2006) 6(18): 4914-4931
Spatial segregation of transport and signalling functions between human endothelial caveolae and lipid raft proteomes
Sprenger RR, Fontijn RD, van Marle J, Pannekoek H, Horrevoets AJ.
Biochem J Early Edition: published 4-Aug-2006
Novel approaches to analyse glomerular proteins from smallest scale murine and human samples using DIGE saturation labelling
Barbara Sitek, Sebastian Potthoff, Thomas Schulenborg, Johannes Stegbauer, Tobias Vinke, Lars-Christian Rump, Helmut E. Meyer, Oliver Vonend, Kai Stühler
PROTEOMICS (2006) 6(15): 4337-4345
Proteomic analysis of Salmonella enterica serovar Typhimurium isolated from RAW 264.7 macrophages: Identification of a novel protein that contributes to the replication of serovar Typhimurium inside macrophages
Shi L, Adkins JN, Coleman JR, Schepmoes AA, Dohnkova A, Mottaz HM, Norbeck AD, Purvine SO, Manes NP, Smallwood HS, Wang H, Forbes J, Gros P, Uzzau S, Rodland KD, Heffron F, Smith RD, Squier TC.
J Biol Chem Early Edition: published 7-Aug-2006
Proteomic analysis of the autoantibody response following immunization with a single autoantigen
Hugo Mouquet, Laurent Drouot, Roland Charlionnet, Christophe Arnoult, Florence Bonnet-Bayeux, Marlène Thomas, Jérôme Leprince, Pascal Joly, François Tron, Danièle Gilbert
PROTEOMICS (2006) 6(17): 4829-4837
Proteomic response of Schizosaccharomyces pombe to static and oscillating extremely low-frequency electromagnetic fields
John Sinclair, Mark Weeks, Amna Butt, Jessica L. Worthington, Akunna Akpan, Nic Jones, Mike Waterfield, Donald Allanand, John F. Timms
PROTEOMICS (2006) 6(17): 4755-4764
A proteomic view of Desulfovibrio vulgaris metabolism as determined by liquid chromatography coupled with tandem mass spectrometry
Weiwen Zhang, Marina A. Gritsenko, Ronald J. Moore, David E. Culley, Lei Nie, Konstantinos Petritis, Eric F. Strittmatter, David G. Camp II, Richard D. Smith, Fred J. Brockman
PROTEOMICS (2006) 6(15): 4286-4299
The chloroplast lumen and stromal proteomes of Arabidopsis thaliana show differential sensitivity to short- and long-term exposure to low temperature
Goulas E, Schubert M, Kieselbach T, Kleczkowski LA, Gardestrom P, Schroder W, Hurry V.
Plant J (2006) 47(5): 720-34
Mutations in DMI3 and SUNN modify the appressorium-responsive root proteome in arbuscular mycorrhiza
Amiour N, Recorbet G, Robert F, Gianinazzi S, Dumas-Gaudot E.
Mol Plant Microbe Interact (2006) 19(9): 988-97
Proteomic analysis and comparison of the biopsy and autopsy specimen of human brain temporal lobe
Sizhi He, Qingsong Wang, Jintang He, Hai Pu, Wei Yang, Jianguo Ji
PROTEOMICS (2006) 6(18): 4987-4996
Proteomic Analysis of the Kaposi's Sarcoma-Associated Herpesvirus Terminal Repeat Element Binding Proteins
Si H, Verma SC, Robertson ES.
J Virol (2006) 80(18): 9017-30
Sperm chromatin proteomics identifies evolutionarily conserved fertility factors
Chu DS, Liu H, Nix P, Wu TF, Ralston EJ, Yates Iii JR, Meyer BJ.
Nature Early Edition: published 30-Aug-2006
Proteomic analysis of caco-2 cells treated with monacolin k
Lin WY, Song CY, Pan TM.
J Agric Food Chem (2006) 54(17): 6192-200
Questions and answers concerning applicability of proteomics and transcriptomics in EMF research
Dariusz Leszczynski, Martin L. Meltz
PROTEOMICS (2006) 6(17): 4674-4677
A proteomic analysis of protein variations during differentiation of v-myb-transformed monoblasts
Ondrouskova E, Povolna K, Vana P, Benes P, Konecna H, Zdrahal Z, Smarda J.
Leuk Res Early Edition: published 21-Aug-2006
Functional annotation of proteins identified in human brain during the HUPO Brain Proteome Project pilot study
Michael Mueller, Lennart Martens, Kai A. Reidegeld, Michael Hamacher, Christian Stephan, Martin Blüggel, Gerhard Körting, Daniel Chamrad, Christian Scheer, Katrin Marcus, Helmut E. Meyer, Rolf Apweiler
PROTEOMICS (2006) 6(18): 5059-5075
Plasticity demonstrated in the proteome of a parasitic nematode within the intestine of different host strains
Charly Morgan, Elwyn James LaCourse, Benjamin J. Rushbrook, Darren Greetham, Joanne V. Hamilton, John Barrett, Kevin Bailey, Peter M. Brophy
PROTEOMICS (2006) 6(16): 4633-4645
Rapid Alteration of the Phosphoproteome in the Moss Physcomitrella patens after Cytokinin Treatment
Dimitri Heintz, Anika Erxleben, Anthony A. High, Virginie Wurtz, Ralf Reski, Alain Van Dorsselaer, and Eric Sarnighausen
JOURNAL OF PROTEOME RESEARCH (2006) 5(9): 2283-2293
Environmentally Modulated Phosphoproteome of Photosynthetic Membranes in the Green Alga Chlamydomonas reinhardtii
Maria V. Turkina, Joanna Kargul, Amaya Blanco-Rivero, Arsenio Villarejo, James Barber, and Alexander V. Vener
Mol Cell Proteomics (2006) 5(8): 1412-1425
Identification of differentially regulated proteins in response to a compatible interaction between the pathogen Fusarium graminearum and its host, Triticum aestivum
Wenchun Zhou, François Eudes, André Laroche
PROTEOMICS (2006) 6(16): 4599-4609
Applying the SAGE technique to study the effects of electromagnetic field on biological systems
San Ming Wang
PROTEOMICS (2006) 6(17): 4765-4768
OmpW and OmpV Are Required for NaCl Regulation in Photobacterium damsela
Lina Wu, Xiangmin Lin, Fengping Wang, Dezan Ye, Xiang Xiao, Sanying Wang, and Xuanxian Peng
JOURNAL OF PROTEOME RESEARCH (2006) 5(9): 2250-2257
Investigating the Dynamic Nature of the Interactions between Nuclear Proteins and Histones upon DNA Damage Using an Immobilized Peptide Chemical Proteomics Approach
Eef H. C. Dirksen, Martijn W. H. Pinkse, Dirk T. S. Rijkers, Jacqueline Cloos, Rob M. J. Liskamp, Monique Slijper, and Albert J. R. Heck
JOURNAL OF PROTEOME RESEARCH (2006) 5(9): 2380-2388
NMR Metabolic Profiling of Aspergillus nidulans to Monitor Drug and Protein Activity
Paxton Forgue, Steven Halouska, Mark Werth, Kaimei Xu, Steve Harris, and Robert Powers
JOURNAL OF PROTEOME RESEARCH (2006) 5(8): 1916-1923
Identification of G2/M targets for the MAP kinase pathway by functional proteomics
Elisabeth C. Roberts, Kasey Hammond, Abdulmaged M. Traish, Katheryn A. Resing, Natalie G. Ahn
PROTEOMICS (2006) 6(16): 4541-4553
A Quantitative Analysis of Arabidopsis Plasma Membrane Using Trypsin-catalyzed 18O Labeling
Clark J. Nelson, Adrian D. Hegeman, Amy C. Harms, and Michael R. Sussman
Mol Cell Proteomics (2006) 5(8): 1382-1395
Prevalent Structural Disorder in E. coli and S. cerevisiae Proteomes
Peter Tompa, Zsuzsanna Doszt nyi, and Istv n Simon
JOURNAL OF PROTEOME RESEARCH (2006) 5(8): 1996-2000
Proteomic Analysis of Human Whole and Parotid Salivas Following Stimulation by Different Tastes
Eric Neyraud, Thierry Sayd, Martine Morzel, and Eric Dransfield
JOURNAL OF PROTEOME RESEARCH (2006) 5(9): 2474-2480
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Editorial: Mass spectrometry for the study and diagnosis of human disease
Toshimitsu Niwa
Mass Spectrometry Reviews (2006) 25(5): 685
Diagnosis of early relapse in ovarian cancer using serum proteomic profiling.
