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SPS' DigestIssue 35, 7-Nov-2006 |
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Comments on Standards in Proteomics and the Concept of Fitness-for-Purpose
Mark W. Duncan, Stephen W. Hunsucker
PROTEOMICS (2006) 6(S2): 45-47
Robust Estimation of Peptide Abundance Ratios and Rigorous Scoring of Their Variability and Bias in Quantitative Shotgun Proteomics
Chongle Pan, Guruprasad Kora, David L. Tabb, Dale A. Pelletier, W. Hayes McDonald, Gregory B. Hurst, Robert L. Hettich, and Nagiza F. Samatova
ANALYTICAL CHEMISTRY (2006) 78(20): 7110-7120
Cleaning of raw peptide MS/MS spectra: Improved protein identification following deconvolution of multiply charged peaks, isotope clusters, and removal of background noise
Nedim Mujezinovic, Günther Raidl, James R. A. Hutchins, Jan-Michael Peters, Karl Mechtler, Frank Eisenhaber
PROTEOMICS (2006) 6(19): 5117-5131
Development of an open source laboratory information management system for 2-D gel electrophoresis-based proteomics workflow
Morisawa H, Hirota M, Toda T.
BMC Bioinformatics (2006) 7(1): 430
Regression analysis for comparing protein samples with 16O/18O stable-isotope labeled mass-spectrometry
Eckel-Passow JE, Oberg AL, Therneau TM, Mason CJ, Mahoney DW, Johnson KL, Olson JE, Bergen HR 3rd.
Bioinformatics Early Edition: published 5-Sep-2006
Bioinformatic Standards for Proteomics-Oriented Mass Spectrometry
Droit, Arnaud; Fillon, Joel; Morissette, Jean; Poirier, Guy G.
Current Proteomics (2006) 3(2): 119-128
Proteome informatics II: Bioinformatics for comparative proteomics
Frédérique Lisacek, Sarah Cohen-Boulakia, Ron D. Appel
PROTEOMICS (2006) 6(20): 5445-5466
Robust Algorithm for Alignment of Liquid Chromatography-Mass Spectrometry Analyses in an Accurate Mass and Time Tag Data Analysis Pipeline
Navdeep Jaitly, Matthew E. Monroe, Vladislav A. Petyuk, Therese R. W. Clauss, Joshua N. Adkins, and Richard D. Smith
ANALYTICAL CHEMISTRY (2006) 78(21): 7397-7409
Minimum Reporting Requirements for Proteomics: A MIAPE Primer
Chris F. Taylor
PROTEOMICS (2006) 6(S2): 39-44
Statistical Analysis of the Experimental Variation in the Proteomic Characterization of Human Plasma by Two-Dimensional Difference Gel Electrophoresis
Todd H. Corzett, Imola K. Fodor, Megan W. Choi, Vicki L. Walsworth, Brett A. Chromy, Kenneth W. Turteltaub, and Sandra L. McCutchen-Maloney
JOURNAL OF PROTEOME RESEARCH (2006) 5(10): 2611-2619
Peak quantification in surface-enhanced laser desorption/ionization by using mixture models
Martijn Dijkstra, Han Roelofsen, Roel J. Vonk, Ritsert C. Jansen
PROTEOMICS (2006) 6(19): 5106-5116
Data processing and classification analysis of proteomic changes: a case study of oil pollution in the mussel, Mytilus edulis
Monsinjon T, Andersen OK, Leboulenger F, Knigge T
Proteome Sci (2006) 4(1): 17
Integrating forward and reverse proteomics to unravel protein function
Sandrine Palcy, Eric Chevet
PROTEOMICS (2006) 6(20): 5467-5480
PHProteomicDB: A Module for Two-dimensional Gel Electrophoresis Database Creation on Personal Web Sites
Pernet P, Bruneel A, Baudin B, Vaubourdolle M.
Genomics Proteomics Bioinformatics (2006) 4(2): 134-6
Web-based MS/MS Data Analysis
Frédérique Lisacek
PROTEOMICS (2006) 6(S2): 22-32
Adaptive contrast enhancement of two-dimensional electrophoretic protein gel images facilitates visualization, orientation and alignment
Werner Van Belle, Gry Sjøholt, Nina Ånensen, Kjell-Arild Høgda, Bjørn Tore Gjertsen
ELECTROPHORESIS (2006) 27(20): 4086-4095
Statistics for Proteomics: A Review of Tools for Analyzing Experimental Data
Wolfgang Urfer, Marco Grzegorczyk, Klaus Jung
PROTEOMICS (2006) 6(S2): 48-55
GNBSL: A new integrative system to predict the subcellular location for Gram-negative bacteria proteins
Jian Guo, Yuanlie Lin, Xiangjun Liu
PROTEOMICS (2006) 6(19): 5099-5105
The pitfalls of proteomics experiments without the correct use of bioinformatics tools
David G. Biron, Christine Brun, Thierry Lefevre, Camille Lebarbenchon, Hugh D. Loxdale, François Chevenet, Jean-Paul Brizard, Frédéric Thomas
PROTEOMICS (2006) 6(20): 5577-5596
A database application for pre-processing, storage and comparison of mass spectra derived from patients and controls
Titulaer MK, Siccama I, Dekker LJ, van Rijswijk AL, Heeren RM, Sillevis Smitt PA, Luider TM
BMC Bioinformatics (2006) 7: 403
The HUPO Proteomics Standards Initiative - Overcoming the Fragmentation of Proteomics Data
Henning Hermjakob
PROTEOMICS (2006) 6(S2): 34-38
ProRata: A Quantitative Proteomics Program for Accurate Protein Abundance Ratio Estimation with Confidence Interval Evaluation
Chongle Pan, Guruprasad Kora, W. Hayes McDonald, David L. Tabb, Nathan C. VerBerkmoes, Gregory B. Hurst, Dale A. Pelletier, Nagiza F. Samatova, and Robert L. Hettich
ANALYTICAL CHEMISTRY (2006) 78(20): 7121-7131
Proteome informatics I: Bioinformatics tools for processing experimental data
Patricia M. Palagi, Patricia Hernandez, Daniel Walther, Ron D. Appel
PROTEOMICS (2006) 6(20): 5435-5444
A wavelet-based data pre-processing analysis approach in mass spectrometry
Li X, Li J, Yao X.
Comput Biol Med Early Edition: published 16-Sep-2006
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Analysis of protein expression (secretome) by human and mouse preimplantation embryos
Katz-Jaffe MG, Schoolcraft WB, Gardner DK.
Fertil Steril (2006) 86(3): 678-85
Proteome analysis of B-cell maturation
Johanna M. Salonen, Leena Valmu, Gunilla Rönnholm, Nisse Kalkkinen, Mauno Vihinen
PROTEOMICS (2006) 6(19): 5152-5168
Proteomic Studies of the Intrinsically Unstructured Mammalian Proteome
Charles A. Galea, Vishwajeeth R. Pagala, John C. Obenauer, Cheon-Gil Park, Clive A. Slaughter, and Richard W. Kriwacki
JOURNAL OF PROTEOME RESEARCH (2006) 5(10): 2839-2848
Prohibitin and Cofilin Are Intracellular Effectors of Transforming Growth Factor {beta} Signaling in Human Prostate Cancer Cells
Zhu B, Fukada K, Zhu H, Kyprianou N.
Cancer Res (2006) 66(17): 8640-7
Protein repair in the brain: proteomic analysis of endogenous substrates for protein L-isoaspartyl methyltransferase in mouse brain
Zhu JX, Doyle HA, Mamula MJ, Aswad DW.
J Biol Chem Early Edition: published 7-Sep-2006
Thiophilic adsorption revisited
Hardouin J, Duchateau M, Canelle L, Vlieghe C, Joubert-Caron R, Caron M.
J Chromatogr B Analyt Technol Biomed Life Sci Early Edition: published 31-Aug-2006
Alterations in gamma-actin and tubulin-targeted drug resistance in childhood leukemia
Verrills NM, Po'uha ST, Liu ML, Liaw TY, Larsen MR, Ivery MT, Marshall GM, Gunning PW, Kavallaris M.
J Natl Cancer Inst (2006) 98(19): 1363-74
Proteomic Analysis of Dictyostelium discoideum
Roth U, Muller S, Hanisch FG.
Methods Mol Biol (2006) 346: 95-110
Comparative proteomic analysis of cisplatin sensitive IGROV1 ovarian carcinoma cell line and its resistant counterpart IGROV1-R10
Karen Le Moguen, Hubert Lincet, Edwige Deslandes, Marie Hubert-Roux, Catherine Lange, Laurent Poulain, Pascal Gauduchon, Bruno Baudin
PROTEOMICS (2006) 6(19): 5183-5192
A Proteomic Approach toward the Selection of Proteins with Enhanced Intrinsic Conformational Stability
Vesna Prosinecki, Hugo M. Botelho, Simona Francese, Guido Mastrobuoni, Gloriano Moneti, Tim Urich, Arnulf Kletzin, and Cl udio M. Gomes
JOURNAL OF PROTEOME RESEARCH (2006) 5(10): 2720-2726
Study of the three-way interaction between Trichoderma atroviride, plant and fungal pathogens by using a proteomic approach
Marra R, Ambrosino P, Carbone V, Vinale F, Woo SL, Ruocco M, Ciliento R, Lanzuise S, Ferraioli S, Soriente I, Gigante S, Turra D, Fogliano V, Scala F, Lorito M.
Curr Genet Early Edition: published 29-Aug-2006
Differential Expression of Defense/Stress-Related Marker Proteins in Leaves of a Unique Rice Blast Lesion Mimic Mutant (blm)
Young-Ho Jung, Randeep Rakwal, Ganesh Kumar Agrawal, Junko Shibato, Jung-A Kim, Mi Ok Lee, Pil-Kyu Choi, Seung-Hee Jung, So Hee Kim, Hee-Jong Koh, Masami Yonekura, Hitoshi Iwahashi, and Nam-Soo Jwa
JOURNAL OF PROTEOME RESEARCH (2006) 5(10): 2586-2598
An integrated approach to mapping the proteome of the human bone marrow stromal cell
Beerelli Seshi
PROTEOMICS (2006) 6(19): 5169-5182
Proteomic Technique Used in Studying Ovule Development of Chinese Pine (Pinus tabulaeformis Carr.)
