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SPS' Digest

Issue 36, 1-Dec-2006


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Quick jumps to articles in: Bioinformatics (11) / Biological applications (37) / Biomedical and clinical applications (38) / Eukaryotic Cells And Tissues (12) / Prokaryotes (10) / Pharmacology and Toxicology (4) / Protein Array (4) / Protein Characterization - PTMs (10) / Protein-protein interaction (3) / Quantitation (3) / Review (5) / Methodology (37) / Meeting (1) /


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In this issue, 149 articles have been selected from:
Disclaimer: The selection and categorisation reflect the views and understandings of contributors (i.e. SPS members).

Quick jumps to articles in: Bioinformatics (11) / Biological applications (37) / Biomedical and clinical applications (38) / Eukaryotic Cells And Tissues (12) / Prokaryotes (10) / Pharmacology and Toxicology (4) / Protein Array (4) / Protein Characterization - PTMs (10) / Protein-protein interaction (3) / Quantitation (3) / Review (5) / Methodology (37) / Meeting (1) /


Bioinformatics

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Analysis of the S. cerevisiae proteome with PeptideAtlas
King N, Deutsch E, Ranish J, Nesvizhskii A, Eddes J, Mallick P, Eng J, Desiere F, Flory M, Martin D, Kim B, Lee H, Raught B, Aebersold R
Genome Biology (2006) 7(11): R106

Parallel Processing of Large Datasets from NanoLC-FTICR-MS Measurements
van der Burgt YE, Taban IM, Konijnenburg M, Biskup M, Duursma MC, Heeren RM, Rompp A, van Nieuwpoort RV, Bal HE.
J Am Soc Mass Spectrom Early Edition: published 18-Oct-2006

ProCAT: a data analysis approach for protein microarrays
Zhu X, Gerstein M, Snyder M
Genome Biology (2006) 7(11): R110

MASCOT HTML and XML parser: An implementation of a novel object model for protein identification data
Chunguang G. Yang, Stephen J. Granite, Jennifer E. Van Eyk, Raimond L. Winslow
PROTEOMICS (2006) 6(21): 5688-5693

Integration of gel-based proteome data with pProRep
Laukens K, Matthiesen R, Lemiere F, Esmans E, Van Onckelen H, Jensen ON, Witters E.
Bioinformatics Early Edition: published 10-Oct-2006

Sequence-Specific Retention Calculator. Algorithm for Peptide Retention Prediction in Ion-Pair RP-HPLC: Application to 300- and 100-Å Pore Size C18 Sorbents
Oleg V. Krokhin
ANALYTICAL CHEMISTRY (2006) 78(22): 7785-7795

Chapter 4 Functional genomics and proteomics in the clinical neurosciences: data mining and bioinformatics
Phan JH, Quo CF, Wang MD.
Prog Brain Res (2006) 158: 83-108

Normalization and expression changes in predefined sets of proteins using 2D gel electrophoresis: A proteomic study of L-DOPA induced dyskinesia in an animal model of Parkinsons disease using DIGE
Kultima K, Scholz B, Alm H, Skold K, Svensson M, Crossman AR, Bezard E, Andren PE, Lonnstedt I.
BMC Bioinformatics (2006) 7(1): 475

Performance Evaluation of Existing De Novo Sequencing Algorithms
Sergey Pevtsov, Irina Fedulova, Hamid Mirzaei, Charles Buck, and Xiang Zhang
JOURNAL OF PROTEOME RESEARCH (2006) 5(11): 3018-3028

MannDB - A microbial database of automated protein sequence analyses and evidence integration for protein characterization
Ecale Zhou CL, Lam MW, Smith JR, Zemla AT, Dyer MD, Kuczmarski TA, Vitalis EA, Slezak TR.
BMC Bioinformatics (2006) 7(1): 459

Aligning families of two-dimensional gels by a combined multiresolution forward-inverse transformation approach
Potra FA, Liu X.
J Comput Biol (2006) 13(7): 1384-95


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Biological applications

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Proteomic-based analysis of nuclear signaling: PLC?1 affects the expression of the splicing factor SRp20 in Friend erythroleukemia cells
Alberto Bavelloni, Irene Faenza, Gabriella Cioffi, Manuela Piazzi, Daniela Parisi, Ivan Matic, Nadir M. Maraldi, Lucio Cocco
PROTEOMICS (2006) 6(21): 5725-5734

Quantitative Proteomics Analysis of Detergent-resistant Membranes from Chemical Synapses: Evidence for Cholesterol as Spatial Organizer of Synaptic Vesicle Cycling
Jun-yong Jia, Stephanie Lamer, Michael Schumann, Michael R. Schmidt, Eberhard Krause, and Volker Haucke
Mol Cell Proteomics (2006) 5(11): 2060-2071

Proteomic and Bioinformatic Characterization of the Biogenesis and Function of Melanosomes
An Chi, Julio C. Valencia, Zhang-Zhi Hu, Hidenori Watabe, Hiroshi Yamaguchi, Nancy J. Mangini, Hongzhan Huang, Victor A. Canfield, Keith C. Cheng, Feng Yang, Riichiro Abe, Shoichi Yamagishi, Jeffrey Shabanowitz, Vincent J. Hearing, Cathy Wu, Ettore Appella, and Donald F. Hunt
JOURNAL OF PROTEOME RESEARCH (2006) 5(11): 3135-3144

Global Profiling of Surface Plasma Membrane Proteome of Oviductal Epithelial Cells
Edita Sostaric, Aristophanes S. Georgiou, Chi H. Wong, Paul F. Watson, William V. Holt, and Alireza Fazeli
JOURNAL OF PROTEOME RESEARCH (2006) 5(11): 3029-3037

Peptide Microarray Analysis of Substrate Specificity of the Transmembrane Ser/Thr Kinase KPI-2 Reveals Reactivity with Cystic Fibrosis Transmembrane Conductance Regulator and Phosphorylase
Hong Wang and David L. Brautigan
Mol Cell Proteomics (2006) 5(11): 2124-2130