Oh JH, Gao J, Nandi A, Gurnani P, Knowles L, Schorge J.
Genome Inform (2005) 16(2): 195-204
Technology Insight: renal proteomics-at the crossroads between promise and problems
O'riordan E, Gross SS, Goligorsky MS.
Nat Clin Pract Nephrol (2006) 2(8): 445-458
Apoptotic cell thrombospondin-1 and heparin binding domain lead to dendritic cell phagocytic and tolerizing states
Krispin A, Bledi Y, Atallah M, Trahtemberg U, Verbovetski I, Nahari E, Zelig O, Linial M, Mevorach D.
Blood Early Edition: published 1-Aug-2006
Proteins Associated with Disease and Clinical Course in Pancreas Cancer: A Proteomic Analysis of Plasma in Surgical Patients
Yiing Lin, Peter S. Goedegebuure, Marcus C. B. Tan, Julia Gross, James P. Malone, Sheng Feng, Justin Larson, Chanpheng Phommaly, Kathryn Trinkaus, R. Reid Townsend, and David C. Linehan
JOURNAL OF PROTEOME RESEARCH (2006) 5(9): 2169-2176
Predicting cancer drug response by proteomic profiling.
Ma Y, Ding Z, Qian Y, Shi X, Castranova V, Harner EJ, Guo L.
Clin Cancer Res (2006) 12(15): 4583-9
Identification of over-expressed proteins in oral squamous cell carcinoma (OSCC) patients by clinical proteomic analysis.
Lo WY, Tsai MH, Tsai Y, Hua CH, Tsai FJ, Huang SY, Tsai CH, Lai CC.
Clin Chim Acta Early Edition: published 30-Jun-2006
Searching cell-secreted proteomes for potential urinary bladder tumor markers
Chiao-Yun Lin, Ke-Hung Tsui, Chih-Chia Yu, Chun-Wei Yeh, Phei-Lang Chang, Benjamin Yat-Ming Yung
PROTEOMICS (2006) 6(15): 4381-4389
High-Sensitivity Blood-Based Detection of Breast Cancer by Multi Photon Detection Diagnostic Proteomics
Andrzej K. Drukier, Nathasha Ossetrova, Elena Schors, Galya Krasik, Ivan Grigoriev, Christina Koenig, Miko Sulkowski, Jerzy Holcman, Larry R. Brown, John E. Tomaszewski, Mitchell D. Schnall, Richard Sainsbury, Anne E. Lokshin, and Jasminka Godovac-Zimmermann
JOURNAL OF PROTEOME RESEARCH (2006) 5(8): 1906-1915
Mass Spectrometry-Based Proteomics and its Application to Studies of Porphyromonas gingivalis Invasion and Pathogenicity
Lamont RJ, Meila M, Xia Q, Hackett M.
Infect Disord Drug Targets (2006) 6(3): 311-25
Identification and Functional Validation of Novel Autoantigens in Equine Uveitis
Cornelia A. Deeg, Dirk Pompetzki, Albert J. Raith, Stefanie M. Hauck, Barbara Amann, Sabine Suppmann, Thomas W. F. Goebel, Ursula Olazabal, Hartmut Gerhards, Sven Reese, Manfred Stangassinger, Bernd Kaspers, and Marius Ueffing
Mol Cell Proteomics (2006) 5(8): 1462-1470
Identification of differentially expressed proteins in human malignant pleural effusions.
Hsieh WY, Chen MW, Ho HT, You TM, Lu YT.
Eur Respir J Early Edition: published 9-Aug-2006
Discovery of proteins related to coronary artery disease using industrial-scale proteomics analysis of pooled plasma
Donahue MP, Rose K, Hochstrasser D, Vonderscher J, Grass P, Chibout SD, Nelson CL, Sinnaeve P, Goldschmidt P, Granger CB.
Am Heart J (2006) 152(3): 478-85
Characterization of plasma proteome in biliary atresia
Lee CW, Lin MY, Lee WC, Chou MH, Hsieh CS, Lee SY, Chuang JH.
Clin Chim Acta Early Edition: published 21-Jun-2006
Identification and preliminary validation of novel biomarkers of acute hepatic ischaemia/reperfusion injury using dual-platform proteomic/degradomic approaches
Svetlov SI, Xiang Y, Oli MW, Foley DP, Huang G, Hayes RL, Ottens AK, Wang KK.
Biomarkers (2006) 11(4): 355-69
Proteomic analysis of amniotic fluid in pregnancies with Down syndrome
George Th. Tsangaris, Panagiotis Karamessinis, Aggeliki Kolialexi, Spiros D. Garbis, Aris Antsaklis, Ariadni Mavrou, Michael Fountoulakis
PROTEOMICS (2006) 6(15): 4410-4419
Peptidomics for Cancer Diagnosis: Present and Future
Eleftherios P. Diamandis
JOURNAL OF PROTEOME RESEARCH (2006) 5(9): 2079-2082
Proteomic Analysis of Inclusion Body Myositis
Li J, Yin C, Okamoto H, Jaffe H, Oldfield EH, Zhuang Z, Vortmeyer AO, Rushing EJ.
J Neuropathol Exp Neurol (2006) 65(8): 826-833
On the discovery of the genetic association of Apolipoprotein E genotypes and common late-onset Alzheimer disease
Roses AD.
J Alzheimers Dis (2006) 9(3 Suppl): 361-6
Kinase domain mutants of bcr-abl exhibit altered transformation potency, kinase activity, and substrate utilization, irrespective of sensitivity to imatinib
Griswold IJ, Macpartlin M, Bumm T, Goss VL, O'hare T, Lee KA, Corbin AS, Stoffregen EP, Smith C, Johnson K, Moseson EM, Wood LJ, Polakiewicz RD, Druker BJ, Deininger MW.
Mol Cell Biol (2006) 26(16): 6082-93
Novel Application of ProteinChip Technology Exploring Acute Rejection Markers of Rat Small Bowel Transplantation
Yamayoshi Y, Watanabe T, Tanabe M, Hoshino K, Matsumoto K, Morikawa Y, Shimadzu M, Kitajima M, Tanigawara Y.
Transplantation (2006) 82(3): 320-6
Comparative Immunoproteomics of Identification and Characterization of Virulence Factors from Helicobacter pylori Related to Gastric Cancer
Yu-Fen Lin, Ming-Shiang Wu, Chia-Che Chang, Sheng-Wei Lin, Jaw-Town Lin, Yuh-Ju Sun, Ding-Shinn Chen, and Lu-Ping Chow
Mol Cell Proteomics (2006) 5(8): 1484-1496
Proteomic signatures corresponding to histological classification and grading of soft-tissue sarcomas
Yoshiyuki Suehara, Tadashi Kondo, Kiyonaga Fujii, Tadashi Hasegawa, Akira Kawai, Kunihiko Seki, Yasuo Beppu, Toshihide Nishimura, Hisashi Kurosawa, Setsuo Hirohashi
PROTEOMICS (2006) 6(15): 4402-4409
A targeted proteomic approach for the identification of tumor-associated membrane antigens using the ProteomeLab(trade mark) PF-2D in tandem with mass spectrometry
Chahal FC, Entwistle J, Glover N, Macdonald GC.