Bao RY, Zheng CX, Zhu LH.
Zhi Wu Sheng Li Yu Fen Zi Sheng Wu Xue Xue Bao (2006) 32(4): 497-503
Identification of prostatic-secreted proteins in mice by mass spectrometric analysis and evaluation of lobe-specific and androgen-dependent mRNA expression
Fujimoto N, Akimoto Y, Suzuki T, Kitamura S, Ohta S.
J Endocrinol (2006) 190(3): 793-803
Proteomic Analysis for the Assessment of Different Lots of Fetal Bovine Serum as a Raw Material for Cell Culture. Part IV. Application of Proteomics to the Manufacture of Biological Drugs
Zheng X, Baker H, Hancock WS, Fawaz F, McCaman M, Pungor E Jr.
Biotechnol Prog (2006) 22(5): 1294-300
Hepatocyte-derived fibrinogen-related protein-1 is associated with the fibrin matrix of a plasma clot
Rijken DC, Dirkx SP, Luider TM, Leebeek FW.
Biochem Biophys Res Commun Early Edition: published 15-Sep-2006
Time-Dependent Proteome Alterations under Osmotic Stress during Aerobic and Anaerobic Growth in Escherichia coli
Weber A, Kogl SA, Jung K.
J Bacteriol (2006) 188(20): 7165-75
A Missed Proteome in Living Organisms: A Hyppo System
Seong, Seung-Yong
Current Proteomics (2006) 3(2): 129-246
Identification of a new truncated form and deamidation products of fibrinopeptide B released by thrombin from human fibrinogen
Cardinali B, Damonte G, Melone L, Salis A, Tosetti F, Rocco M, Profumo A.
Thromb Haemost (2006) 96(3): 302-8
Characterization of Apolipoprotein M Isoforms in Low-Density Lipoprotein
Helen Karlsson, Helen Lindqvist, Christer Tagesson, and Mats Lindahl
JOURNAL OF PROTEOME RESEARCH (2006) 5(10): 2685-2690
Study of proteins associated with the Eimeria tenella refractile body by a proteomic approach
de Venevelles P, Francois Chich J, Faigle W, Lombard B, Loew D, Pery P, Labbe M.
Int J Parasitol Early Edition: published 10-Aug-2006
A differentially expressed proteomic analysis in placental tissues in relation to pungency during the pepper fruit development
Je Min Lee, Seyoon Kim, Ji Young Lee, Eun Young Yoo, Myeong Cheoul Cho, Min Rae Cho, Byung-Dong Kim, Young Yil Bahk
PROTEOMICS (2006) 6(19): 5248-5259
Protein expression in Escherichia coli S17-1 biofilms: impact of indole
Collet A, Vilain S, Cosette P, Junter GA, Jouenne T, Phillips RS, Di Martino P.
Antonie Van Leeuwenhoek Early Edition: published 5-Oct-2006
Global Molecular and Morphological Effects of 24-Hour Chromium(VI) Exposure on Shewanella oneidensis MR-1
Chourey K, Thompson MR, Morrell-Falvey J, Verberkmoes NC, Brown SD, Shah M, Zhou J, Doktycz M, Hettich RL, Thompson DK.
Appl Environ Microbiol (2006) 72(9): 6331-44
Inhibitory Effects of Procyanidin B2 Dimer on Lipid-laden Macrophage Formation
Chen DM, Cai X, Kwik-Uribe CL, Zeng R, Zhu XZ.
J Cardiovasc Pharmacol (2006) 48(2): 54-70
Evaluation of D10-Leu Metabolic Labeling Coupled with MALDI-MS Analysis in Studying the Response of the Yeast Proteome to H2O2 Challenge
Heng Jiang and Ann M. English
JOURNAL OF PROTEOME RESEARCH (2006) 5(10): 2539-2546
The Lipid-Droplet Proteome Reveals that Droplets Are a Protein-Storage Depot
Cermelli S, Guo Y, Gross SP, Welte MA.
Curr Biol (2006) 16(18): 1783-95
Defining the T cell antigen proteome of wasp venom
Aslam A, Kessler B, Batycka M, O'callaghan CA, Misbah SA, Warrell DA, Ogg G.
Clin Exp Allergy (2006) 36(10): 1274-80
The human urinary proteome contains more than 1500 proteins including a large proportion of membranes proteins
Adachi J, Kumar C, Zhang Y, Olsen JV, Mann M.
Genome Biol (2006) 7(9): R80
Post-translational modification of the 20S proteasomal proteins of the archaeon Haloferax volcanii
Humbard MA, Stevens SM Jr, Maupin-Furlow JA.
J Bacteriol Early Edition: published 1-Sep-2006
Comparative proteomic analysis of high cell density cultivations with two recombinant Bacillus megaterium strains for the production of a heterologous dextransucrase
Wang W, Hollmann R, Deckwer WD.
Proteome Sci (2006) 4(1): 19
Detection of Noncovalent Complexes in Biological Samples by Intensity Fading and High-Mass Detection MALDI-TOF Mass Spectrometry
Oscar Yanes, Alexis Nazabal, Ryan Wenzel, Renato Zenobi, and Francesc X. Aviles
JOURNAL OF PROTEOME RESEARCH (2006) 5(10): 2711-2719
Proteomics Analysis Reveals Insight into the Mechanism of H-Ras-Mediated Transformation
Bao-Feng Jin, Kun He, Hong-Xia Wang, Bing Bai, Tao Zhou, Hui-Yan Li, Jiang-Hong Man, Bing-Yu Liu, Wei-Li Gong, Jie Wang, Ai-Ling Li, and Xue-Min Zhang
JOURNAL OF PROTEOME RESEARCH (2006) 5(10): 2815-2823
Proteomic analysis of the hydrophobic fraction of mesenchymal stem cells derived from human umbilical cord blood
Jeong JA, Lee Y, Lee W, Jung S, Lee DS, Jeong N, Lee HS, Bae Y, Jeon CJ, Kim H.
Mol Cells (2006) 22(1): 36-43
Proteomic analyses of murine macrophages treated with Bacillus anthracis lethal toxin
Sapra R, Gaucher SP, Lachmann JS, Buffleben GM, Chirica GS, Comer JE, Peterson JW, Chopra AK, Singh AK.
Microb Pathog Early Edition: published 31-Aug-2006
Comparison of proteomic profiles of serum, plasma, and modified media supplements used for cell culture and expansion
Ayache S, Panelli MC, Byrne KM, Slezak S, Leitman SF, Marincola FM, Stroncek DF.
J Transl Med (2006) 4(1): 40
The Tetrahymena thermophila Phagosome Proteome
Jacobs ME, Desouza LV, Samaranayake H, Pearlman RE, Michael Siu KW, Klobutcher LA.
Eukaryot Cell Early Edition: published 29-Sep-2006
A proteomic analysis of the acute effects of high-intensity exercise on skeletal muscle proteins in fasted rats
Guelfi KJ, Casey TM, Giles JJ, Fournier PA, Arthur PG.
Clin Exp Pharmacol Physiol (2006) 33(10): 952-7
Mitochondrial protein patterns correlating with impaired insulin secretion from INS-1E cells exposed to elevated glucose concentrations
Hanna K. Nyblom, Kristofer Thorn, Meftun Ahmed, Peter Bergsten
PROTEOMICS (2006) 6(19): 5193-5198
Evaluation of the Application of Sodium Deoxycholate to Proteomic Analysis of Rat Hippocampal Plasma Membrane
Jian Zhou, Tieyang Zhou, Rui Cao, Zhen Liu, Jianying Shen, Ping Chen, Xianchun Wang, and Songping Liang
JOURNAL OF PROTEOME RESEARCH (2006) 5(10): 2547-2553
Functional Consequences of Mitochondrial Proteome Heterogeneity
Johnson DT, Harris RA, Blair PV, Balaban RS.
Am J Physiol Cell Physiol Early Edition: published 13-Sep-2006
Proteomic Analysis of the Silkworm (Bombyx mori L.) Hemolymph during Developmental Stage
Xing-hua Li, Xiao-feng Wu, Wan-fu Yue, Jian-mei Liu, Guang-li Li, and Yun-gen Miao
JOURNAL OF PROTEOME RESEARCH (2006) 5(10): 2809-2814
Comparative analysis of the excretory-secretory proteome of the muscle larva of Trichinella pseudospiralis and Trichinella spiralis
Robinson MW, Greig R, Beattie KA, Lamont DJ, Connolly B.
Int J Parasitol Early Edition: published 15-Sep-2006
Age-Related Changes in Human Crystallins Determined from Comparative Analysis of Post-translational Modifications in Young and Aged Lens: Does Deamidation Contribute to Crystallin Insolubility?
P. A. Wilmarth, S. Tanner, S. Dasari, S. R. Nagalla, M. A. Riviere, V. Bafna, P. A. Pevzner, and L. L. David
JOURNAL OF PROTEOME RESEARCH (2006) 5(10): 2554-2566
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Plasma and cerebrospinal fluid-based protein biomarkers for motor neuron disease
Kolarcik C, Bowser R.
Mol Diagn Ther (2006) 10(5): 281-92
Quantitative Proteomic and Genomic Profiling Reveals Metastasis-Related Protein Expression Patterns in Gastric Cancer Cells
Yet-Ran Chen, Hsueh-Fen Juan, Hsuan-Cheng Huang, Hsin-Hung Huang, Ya-Jung Lee, Mei-Yueh Liao, Chien-Wei Tseng, Li-Ling Lin, Jeou-Yuan Chen, Mei-Jung Wang, Jenn-Han Chen, ,O and Yu-Ju Chen
JOURNAL OF PROTEOME RESEARCH (2006) 5(10): 2727-2742
Statistically Integrated Metabonomic-Proteomic Studies on a Human Prostate Cancer Xenograft Model in Mice
Mattias Rantalainen, Olivier Cloarec, Olaf Beckonert, I. D. Wilson, David Jackson, Robert Tonge, Rachel Rowlinson, Steve Rayner, Janice Nickson, Robert W. Wilkinson, Jonathan D. Mills, Johan Trygg, Jeremy K. Nicholson, and Elaine Holmes
JOURNAL OF PROTEOME RESEARCH (2006) 5(10): 2642-2655
Annexin-I as a potential target for green tea extract induced actin remodeling
Xiao GS, Jin YS, Lu QY, Zhang ZF, Belldegrun A, Figlin R, Pantuck A, Yen Y, Li F, Rao J.