Characterisation of organellar proteomes: A guide to subcellular proteomic fractionation and analysis
Edwin Ho, Andrew Hayen, Marc R. Wilkins
PROTEOMICS (2006) 6(21): 5746-5757

Characterization of bovine seminal plasma by proteomics
Van C. Kelly, Sulee Kuy, David J. Palmer, Zhenzhong Xu, Stephen R. Davis, Garth J. Cooper
PROTEOMICS (2006) 6(21): 5826-5833

Proteome analysis of recombinant Escherichia coli producing human glucagon-like peptide-1
Lee DH, Kim SG, Park YC, Nam SW, Lee KH, Seo JH.
J Chromatogr B Analyt Technol Biomed Life Sci Early Edition: published 16-Oct-2006

The ROP2 family of Toxoplasma gondii rhoptry proteins: Proteomic and genomic characterization and molecular modeling
Hiba El Hajj, Emmanuelle Demey, Joël Poncet, Maryse Lebrun, Bo Wu, Nathalie Galéotti, Marie Noëlle Fourmaux, Odile Mercereau-Puijalon, Henri Vial, Gilles Labesse, Jean François Dubremetz
PROTEOMICS (2006) 6(21): 5773-5784

Definition of the mitochondrial proteome by measurement of molecular masses of membrane proteins
Carroll J, Fearnley IM, Walker JE.
Proc Natl Acad Sci U S A Early Edition: published 23-Oct-2006

Identification of Ethylene-Mediated Protein Changes during Nodulation in Medicago truncatula Using Proteome Analysis
Joko Prayitno, Nijat Imin, Barry G. Rolfe, and Ulrike Mathesius
JOURNAL OF PROTEOME RESEARCH (2006) 5(11): 3084-3095

Identification and Characterization of New Protein Chemoattractants in the Frog Skin Secretome
Baptiste Leroy, Gerard Toubeau, Paul Falmagne, and Ruddy Wattiez
Mol Cell Proteomics (2006) 5(11): 2114-2123

Effect of fluoroquinolone exposure on the proteome of Salmonella enterica serovar Typhimurium
Coldham NG, Randall LP, Piddock LJ, Woodward MJ.
J Antimicrob Chemother Early Edition: published 24-Oct-2006

Unusual N-Glycan Structures in {alpha}-Mannosidase II/IIx Double Null Embryos Identified by a Systematic Glycomics Approach Based on Two-dimensional LC Mapping and Matrix-dependent Selective Fragmentation Method in MALDI-TOF/TOF Mass Spectrometry
Megumi Hato, Hiroaki Nakagawa, Masaki Kurogochi, Tomoya O. Akama, Jamey D. Marth, Michiko N. Fukuda, and Shin-Ichiro Nishimura
Mol Cell Proteomics (2006) 5(11): 2146-2157

Proteomic analysis of nipple aspirate fluid throughout the menstrual cycle in healthy pre-menopausal women
Noble J, Dua RS, Locke I, Eeles R, Gui GP, Isacke CM.
Breast Cancer Res Treat Early Edition: published 24-Oct-2006

A Soluble 3D LC/MS/MS Proteome of the Filamentous Cyanobacterium Nostoc punctiforme
D. C. Anderson, Elsie L. Campbell, and John C. Meeks
JOURNAL OF PROTEOME RESEARCH (2006) 5(11): 3096-3104

Identification of PSME3 as a Novel Serum Tumor Marker for Colorectal Cancer by Combining Two-dimensional Polyacrylamide Gel Electrophoresis with a Strictly Mass Spectrometry-based Approach for Data Analysis
Markus Roessler, Wolfgang Rollinger, Liliana Mantovani-Endl, Marie-Luise Hagmann, Stefan Palme, Peter Berndt, Alfred M. Engel, Michael Pfeffer, Johann Karl, Heinz Bodenmuller, Josef Ruschoff, Thomas Henkel, Gerhard Rohr, Siegbert Rossol, Wolfgang Rosch, Hanno Langen, Werner Zolg, and Michael Tacke
Mol Cell Proteomics (2006) 5(11): 2092-2101

A functional genomic and proteomic perspective of sea urchin calcium signaling and egg activation
Roux MM, Townley IK, Raisch M, Reade A, Bradham C, Humphreys G, Gunaratne HJ, Killian CE, Moy G, Su YH, Ettensohn CA, Wilt F, Vacquier VD, Burke RD, Wessel G, Foltz KR.
Dev Biol Early Edition: published 12-Sep-2006

In vivo detection of secreted proteins from wounded skin using capillary ultrafiltration probes and mass spectrometric proteomics
Chun-Ming Huang, Chao-Cheng Wang, Stephen Barnes, Craig A. Elmets
PROTEOMICS (2006) 6(21): 5805-5814

Modifications to the Arabidopsis defense Proteome Occur Prior to Significant Transcriptional Change in Response to Inoculation with Pseudomonas syringae
Jones AM, Thomas V, Bennett MH, Mansfield J, Grant M.
Plant Physiol Early Edition: published 6-Oct-2006

Identification of Apolipoprotein A-I as a "STOP" Signal for Myopia
Eric Bertrand, Christine Fritsch, Sigrid Diether, George Lambrou, Dieter Muller, Frank Schaeffel, Patrick Schindler, Katrina L. Schmid, Jan van Oostrum, and Hans Voshol
Mol Cell Proteomics (2006) 5(11): 2158-2166

Molecular Interactions between the Specialist Herbivore Manduca sexta (Lepidoptera, Sphingidae) and Its Natural Host Nicotiana attenuata. VII. Changes in the Plant's proteomes
Giri AP, Wunsche H, Mitra S, Zavala JA, Muck A, Svatos A, Baldwin IT.
Plant Physiol Early Edition: published 6-Oct-2006