Biochem Biophys Res Commun Early Edition: published 7-Aug-2006
Gene expression changes in human cells after exposure to mobile phone microwaves
Daniel Remondini, Reetta Nylund, Jukka Reivinen, Florence Poulletier de Gannes, Bernard Veyret, Isabelle Lagroye, Emmanuelle Haro, M. Angeles Trillo, Miriam Capri, Claudio Franceschi, Kathrin Schlatterer, Richard Gminski, Rudolf Fitzner, Rudolf Tauber, Jurgen Schuderer, Niels Kuster, Dariusz Leszczynski, Ferdinando Bersani, Christian Maercker
PROTEOMICS (2006) 6(17): 4745-4754
Comparative analysis of serum proteomes: discovery of proteins associated with osteonecrosis of the femoral head
Tan X, Cai D, Wu Y, Liu B, Rong L, Chen Z, Zhao Q.
Transl Res (2006) 148(3): 114-9
Correlation of protein expression, Gleason score and DNA ploidy in prostate cancer
Helena Lexander, Carina Palmberg, Ulf Hellman, Gert Auer, Magnus Hellström, Bo Franzén, Hans Jörnvall, Lars Egevad
PROTEOMICS (2006) 6(15): 4370-4380
Proteomic Profiling in Musculoskeletal Oncology by MALDI Mass Spectrometry
Holt GE, Schwartz HS, Caldwell RL.
Clin Orthop Relat Res Early Edition: published 20-Jul-2006
Protein Intrinsic Disorder and Human Papillomaviruses: Increased Amount of Disorder in E6 and E7 Oncoproteins from High Risk HPVs
Vladimir N. Uversky, Ann Roman, Christopher J. Oldfield, and A. Keith Dunker
JOURNAL OF PROTEOME RESEARCH (2006) 5(8): 1829-1842
Protein Expression Profiling Identifies Cyclophilin A as a Molecular Target in Fhit-Mediated Tumor Suppression
Semba S, Huebner K.
Mol Cancer Res Early Edition: published 2-Aug-2006
Proteomic Analysis of Amniotic Membrane Prepared for Human Transplantation: Characterization of Proteins and Clinical Implications
Andrew Hopkinson, Richard S. McIntosh, Vijay Shanmuganathan, Patrick J. Tighe, and Harminder S. Dua
JOURNAL OF PROTEOME RESEARCH (2006) 5(9): 2226-2235
Proteomics-based identification of secreted protein dihydrodiol dehydrogenase as a novel serum markers of non-small cell lung cancer
Huang LJ, Chen SX, Huang Y, Luo WJ, Jiang HH, Hu QH, Zhang PF, Yi H.
Lung Cancer Early Edition: published 28-Jul-2006
Detection of biomarkers with a multiplex quantitative proteomic platform in cerebrospinal fluid of patients with neurodegenerative disorders
Abdi F, Quinn JF, Jankovic J, McIntosh M, Leverenz JB, Peskind E, Nixon R, Nutt J, Chung K, Zabetian C, Samii A, Lin M, Hattan S, Pan C, Wang Y, Jin J, Zhu D, Li GJ, Liu Y, Waichunas D, Montine TJ, Zhang J.
J Alzheimers Dis (2006) 9(3): 293-348
Proteomic profiling of cholangiocarcinoma: Diagnostic potential of SELDI-TOF MS in malignant bile duct stricture
Scarlett CJ, Saxby AJ, Nielsen A, Bell C, Samra JS, Hugh T, Baxter RC, Smith RC.
Hepatology (2006) 44(3): 658-666
Direct Molecular Analysis of Whole-Body Animal Tissue Sections by Imaging MALDI Mass Spectrometry
Sheerin Khatib-Shahidi, Malin Andersson, Jennifer L. Herman, Todd A. Gillespie, and Richard M. Caprioli
ANALYTICAL CHEMISTRY (2006) 78(18): 6448-6456
Proteomics-based Validation of Genomic Data: Applications in Colorectal Cancer Diagnosis
Juan Madoz-Gurpide, Paula Lopez-Serra, Jorge Luis Martinez-Torrecuadrada, Lydia Sanchez, Luis Lombardia, and J. Ignacio Casal
Mol Cell Proteomics (2006) 5(8): 1471-1483
Discovery and Identification of Potential Biomarkers in a Prospective Study of Chronic Lymphoid Malignancies Using SELDI-TOF-MS
Laurent Miguet, Ralf Bogumil, Philippe Decloquement, Raoul Herbrecht, Noelle Potier, Laurent Mauvieux, and Alain Van Dorsselaer
JOURNAL OF PROTEOME RESEARCH (2006) 5(9): 2258-2269
2-DE Proteomic Profiling of Neuronal Stem Cells
Hoffrogge R, Beyer S, Volker U, Uhrmacher AM, Rolfs A.
Neurodegener Dis (2006) 3(1-2): 112-21
Proteomic Analysis of Serum, Outflow Dialysate and Adsorbed Protein onto Dialysis Membranes (Polysulfone and PMMA) during Hemodialysis Treatment Using SELDI-TOF-MS
Ishikawa I, Chikazawa Y, Sato K, Nakagawa M, Imamura H, Hayama S, Yamaya H, Asaka M, Tomosugi N, Yokoyama H, Matsumoto K.
Am J Nephrol (2006) 26(4): 372-380
Gel-Based Hippocampal Proteomic Analysis 2 Weeks following Traumatic Brain Injury to Immature Rats Using Controlled Cortical Impact
Kochanek AR, Kline AE, Gao WM, Chadha M, Lai Y, Clark RS, Dixon CE, Jenkins LW.
Dev Neurosci (2006) 28(4-5): 410-9
Proteomic Study of Plasma from Moderate Hypercholesterolemic Patients
Sergio Alonso-Orgaz, Laura Moreno, Carlos Macaya, Luis Rico, Petra J. Mateos-C ceres, Daniel Sacrist n, Francisco Pérez-Vizcaíno, Antonio Segura, Juan Tamargo, and Antonio López-Farré
JOURNAL OF PROTEOME RESEARCH (2006) 5(9): 2301-2308
Tissue detection of biomolecular predictors in breast cancer
Nassiri M, Nadji M.
Expert Rev Anticancer Ther (2006) 6(8): 1225-32
Mobile phone radiation causes changes in gene and protein expression in human endothelial cell lines and the response seems to be genome- and proteome-dependent
Reetta Nylund, Dariusz Leszczynski
PROTEOMICS (2006) 6(17): 4769-4780
Mass Spectrometry-Based Study of the Plasma Proteome in a Mouse Intestinal Tumor Model
Kenneth E. Hung, Alvin T. Kho, David Sarracino, Larissa Georgeon Richard, Bryan Krastins, Sara Forrester, Brian B. Haab, Isaac S. Kohane, and Raju Kucherlapati
JOURNAL OF PROTEOME RESEARCH (2006) 5(8): 1866-1878
Identification of Early Proteomic Markers for Hepatic Steatosis
Meneses-Lorente G, Watt A, Salim K, Gaskell SJ, Muniappa N, Lawrence J, Guest PC.