Int J Cancer Early Edition: published 3-Oct-2006
Increase diagnostic efficacy by combined use of fingerprint markers in mass spectrometry-Plasma peptidomes from nasopharyngeal cancer patients for example
Chang JT, Chen LC, Wei SY, Chen YJ, Wang HM, Liao CT, Chen IH, Cheng AJ.
Clin Biochem Early Edition: published 7-Sep-2006
Proteomic profiling identifies cyclooxygenase-2-independent global proteomic changes by celecoxib in colorectal cancer cells
Lou J, Fatima N, Xiao Z, Stauffer S, Smythers G, Greenwald P, Ali IU.
Cancer Epidemiol Biomarkers Prev (2006) 15(9): 1598-606
Proteomic analysis of a highly metastatic gastric cancer cell line using two-dimensional differential gel electrophoresis
Takikawa M, Akiyama Y, Maruyama K, Suzuki A, Liu F, Tai S, Ohshita C, Kawaguchi Y, Bandou E, Yonemura Y, Yamaguchi K.
Oncol Rep (2006) 16(4): 705-11
Viral proteomics: A promising approach for understanding JC virus tropism
Veerasamy Ravichandran, Eugene O. Major
PROTEOMICS (2006) 6(20): 5628-5636
Quantification of Membrane and Membrane-Bound Proteins in Normal and Malignant Breast Cancer Cells Isolated from the Same Patient with Primary Breast Carcinoma
Xiquan Liang, Jenson Zhao, Mahbod Hajivandi, Rina Wu, Janet Tao, Joseph W. Amshey, and R. Marshall Pope
JOURNAL OF PROTEOME RESEARCH (2006) 5(10): 2632-2641
Cholesterol loading increases the translocation of ATP synthase beta chain into membrane caveolae in vascular endothelial cells
Wang T, Chen Z, Wang X, Shyy JY, Zhu Y.
Biochim Biophys Acta Early Edition: published 18-Aug-2006
Proteomics Success Story. Novel Biomarkers for DNA Damage Response Pathways: Insights and Applications for Cancer Therapy
Mark O'Connor
PROTEOMICS (2006) 6(S2): 69-71
Proteomics of cerebral injury in a neonatal model of cardiopulmonary bypass with deep hypothermic circulatory arrest
Sheikh AM, Barrett C, Villamizar N, Alzate O, Miller S, Shelburne J, Lodge A, Lawson J, Jaggers J.
J Thorac Cardiovasc Surg (2006) 132(4): 820-828.e2
Repetitive Fragmentation Products of Albumin and {alpha}1-Antitrypsin in Glomerular Diseases Associated with Nephrotic Syndrome
Candiano G, Musante L, Bruschi M, Petretto A, Santucci L, Del Boccio P, Pavone B, Perfumo F, Urbani A, Scolari F, Ghiggeri G.
J Am Soc Nephrol Early Edition: published 27-Sep-2006
Direct-Tissue SELDI-TOF Mass Spectrometry Analysis: A New Application for Clinical Proteomics
Bouamrani A, Ternier J, Ratel D, Benabid AL, Issartel JP, Brambilla E, Berger F.
Clin Chem Early Edition: published 21-Sep-2006
Alterations in gamma-actin and tubulin-targeted drug resistance in childhood leukemia
Verrills NM, Po'uha ST, Liu ML, Liaw TY, Larsen MR, Ivery MT, Marshall GM, Gunning PW, Kavallaris M.
J Natl Cancer Inst (2006) 98(19): 1363-74
Effect of fungal polysaccharides on the modulation of plasma proteins in streptozotocin-induced diabetic rats
Sang Woo Kim, Hye Jin Hwang, Hyun Mi Kim, Myung Chul Lee, Myung Shik Lee, Jang Won Choi, Jong Won Yun
PROTEOMICS (2006) 6(19): 5291-5302
MnSOD marks cord blood late outgrowth endothelial cells and accompanies robust resistance to oxidative stress
Cai H, Gehrig P, Scott TM, Zimmermann R, Schlapbach R, Zisch AH.
Biochem Biophys Res Commun Early Edition: published 20-Sep-2006
Inducible resistance of tumor cells to tumor necrosis factor-related apoptosis-inducing ligand receptor 2-mediated apoptosis by generation of a blockade at the death domain function
Li Y, Wang H, Wang Z, Makhija S, Buchsbaum D, Lobuglio A, Kimberly R, Zhou T.
Cancer Res (2006) 66(17): 8520-8
Secreted Proteome Profiling in Human RPE Cell Cultures Derived from Donors with Age Related Macular Degeneration and Age Matched Healthy Donors
Eunkyung An, Xiaoning Lu, Jessica Flippin, Joseph M. Devaney, Brian Halligan, Eric Hoffman, Karl Csaky, and Yetrib Hathout
JOURNAL OF PROTEOME RESEARCH (2006) 5(10): 2599-2610
Identification of prostatic-secreted proteins in mice by mass spectrometric analysis and evaluation of lobe-specific and androgen-dependent mRNA expression
Fujimoto N, Akimoto Y, Suzuki T, Kitamura S, Ohta S.
J Endocrinol (2006) 190(3): 793-803
Proteome profile of the MCF7 cancer cell line: a mass spectrometric evaluation
Hetal A. Sarvaiya, Jung H. Yoon, Iulia M. Lazar
Rapid Communications in Mass Spectrometry (2006) 20(20): 3039-3055
Proteomic analysis of cancer tissues: Shedding light on carcinogenesis and possible biomarkers
Yasuhiro Kuramitsu, Kazuyuki Nakamura
PROTEOMICS (2006) 6(20): 5650-5661
Proteomics Success Story. Towards Early Detection of Breast and Ovarian Cancer: Plasma Proteomics as a Tool to Find Novel Markers
Serhiy Souchelnytskyi, Marta Lomnytska, Anna Dubrovska, Ulf Hellman, Natalya Volodko
PROTEOMICS (2006) 6(S2): 65-68
Hypusination of eukaryotic initiation factor 5A (EIF-5A): a novel therapeutic target in BCR-ABL-positive leukemias identified by a proteomics approach
Balabanov S, Gontarewicz A, Ziegler P, Hartmann U, Kammer W, Copland M, Brassat U, Priemer M, Hauber I, Wilhelm T, Schwarz G, Kanz L, Bokemeyer C, Hauber J, Holyoake TL, Nordheim A, Brummendorf TH.
Blood Early Edition: published 28-Sep-2006
Urinary biomarker profiling in transitional cell carcinoma
Munro NP, Cairns DA, Clarke P, Rogers M, Stanley AJ, Barrett JH, Harnden P, Thompson D, Eardley I, Banks RE, Knowles MA.
Int J Cancer Early Edition: published 21-Sep-2006
Concentrations of Mitomycin C in Rabbit Corneal Tissue and Aqueous Humor After Topical Administration
Song JS, Kim JH, Yang M, Sul D, Kim HM.
Cornea (2006) 25(Suppl 1): S20-S23
Prohibitin and Cofilin Are Intracellular Effectors of Transforming Growth Factor {beta} Signaling in Human Prostate Cancer Cells
Zhu B, Fukada K, Zhu H, Kyprianou N.
Cancer Res (2006) 66(17): 8640-7
Over-expression of genes and proteins of ubiquitin specific peptidases (USPs) and proteasome subunits (PSs) in breast cancer tissue observed by the methods of RFDD-PCR and proteomics
Deng S, Zhou H, Xiong R, Lu Y, Yan D, Xing T, Dong L, Tang E, Yang H.
Breast Cancer Res Treat Early Edition: published 27-Sep-2006
Evaluation of apolipoprotein A1 and posttranslationally modified forms of transthyretin as biomarkers for ovarian cancer detection in an independent study population
Moore LE, Fung ET, McGuire M, Rabkin CC, Molinaro A, Wang Z, Zhang F, Wang J, Yip C, Meng XY, Pfeiffer RM.
Cancer Epidemiol Biomarkers Prev (2006) 15(9): 1641-6
Comparative proteomic studies on the pathogenesis of human ulcerative colitis
Sen-Yung Hsieh, Tsung-Chieh Shih, Chien-Yuh Yeh, Chun-Jung Lin, Yun-Ying Chou, Ying-Shiung Lee
PROTEOMICS (2006) 6(19): 5322-5331
Causes and Diagnosis of Alzheimers Disease: A Proteomics Approach
Poljak, Anne; Sachdev, Perminder; Smythe, George A.
Current Proteomics (2006) 3(2): 81-112
Limitations in quantitation of the biomarker CCL18 in Gaucher disease blood samples by surface-enhanced laser desorption/ionization time-of-flight mass spectrometry
van Breemen MJ, Bleijlevens B, de Koster CG, Aerts JM.
Biochim Biophys Acta Early Edition: published 22-Aug-2006
Identification of diagnostic markers for tuberculosis by proteomic fingerprinting of serum
Agranoff D, Fernandez-Reyes D, Papadopoulos MC, Rojas SA, Herbster M, Loosemore A, Tarelli E, Sheldon J, Schwenk A, Pollok R, Rayner CF, Krishna S.
Lancet (2006) 368(9540): 1012-21
Strategies for plasma proteomic profiling of cancers
Gilbert S. Omenn
PROTEOMICS (2006) 6(20): 5662-5673
A global proteomics approach identifies novel phosphorylated signaling proteins in GPVI-activated platelets: Involvement of G6f, a novel platelet Grb2-binding membrane adapter
Ángel García, Yotis A. Senis, Robin Antrobus, Craig E. Hughes, Raymond A. Dwek, Steve P. Watson, Nicole Zitzmann
PROTEOMICS (2006) 6(19): 5332-5343
A proteomic approach for the characterization of C677T mutation of the human gene methylenetetrahydrofolate reductase
Marilena Greco, Fernanda Chiriacò, Piero Del Boccio, Luigi Tagliaferro, Raffaele Acierno, Paola Menegazzi, Eleonora Pinca, Francesco Pignatelli, Carlo Storelli, Giorgio Federici, Andrea Urbani, Michele Maffia
PROTEOMICS (2006) 6(19): 5350-5361
Application of proteomic strategies to the identification of urinary biomarkers for prostate cancer: A review
Downes MR, Byrne JC, Dunn MJ, Fitzpatrick JM, Watson RW, Pennington SR.