Proteomic analysis of the mouse mammary gland is a powerful tool to identify novel proteins that are differentially expressed during mammary development
Claire R. Davies, Joanna S. Morris, Matthew R. Griffiths, Martin J. Page, Andrew Pitt, Torsten Stein, Barry A. Gusterson
PROTEOMICS (2006) 6(21): 5694-5704

A Quantitative Results-driven Approach to Analyzing Multisite Protein Phosphorylation: The Phosphate-dependent Phosphorylation Profile of the Transcription Factor Pho4
Francesca Zappacosta, Therese S. Collingwood, Michael J. Huddleston, and Roland S. Annan
Mol Cell Proteomics (2006) 5(11): 2019-2030

Comparative proteomic analysis of extracellular matrix proteins secreted by two types of skin fibroblasts
Delphine Pflieger, Sandrine Chabane, Olivier Gaillard, Bruno Alain Bernard, Patrick Ducoroy, Jean Rossier, Joëlle Vinh
PROTEOMICS (2006) 6(21): 5868-5879

Proteomics of the peroxisome
Saleem RA, Smith JJ, Aitchison JD.
Biochim Biophys Acta Early Edition: published 12-Sep-2006

Enrichment and Identification of Integral Membrane Proteins from Barley Aleurone Layers by Reversed-Phase Chromatography, SDS-PAGE, and LC-MS/MS
Radovan Hynek, Birte Svensson, Ole N rregaard Jensen, Vibeke Barkholt, and Christine Finnie
JOURNAL OF PROTEOME RESEARCH (2006) 5(11): 3105-3113

Proteomic analysis of the E2F1 response in p53-negative cancer cells: New aspects in the regulation of cell survival and death
Zhenpeng Li, Michael Kreutzer, Stefan Mikkat, Nikica Mi?e, Michael O. Glocker, Brigitte M. Pützer
PROTEOMICS (2006) 6(21): 5735-5745

Proteomic Analysis of Seed Dormancy in Arabidopsis
Chibani K, Ali-Rachedi S, Job C, Job D, Jullien M, Grappin P.
Plant Physiol Early Edition: published 6-Oct-2006

Protein expression of lymphocytes in HLA-DR transgenic pigs by a proteomic approach
San-Yuan Huang, Yu-Hui Chen, Shih-Hua Teng, I-Chung Chen, Lin-Lin Ho, Ching-Fu Tu
PROTEOMICS (2006) 6(21): 5815-5825

Hypophosphorylation of the architectural chromatin protein DEK in death-receptor-induced apoptosis revealed by the isotope coded protein label proteomic platform
Anja Tabbert, Ferdinand Kappes, Rolf Knippers, Josef Kellermann, Friedrich Lottspeich, Elisa Ferrando-May
PROTEOMICS (2006) 6(21): 5758-5772

Metal Contamination Effects on Sunflower (Helianthus annuus L.) Growth and Protein Expression in Leaves During Development
Garcia JS, Gratao PL, Azevedo RA, Arruda MA.
J Agric Food Chem (2006) 54(22): 8623-8630

From the genome to the proteome: uncovering peptides in the Apis brain
Hummon AB, Richmond TA, Verleyen P, Baggerman G, Huybrechts J, Ewing MA, Vierstraete E, Rodriguez-Zas SL, Schoofs L, Robinson GE, Sweedler JV.
Science (2006) 314(5799): 647-9

Proteomic and transcriptomic analysis of Arabidopsis seeds: molecular evidence for successive processing of seed proteins and its implication in the stress response to sulfur nutrition
Higashi Y, Hirai MY, Fujiwara T, Naito S, Noji M, Saito K.
Plant J Early Edition: published 19-Oct-2006

Extraction and protein component analysis of venom from the dissected venom glands of Latrodectus tredecimguttatus
Duan ZG, Yan XJ, He XZ, Zhou H, Chen P, Cao R, Xiong JX, Hu WJ, Wang XC, Liang SP.
Comp Biochem Physiol B Biochem Mol Biol Early Edition: published 5-Sep-2006

ProtoBee: Hierarchical classification and annotation of the honey bee proteome
Kaplan N, Linial M.
Genome Res Early Edition: published 25-Oct-2006

Proteomics for the analysis of the Candida albicans biofilm lifestyle
Derek P. Thomas, Stefano P. Bachmann, Jose L. Lopez-Ribot
PROTEOMICS (2006) 6(21): 5795-5804


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Biomedical and clinical applications

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Classifications of ovarian cancer tissues by proteomic patterns
Yi Zhu, Rong Wu, Navneet Sangha, Chul Yoo, Kathleen R. Cho, Kerby A. Shedden, Hidetaka Katabuchi, David M. Lubman
PROTEOMICS (2006) 6(21): 5846-5856

Protein Profiling of Rat Ventral Prostate following Chronic Finasteride Administration: Identification and Localization of a Novel Putative Androgen-regulated Protein
Corinne Cayatte, Catherine Pons, Jean-Marie Guigonis, Jerome Pizzol, Laetitia Elies, Philippe Kennel, David Rouquie, Remi Bars, Bernard Rossi, and Michel Samson
Mol Cell Proteomics (2006) 5(11): 2031-2043

Serial Changes in Urinary Proteome Profile of Membranous Nephropathy: Implications for Pathophysiology and Biomarker Discovery
Heidi Hoi-Yee Ngai, Wai-Hung Sit, Ping-Ping Jiang, Ruo-Jun Xu, Jennifer Man-Fan Wan, and Visith Thongboonkerd
JOURNAL OF PROTEOME RESEARCH (2006) 5(11): 3038-3047

Identification of protein biomarkers in Dupuytren's contracture using surface enhanced laser desorption ionization time-of-flight mass spectrometry (SELDI-TOF-MS)
O'Gorman D, Howard JC, Varallo VM, Cadieux P, Bowley E, McLean K, Pak BJ, Gan BS.
Clin Invest Med (2006) 29(3): 136-45