Chem Res Toxicol (2006) 19(8): 986-998
Comparative proteomics of apoptosis initiation induced by 5-fluorouracil in human gastric cancer.
Chen CY, Jia JH, Zhang MX, Zhou YB, Zhang RM, Yu XP.
Chin J Physiol (2006) 49(1): 31-8
Delving deep into the parasite proteome
Cottingham K.
Anal Chem (2006) 78(15): 5277
Identification and Confirmation of Increased Fibrinopeptide A Serum Protein Levels in Gastric Cancer Sera by Magnet Bead Assisted MALDI-TOF Mass Spectrometry
Matthias P. A. Ebert, Dagmar Niemeyer, Sören O. Deininger, Thomas Wex, Claudia Knippig, Juliane Hoffmann, Jörg Sauer, Wolfgang Albrecht, Peter Malfertheiner, and Christoph Röcken
JOURNAL OF PROTEOME RESEARCH (2006) 5(9): 2152-2158
Proteomic Analysis of Hypoxia/Ischemia-Induced Alteration of Cortical Development and Dopamine Neurotransmission in Neonatal Rat
Xiaoming Hu, Harriett C. Rea, John E. Wiktorowicz, and J. Regino Perez-Polo
JOURNAL OF PROTEOME RESEARCH (2006) 5(9): 2396-2404
Proteomic analysis of secreted proteins in early rheumatoid arthritis: Anti-citrulline reactivity is associated with upregulation of proinflammatory cytokines.
Hueber W, Tomooka BH, Zhao X, Kidd BA, Drijfhout JW, Fries JF, Van Venrooij WJ, Metzger AL, Genovese MC, Robinson WH.
Ann Rheum Dis Early Edition: published 10-Aug-2006
Focused Proteomics in Post-Mortem Human Spinal Cord
Titti Ekegren, Jörg Hanrieder, Sten-Magnus Aquilonius, and Jonas Bergquist
JOURNAL OF PROTEOME RESEARCH (2006) 5(9): 2364-2371
Abnormal changes of plasma acute phase proteins in schizophrenia and the relation between schizophrenia and haptoglobin (Hp) gene.
Wan C, La Y, Zhu H, Yang Y, Jiang L, Chen Y, Feng G, Li H, Sang H, Hao X, Zhang G, He L.
Amino Acids Early Edition: published 10-Aug-2006
1,2-propanediol and the type of cryopreservation procedure adversely affect mouse oocyte physiology
Larman MG, Katz-Jaffe MG, Sheehan CB, Gardner DK.
Hum Reprod Early Edition: published 12-Aug-2006
Proteomic patterns for cancer diagnosis-promise and challenges.
Whiteley GR.
Mol Biosyst (2006) 2(8): 358-63
CD70 (TNFSF7) is expressed at high prevalence in renal cell carcinomas and is rapidly internalised on antibody binding
Adam PJ, Terrett JA, Steers G, Stockwin L, Loader JA, Fletcher GC, Lu LS, Leach BI, Mason S, Stamps AC, Boyd RS, Pezzella F, Gatter KC, Harris AL.
Br J Cancer (2006) 95(3): 298-306
Effects of the incubation in vitro with sorbents on serum proteomic pattern and cytokine concentration in cancer patients during chemotherapy-preliminary results
Piccolomini F, Louwratten M, Sereni L, Balestreri E, Donadio E, Felicioli A, Felicioli R, Donadio C.
Biomed Pharmacother Early Edition: published 14-Aug-2006
Comparative Proteomics in Neurodegenerative and Non-neurodegenerative Diseases Suggest Nodal Point Proteins in Regulatory Networking
Claus Zabel, Dijana Sagi, Angela M. Kaindl, Nicole Steireif, Yvonne Kläre, Lei Mao, Hartmut Peters, Maik A. Wacker, Ralf Kleene, and Joachim Klose
JOURNAL OF PROTEOME RESEARCH (2006) 5(8): 1948-1958
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The human urinary proteome contains more than 1500 proteins, including a large proportion of membrane proteins
Adachi J, Kumar C, Zhang Y, Olsen J, Mann M
Genome Biology (2006) 7(9): R80
The Tissue Heterogeneity of the Mammalian Mitochondrial Proteome
Johnson DT, Harris RA, French S, Blair PV, You J, Bemis K, Wang M, Balaban RS.
Am J Physiol Cell Physiol Early Edition: published 23-Aug-2006
Annotation of novel neuropeptide precursors in the migratory locust based on transcript screening of a public EST database and mass spectrometry.
Clynen E, Huybrechts J, Verleyen P, De Loof A, Schoofs L.
BMC Genomics (2006) 7(1): 201
Proteomic approaches to dissect platelet function: one-half of the story
Gnatenko DV, Perrotta PL, Bahou WF.
Blood Early Edition: published 22-Aug-2006
Urinary proteomics
Gonzalez-Buitrago JM, Ferreira L, Lorenzo I.
Clin Chim Acta Early Edition: published 1-Aug-2006
Proteomic Analysis of the Adaptive Response of Rat Renal Proximal Tubules to Metabolic Acidosis.
Curthoys NP, Taylor L, Hoffert JD, Knepper MA.
Am J Physiol Renal Physiol Early Edition: published 8-Aug-2006
Proteome Analysis of Vernix Caseosa
Tollin M, Jagerbrink T, Haraldsson A, Agerberth B, Jornvall H.
Pediatr Res Early Edition: published 28-Aug-2006
The chloroplast lumen and stromal proteomes of Arabidopsis thaliana show differential sensitivity to short- and long-term exposure to low temperature
Goulas E, Schubert M, Kieselbach T, Kleczkowski LA, Gardestrom P, Schroder W, Hurry V.
Plant J (2006) 47(5): 720-34
Proteomic analysis of rat hippocampal plasma membrane: characterization of potential neuronal-specific plasma membrane proteins.
Chen P, Li X, Sun Y, Liu Z, Cao R, He Q, Wang M, Xiong J, Xie J, Wang X, Liang S.
J Neurochem (2006) 98(4): 1126-40
Aberrantly regulated proteins in frontotemporal dementia.
Schweitzer K, Decker E, Zhu L, Miller RE, Mirra SS, Spina S, Ghetti B, Wang M, Murrell J.
Biochem Biophys Res Commun Early Edition: published 28-Jul-2006
Proteomic Analysis of Cerebrospinal Fluid Changes Related to Postmortem Interval.
Finehout EJ, Franck Z, Relkin N, Lee KH.
Clin Chem Early Edition: published 3-Aug-2006
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Elucidation of mechanisms of acid stress in Listeria monocytogenes by proteomic analysis
Phan-Thanh L, Jansch L.
Methods Biochem Anal (2006) 49: 75-88
Contributions of proteomics to diagnosis, treatment, and prevention of candidiasis
Pitarch A, Nombela C, Gil C.
Methods Biochem Anal (2006) 49: 331-61
Unraveling Edwardsiella tarda pathogenesis using the proteomics approach
Rao PS, Tan YP, Zheng J, Leung KY.
Methods Biochem Anal (2006) 49: 237-44
Characterization of outer membrane vesicles released by the psychrotolerant bacterium Pseudoalteromonas antarctica NF
Nevot M, Deroncele V, Messner P, Guinea J, Mercade E.
Environ Microbiol (2006) 8(9): 1523-33
Proteomic analysis of Escherichia coli biofilms reveals the overexpression of the outer membrane protein OmpA
Rowan Orme, C. W. Ian Douglas, Stephen Rimmer, Michelle Webb
PROTEOMICS (2006) 6(15): 4269-4277
Holistic biology of microorganisms: genomics, transcriptomics, and proteomics
Wasinger V.