Biomarkers (2006) 11(5): 406-16
Exosomal Fetuin-A identified by proteomics: A novel urinary biomarker for detecting acute kidney injury
Zhou H, Pisitkun T, Aponte A, Yuen PS, Hoffert JD, Yasuda H, Hu X, Chawla L, Shen RF, Knepper MA, Star RA.
Kidney Int Early Edition: published 4-Oct-2006
Parallel protein and transcript profiles of FSHD patient muscles correlate to the D4Z4 arrangement and reveal a common impairment of slow to fast fibre differentiation and a general deregulation of MyoD-dependent genes
Barbara Celegato, Daniele Capitanio, Mario Pescatori, Chiara Romualdi, Beniamina Pacchioni, Stefano Cagnin, Agnese Viganò, Luca Colantoni, Shajna Begum, Enzo Ricci, Robin Wait, Gerolamo Lanfranchi, Cecilia Gelfi
PROTEOMICS (2006) 6(19): 5303-5321
Biologically variable bypass reduces enzymuria after deep hypothermic circulatory arrest
Singal RK, Docking LM, Girling LG, Graham MR, Nickerson PW, McManus BM, Magil AB, Walker EK, Warrian RK, Cheang MS, Mutch WA.
Ann Thorac Surg (2006) 82(4): 1480-8
Collection, processing, and storage of biological samples in epidemiologic studies: sex hormones, carotenoids, inflammatory markers, and proteomics as examples
Tworoger SS, Hankinson SE.
Cancer Epidemiol Biomarkers Prev (2006) 15(9): 1578-81
Biomarkers in cancer screening, research and detection: present and future: a review
Kumar S, Mohan A, Guleria R.
Biomarkers (2006) 11(5): 385-405
Proteomics and transfusion medicine: Future perspectives
Pierre-Alain Queloz, Lynne Thadikkaran, David Crettaz, Joel S. Rossier, Stefano Barelli, Jean-Daniel Tissot
PROTEOMICS (2006) 6(20): 5605-5614
Proteomic identification of new biomarkers and application in thyroid cytology
Torres-Cabala C, Bibbo M, Panizo-Santos A, Barazi H, Krutzsch H, Roberts DD, Merino MJ.
Acta Cytol (2006) 50(5): 518-28
Plasma Proteomics: A Noninvasive Window on Pathology and Pediatric Cardiac Surgery
Lull ME, Freeman WM, Myers JL, Midgley F, Kimatian SJ, Undar A, Vrana KE.
ASAIO J (2006) 52(5): 562-566
Two-dimensional gel proteome reference map of blood monocytes
Jin M, Diaz PT, Bourgeois T, Eng C, Marsh CB, Wu HM.
Proteome Sci (2006) 4(1): 16
Hippocampus protein profiling reveals aberration of malate dehydrogenase in chlorpromazine/clozapine treated rats
La Y, Wan C, Zhu H, Yang Y, Chen Y, Pan Y, Ji B, Feng G, He L.
Neurosci Lett Early Edition: published 19-Sep-2006
Proteome Analysis of Responses to Ascochlorin in a Human Osteosarcoma Cell Line by 2-D Gel Electrophoresis and MALDI-TOF MS
Jeong Han Kang, Kwan-Kyu Park, In-Seon Lee, Junji Magae, Kunio Ando, Cheorl-Ho Kim, and Young-Chae Chang
JOURNAL OF PROTEOME RESEARCH (2006) 5(10): 2620-2631
Application of serum protein fingerprint in diagnosis of papillary thyroid carcinoma
Jia-Xiang Wang, Jie-kai Yu, Li Wang, Qiu-Liang Liu, Jiao Zhang, Shu Zheng
PROTEOMICS (2006) 6(19): 5344-5349
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Comparative proteomics of rat liver and Morris hepatoma 7777 plasma membranes
Clifton JG, Li X, Reutter W, Hixson DC, Josic D.
J Chromatogr B Analyt Technol Biomed Life Sci Early Edition: published 18-Sep-2006
Plant proteome analysis: A 2004-2006 update
Michel Rossignol, Jean-Benoît Peltier, Hans-Peter Mock, Andrea Matros, Ana M. Maldonado, Jesús V. Jorrín
PROTEOMICS (2006) 6(20): 5529-5548
Rejuvenating rice proteomics: Facts, challenges, and visions
Ganesh Kumar Agrawal, Nam-Soo Jwa, Yumiko Iwahashi, Masami Yonekura, Hitoshi Iwahashi, Randeep Rakwal
PROTEOMICS (2006) 6(20): 5549-5576
Two-dimensional gel proteome reference map of blood monocytes
Jin M, Diaz P, Bourgeois T, Eng C, Marsh C, Wu H
Proteome Sci (2006) 4(1): 16
Protein profile of osteoarthritic human articular cartilage using tandem mass spectrometry
Benjamin A. Garcia, Mark D. Platt, Timothy L. Born, Jeffrey Shabanowitz, Norman A. Marcus, Donald F. Hunt
Rapid Communications in Mass Spectrometry (2006) 20(20): 2999-3006
Proteomic analysis of individual variation in normal livers of human beings using difference gel electrophoresis
Xuequn Zhang, Yuanbiao Guo, Yanping Song, Wei Sun, Chaohui Yu, Xiaohang Zhao, Hongyang Wang, Hongchi Jiang, Youming Li, Xiaohong Qian, Ying Jiang, Fuchu He
PROTEOMICS (2006) 6(19): 5260-5268
Proteomic profiles of thylakoid membranes and changes in response to iron deficiency
Andaluz S, Lopez-Millan AF, De Las Rivas J, Aro EM, Abadia J, Abadia A.
Photosynth Res Early Edition: published 13-Sep-2006
Divide and conquer: Rat liver tissue proteomics based on the analysis of purified constituents
Olga Teufelhofer, Wolfram Parzefall, Leonilla Elbling, Eveline Kainzbauer, Bettina Grasl-Kraupp, Christoph Zielinski, Rolf Schulte-Hermann, Christopher Gerner
ELECTROPHORESIS (2006) 27(20): 4112-4120
Advances in plant proteomics
Sixue Chen, Alice C. Harmon
PROTEOMICS (2006) 6(20): 5504-5516
Comparative proteomic analysis of mouse embryonic stem cells and neonatal-derived cardiomyocytes
Baharvand H, Hajheidari M, Zonouzi R, Ashtiani SK, Hosseinkhani S, Salekdeh GH.
Biochem Biophys Res Commun Early Edition: published 5-Sep-2006
Phosphoproteins analysis in plants: A proteomic approach
Laugesen S, Messinese E, Hem S, Pichereaux C, Grat S, Ranjeva R, Rossignol M, Bono JJ.
Phytochemistry Early Edition: published 6-Sep-2006
Identification of commercial hake and grenadier species by proteomic analysis of the parvalbumin fraction
Mónica Carrera, Benito Cañas, Carmen Piñeiro, Jesús Vázquez, José Manuel Gallardo
PROTEOMICS (2006) 6(19): 5278-5287
Preparation of Plant Samples for 2-D Electrophoresis
Reiner Westermeier
PROTEOMICS (2006) 6(S2): 56-60
Proteomic analysis of rat cerebral cortex, hippocampus and striatum after exposure to morphine
Bierczynska-Krzysik A, Pradeep John JP, Silberring J, Kotlinska J, Dylag T, Cabatic M, Lubec G.
Int J Mol Med (2006) 18(4): 775-84
Effect of piperazine (diethylenediamine) on the moulting, proteome expression and pyrophosphatase activity of Ascaris suum lung-stage larvae
Islam MK, Miyoshi T, Yamada M, Alim MA, Huang X, Motobu M, Tsuji N.
Acta Trop Early Edition: published 18-Sep-2006
High resolution proteome/peptidome analysis of body fluids by capillary electrophoresis coupled with MS
Eric Schiffer, Harald Mischak, Jan Novak
PROTEOMICS (2006) 6(20): 5615-5627
Exercise affects energy metabolism and neural plasticity-related proteins in the hippocampus as revealed by proteomic analysis
Ding Q, Vaynman S, Souda P, Whitelegge JP, Gomez-Pinilla F.
Eur J Neurosci (2006) 24(5): 1265-76
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Immunoproteomic analysis of capsulate and non-capsulate strains of Lactococcus garvieae
Shin GW, Palaksha KJ, Kim YR, Nho SW, Cho JH, Heo NE, Heo GJ, Park SC, Jung TS.
Vet Microbiol Early Edition: published 26-Aug-2006
Proteomic analysis of cold adaptation in a Siberian permafrost bacterium - Exiguobacterium sibiricum 255-15 by two-dimensional liquid separation coupled with mass spectrometry
Yinghua Qiu, Sophia Kathariou, David M. Lubman
PROTEOMICS (2006) 6(19): 5221-5233
Proteomic Profiling and Identification of Immunodominant Spore Antigens of Bacillus anthracis, Bacillus cereus, and Bacillus thuringiensis
Delvecchio VG, Connolly JP, Alefantis TG, Walz A, Quan MA, Patra G, Ashton JM, Whittington JT, Chafin RD, Liang X, Grewal P, Khan AS, Mujer CV.
Appl Environ Microbiol (2006) 72(9): 6355-63
Early events of Bacillus anthracis germination identified by time-course quantitative proteomics
Pratik Jagtap, George Michailidis, Ryszard Zielke, Angela K. Walker, Nishi Patel, John R. Strahler, Adam Driks, Philip C. Andrews, Janine R. Maddock
PROTEOMICS (2006) 6(19): 5199-5211
Origin of magnetosome membrane: Proteomic analysis of magnetosome membrane and comparison with cytoplasmic membrane
Masayoshi Tanaka, Yoshiko Okamura, Atsushi Arakaki, Tsuyoshi Tanaka, Haruko Takeyama, Tadashi Matsunaga
PROTEOMICS (2006) 6(19): 5234-5247
Comparative proteomic analysis of two Entamoeba histolytica strains with different virulence phenotypes identifies peroxiredoxin as an important component of amoebic virulence
Davis PH, Zhang X, Guo J, Townsend RR, Stanley SL Jr.