Preclinical and post-treatment changes in the HCC-associated serum proteome
Ward DG, Cheng Y, N'kontchou G, Thar TT, Barget N, Wei W, Martin A, Beaugrand M, Johnson PJ.
Br J Cancer Early Edition: published 24-Oct-2006

Protein oxidation and lipid peroxidation in brain of subjects with Alzheimer's disease: insights into mechanism of neurodegeneration from redox proteomics
Sultana R, Perluigi M, Butterfield DA.
Antioxid Redox Signal (2006) 8(11-12): 2021-37

Proteome analysis of myocardial tissue following ischemia and reperfusion-Effects of complement inhibition
Buerke M, Schwertz H, Langin T, Buerke U, Prondzinsky R, Platsch H, Richert J, Bomm S, Schmidt M, Hillen H, Lindemann S, Blaschke G, Muller-Werdan U, Werdan K.
Biochim Biophys Acta (2006) 1764(10): 1536-45

Serum markers of hepatocellular carcinoma
Spangenberg HC, Thimme R, Blum HE.
Semin Liver Dis (2006) 26(4): 385-90

Proteomic Analysis of the Cerebrospinal Fluid of Patients with Creutzfeldt-Jakob Disease
Cepek L, Brechlin P, Steinacker P, Mollenhauer B, Klingebiel E, Bibl M, Kretzschmar HA, Wiltfang J, Otto M.
Dement Geriatr Cogn Disord (2006) 23(1): 22-28

Declining Plasma Fibrinogen Alpha Fragment Identifies HER2-Positive Breast Cancer Patients and Reverts to Normal Levels after Surgery
Qian Shi, Lyndsay N. Harris, Xin Lu, Xiaochun Li, Justin Hwang, Robert Gentleman, J. Dirk Iglehart, and Alexander Miron
JOURNAL OF PROTEOME RESEARCH (2006) 5(11): 2947-2955

Dysregulation of Retinoid Transporters Expression in Body Fluids of Schizophrenia Patients
Chunling Wan, Yifeng Yang, Huafang Li, Yujuan La, Hui Zhu, Lei Jiang, Yongshuo Chen, Guoyin Feng, and Lin He
JOURNAL OF PROTEOME RESEARCH (2006) 5(11): 3213-3216

A Chemical Proteomics Approach for the Identification of Accessible Antigens Expressed in Human Kidney Cancer
Vincent Castronovo, David Waltregny, Philippe Kischel, Christoph Roesli, Giuliano Elia, Jascha-N. Rybak, and Dario Neri
Mol Cell Proteomics (2006) 5(11): 2083-2091

Genomics and Proteomics of Bone Cancer
Marguiles AG, Klimberg VS, Bhattacharrya S, Gaddy D, Suva LJ.
Clin Cancer Res (2006) 12(20): 6217s-6221s

Identification and analysis of altered ?1,6-fucosylated glycoproteins associated with hepatocellular carcinoma metastasis
Zhi Dai, Yin-Kun Liu, Jie-Feng Cui, Hua-Li Shen, Jie Chen, Rui-Xia Sun, Yu Zhang, Xin-Wen Zhou, Peng-Yuan Yang, Zhao-You Tang
PROTEOMICS (2006) 6(21): 5857-5867

Comparative proteomic analysis of human leukemic cells with and without inducible expression of leukemogenic AML1-ETO protein
Zhang L, Wang LS, Xu Y, Xia L, Chen WL, Zheng Y, Chen GQ.
Chin J Physiol (2006) 49(4): 182-91

Profiling the breast cancer proteome--the new tool of the future?
Grassl J, Morishita M, Lewis PD, Leonard RC, Thomas G.
Clin Oncol (R Coll Radiol) (2006) 18(8): 581-6

Unraveling the Complex Proteome for Biomarker Discovery in Gastrointestinal and Liver Diseases
Song K, Hanash S.
Gastroenterology Early Edition: published 23-Oct-2006

Autoantigen arrays for multiplex analysis of antibody isotypes
Kareem L. Graham, Maria Vaysberg, Annie Kuo, Paul J. Utz
PROTEOMICS (2006) 6(21): 5720-5724

An Initial Proteomic Analysis of Human Preterm Labor: Placental Membranes
R. Hussain Butt, Maggie W. Y. Lee, S. Ahmadi Pirshahid, Peter S. Backlund,O Stephen Wood, and Jens R. Coorssen
JOURNAL OF PROTEOME RESEARCH (2006) 5(11): 3161-3172

Time-Dependent Plasma Protein Changes in Streptozotocin-Induced Diabetic Rats before and after Fungal Polysaccharide Treatments
Sang Woo Kim, Hye Jin Hwang, Eun Jae Cho, Jung Young Oh, Yu-Mi Baek, Jang Won Choi, and Jong Won Yun
JOURNAL OF PROTEOME RESEARCH (2006) 5(11): 2966-2976

Proteomic analysis of the effects of cocaine on the enhancement of HIV-1 replication in normal human astrocytes (NHA)
Reynolds JL, Mahajan SD, Bindukumar B, Sykes D, Schwartz SA, Nair MP.
Brain Res Early Edition: published 9-Oct-2006

Proteomic Analysis of Plasma Membrane from Hypoxia-Adapted Malignant Melanoma
Luke H. Stockwin, Josip Blonder, Maja A. Bumke, David A. Lucas, King C. Chan, Thomas P. Conrads, Haleem J. Issaq, Timothy D. Veenstra, Dianne L. Newton, and Susanna M. Rybak
JOURNAL OF PROTEOME RESEARCH (2006) 5(11): 2996-3007

LC-MS/MS Analysis of Apical and Basolateral Plasma Membranes of Rat Renal Collecting Duct Cells
Ming-Jiun Yu, Trairak Pisitkun, Guanghui Wang, Rong-Fong Shen, and Mark A. Knepper
Mol Cell Proteomics (2006) 5(11): 2131-2145