Methods Biochem Anal (2006) 49: 3-14
Candida albicans biology and pathogenicity: insights from proteomics
Pitarch A, Nombela C, Gil C.
Methods Biochem Anal (2006) 49: 285-330
Multivariate Approach to Comparing Whole-Cell Proteomes of Bacillus cereus Indicates a Biofilm-Specific Proteome
Sébastien Vilain and Volker S. Brözel
JOURNAL OF PROTEOME RESEARCH (2006) 5(8): 1924-1930
Research Profile: A unique biofilm proteome
Katie Cottingham
JOURNAL OF PROTEOME RESEARCH (2006) 5(8): 1824
Mass Spectrometry-Based Proteomics and its Application to Studies of Porphyromonas gingivalis Invasion and Pathogenicity
Lamont RJ, Meila M, Xia Q, Hackett M.
Infect Disord Drug Targets (2006) 6(3): 311-25
AMT tag approach to proteomic characterization of Deinococcus radiodurans and Shewanella oneidensis
Lipton MS, Romine MF, Monroe ME, Elias DA, Pasa-Tolic L, Anderson GA, Anderson DJ, Fredrickson J, Hixson KK, Masselon C, Mottaz H, Tolic N, Smith RD.
Methods Biochem Anal (2006) 49: 113-34
Analysis of the Salmonella typhimurium Proteome through Environmental Response toward Infectious Conditions
Joshua N. Adkins, Heather M. Mottaz, Angela D. Norbeck, Jean K. Gustin, Joanne Rue, Therese R. W. Clauss, Samuel O. Purvine, Karin D. Rodland, Fred Heffron, and Richard D. Smith
Mol Cell Proteomics (2006) 5(8): 1450-1461
Analyzing bacterial pathogenesis at level of proteome
Cash P.
Methods Biochem Anal (2006) 49: 211-35
Comparative proteomic analysis of Staphylococcus aureus strains with differences in resistance to the cell wall-targeting antibiotic vancomycin
Rembert Pieper, Christine L. Gatlin-Bunai, Emmanuel F. Mongodin, Prashanth P. Parmar, Shih-Ting Huang, David J. Clark, Robert D. Fleischmann, Steven R. Gill, Scott N. Peterson
PROTEOMICS (2006) 6(15): 4246-4258
Transcription and mass-spectroscopic proteomic studies of electron transport oxidoreductases in Dehalococcoides ethenogenes
Morris RM, Sowell S, Barofsky D, Zinder S, Richardson R.
Environ Microbiol (2006) 8(9): 1499-509
Protein extraction from Mycobacterium avium subsp. paratuberculosis: Comparison of methods for analysis by sodium dodecyl sulphate polyacrylamide gel electrophoresis, native PAGE and surface enhanced laser desorption/ionization time of flight mass spectrometry
Gumber S, Taylor DL, Whittington RJ.
J Microbiol Methods Early Edition: published 15-Aug-2006
Application of the Accurate Mass and Time Tag Approach to the Proteome Analysis of Sub-cellular Fractions Obtained from Rhodobacter sphaeroides 2.4.1. Aerobic and Photosynthetic Cell Cultures
Stephen J. Callister, Miguel A. Dominguez, Carrie D. Nicora, Xiaohua Zeng, Christine L. Tavano, Samuel Kaplan, Timothy J. Donohue, Richard D. Smith, and Mary S. Lipton
JOURNAL OF PROTEOME RESEARCH (2006) 5(8): 1940-1947
Proteome modifications of the medicinal leech nervous system under bacterial challenge
David Vergote, Eduardo R. Macagno, Michel Salzet, Pierre-Eric Sautière
PROTEOMICS (2006) 6(17): 4817-4825
Proteomic analysis of a penicillin-tolerant rgg mutant strain of Streptococcus pyogenes.
Chaussee MA, McDowell EJ, Rieck LD, Callegari EA, Chaussee MS.
J Antimicrob Chemother Early Edition: published 5-Aug-2006
Proteomic approaches to bacterial differentiation
Norbeck AD, Callister SJ, Monroe ME, Jaitly N, Elias DA, Lipton MS, Smith RD.
J Microbiol Methods Early Edition: published 16-Aug-2006
A proteomic study of Methylobacterium extorquens reveals a response regulator essential for epiphytic growth
Gourion B, Rossignol M, Vorholt JA.
Proc Natl Acad Sci U S A Early Edition: published 21-Aug-2006
Structural proteomics and computational analysis of a deadly pathogen: combating Mycobacterium tuberculosis from multiple fronts
Strong M, Goulding CW.
Methods Biochem Anal (2006) 49: 245-69
Genome and proteome characterization of the psychrophilic Flavobacterium bacteriophage 11b
Borriss M, Lombardot T, Glockner FO, Becher D, Albrecht D, Schweder T.
Extremophiles Early Edition: published 25-Aug-2006
Adaptation of proteins to different environments: A comparison of proteome structural properties in Bacillus subtilis and Escherichia coli
Marashi SA, Behrouzi R, Pezeshk H.
J Theor Biol Early Edition: published 24-Jul-2006
Proteomic survey through secretome of Bacillus subtilis
Antelmann H, Van Dijl JM, Bron S, Hecker M.
Methods Biochem Anal (2006) 49: 179-208
Glutamine-Binding Protein from Escherichia Coli Specifically Binds a Wheat Gliadin Peptide. 2. Resonance Energy Transfer Studies Suggest a New Sensing Approach for an Easy Detection of Wheat Gliadin
Maria Staiano, Viviana Scognamiglio, Gianfranco Mamone, Mauro Rossi, Antonietta Parracino, Mose' Rossi, and Sabato D'Auria
JOURNAL OF PROTEOME RESEARCH (2006) 5(9): 2083-2086
Partial two-dimensional gel electrophoresis (2-DE) maps of Streptococcus iniae ATCC29178 and Lactococcus garvieae KG9408
Shin GW, Palaksha KJ, Yang HH, Shin YS, Kim YR, Lee EY, Oh MJ, Jung TS.
Dis Aquat Organ (2006) 70(1-2): 71-9
Oxidation of bacterial proteome in response to starvation
Nystrom T.
Methods Biochem Anal (2006) 49: 89-95
Proteomics of Archaea
Cavicchioli R, Goodchild A, Raftery M.
Methods Biochem Anal (2006) 49: 57-72
Proteomics-based Expression Library Screening (PELS): A Novel Method for Rapidly Defining Microbial Immunoproteomes
Indira T. Kudva, Bryan Krastins, Haiqing Sheng, Robert W. Griffin, David A. Sarracino, Phillip I. Tarr, Carolyn J. Hovde, Stephen B. Calderwood, and Manohar John
Mol Cell Proteomics (2006) 5(8): 1514-1519
Proteome of Mycoplasma pneumoniae
Herrmann R, Ruppert T.
Methods Biochem Anal (2006) 49: 39-56
Proteomics of Lactococcus lactis: phenotypes for a domestic bacterium
Kilstrup M.
Methods Biochem Anal (2006) 49: 149-78
Chemostat-based proteomic analysis of toluene-affected Pseudomonas putida S12
Volkers RJ, de Jong AL, Hulst AG, van Baar BL, de Bont JA, Wery J.
Environ Microbiol (2006) 8(9): 1674-9
Proteomics of Corynebacterium glutamicum: essential industrial bacterium
Burkovski A.