Mol Microbiol (2006) 61(6): 1523-32
Proteomic Analysis of Protein Expression in Streptococcus pneumoniae in Response to Temperature Shift
Lee MR, Bae SM, Kim TS, Lee KJ.
J Microbiol (2006) 44(4): 375-82
Proteomic based investigation of rhamnolipid production by Pseudomonas chlororaphis strain NRRL B-30761
Gunther NW 4th, Nunez A, Fortis L, Solaiman DK.
J Ind Microbiol Biotechnol Early Edition: published 9-Sep-2006
GNBSL: A new integrative system to predict the subcellular location for Gram-negative bacteria proteins
Jian Guo, Yuanlie Lin, Xiangjun Liu
PROTEOMICS (2006) 6(19): 5099-5105
Identification of alkaline proteins that are differentially expressed in an overgrowth-mediated growth arrest and cell death of Escherichia coli by proteomic methodologies
Sanying Wang, Rui Zhu, Bo Peng, Mingming Liu, Yun Lou, Xintai Ye, Zhengzheng Xu, Dong Liu, Xuanxian Peng
PROTEOMICS (2006) 6(19): 5212-5220
Sub-Speciating Campylobacter jejuni by Proteomic Analysis of Its Protein Biomarkers and Their Post-Translational Modifications
Clifton K. Fagerquist, Anna H. Bates, Sekou Heath, Bryan C. King, Brandon R. Garbus, Leslie A. Harden, and William G. Miller
JOURNAL OF PROTEOME RESEARCH (2006) 5(10): 2527-2538
LC-MS/MS based proteomic analysis and functional inference of hypothetical proteins in Desulfovibrio vulgaris
Zhang W, Culley DE, Gritsenko MA, Moore RJ, Nie L, Scholten JC, Petritis K, Strittmatter EF, Camp DG 2nd, Smith RD, Brockman FJ.
Biochem Biophys Res Commun Early Edition: published 16-Sep-2006
Comparative proteomic analysis of high cell density cultivations with two recombinant Bacillus megateriumstrains for the production of a heterologous dextransucrase
Wang W, Hollmann R, Deckwer W
Proteome Sci (2006) 4(1): 19
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Proteomics-Based Strategy to Identify Biomarkers and Pharmacological Targets in Leukemias with t(4;11) Translocations
Anastasia K. Yocum, Christine M. Busch, Carolyn A. Felix, and Ian A. Blair
JOURNAL OF PROTEOME RESEARCH (2006) 5(10): 2743-2753
Proteomics as a route to identification of toxicity targets in environmental toxicology
Vera A. Dowling, David Sheehan
PROTEOMICS (2006) 6(20): 5597-5604
Proteomic analysis of rat cerebral cortex, hippocampus and striatum after exposure to morphine
Bierczynska-Krzysik A, Pradeep John JP, Silberring J, Kotlinska J, Dylag T, Cabatic M, Lubec G.
Int J Mol Med (2006) 18(4): 775-84
Proteomics and metabolomics: The molecular make-up of toxic aromatic pollutant bioremediation
Om V. Singh
PROTEOMICS (2006) 6(20): 5481-5492
Proteomic Analysis of the Genotoxicant Methylazoxymethanol (MAM)-Induced Changes in the Developing Cerebellum
G. E. Kisby, M. Standley, T. Park, A. Olivas, S. Fei, T. Jacob, A. Reddy, X. Lu, P. Pattee, and S. R. Nagalla
JOURNAL OF PROTEOME RESEARCH (2006) 5(10): 2656-2665
A Pharmacoproteomics Study of the Cancer Cell Line EKVX Using Capillary-LC/MS/MS
Wang Y, Dai Z, Sadee W, Hancock WS.
Mol Pharm (2006) 3(5): 566-78
Effects of chronic ethanol administration on brain protein levels: A proteomic investigation using 2-D DIGE system
Damodaran S, Dlugos CA, Wood TD, Rabin RA.
Eur J Pharmacol (2006) 547(1-3): 75-82
Evaluation of Toxicological Monitoring Markers Using Proteomic Analysis
Donggeun Sul
JOURNAL OF PROTEOME RESEARCH (2006) 5(10): 2525-2526
An Integrated Metabonomic Approach To Describe Temporal Metabolic Disregulation Induced in the Rat by the Model Hepatotoxin Allyl Formate
Ivan K. S. Yap, T. Andrew Clayton, Huiru Tang, Jeremy R. Everett, Gilles Hanton, Jean-Pierre Provost, Jean-Loic Le Net, Claude Charuel, John C. Lindon, and Jeremy K. Nicholson
JOURNAL OF PROTEOME RESEARCH (2006) 5(10): 2675-2684
Detecting and characterizing reactive metabolites by liquid chromatography/tandem mass spectrometry
Shuguang Ma, Raju Subramanian
Journal of Mass Spectrometry (2006) 41(9): 1121-1139
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Non-covalent interaction of 2', 4', 5', 7'-tetrabromo-4, 5, 6, 7-tetrachlorofluorescein with proteins and its application
Hong-Wen Gao, Jian-Fu Zhao, Qiao-Zhi Yang, Xiang-Hu Liu, Ling Chen, Lu-Ting Pan
PROTEOMICS (2006) 6(19): 5140-5151
Quorum sensing affects virulence-associated proteins F1, LcrV, KatY and pH6 etc. of Yersinia pestis as revealed by protein microarray-based antibody profiling
Chen Z, Li B, Zhang J, Qin L, Zhou D, Han Y, Du Z, Guo Z, Song Y, Yang R.
Microbes Infect Early Edition: published 28-Jul-2006
A label-free protein microfluidic array for parallel immunoassays
Zhan-Hui Wang, Yong-Hong Meng, Pei-Qing Ying, Cai Qi, Gang Jin
ELECTROPHORESIS (2006) 27(20): 4078-4085
Protein microarrays for the detection of biomarkers in head and neck squamous cell carcinomas
Weber A, Hengge UR, Stricker I, Tischoff I, Markwart A, Anhalt K, Dietz A, Wittekind C, Tannapfel A.
Hum Pathol Early Edition: published 2-Oct-2006
Signal stability of Cy3 and Cy5 on antibody microarrays
Gu Q, Sivanandam T, Kim C
Proteome Sci (2006) 4(1): 21
Analysis of Protein Expression in Cell Microarrays: A Tool for Antibody-based Proteomics
Andersson AC, Stromberg S, Backvall H, Kampf C, Uhlen M, Wester K, Ponten F.
J Histochem Cytochem Early Edition: published 6-Sep-2006
Differential binding studies applying functional protein microarrays and surface plasmon resonance
Harald Seitz, Silke Hutschenreiter, Claus Hultschig, Carsten Zeilinger, Bastian Zimmermann, Frank Kleinjung, Johannes Schuchhardt, Holger Eickhoff , Friedrich W. Herberg
PROTEOMICS (2006) 6(19): 5132-5139
Tissue microarrays as a platform for proteomic investigation
Chung JY, Braunschweig T, Tuttle K, Hewitt SM.
J Mol Histol Early Edition: published 5-Sep-2006
"Click" synthesis of small molecule probes for activity-based fingerprinting of matrix metalloproteases
Wang J, Uttamchandani M, Li J, Hu M, Yao SQ.
Chem Commun (Camb) (2006) (36): 3783-5.
Label-free detection methods for protein microarrays
Xiaobo Yu, Danke Xu, Quan Cheng
PROTEOMICS (2006) 6(20): 5493-5503
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Identification of Glycoproteins in Human Cerebrospinal Fluid with a Complementary Proteomic Approach
Sheng Pan, Yan Wang, Joseph F. Quinn, Elaine R. Peskind, Dana Waichunas, Jake T. Wimberger, Jinghua Jin, Jane G. Li, David Zhu, Catherine Pan, and Jing Zhang
JOURNAL OF PROTEOME RESEARCH (2006) 5(10): 2769-2779
Systematic screening for palmitoyl transferase activity of the DHHC protein family in mammalian cells
Fukata Y, Iwanaga T, Fukata M.
Methods (2006) 40(2): 177-82
Detecting oxidative post-translational modifications in proteins
Gianazza E, Crawford J, Miller I.
Amino Acids Early Edition: published 6-Oct-2006
Study of Serum Haptoglobin and Its Glycoforms in the Diagnosis of Hepatocellular Carcinoma: A Glycoproteomic Approach
Irene L. Ang, Terence C. W. Poon, Paul B. S. Lai, Anthony T. C. Chan, Sai-Ming Ngai, Alex Y. Hui, Philip J. Johnson, and Joseph J. Y. Sung
JOURNAL OF PROTEOME RESEARCH (2006) 5(10): 2691-2700
Detection of redox-based modification in two-dimensional electrophoresis proteomic separations
Sheehan D.
Biochem Biophys Res Commun Early Edition: published 31-Aug-2006
A global proteomics approach identifies novel phosphorylated signaling proteins in GPVI-activated platelets: Involvement of G6f, a novel platelet Grb2-binding membrane adapter
Ángel García, Yotis A. Senis, Robin Antrobus, Craig E. Hughes, Raymond A. Dwek, Steve P. Watson, Nicole Zitzmann
PROTEOMICS (2006) 6(19): 5332-5343
Phospho-Specific Antibodies: A Versatile Tool for Phosphoproteomic
Sykes, Catherine E.; Vacratsis, Panayiotis O.
Current Proteomics (2006) 3(2): 113-117
Phosphoproteomic profiling of human SH-SY5Y neuroblastoma cells during response to 6-hydroxydopamine-induced oxidative stress
Nakamura M, Yamada M, Ohsawa T, Morisawa H, Nishine T, Nishimura O, Toda T.
Biochim Biophys Acta Early Edition: published 26-Jul-2006
Proteomic identification of palmitoylated proteins
Roth AF, Wan J, Green WN, Yates JR, Davis NG.
Methods (2006) 40(2): 135-42
Archaeal N-terminal Protein Maturation Commonly Involves N-terminal Acetylation: A Large-scale Proteomics Survey
Falb M, Aivaliotis M, Garcia-Rizo C, Bisle B, Tebbe A, Klein C, Konstantinidis K, Siedler F, Pfeiffer F, Oesterhelt D.