Proteomic search for potential diagnostic markers and therapeutic targets for ovarian clear cell adenocarcinoma
Atsushi Morita, Etsuko Miyagi, Hidetaro Yasumitsu, Hiroshi Kawasaki, Hisashi Hirano, Fumiki Hirahara
PROTEOMICS (2006) 6(21): 5880-5890

Sepsis Plasma Protein Profiling with Immunodepletion, Three-Dimensional Liquid Chromatography Tandem Mass Spectrometry, and Spectrum Counting
Zhouxin Shen, Elizabeth J. Want, Wei Chen, William Keating, William Nussbaumer, Richard Moore, Thomas M. Gentle, and Gary Siuzdak
JOURNAL OF PROTEOME RESEARCH (2006) 5(11): 3154-3160

Differential proteome analysis of colon carcinoma cell line SW480 after reconstitution of the tumour suppressor Smad4
Stuhler K, Koper K, Pfeiffer K, Tagariello A, Souquet M, Schwarte-Waldhoff I, Hahn SA, Schmiegel W, Meyer HE.
Anal Bioanal Chem Early Edition: published 17-Oct-2006

Multiplexed Mass Spectrometric Immunoassay in Biomarker Research: A Novel Approach to the Determination of a Myocardial Infarct
Urban A. Kiernan, Dobrin Nedelkov, and Randall W. Nelson
JOURNAL OF PROTEOME RESEARCH (2006) 5(11): 2928-2934

Comparative proteomic profiles of meningioma subtypes
Okamoto H, Li J, Vortmeyer AO, Jaffe H, Lee YS, Glasker S, Sohn TS, Zeng W, Ikejiri B, Proescholdt MA, Mayer C, Weil RJ, Oldfield EH, Zhuang Z.
Cancer Res (2006) 66(20): 10199-204

Maldi-tof serum protein profiling for the detection of breast cancer
Noo ME, Deelder A, Werff M, Ozalp A, Mertens B, Tollenaar R.
Onkologie (2006) 29(11): 501-6

Disease State Differentiation and Identification of Tuberculosis Biomarkers via Native Antigen Array Profiling
Mark J. Sartain, Richard A. Slayden, Krishna K. Singh, Suman Laal, andJohn T. Belisle
Mol Cell Proteomics (2006) 5(11): 2102-2113

Proteomic identification of brain proteins in the canine model of human aging following a long-term treatment with antioxidants and a program of behavioral enrichment: Relevance to Alzheimer's disease
Opii WO, Joshi G, Head E, Milgram NW, Muggenburg BA, Klein JB, Pierce WM, Cotman CW, Butterfield DA.
Neurobiol Aging Early Edition: published 19-Oct-2006

Identification of proteins of potential diagnostic value for bovine paratuberculosis
Donghee Cho, Nackmoon Sung, Michael T. Collins
PROTEOMICS (2006) 6(21): 5785-5794

Identification of Apolipoprotein A-I as a "STOP" Signal for Myopia
Eric Bertrand, Christine Fritsch, Sigrid Diether, George Lambrou, Dieter Muller, Frank Schaeffel, Patrick Schindler, Katrina L. Schmid, Jan van Oostrum, and Hans Voshol
Mol Cell Proteomics (2006) 5(11): 2158-2166

Merger of laser capture microdissection and mass spectrometry: a window into the amyloid plaque proteome
Gozal YM, Cheng D, Duong DM, Lah JJ, Levey AI, Peng J.
Methods Enzymol (2006) 412: 77-93

Proteomic Analysis of Urine in Kidney Transplant Patients with BK Virus Nephropathy
Jahnukainen T, Malehorn D, Sun M, Lyons-Weiler J, Bigbee W, Gupta G, Shapiro R, Randhawa PS, Pelikan R, Hauskrecht M, Vats A.
J Am Soc Nephrol Early Edition: published 11-Oct-2006

The potential of serum proteomics for detection of cancer: promise or only hope?
Krueger KE.
Onkologie (2006) 29(11): 498-9

Changes of Hippocampal Protein Levels during Postnatal Brain Development in the Rat
Rachel Weitzdörfer, Harald Höger, Arnold Pollak, and Gert Lubec
JOURNAL OF PROTEOME RESEARCH (2006) 5(11): 3205-3212

Diagnosis of gastric cancer using decision tree classification of mass spectral data
Su Y, Shen J, Qian H, Ma H, Ji J, Ma H, Ma L, Zhang W, Meng L, Li Z, Wu J, Jin G, Zhang J, Shou C.
Cancer Sci Early Edition: published 17-Oct-2006


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Eukaryotic Cells And Tissues

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Global Profiling of Surface Plasma Membrane Proteome of Oviductal Epithelial Cells
Edita Sostaric, Aristophanes S. Georgiou, Chi H. Wong, Paul F. Watson, William V. Holt, and Alireza Fazeli
JOURNAL OF PROTEOME RESEARCH (2006) 5(11): 3029-3037

Proteome analysis of human follicular fluid
Angelucci S, Ciavardelli D, Di Giuseppe F, Eleuterio E, Sulpizio M, Tiboni GM, Giampietro F, Palumbo P, Di Ilio C.
Biochim Biophys Acta Early Edition: published 14-Sep-2006

Urinary proteomic profiles distinguish between active and inactive lupus nephritis
Mosley K, Tam FW, Edwards RJ, Crozier J, Pusey CD, Lightstone L.
Rheumatology (Oxford) Early Edition: published 17-Oct-2006

Proteomic Analysis of Hypertrophied Myocardial Protein Patterns in Renovascularly Hypertensive and Spontaneously Hypertensive Rats
Si-Gui Zhou, Shu-Feng Zhou, He-Qing Huang, Jian-Wen Chen, Min Huang, and Pei-Qing Liu
JOURNAL OF PROTEOME RESEARCH (2006) 5(11): 2901-2908