Methods Biochem Anal (2006) 49: 137-47
Identification of microbial mixtures by LC-selective proteotypic-peptide analysis(SPA)
Alan A.-L. Lo, Anren Hu, Yen-Peng Ho
Journal of Mass Spectrometry (2006) 41(8): 1049-1060
Tale of two metal reducers: comparative proteome analysis of Geobacter sulferreducens PCA and Shewanella oneidensis MR-1
Giometti CS.
Methods Biochem Anal (2006) 49: 97-111
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Quantification of change in phosphorylation of BCR-ABL kinase and its substrates in response to Imatinib treatment in human chronic myelogenous leukemia cells
Xiquan Liang, Mahbod Hajivandi, Darren Veach, David Wisniewski, Bayard Clarkson, Marilyn D. Resh, R. Marshall Pope
PROTEOMICS (2006) 6(16): 4554-4564
Alterations in the Mitochondrial Proteome of Adriamycin Resistant MCF-7 Breast Cancer Cells
Rachael Strong, Takeo Nakanishi, Douglas Ross, and Catherine Fenselau
JOURNAL OF PROTEOME RESEARCH (2006) 5(9): 2389-2395
Peroxynitrite treatment in vitro disables catalytic activity of recombinant p38 MAPK
Rose P. Webster, Stephen Macha, Diane Brockman, Leslie Myatt
PROTEOMICS (2006) 6(17): 4838-4844
A Proteomics Approach to Identify Protein Expression Changes in Rat Liver Following Administration of 3,5,3'-Triiodo-L-thyronine
Elena Silvestri, Maria Moreno, Luigi Schiavo, Pieter de Lange, Assunta Lombardi, Angela Chambery, Augusto Parente, Antonia Lanni, and Fernando Goglia
JOURNAL OF PROTEOME RESEARCH (2006) 5(9): 2317-2327
Proteomic profiles of induced hepatotoxicity at the subcellular level
Victor Zgoda, Olga Tikhonova, Anastasia Viglinskaya, Marina Serebriakova, Andrey Lisitsa, Alexander Archakov
PROTEOMICS (2006) 6(16): 4662-4670
Proteomic analysis of anti-angiogenic effects by a combined treatment with vinblastine and rapamycin in an endothelial cell line
Natascia Campostrini, Danilo Marimpietri, Andrea Totolo, Carmine Mancone, Gian Maria Fimia, Mirco Ponzoni, Pier Giorgio Righetti
PROTEOMICS (2006) 6(15): 4420-4431
Proteomic Modification by Nitric Oxide.
Bian K, Ke Y, Kamisaki Y, Murad F.
J Pharmacol Sci Early Edition: published 5-Aug-2006
Redox proteomics in the blue mussel Mytilus edulis: Carbonylation is not a pre-requisite for ubiquitination in acute free radical-mediated oxidative stress
McDonagh B, Sheehan D.
Aquat Toxicol Early Edition: published 8-Jul-2006
Quantitative Profiling of Drug-Associated Proteomic Alterations by Combined 2-Nitrobenzenesulfenyl Chloride (NBS) Isotope Labeling and 2DE/MS Identification
Keli Ou, Djohan Kesuma, Kumaresan Ganesan, Kun Yu, Sou Yen Soon, Suet Ying Lee, Xin Pei Goh, Michelle Hooi, Wei Chen, Hiroyuki Jikuya, Tetsuo Ichikawa, Hiroki Kuyama, Ei-ichi Matsuo, Osamu Nishimura, and Patrick Tan
JOURNAL OF PROTEOME RESEARCH (2006) 5(9): 2194-2206
Proteomic Analysis of Pharmacological Preconditioning. Novel Protein Targets Converge to Mitochondrial Metabolism Pathways
Arrell DK, Elliott ST, Kane LA, Guo Y, Ko YH, Pedersen PL, Robinson J, Murata M, Murphy AM, Marban E, Van Eyk JE.
Circ Res Early Edition: published 31-Aug-2006
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A novel peptide microarray for protein detection and analysis utilizing a dry peptide array system.
Usui K, Tomizaki KY, Ohyama T, Nokihara K, Mihara H.
Mol Biosyst (2006) 2(2): 113-21
A chip-based miniaturized format for protein-expression profiling: The exploitation of comprehensively produced antibodies
Hisashi Koga, Motoki Kyo, Kazue Usui-Aoki, Kazuki Inamori
ELECTROPHORESIS (2006) 27(18): 3676-3683
Protein and small molecule microarrays: powerful tools for high-throughput proteomics.
Uttamchandani M, Wang J, Yao SQ.
Mol Biosyst (2006) 2(1): 58-68
A Novel Approach of Protein Immobilization for Protein Chips Using an Oligo-Cysteine Tag
Teruhisa Ichihara, Junko K. Akada, Shuichi Kamei, Saemi Ohshiro, Daisuke Sato, Masanori Fujimoto, Yasuhiro Kuramitsu, and Kazuyuki Nakamura
JOURNAL OF PROTEOME RESEARCH (2006) 5(9): 2144-2151
Survey of microarray technologies suitable to elucidate transcriptional networks as exemplified by studying KRAB zinc finger gene families
Dirk Koczan, Hans-Juergen Thiesen
PROTEOMICS (2006) 6(17): 4704-4715
Use of proteomic patterns of serum biomarkers in patients with chronic obstructive pulmonary disease: correlation with clinical parameters
Pinto-Plata V, Toso J, Lee K, Bilello J, Mullerova H, De Souza M, Vessey R, Celli B.
Proc Am Thorac Soc (2006) 3(6): 465-6
Improved affinity coupling for antibody microarrays: Engineering of double-(His)6-tagged single framework recombinant antibody fragments
Cornelia Steinhauer, Christer Wingren, Farid Khan, Mingyue He, Michael J. Taussig, Carl A. K. Borrebaeck
PROTEOMICS (2006) 6(15): 4227-4234
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UniPep, a database for human N-linked glycosites: A Resource for Biomarker Discovery.
Zhang H, Loriaux P, Eng J, Campbell D, Keller A, Moss P, Bonneau R, Zhang N, Zhou Y, Wollscheid B, Cooke K, Yi EC, Lee H, Peskind ER, Zhang J, Smith RD, Aebersold R.
Genome Biol (2006) 7(8): R73
Metal Affinity Capture Tandem Mass Spectrometry for the Selective Detection of Phosphopeptides
Grady R. Blacken, Michael H. Gelb, and Franti ek Ture ek
ANALYTICAL CHEMISTRY (2006) 78(17): 6065-6073
The role of mass spectrometry in the study of non-enzymatic protein glycation in diabetes: An update
Annunziata Lapolla, Domenico Fedele, Roberta Seraglia, Pietro Traldi
Mass Spectrometry Reviews (2006) 25(5): 775-797
An initial strategy for comparing proteins at the domain architecture level
Kui Lin, Lei Zhu, and Da-Yong Zhang
Bioinformatics (2006) 22(17): 2081-2086
Nonretentive Solid-Phase Extraction of Phosphorylated Peptides from Complex Peptide Mixtures for Detection by Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry
Petra Kapkov , Erika Lattov , and Hélène Perreault
ANALYTICAL CHEMISTRY (2006) 78(19): 7027-7033
Zirconium Phosphonate-Modified Porous Silicon for Highly Specific Capture of Phosphopeptides and MALDI-TOF MS Analysis
Houjiang Zhou, Songyun Xu, Mingliang Ye, Shun Feng, Chensong Pan, Xiaogang Jiang, Xin Li, Guanghui Han, Yu Fu, and Hanfa Zou
JOURNAL OF PROTEOME RESEARCH (2006) 5(9): 2431-2437
Phosphoproteomics toolbox: Computational biology, protein chemistry and mass spectrometry
Hjerrild M, Gammeltoft S.