J Mol Biol Early Edition: published 3-Aug-2006
Plant phosphoproteomics: A long road ahead
Birgit Kersten, Ganesh Kumar Agrawal, Hitoshi Iwahashi, Randeep Rakwal
PROTEOMICS (2006) 6(20): 5517-5528
Chemistry meets proteomics: The use of chemical tagging reactions for MS-based proteomics
Alexander Leitner, Wolfgang Lindner
PROTEOMICS (2006) 6(20): 5418-5434
Post-translational modification of the 20S proteasomal proteins of the archaeon Haloferax volcanii
Humbard MA, Stevens SM Jr, Maupin-Furlow JA.
J Bacteriol Early Edition: published 1-Sep-2006
Improved Immobilized Metal Affinity Chromatography for Large-Scale Phosphoproteomics Applications
Yasmine M. Ndassa, Chris Orsi, and Jarrod A. Marto She Chen Mark M. Ross
JOURNAL OF PROTEOME RESEARCH (2006) 5(10): 2789-2799
Protein sulfation analysis-A primer
Monigatti F, Hekking B, Steen H.
Biochim Biophys Acta Early Edition: published 26-Jul-2006
Phosphoproteins analysis in plants: A proteomic approach
Laugesen S, Messinese E, Hem S, Pichereaux C, Grat S, Ranjeva R, Rossignol M, Bono JJ.
Phytochemistry Early Edition: published 6-Sep-2006
Proteomic knowledge of human aquaporins
Fulvio Magni, Cecilia Sarto, Davide Ticozzi, Monica Soldi, Niccolò Bosso, Paolo Mocarelli, Marzia Galli Kienle
PROTEOMICS (2006) 6(20): 5637-5649
Dual kinase-mediated regulation of PITK by CaMKII and GSK3
Kwiek NC, Thacker DF, Haystead TA.
Cell Signal Early Edition: published 30-Aug-2006
Enrichment of phosphorylated proteins from cell lysate using a novel phosphate-affinity chromatography at physiological pH
Emiko Kinoshita-Kikuta, Eiji Kinoshita, Atsushi Yamada, Mika Endo, Tohru Koike
PROTEOMICS (2006) 6(19): 5088-5095
Strategy for the Identification of Sites of Phosphorylation in Proteins: Neutral Loss Triggered Electron Capture Dissociation
Steve M. M. Sweet, Andrew J. Creese, and Helen J. Cooper
ANALYTICAL CHEMISTRY (2006) 78(21): 7563-7569
Specific changes in the proteomic pattern produced by the BRCA1-Ser1841Asn missense mutation
Crugliano T, Quaresima B, Gaspari M, Faniello MC, Romeo F, Baudi F, Cuda G, Costanzo F, Venuta S.
Int J Biochem Cell Biol Early Edition: published 30-Aug-2006
A New Computer Program (GlycoX) To Determine Simultaneously the Glycosylation Sites and Oligosaccharide Heterogeneity of Glycoproteins
Hyun Joo An, John S. Tillinghast, David L. Woodruff, David M. Rocke, and Carlito B. Lebrilla , ,
JOURNAL OF PROTEOME RESEARCH (2006) 5(10): 2800-2808
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Biological fingerprinting analysis of the interactome of a kinase inhibitor in human plasma by a chemiproteomic approach
Tian R, Jiang X, Li X, Jiang X, Feng S, Xu S, Han G, Ye M, Zou H.
J Chromatogr A Early Edition: published 15-Sep-2006
Ions of the interactome: The role of MS in the study of protein interactions in proteomics and structural biology
Kevin M. Downard
PROTEOMICS (2006) 6(20): 5374-5384
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Differential Analysis of Membrane Proteins in Mouse Fore- and Hindbrain Using a Label-Free Approach
Thierry Le Bihan, Theo Goh, Ian I. Stewart, Anne Marie Salter, Yury V. Bukhman, Moyez Dharsee, Rob Ewing, and Jacek R. Wi niewski
JOURNAL OF PROTEOME RESEARCH (2006) 5(10): 2701-2710
Limitations in quantitation of the biomarker CCL18 in Gaucher disease blood samples by surface-enhanced laser desorption/ionization time-of-flight mass spectrometry
van Breemen MJ, Bleijlevens B, de Koster CG, Aerts JM.
Biochim Biophys Acta Early Edition: published 22-Aug-2006
Identification and quantification of protein carbonylation using light and heavy isotope labeled Girard's P reagent
Mirzaei H, Regnier F.
J Chromatogr A Early Edition: published 20-Sep-2006
ProRata: A Quantitative Proteomics Program for Accurate Protein Abundance Ratio Estimation with Confidence Interval Evaluation
Chongle Pan, Guruprasad Kora, W. Hayes McDonald, David L. Tabb, Nathan C. VerBerkmoes, Gregory B. Hurst, Dale A. Pelletier, Nagiza F. Samatova, and Robert L. Hettich
ANALYTICAL CHEMISTRY (2006) 78(20): 7121-7131
Metabolic labeling of plant cell cultures with K15NO3 as a tool for quantitative analysis of proteins and metabolites
Engelsberger WR, Erban A, Kopka J, Schulze WX.
Plant Methods (2006) 2(1): 14
A proteomic analysis of the acute effects of high-intensity exercise on skeletal muscle proteins in fasted rats
Guelfi KJ, Casey TM, Giles JJ, Fournier PA, Arthur PG.
Clin Exp Pharmacol Physiol (2006) 33(10): 952-7
Robust Estimation of Peptide Abundance Ratios and Rigorous Scoring of Their Variability and Bias in Quantitative Shotgun Proteomics
Chongle Pan, Guruprasad Kora, David L. Tabb, Dale A. Pelletier, W. Hayes McDonald, Gregory B. Hurst, Robert L. Hettich, and Nagiza F. Samatova
ANALYTICAL CHEMISTRY (2006) 78(20): 7110-7120
Guanidination chemistry for qualitative and quantitative proteomics
Warwood S, Mohammed S, Cristea IM, Evans C, Whetton AD, Gaskell SJ.
Rapid Commun Mass Spectrom (2006) 20(21): 3245-3256
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Contribution of genomics and proteomics in understanding the role of modifying factors in Parkinson's disease
Singh MP, Patel S, Dikshit M, Gupta YK.
Indian J Biochem Biophys (2006) 43(2): 69-81
Rejuvenating rice proteomics: Facts, challenges, and visions
Ganesh Kumar Agrawal, Nam-Soo Jwa, Yumiko Iwahashi, Masami Yonekura, Hitoshi Iwahashi, Randeep Rakwal
PROTEOMICS (2006) 6(20): 5549-5576
Bioinformatic Standards for Proteomics-Oriented Mass Spectrometry
Droit, Arnaud; Fillon, Joel; Morissette, Jean; Poirier, Guy G.
Current Proteomics (2006) 3(2): 119-128
Aqueous polymer two-phase systems: Effective tools for plasma membrane proteomics
Jens Schindler, Hans Gerd Nothwang
PROTEOMICS (2006) 6(20): 5409-5417
Contributions of advanced proteomics technologies to cancer diagnosis
Ciordia S, de Los Rios V, Albar JP.
Clin Transl Oncol (2006) 8(8): 566-80
Viral proteomics: A promising approach for understanding JC virus tropism
Veerasamy Ravichandran, Eugene O. Major
PROTEOMICS (2006) 6(20): 5628-5636
Proteomics of synapse
Li KW.
Anal Bioanal Chem Early Edition: published 25-Jul-2006
Chemistry meets proteomics: The use of chemical tagging reactions for MS-based proteomics
Alexander Leitner, Wolfgang Lindner
PROTEOMICS (2006) 6(20): 5418-5434
Proteomics in gastrointestinal cancer
Ebert MP, Yu J, Lordick F, Rocken C.
Ann Oncol (2006) 17(Suppl 10): x253-x258
Label-free detection methods for protein microarrays
Xiaobo Yu, Danke Xu, Quan Cheng
PROTEOMICS (2006) 6(20): 5493-5503
Advances in plant proteomics
Sixue Chen, Alice C. Harmon
PROTEOMICS (2006) 6(20): 5504-5516
Genomics and proteomics: Emerging technologies in clinical cancer research
Chung CH, Levy S, Chaurand P, Carbone DP.
Crit Rev Oncol Hematol Early Edition: published 30-Sep-2006
Plant proteome analysis: A 2004-2006 update
Michel Rossignol, Jean-Benoît Peltier, Hans-Peter Mock, Andrea Matros, Ana M. Maldonado, Jesús V. Jorrín
PROTEOMICS (2006) 6(20): 5529-5548
Protein stains for proteomic applications: Which, when, why?
Ingrid Miller, Johanne Crawford, Elisabetta Gianazza
PROTEOMICS (2006) 6(20): 5385-5408
Biomarkers in cancer screening, research and detection: present and future: a review
Kumar S, Mohan A, Guleria R.
Biomarkers (2006) 11(5): 385-405
Laser-assisted microdissection (LAM) in developmental biology
Chimge NO, Ruddle F, Bayarsaihan D.
J Exp Zoolog B Mol Dev Evol Early Edition: published 2-Oct-2006
Protein sulfation analysis-A primer
Monigatti F, Hekking B, Steen H.
Biochim Biophys Acta Early Edition: published 26-Jul-2006
Proteomics and metabolomics: The molecular make-up of toxic aromatic pollutant bioremediation
Om V. Singh
PROTEOMICS (2006) 6(20): 5481-5492
Organellar proteomics: turning inventories into insights
Andersen JS, Mann M.
EMBO Rep (2006) 7(9): 874-9
Nanotools for Megaproblems: Probing Protein Misfolding Diseases Using Nanomedicine Modus Operandi
Vladimir N. Uversky, Alexander V. Kabanov, and Yuri L. Lyubchenko
JOURNAL OF PROTEOME RESEARCH (2006) 5(10): 2505-2522
Global and targeted quantitative proteomics for biomarker discovery
Veenstra TD.
J Chromatogr B Analyt Technol Biomed Life Sci Early Edition: published 3-Oct-2006
Application of proteomic strategies to the identification of urinary biomarkers for prostate cancer: A review
Downes MR, Byrne JC, Dunn MJ, Fitzpatrick JM, Watson RW, Pennington SR.