Time-Dependent Plasma Protein Changes in Streptozotocin-Induced Diabetic Rats before and after Fungal Polysaccharide Treatments
Sang Woo Kim, Hye Jin Hwang, Eun Jae Cho, Jung Young Oh, Yu-Mi Baek, Jang Won Choi, and Jong Won Yun
JOURNAL OF PROTEOME RESEARCH (2006) 5(11): 2966-2976

Separation and identification of soybean leaf proteins by two-dimensional gel electrophoresis and mass spectrometry
Xu C, Garrett WM, Sullivan J, Caperna TJ, Natarajan S.
Phytochemistry Early Edition: published 12-Oct-2006

Analysis of the S. cerevisiae proteome with PeptideAtlas
King N, Deutsch E, Ranish J, Nesvizhskii A, Eddes J, Mallick P, Eng J, Desiere F, Flory M, Martin D, Kim B, Lee H, Raught B, Aebersold R
Genome Biology (2006) 7(11): R106

Effects of body weight and nutrition on mammary protein expression profiles in Holstein heifers
Daniels KM, Webb KE Jr, McGilliard ML, Meyer MJ, Van Amburgh ME, Akers RM.
J Dairy Sci (2006) 89(11): 4276-88

Disorder and Sequence Repeats in Hub Proteins and Their Implications for Network Evolution
Zsuzsanna Doszt nyi, Jake Chen, A. Keith Dunker, Istv n Simon, and Peter Tompa
JOURNAL OF PROTEOME RESEARCH (2006) 5(11): 2985-2995

Proteomic profiling of murine oocyte maturation
Vitale AM, Calvert ME, Mallavarapu M, Yurttas P, Perlin J, Herr J, Coonrod S.
Mol Reprod Dev Early Edition: published 16-Oct-2006

Analysis of bronchoalveolar lavage fluid proteome from systemic sclerosis patients with or without functional, clinical and radiological signs of lung fibrosis
Fietta AM, Bardoni AM, Salvini R, Passadore I, Morosini M, Cavagna L, Codullo V, Pozzi E, Meloni F, Montecucco C.
Arthritis Res Ther (2006) 8(6): R160

Proteomic analysis of Entamoeba histolytica
Tolstrup J, Krause E, Tannich E, Bruchhaus I.
Parasitology Early Edition: published 11-Oct-2006


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Prokaryotes

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Biomarker Candidate Identification in Yersinia pestis Using Organism-Wide Semiquantitative Proteomics
Kim K. Hixson, Joshua N. Adkins, Scott E. Baker, Ronald J. Moore, Brett A. Chromy, Richard D. Smith, Sandra L. McCutchen-Maloney, and Mary S. Lipton
JOURNAL OF PROTEOME RESEARCH (2006) 5(11): 3008-3017

Detecting Differential and Correlated Protein Expression in Label-Free Shotgun Proteomics
Bing Zhang, Nathan C. VerBerkmoes, Michael A. Langston, Edward Uberbacher, Robert L. Hettich, and Nagiza F. Samatova
JOURNAL OF PROTEOME RESEARCH (2006) 5(11): 2909-2918

Multidimensional Proteomic Analysis of the Soluble Subproteome of the Emerging Nosocomial Pathogen Ochrobactrum anthropi
Robert Leslie James Graham, Catherine E. Pollock, S. Naomi O'Loughlin, Nigel G. Ternan, D. Brent Weatherly, Philip J. Jackson, Rick L. Tarleton, and Geoff McMullan
JOURNAL OF PROTEOME RESEARCH (2006) 5(11): 3145-3153

Characterization of cell wall associated proteins of a Staphylococcus aureus isolated from bovine mastitis case by a proteomic approach
Taverna F, Negri A, Piccinini R, Zecconi A, Nonnis S, Ronchi S, Tedeschi G.
Vet Microbiol Early Edition: published 12-Oct-2006

Characterization of the Outer Membrane Protein Profile from Disease-Related Helicobacter pylori Isolates by Subcellular Fractionation and Nano-LC FT-ICR MS Analysis
Elisabet Carlsohn, Johanna Nyström, Hasse Karlsson, Ann-Mari Svennerholm, and Carol L. Nilsson
JOURNAL OF PROTEOME RESEARCH (2006) 5(11): 3197-3204

Correlation of mRNA expression and protein abundance affected by multiple sequence features related to translational efficiency in Desulfovibrio vulgaris: A quantitative analysis
Nie L, Wu G, Zhang W.
Genetics Early Edition: published 8-Oct-2006

Towards the entire proteome of the model bacterium Bacillus subtilis by gel-based and gel-free approaches
Wolff S, Antelmann H, Albrecht D, Becher D, Bernhardt J, Bron S, Buttner K, van Dijl JM, Eymann C, Otto A, Tam LT, Hecker M.
J Chromatogr B Analyt Technol Biomed Life Sci Early Edition: published 19-Oct-2006

Probing the Structure of the Caulobacter crescentus Ribosome with Chemical Labeling and Mass Spectrometry
Richard L. Beardsley, William E. Running, and James P. Reilly
JOURNAL OF PROTEOME RESEARCH (2006) 5(11): 2935-2946

Comparative Proteome Analysis of Fractions Enriched for Membrane-Associated Proteins from Francisella tularensis Subsp. tularensis and F. tularensis Subsp. holarctica Strains
Ivona Pavkova, Marketa Reichelova, Pär Larsson, Martin Hubalek, Jana Vackova, Ake Forsberg, and Jiri Stulik
JOURNAL OF PROTEOME RESEARCH (2006) 5(11): 3125-3134

Comparative proteomic profiles and the potential markers between Burkholderia pseudomallei and Burkholderia thailandensis
Wongtrakoongate P, Mongkoldhumrongkul N, Chaijan S, Kamchonwongpaisan S, Tungpradabkul S.
Mol Cell Probes Early Edition: published 3-Sep-2006