FEBS Lett Early Edition: published 4-Aug-2006
Targeted glycoproteomics: Serial lectin affinity chromatography in the selection of O-glycosylation sites on proteins from the human blood proteome
Durham M, Regnier FE.
J Chromatogr A Early Edition: published 17-Aug-2006
Separation and characterization of rabbit liver apothioneins by capillary electrophoresis coupled to electrospray ionization time-of-flight mass spectrometry
Balbina Andón, José Barbosa, Victoria Sanz-Nebot
ELECTROPHORESIS (2006) 27(18): 3661-3670
Mass Spectrometry-Based Glycomics Strategy for Exploring N-Linked Glycosylation in Eukaryotes and Bacteria
Xin Liu, David J. McNally, Harald Nothaft, Christine M. Szymanski, Jean-Robert Brisson, and Jianjun Li
ANALYTICAL CHEMISTRY (2006) 78(17): 6081-6087
Methionine oxidation in peptides-a source for false positive phosphopeptide identification in neutral loss driven MS3
Florian Wolschin, Wolfram Weckwerth
Rapid Communications in Mass Spectrometry (2006) 20(16): 2516-2518
Detection of Protein Tyrosine Phosphorylation by Open Sandwich Fluoroimmunoassay
Sasajima Y, Aburatani T, Sakamoto K, Ueda H.
Biotechnol Prog (2006) 22(4): 968-973
Protein Cross-Linking Analysis Using Mass Spectrometry, Isotope-Coded Cross-Linkers, and Integrated Computational Data Processing
Jan Seebacher, Parag Mallick, Ning Zhang, James S. Eddes, Ruedi Aebersold, and Michael H. Gelb
JOURNAL OF PROTEOME RESEARCH (2006) 5(9): 2270-2282
The proteomics of keratin proteins
Plowman JE.
J Chromatogr B Analyt Technol Biomed Life Sci Early Edition: published 21-Aug-2006
Split-Field Drift Tube/Mass Spectrometry and Isotopic Labeling Techniques for Determination of Single Amino Acid Polymorphisms
Stephen J. Valentine, S. Sevugarajan, Ruwan T. Kurulugama, Stormy L. Koeniger, Samuel I. Merenbloom, Brian C. Bohrer, and David E. Clemmer
JOURNAL OF PROTEOME RESEARCH (2006) 5(8): 1879-1887
Substrate and functional diversity of lysine acetylation revealed by a proteomics survey
Kim SC, Sprung R, Chen Y, Xu Y, Ball H, Pei J, Cheng T, Kho Y, Xiao H, Xiao L, Grishin NV, White M, Yang XJ, Zhao Y.
Mol Cell (2006) 23(4): 607-18
Development of Non-Gel-Based Two-Dimensional Separation of Intact Proteins by an On-Line Hyphenation of Capillary Isoelectric Focusing and Hollow Fiber Flow Field-Flow Fractionation
Dukjin Kang and Myeong Hee Moon
ANALYTICAL CHEMISTRY (2006) 78(16): 5789-5798
Detection of Phosphopeptides by Localized Surface Plasma Resonance of Titania-Coated Gold Nanoparticles Immobilized on Glass Substrates
Hong-Yi Lin, Cheng-Tai Chen, and Yu-Chie Chen
ANALYTICAL CHEMISTRY (2006) 78(19): 6873-6878
Using Annotated Peptide Mass Spectrum Libraries for Protein Identification
R. Craig, J. C. Cortens, D. Fenyo, and R. C. Beavis
JOURNAL OF PROTEOME RESEARCH (2006) 5(8): 1843-1849
Non-enzymatic model glycation reactions - a comprehensive study of the reactivity of a modified arginine with aldehydic and diketonic dicarbonyl compounds by electrospray mass spectrometry
Marco A. Saraiva, Carlos M. Borges, M. Helena Florêncio
Journal of Mass Spectrometry (2006) 41(6): 755-770
Kinase domain mutants of bcr-abl exhibit altered transformation potency, kinase activity, and substrate utilization, irrespective of sensitivity to imatinib
Griswold IJ, Macpartlin M, Bumm T, Goss VL, O'hare T, Lee KA, Corbin AS, Stoffregen EP, Smith C, Johnson K, Moseson EM, Wood LJ, Polakiewicz RD, Druker BJ, Deininger MW.
Mol Cell Biol (2006) 26(16): 6082-93
Global Analysis of Protein Tyrosine Phosphatase Activity with Ultra-Sensitive Fluorescent Probes
Sanjai Kumar, Bo Zhou, Fubo Liang, Heyi Yang, Wei-Qing Wang, and Zhong-Yin Zhang
JOURNAL OF PROTEOME RESEARCH (2006) 5(8): 1898-1905
Mass spectrometry for the study of protein glycation in disease
Toshimitsu Niwa
Mass Spectrometry Reviews (2006) 25(5): 713-723
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Advances in the analysis of dynamic protein complexes by proteomics and data processing
Schubert P, Hoffman MD, Sniatynski MJ, Kast J.
Anal Bioanal Chem Early Edition: published 25-Aug-2006
Probing Early Growth Response 1 Interacting Proteins at the Active Promoter in Osteoblast Cells Using Oligoprecipitation and Mass Spectrometry
Zhaojing Meng, Corinne E. Camalier, David A. Lucas, Timothy D. Veenstra, George R. Beck, Jr., and Thomas P. Conrads
JOURNAL OF PROTEOME RESEARCH (2006) 5(8): 1931-1939
A High Efficiency Strategy for Binding Property Characterization of Peptide-binding Domains
Eli Song, Shijuan Gao, Rui Tian, Sucan Ma, Haiming Huang, Jiayan Guo, Yingna Li, Ling Zhang, and Youhe Gao
Mol Cell Proteomics (2006) 5(8): 1368-1381
Reconstructing protein complexes: From proteomics to systems biology
J. Douglas Armstrong, Andrew J. Pocklington, Mark A. Cumiskey, Seth G. N. Grant
PROTEOMICS (2006) 6(17): 4724-4731
A lock-and-key model for protein-protein interactions
Julie L. Morrison, Rainer Breitling, Desmond J. Higham, and David R. Gilbert
Bioinformatics (2006) 22(16): 2012-2019
GenePro: a cytoscape plug-in for advanced visualization and analysis of interaction networks
James Vlasblom, Samuel Wu, Shuye Pu, Mark Superina, Gina Liu, Chris Orsi, and Shoshana J. Wodak
Bioinformatics (2006) 22(17): 2178-2179
NetAlign: a web-based tool for comparison of protein interaction networks
Zhi Liang, Meng Xu, Maikun Teng, and Liwen Niu
Bioinformatics (2006) 22(17): 2175-2177
Protein Bipartivity and Essentiality in the Yeast Protein-Protein Interaction Network
Ernesto Estrada
JOURNAL OF PROTEOME RESEARCH (2006) 5(9): 2177-2184
Investigating the Dynamic Nature of the Interactions between Nuclear Proteins and Histones upon DNA Damage Using an Immobilized Peptide Chemical Proteomics Approach
Eef H. C. Dirksen, Martijn W. H. Pinkse, Dirk T. S. Rijkers, Jacqueline Cloos, Rob M. J. Liskamp, Monique Slijper, and Albert J. R. Heck
JOURNAL OF PROTEOME RESEARCH (2006) 5(9): 2380-2388
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Multi-Q: A Fully Automated Tool for Multiplexed Protein Quantitation
Wen-Ting Lin, Wei-Neng Hung, Yi-Hwa Yian, Kun-Pin Wu, Chia-Li Han, Yet-Ran Chen, Yu-Ju Chen, Ting-Yi Sung, and Wen-Lian Hsu
JOURNAL OF PROTEOME RESEARCH (2006) 5(9): 2328-2338
Method for Quantitative Proteomics Research by Using Metal Element Chelated Tags Coupled with Mass Spectrometry
Huiling Liu, Yangjun Zhang, Jinglan Wang, Dong Wang, Chunxi Zhou, Yun Cai, and Xiaohong Qian
ANALYTICAL CHEMISTRY (2006) 78(18): 6614-6621
Automated Quantification Tool for High-Throughput Proteomics Using Stable Isotope Labeling and LC-MS(n)()
Wang G, Wu WW, Pisitkun T, Hoffert JD, Knepper MA, Shen RF.