Biomarkers (2006) 11(5): 406-16
Proteomic knowledge of human aquaporins
Fulvio Magni, Cecilia Sarto, Davide Ticozzi, Monica Soldi, Niccolò Bosso, Paolo Mocarelli, Marzia Galli Kienle
PROTEOMICS (2006) 6(20): 5637-5649
Strategies for plasma proteomic profiling of cancers
Gilbert S. Omenn
PROTEOMICS (2006) 6(20): 5662-5673
Plant phosphoproteomics: A long road ahead
Birgit Kersten, Ganesh Kumar Agrawal, Hitoshi Iwahashi, Randeep Rakwal
PROTEOMICS (2006) 6(20): 5517-5528
Detecting oxidative post-translational modifications in proteins
Gianazza E, Crawford J, Miller I.
Amino Acids Early Edition: published 6-Oct-2006
Ions of the interactome: The role of MS in the study of protein interactions in proteomics and structural biology
Kevin M. Downard
PROTEOMICS (2006) 6(20): 5374-5384
Integrating forward and reverse proteomics to unravel protein function
Sandrine Palcy, Eric Chevet
PROTEOMICS (2006) 6(20): 5467-5480
Detecting and characterizing reactive metabolites by liquid chromatography/tandem mass spectrometry
Shuguang Ma, Raju Subramanian
Journal of Mass Spectrometry (2006) 41(9): 1121-1139
Causes and Diagnosis of Alzheimers Disease: A Proteomics Approach
Poljak, Anne; Sachdev, Perminder; Smythe, George A.
Current Proteomics (2006) 3(2): 81-112
Proteomics as a route to identification of toxicity targets in environmental toxicology
Vera A. Dowling, David Sheehan
PROTEOMICS (2006) 6(20): 5597-5604
Proteomic analysis of cancer tissues: Shedding light on carcinogenesis and possible biomarkers
Yasuhiro Kuramitsu, Kazuyuki Nakamura
PROTEOMICS (2006) 6(20): 5650-5661
Proteomics in diagnostic neuropathology
Johnson MD, Floyd JL, Caprioli RM.
J Neuropathol Exp Neurol (2006) 65(9): 837-45
High resolution proteome/peptidome analysis of body fluids by capillary electrophoresis coupled with MS
Eric Schiffer, Harald Mischak, Jan Novak
PROTEOMICS (2006) 6(20): 5615-5627
Phospho-Specific Antibodies: A Versatile Tool for Phosphoproteomic
Sykes, Catherine E.; Vacratsis, Panayiotis O.
Current Proteomics (2006) 3(2): 113-117
Proteomics and transfusion medicine: Future perspectives
Pierre-Alain Queloz, Lynne Thadikkaran, David Crettaz, Joel S. Rossier, Stefano Barelli, Jean-Daniel Tissot
PROTEOMICS (2006) 6(20): 5605-5614
Proteome informatics II: Bioinformatics for comparative proteomics
Frédérique Lisacek, Sarah Cohen-Boulakia, Ron D. Appel
PROTEOMICS (2006) 6(20): 5445-5466
Proteome informatics I: Bioinformatics tools for processing experimental data
Patricia M. Palagi, Patricia Hernandez, Daniel Walther, Ron D. Appel
PROTEOMICS (2006) 6(20): 5435-5444
The pitfalls of proteomics experiments without the correct use of bioinformatics tools
David G. Biron, Christine Brun, Thierry Lefevre, Camille Lebarbenchon, Hugh D. Loxdale, François Chevenet, Jean-Paul Brizard, Frédéric Thomas
PROTEOMICS (2006) 6(20): 5577-5596
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Enrichment of phosphorylated proteins from cell lysate using a novel phosphate-affinity chromatography at physiological pH
Emiko Kinoshita-Kikuta, Eiji Kinoshita, Atsushi Yamada, Mika Endo, Tohru Koike
PROTEOMICS (2006) 6(19): 5088-5095
"Click" synthesis of small molecule probes for activity-based fingerprinting of matrix metalloproteases
Wang J, Uttamchandani M, Li J, Hu M, Yao SQ.
Chem Commun (Camb) (2006) (36): 3783-5.
Usefulness of an integrated microfluidic device (HPLC-Chip-MS) to enhance confidence in protein identification by proteomics
Julie Hardouin, Magalie Duchateau, Raymonde Joubert-Caron, Michel Caron
Rapid Communications in Mass Spectrometry (2006) 20(21): 3236-3244
Proteomic analysis of the hydrophobic fraction of mesenchymal stem cells derived from human umbilical cord blood
Jeong JA, Lee Y, Lee W, Jung S, Lee DS, Jeong N, Lee HS, Bae Y, Jeon CJ, Kim H.
Mol Cells (2006) 22(1): 36-43
Simultaneous electrophoretic analysis of proteins of very high and low molecular weights using low-percentage acrylamide gel and a gradient SDS-PAGE gel
Eduard Casas-Terradellas, Francesc R. Garcia-Gonzalo, Ouadah Hadjebi, Ramon Bartrons, Francesc Ventura, Jose Luis Rosa
ELECTROPHORESIS (2006) 27(20): 3935-3938
Direct-Tissue SELDI-TOF Mass Spectrometry Analysis: A New Application for Clinical Proteomics
Bouamrani A, Ternier J, Ratel D, Benabid AL, Issartel JP, Brambilla E, Berger F.
Clin Chem Early Edition: published 21-Sep-2006
Tissue microarrays as a platform for proteomic investigation
Chung JY, Braunschweig T, Tuttle K, Hewitt SM.
J Mol Histol Early Edition: published 5-Sep-2006
Novel Strategy of High-Abundance Protein Depletion Using Multidimensional Liquid Chromatography
Mingxia Gao, Jie Zhang, Chunhui Deng, Pengyuan Yang, and Xiangmin Zhang
JOURNAL OF PROTEOME RESEARCH (2006) 5(10): 2853-2860
Orbitrap Mass Analyzer - Overview and Applications in Proteomics
Michaela Scigelova, Alexander Makarov
PROTEOMICS (2006) 6(S2): 16-21
GAPP: A Fully Automated Software for the Confident Identification of Human Peptides from Tandem Mass Spectra
Ian Shadforth, Weibing Xu, Daniel Crowther, and Conrad Bessant
JOURNAL OF PROTEOME RESEARCH (2006) 5(10): 2849-2852
Guanidination chemistry for qualitative and quantitative proteomics
Stacey Warwood, Shabaz Mohammed, Ileana M. Cristea, Caroline Evans, Anthony D. Whetton, Simon J. Gaskell
Rapid Communications in Mass Spectrometry (2006) 20(21): 3245-3256
Proteome Analysis of Myxococcus xanthus by Off-Line Two-Dimensional Chromatographic Separation Using Monolithic Poly-(styrene-divinylbenzene) Columns Combined with Ion-Trap Tandem Mass Spectrometry
Christian Schley, Matthias O. Altmeyer, Remco Swart, Rolf Müller, and Christian G. Huber
JOURNAL OF PROTEOME RESEARCH (2006) 5(10): 2760-2768
Highly efficient enrichment and subsequent digestion of proteins in the mesoporous molecular sieve silicate SBA-15 for matrix-assisted laser desorption/ionization mass spectrometry with time-of-flight/time-of-flight analyzer peptide mapping
Chao Zuo, Wenjia Yu, Xufeng Zhou, Dongyuan Zhao, Pengyuan Yang
Rapid Communications in Mass Spectrometry (2006) 20(20): 3139-3144
Improved protocol for chromatofocusing on the ProteomeLab PF2D
Olivier Barré, Marc Solioz
PROTEOMICS (2006) 6(19): 5096-5098
Analysis of Membrane Protein Complexes by Blue Native PAGE
Veronika Reisinger, Lutz Andreas Eichacker
PROTEOMICS (2006) 6(S2): 6-15
A label-free protein microfluidic array for parallel immunoassays
Zhan-Hui Wang, Yong-Hong Meng, Pei-Qing Ying, Cai Qi, Gang Jin
ELECTROPHORESIS (2006) 27(20): 4078-4085
Mass distribution and focusing properties of carrier ampholytes for isoelectric focusing: I. Novel and unexpected results
Roberto Sebastiano, Carolina Simó, Martha Elena Mendieta, Paolo Antonioli, Attilio Citterio, Alejandro Cifuentes, Gabriel Peltre, Pier Giorgio Righetti
ELECTROPHORESIS (2006) 27(20): 3919-3934
Profiling Signaling Peptides in Single Mammalian Cells Using Mass Spectrometry
Stanislav S. Rubakhin, James D. Churchill, William T. Greenough, and Jonathan V. Sweedler
ANALYTICAL CHEMISTRY (2006) 78(20): 7267-7272
Multiplexed PrEST immunization for high-throughput affinity proteomics
Larsson K, Wester K, Nilsson P, Uhlen M, Hober S, Wernerus H.
J Immunol Methods Early Edition: published 17-Aug-2006
Detection of protein carbonyls in aging liver tissue: A fluorescence-based proteomic approach
Chaudhuri AR, de Waal EM, Pierce A, Van Remmen H, Ward WF, Richardson A.
Mech Ageing Dev Early Edition: published 23-Sep-2006
Interest of major serum protein removal for Surface-Enhanced Laser Desorption/Ionization - Time Of Flight (SELDI-TOF) proteomic blood profiling
Roche S, Tiers L, Provansal M, Piva M, Lehmann S
Proteome Sci (2006) 4(1): 20
Improved Mass Spectrometric Proteomic Profiling of the Secretome of Rat Vascular Endothelial Cells
M. C. Pellitteri-Hahn, M. C. Warren, D. N. Didier, E. L. Winkler, S. P. Mirza, A. S. Greene, and M. Olivier
JOURNAL OF PROTEOME RESEARCH (2006) 5(10): 2861-2864
Sample preparation project for the subcellular proteome of mouse liver
Yanping Song, Yunwei Hao, Aihua Sun, Tao Li, Wenrui Li, Lihai Guo, Yujuan Yan, Chao Geng, Ning Chen, Fan Zhong, Handong Wei, Ying Jiang, Fuchu He
PROTEOMICS (2006) 6(19): 5269-5277
Proteomic identification of palmitoylated proteins
Roth AF, Wan J, Green WN, Yates JR, Davis NG.
Methods (2006) 40(2): 135-42
Detection of redox-based modification in two-dimensional electrophoresis proteomic separations
Sheehan D.