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Pharmacology and Toxicology

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Metal Contamination Effects on Sunflower (Helianthus annuus L.) Growth and Protein Expression in Leaves During Development
Garcia JS, Gratao PL, Azevedo RA, Arruda MA.
J Agric Food Chem (2006) 54(22): 8623-8630

ROS and protein oxidation in early stages of cytotoxic drug induced apoptosis
England K, 'driscoll CO, Cotter TG.
Free Radic Res (2006) 40(11): 1124-37

Serum, liver, and kidney proteomic analysis for the alloxan-induced type I diabetic mice after insulin gene transfer of naked plasmid through electroporation
Wei-Fei Diao, Wei-Qiang Chen, Yuanyuan Wu, Peng Liu, Xiao-Lei Xie, Shuai Li, Ping-Ping Shen, Jianguo Ji
PROTEOMICS (2006) 6(21): 5837-5845

Chapter 9 Assessment of genome and proteome profiles in cocaine abuse
Hemby SE.
Prog Brain Res (2006) 158: 173-95


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Protein Array

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Reverse phase protein array: validation of a novel proteomic technology and utility for analysis of primary leukemia specimens and hematopoietic stem cells
Tibes R, Qiu Y, Lu Y, Hennessy B, Andreeff M, Mills GB, Kornblau SM.
Mol Cancer Ther (2006) 5(10): 2512-21

Proteome-on-a-chip: Mirage, or on the horizon?
Freire SL, Wheeler AR.
Lab Chip (2006) 6(11): 1415-23

ProCAT: a data analysis approach for protein microarrays
Zhu X, Gerstein M, Snyder M
Genome Biology (2006) 7(11): R110

Protein array staining methods for undefined protein content, manufacturing quality control, and performance validation
Schabacker DS, Stefanovska I, Gavin I, Pedrak C, Chandler DP.
Anal Biochem Early Edition: published 22-Sep-2006


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Protein Characterization / PTMs

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Modulation of Testicular Receptor 4 Activity by Mitogen-activated Protein Kinase-mediated Phosphorylation
M. D. Mostaqul Huq, Pawan Gupta, Nien-Pei Tsai, and Li-Na Wei
Mol Cell Proteomics (2006) 5(11): 2072-2082

Mass Spectrometry-Based Glycoproteomic Approach Involving Lysine Derivatization for Structural Characterization of Recombinant Human Erythropoietin
Mario Cindri , Laura Bindila, Tina epo, and Jasna Peter-Katalini
JOURNAL OF PROTEOME RESEARCH (2006) 5(11): 3066-3076

Glycoproteomics based on tandem mass spectrometry of glycopeptides
Wuhrer M, Catalina MI, Deelder AM, Hokke CH.
J Chromatogr B Analyt Technol Biomed Life Sci Early Edition: published 16-Oct-2006

Large Scale Identification and Quantitative Profiling of Phosphoproteins Expressed during Seed Filling in Oilseed Rape
Ganesh Kumar Agrawal and Jay J. Thelen
Mol Cell Proteomics (2006) 5(11): 2044-2059

Enrichment of Phosphopeptides by Fe3+-Immobilized Mesoporous Nanoparticles of MCM-41 for MALDI and Nano-LC-MS/MS Analysis
Chensong Pan, Mingliang Ye, Yuge Liu, Shun Feng, Xiaogang Jiang, Guanghui Han, Junjie Zhu, and Hanfa Zou
JOURNAL OF PROTEOME RESEARCH (2006) 5(11): 3114-3124

A Quantitative Results-driven Approach to Analyzing Multisite Protein Phosphorylation: The Phosphate-dependent Phosphorylation Profile of the Transcription Factor Pho4
Francesca Zappacosta, Therese S. Collingwood, Michael J. Huddleston, and Roland S. Annan
Mol Cell Proteomics (2006) 5(11): 2019-2030

Proteomic inventory of "Anchorless" proteins on the colon adenocarcinoma cell surface
Tjalsma H, Pluk W, van den Heuvel LP, Peters WH, Roelofs R, Swinkels DW.
Biochim Biophys Acta Early Edition: published 12-Sep-2006

Phosphoproteomics of human platelets: A quest for novel activation pathways
Zahedi RP, Begonja AJ, Gambaryan S, Sickmann A.
Biochim Biophys Acta Early Edition: published 7-Sep-2006

Dissecting the ubiquitin pathway by mass spectrometry
Xu P, Peng J.
Biochim Biophys Acta Early Edition: published 14-Sep-2006

ROS and protein oxidation in early stages of cytotoxic drug induced apoptosis
England K, 'driscoll CO, Cotter TG.
Free Radic Res (2006) 40(11): 1124-37


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Protein-protein interaction

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Solid phase proteomics: Dramatic reinforcement of very weak protein-protein interactions
Fuentes M, Mateo C, Pessela BC, Batalla P, Fernandez-Lafuente R, Guisan JM.
J Chromatogr B Analyt Technol Biomed Life Sci Early Edition: published 9-Oct-2006

An efficient tandem affinity purification procedure for interaction proteomics in mammalian cells
Burckstummer T, Bennett KL, Preradovic A, Schutze G, Hantschel O, Superti-Furga G, Bauch A.
Nat Methods Early Edition: published 22-Oct-2006

Disorder and Sequence Repeats in Hub Proteins and Their Implications for Network Evolution
Zsuzsanna Doszt nyi, Jake Chen, A. Keith Dunker, Istv n Simon, and Peter Tompa
JOURNAL OF PROTEOME RESEARCH (2006) 5(11): 2985-2995


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Quantitation

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Trypsin is the primary mechanism by which the (18)O isotopic label is lost in quantitative proteomic studies
Angel PM, Orlando R.
Anal Biochem Early Edition: published 22-Sep-2006

Quantitative proteome analysis using D-labeled N-ethylmaleimide and (13)C-labeled iodoacetanilide by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry
Kurono S, Kurono T, Komori N, Niwayama S, Matsumoto H.
Bioorg Med Chem Early Edition: published 13-Oct-2006