Anal Chem (2006) 78(16): 5752-61
In vacuo isotope coded alkylation technique (IVICAT); an N-terminal stable isotopic label for quantitative liquid chromatography/mass spectrometry proteomics
Brigitte L. Simons, Guanghui Wang, Rong-Fong Shen, Mark A. Knepper
Rapid Communications in Mass Spectrometry (2006) 20(16): 2463-2477
Quantification of Intermediate-Abundance Proteins in Serum by Multiple Reaction Monitoring Mass Spectrometry in a Single-Quadrupole Ion Trap
Shanhua Lin, Thomas A. Shaler, and Christopher H. Becker
ANALYTICAL CHEMISTRY (2006) 78(16): 5762-5767
Optimized proteomic analysis of a mouse model of cerebellar dysfunction using amine-specific isobaric tags
Jun Hu, Jin Qian, Oleg Borisov, Sanqiang Pan, Yan Li, Tong Liu, Longwen Deng, Kenneth Wannemacher, Michael Kurnellas, Christa Patterson, Stella Elkabes, Hong Li
PROTEOMICS (2006) 6(15): 4321-4334
High-coverage quantitative proteomics using amine-specific isotopic labeling
Jeremy E. Melanson, Steven L. Avery, Devanand M. Pinto
PROTEOMICS (2006) 6(16): 4466-4474
Automated Quantification Tool for High-Throughput Proteomics Using Stable Isotope Labeling and LC-MSn
Guanghui Wang, Wells W. Wu, Trairak Pisitkun, Jason D. Hoffert, Mark A. Knepper, and Rong-Fong Shen
ANALYTICAL CHEMISTRY (2006) 78(16): 5752-5761
Comprehensive quantitative proteome analysis of 20S proteasome subtypes from rat liver by isotope coded affinity tag and 2-D gel-based approaches
Frank Schmidt, Burkhardt Dahlmann, Katharina Janek, Alexander Kloß, Maik Wacker, Renate Ackermann, Bernd Thiede, Peter R. Jungblut
PROTEOMICS (2006) 6(16): 4622-4632
Analytical Characteristics of Cleavable Isotope-Coded Affinity Tag-LC-Tandem Mass Spectrometry for Quantitative Proteomic Studies
Vaughn CP, Crockett DK, Lim MS, Elenitoba-Johnson KS.
J Mol Diagn (2006) 8(4): 513-20
Analysis of amino acid 13C abundance from human and faunal bone collagen using liquid chromatography/isotope ratio mass spectrometry
James S. O. McCullagh, Dieter Juchelka, Robert E. M. Hedges
Rapid Communications in Mass Spectrometry (2006) 20(18): 2761-2768
Quantitative Analysis of Acrylamide Labeled Serum Proteins by LC-MS/MS
Vitor Faca, Marc Coram, Doug Phanstiel, Veronika Glukhova, Qing Zhang, Matthew Fitzgibbon, Martin McIntosh, and Samir Hanash
JOURNAL OF PROTEOME RESEARCH (2006) 5(8): 2009-2018
A computational approach toward label-free protein quantification using predicted peptide detectability
Tang H, Arnold RJ, Alves P, Xun Z, Clemmer DE, Novotny MV, Reilly JP, Radivojac P.
Bioinformatics (2006) 22(14): e481-8
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Emerging applications for phospho-proteomics in cancer molecular therapeutics.
Moran MF, Tong J, Taylor P, Ewing RM.
Biochim Biophys Acta Early Edition: published 23-Jun-2006
HepatoProteomics: Applying proteomic technologies to the study of liver function and disease
Diamond DL, Proll SC, Jacobs JM, Chan EY, Camp DG 2nd, Smith RD, Katze MG.
Hepatology (2006) 44(2): 299-308
Emerging use of nanoparticles in diagnosis and treatment of breast cancer
Yezhelyev MV, Gao X, Xing Y, Al-Hajj A, Nie S, O'regan RM.
Lancet Oncol (2006) 7(8): 657-67
Phosphoproteomics toolbox: Computational biology, protein chemistry and mass spectrometry
Hjerrild M, Gammeltoft S.
FEBS Lett Early Edition: published 4-Aug-2006
Hot off the Press
[No authors listed]
Mol Biosyst (2005) 1(4): 283-6
Analytical methodologies for the detection and structural characterization of phosphorylated proteins.
D'Ambrosio C, Salzano AM, Arena S, Renzone G, Scaloni A.
J Chromatogr B Analyt Technol Biomed Life Sci Early Edition: published 4-Aug-2006
Proteomics: An Opportunity for Drug Discovery and Development
Ruth A. VanbogelenSven Beushausen
JOURNAL OF PROTEOME RESEARCH (2006) 5(8): 1819
Electrophoretic prefractionation: new commercial tools from an old concept
Sunny Tam
Expert Review of Proteomics (2006) 3(4): 379-381
Proteomic survey through secretome of Bacillus subtilis
Antelmann H, Van Dijl JM, Bron S, Hecker M.
Methods Biochem Anal (2006) 49: 179-208
Proteomic studies of plant-pathogenic oomycetes and fungi
Bruce CR, Van West P, Grenville-Briggs LJ.
Methods Biochem Anal (2006) 49: 271-83
Monolithic media in microfluidic devices for proteomics
Kyung Won Ro, Ranu Nayak, Daniel R. Knapp
ELECTROPHORESIS (2006) 27(18): 3547-3558
Effects of preanalytical variables on peptide and protein measurements in human serum and plasma: implications for clinical proteomics
Alex J Rai, Frank Vitzthum
Expert Review of Proteomics (2006) 3(4): 409-426
Proteome of Mycoplasma pneumoniae
Herrmann R, Ruppert T.
Methods Biochem Anal (2006) 49: 39-56
Protein and small molecule microarrays: powerful tools for high-throughput proteomics.
Uttamchandani M, Wang J, Yao SQ.
Mol Biosyst (2006) 2(1): 58-68
Permanent surface modification of polymeric capillary electrophoresis microchips for protein and peptide analysis
Jikun Liu, Milton L. Lee
ELECTROPHORESIS (2006) 27(18): 3533-3546
Holistic biology of microorganisms: genomics, transcriptomics, and proteomics
Wasinger V.
Methods Biochem Anal (2006) 49: 3-14
Peptidomics for Cancer Diagnosis: Present and Future
Eleftherios P. Diamandis
JOURNAL OF PROTEOME RESEARCH (2006) 5(9): 2079-2082
The Evolution from Protein Chemistry to Proteomics. By Roger L. Lundblad
Righetti PG.
Biotechnol J (2006) 1(6): 705-706
A Review of: "Industrial Proteomics, Applications for Biotechnology and Pharmaceuticals"
Mobarak C.
Drug Dev Ind Pharm (2006) 32(6): 783
Ultra-sensitive and quantitative characterization of proteomes.
Smith RD, Tang K, Shen Y.
Mol Biosyst (2006) 2(5): 221-30