Biochem Biophys Res Commun Early Edition: published 31-Aug-2006
Aqueous polymer two-phase systems: Effective tools for plasma membrane proteomics
Jens Schindler, Hans Gerd Nothwang
PROTEOMICS (2006) 6(20): 5409-5417
Simple Urinary Sample Preparation for Proteomic Analysis
Alamgir Khan and Nicolle H. Packer
JOURNAL OF PROTEOME RESEARCH (2006) 5(10): 2824-2838
Sperm and oocyte isolation methods for biochemical and proteomic analysis
Miller MA.
Methods Mol Biol (2006) 351: 193-202
Strategy for the Identification of Sites of Phosphorylation in Proteins: Neutral Loss Triggered Electron Capture Dissociation
Steve M. M. Sweet, Andrew J. Creese, and Helen J. Cooper
ANALYTICAL CHEMISTRY (2006) 78(21): 7563-7569
Sensitive, Quantitative, and Fast Modifications for Coomassie Blue Staining of Polyacrylamide Gels
Reiner Westermeier
PROTEOMICS (2006) 6(S2): 61-64
Enhanced Sequence Coverage in Tryptic Fragment Analysis by Two-Dimensional HPLC/MS Using a Monolithic Silica Capillary Column
Morisaka H, Hata K, Mima J, Tanigawa T, Furuno M, Ishizuka N, Tanaka N, Ueda M.
Biosci Biotechnol Biochem (2006) 70(9): 2154-9
Analysis of Complex Protein Mixtures with Improved Sequence Coverage Using (CE-MS/MS)n
Selynda Garza and Mehdi Moini
ANALYTICAL CHEMISTRY (2006) 78(20): 7309-7316
A New Approach for the Detection and Identification of Protein Impurities Using Combinatorial Solid Phase Ligand Libraries
Fréderic Fortis, Luc Guerrier, Liliana B. Areces, Paolo Antonioli, Tim Hayes, Kevin Carrick, David Hammond, Egisto Boschetti, and Pier Giorgio Righetti
JOURNAL OF PROTEOME RESEARCH (2006) 5(10): 2577-2585
Protein profile of osteoarthritic human articular cartilage using tandem mass spectrometry
Benjamin A. Garcia, Mark D. Platt, Timothy L. Born, Jeffrey Shabanowitz, Norman A. Marcus, Donald F. Hunt
Rapid Communications in Mass Spectrometry (2006) 20(20): 2999-3006
The Proteomic Reactor: A Microfluidic Device for Processing Minute Amounts of Protein Prior to Mass Spectrometry Analysis
Martin Ethier, Weimin Hou, Henry S. Duewel, and Daniel Figeys
JOURNAL OF PROTEOME RESEARCH (2006) 5(10): 2754-2759
Effect of barium tetraborate on the separation of tryptic digests of proteins by zone electrophoresis in uncoated capillaries
Martha Elena Mendieta, Paolo Antonioli, Pier Giorgio Righetti, Attilio Citterio, Stephanie Descroix, Roberto Sebastiano
ELECTROPHORESIS (2006) 27(20): 4016-4024
MALDI-MS Direct Tissue Analysis of Proteins: Improving Signal Sensitivity Using Organic Treatments
R. Lemaire, M. Wisztorski, A. Desmons, J. C. Tabet, R. Day, M. Salzet, and I. Fournier
ANALYTICAL CHEMISTRY (2006) 78(20): 7145-7153
Analyzing proteome topology and function by automated multidimensional fluorescence microscopy
Schubert W, Bonnekoh B, Pommer AJ, Philipsen L, Bockelmann R, Malykh Y, Gollnick H, Friedenberger M, Bode M, Dress AW.
Nat Biotechnol Early Edition: published 1-Oct-2006
Effect of 2MEGA Labeling on Membrane Proteome Analysis Using LC-ESI QTOF MS
Chengjie Ji, Andy Lo, Sandra Marcus, and Liang Li
JOURNAL OF PROTEOME RESEARCH (2006) 5(10): 2567-2576
Systematic screening for palmitoyl transferase activity of the DHHC protein family in mammalian cells
Fukata Y, Iwanaga T, Fukata M.
Methods (2006) 40(2): 177-82
Proteome profile of the MCF7 cancer cell line: a mass spectrometric evaluation
Hetal A. Sarvaiya, Jung H. Yoon, Iulia M. Lazar
Rapid Communications in Mass Spectrometry (2006) 20(20): 3039-3055
A method for rapidly confirming protein N-terminal sequences by matrix-assisted laser desorption/ionization mass spectrometry
Chunxi Zhou, Yangjun Zhang, Peibin Qin, Xin Liu, Liyan Zhao, Shuhua Yang, Yun Cai, Xiaohong Qian
Rapid Communications in Mass Spectrometry (2006) 20(19): 2878-2884
Pre-fractionation of archival frozen tumours for proteomics applications
Forsberg L, Larsson C, Sofiadis A, Lewensohn R, Hoog A, Lehtio J.
J Biotechnol Early Edition: published 31-Jul-2006
Preparation of Plant Samples for 2-D Electrophoresis
Reiner Westermeier
PROTEOMICS (2006) 6(S2): 56-60
Protein stains for proteomic applications: Which, when, why?
Ingrid Miller, Johanne Crawford, Elisabetta Gianazza
PROTEOMICS (2006) 6(20): 5385-5408
PDMS-based microfluidics for proteomic analysis
Dodge A, Brunet E, Chen S, Goulpeau J, Labas V, Vinh J, Tabeling P.
Analyst (2006) 131(10): 1122-8
Dynamic isoelectric focusing for proteomics
Montgomery R, Jia X, Tolley L.
Anal Chem (2006) 78(18): 6511-8
Proteomics Characterization of Protein Adsorption onto Hemodialysis Membranes
Mario Bonomini, Barbara Pavone, Vittorio Sirolli, Francesca Del Buono, Moreno Di Cesare, Piero Del Boccio, Luigi Amoroso, Carmine Di Ilio, Paolo Sacchetta, Giorgio Federici, and Andrea Urbani
JOURNAL OF PROTEOME RESEARCH (2006) 5(10): 2666-2674
Automatic internal calibration in liquid chromatography/Fourier transform ion cyclotron resonance mass spectrometry of protein digests
Magnus Palmblad, Laurence V. Bindschedler, Trevor M. Gibson, Rainer Cramer
Rapid Communications in Mass Spectrometry (2006) 20(20): 3076-3080
Hepatocyte-derived fibrinogen-related protein-1 is associated with the fibrin matrix of a plasma clot
Rijken DC, Dirkx SP, Luider TM, Leebeek FW.
Biochem Biophys Res Commun Early Edition: published 15-Sep-2006
Agarose isoelectric focusing can improve resolution of membrane proteins in the two-dimensional electrophoresis of bacterial proteins
Pia Altenhofer, Angelika Schierhorn, Beate Fricke
ELECTROPHORESIS (2006) 27(20): 4096-4111
New Protein Extraction/Solubilization Protocol for Gel-based Proteomics of Rat (Female) Whole Brain and Brain Regions
Hirano M, Rakwal R, Shibato J, Agrawal GK, Jwa NS, Iwahashi H, Masuo Y.
Mol Cells (2006) 22(1): 119-25
Polyethylene glycol fractionation improved detection of low-abundant proteins by two-dimensional electrophoresis analysis of plant proteome
Xi J, Wang X, Li S, Zhou X, Yue L, Fan J, Hao D.
Phytochemistry Early Edition: published 12-Sep-2006
Discontinuous native protein gel electrophoresis
Michael Niepmann, Junfeng Zheng
ELECTROPHORESIS (2006) 27(20): 3949-3951
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Knowledge Discovery in Proteomics. By Igor Jurisica and Dennis Wigle
Gerard Cagney
PROTEOMICS (2006) 6(19): 5363
Protein Structure Prediction: Concepts and Applications. By Anna Tramontano
Pier Giorgio Righetti
PROTEOMICS (2006) 6(19): 5364
Encyclopedia of Genetics, Genomics, Proteomics and Bioinformatics. By Mike Dunn, Lynn Jorde, Peter Little, and Shankar Subramaniam (Eds.)
Concha Gil
PROTEOMICS (2006) 6(19): 5362-5363
Review: Identification of Microorganisms by Mass Spectroscopy
Carol L. Nilsson
ANALYTICAL CHEMISTRY (2006) 78(21): 7383-7384
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In the Postgenomic Era, Can High-Dimensional Analyses Deliver the Answers We're Looking for?
Barnes S.
J Nutr (2006) 136(10): 2709S-10S
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The impact of protein characterization in structural proteomics
Geerlof A, Brown J, Coutard B, Egloff MP, Enguita FJ, Fogg MJ, Gilbert RJ, Groves MR, Haouz A, Nettleship JE, Nordlund P, Owens RJ, Ruff M, Sainsbury S, Svergun DI, Wilmanns M.
Acta Crystallogr D Biol Crystallogr (2006) 62(Pt 10): 1125-36
The impact of genomics and proteomics in the clinic: functional genetic polymorphisms and their value in response and toxicity prediction in solid tumours
Stoehlmacher J.
Ann Oncol (2006) 17(Suppl 10): x263-x268
Geographical Focus. Proteomics Initiatives in Spain: ProteoRed
Alberto Paradela, Pedro-Ramón Escuredo, Juan-Pablo Albar
PROTEOMICS (2006) 6(S2): 73-76
Exploring the proteomics universe
Elizabeth Zubritsky
ANALYTICAL CHEMISTRY (2006) 78(21): 7368-7369
Patent Notes: Practical Proteomics 1-2/2006
PROTEOMICS (2006) 6(S2): 83-87
A path or a new road in laboratory diagnostics? Biological mass spectrometry: facts and perspectives
Elek G, Lapis K.
Pathol Oncol Res (2006) 12(3): 178-83
Proteomics, metabolomics and circulating endothelial progenitor cells in acute coronary syndromes
Goon PK, Lip GY.
J Thromb Thrombolysis (2006) 22(2): 155-6
Methodology in plasma proteomic pattern experiments
Van Gorp T, Vergote IB, Pochet NL, Amant F.
Int J Gynecol Cancer (2006) 16(5): 1951-2
Report. Proteomics Education, an Important Challenge for the Scientific Community: Report on the Activities of the EuPA Education Committee
Peter James, Garry Corthals, Concha Gil
PROTEOMICS (2006) 6(S2): 77-81