Hypophosphorylation of the architectural chromatin protein DEK in death-receptor-induced apoptosis revealed by the isotope coded protein label proteomic platform
Anja Tabbert, Ferdinand Kappes, Rolf Knippers, Josef Kellermann, Friedrich Lottspeich, Elisa Ferrando-May
PROTEOMICS (2006) 6(21): 5758-5772


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Review

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Proteomics approaches to the systems biology of cardiovascular diseases
Drake TA, Ping P.
J Lipid Res Early Edition: published 25-Oct-2006

Phosphoproteomics of human platelets: A quest for novel activation pathways
Zahedi RP, Begonja AJ, Gambaryan S, Sickmann A.
Biochim Biophys Acta Early Edition: published 7-Sep-2006

PROTEOMICS - Clinical Applications Call for Reviews
Michael J. Dunn
PROTEOMICS (2006) 6(21): 5675

New Developments in Profiling and Imaging of Proteins from Tissue Sections by MALDI Mass Spectrometry
Pierre Chaurand, Jeremy L. Norris, D. Shannon Cornett, James A. Mobley, and Richard M. Caprioli
JOURNAL OF PROTEOME RESEARCH (2006) 5(11): 2889-2900

Glycoproteomics based on tandem mass spectrometry of glycopeptides
Wuhrer M, Catalina MI, Deelder AM, Hokke CH.
J Chromatogr B Analyt Technol Biomed Life Sci Early Edition: published 16-Oct-2006


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Methodology

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Comparison of Hydroxylated Print Additives on Antibody Microarray Performance
Peng Wu and David W. Grainger
JOURNAL OF PROTEOME RESEARCH (2006) 5(11): 2956-2965

Chapter 3 Methods for proteomics in neuroscience
Tannu NS, Hemby SE.
Prog Brain Res (2006) 158: 41-82

Interactive Feature Finding in Liquid Chromatography Mass Spectrometry Data
David Clifford, Michael Buckley, Kim Y. C. Fung, and Leah Cosgrove
JOURNAL OF PROTEOME RESEARCH (2006) 5(11): 3179-3185

Probing the Structure of the Caulobacter crescentus Ribosome with Chemical Labeling and Mass Spectrometry
Richard L. Beardsley, William E. Running, and James P. Reilly
JOURNAL OF PROTEOME RESEARCH (2006) 5(11): 2935-2946

Enhancement of MALDI-MS Spectra of C-Terminal Peptides by the Modification of Proteins via an Active Ester Generated in Situ from an Oxazolone
Minoru Yamaguchi, Mutsumi Oka, Kimiko Nishida, Mayu Ishida, Ayako Hamazaki, Hiroki Kuyama, Eiji Ando, Taka-aki Okamura, Norikazu Ueyama, Shigemi Norioka, Osamu Nishimura, Susumu Tsunasawa, and Takashi Nakazawa
ANALYTICAL CHEMISTRY (2006) 78(22): 7861-7869

A sample preparation process for LC-MS/MS analysis of total protein drug concentrations in monkey plasma samples with antibody
Ji QC, Rodila R, El-Shourbagy TA.
J Chromatogr B Analyt Technol Biomed Life Sci Early Edition: published 17-Oct-2006

Characterisation of organellar proteomes: A guide to subcellular proteomic fractionation and analysis
Edwin Ho, Andrew Hayen, Marc R. Wilkins
PROTEOMICS (2006) 6(21): 5746-5757

Chapter 1 Tissue preparation and banking
Webster MJ.
Prog Brain Res (2006) 158: 3-14

Fast track to a phosphoprotein sketch - MALDI-TOF characterization of TLC-based tryptic phosphopeptide maps at femtomolar detection sensitivity
Vitaly Kochin, Susumu Y. Imanishi, John E. Eriksson
PROTEOMICS (2006) 6(21): 5676-5682

Detecting Differential and Correlated Protein Expression in Label-Free Shotgun Proteomics
Bing Zhang, Nathan C. VerBerkmoes, Michael A. Langston, Edward Uberbacher, Robert L. Hettich, and Nagiza F. Samatova
JOURNAL OF PROTEOME RESEARCH (2006) 5(11): 2909-2918

Evaluation of Multiprotein Immunoaffinity Subtraction for Plasma Proteomics and Candidate Biomarker Discovery Using Mass Spectrometry
Tao Liu, Wei-Jun Qian, Heather M. Mottaz, Marina A. Gritsenko, Angela D. Norbeck, Ronald J. Moore, Samuel O. Purvine, David G. Camp, II, and Richard D. Smith
Mol Cell Proteomics (2006) 5(11): 2167-2174

In vivo detection of secreted proteins from wounded skin using capillary ultrafiltration probes and mass spectrometric proteomics
Chun-Ming Huang, Chao-Cheng Wang, Stephen Barnes, Craig A. Elmets
PROTEOMICS (2006) 6(21): 5805-5814

Capillary Array Reversed-Phase Liquid Chromatography-Based Multidimensional Separation System Coupled with MALDI-TOF-TOF-MS Detection for High-Throughput Proteome Analysis
Xue Gu, Chunhui Deng, Guoquan Yan, and Xiangmin Zhang
JOURNAL OF PROTEOME RESEARCH (2006) 5(11): 3186-3196

Protein processing and other modifications analyzed by diagonal peptide chromatography
Gevaert K, Van Damme P, Ghesquiere B, Vandekerckhove J.
Biochim Biophys Acta Early Edition: published 14-Sep-2006

An efficient tandem affinity purification procedure for interaction proteomics in mammalian cells
Burckstummer T, Bennett KL, Preradovic A, Schutze G, Hantschel O, Superti-Furga G, Bauch A.
Nat Methods Early Edition: published 22-Oct-2006

A Differential Cytolocalization Assay for Analysis of Macromolecular Assemblies in the Eukaryotic Cytoplasm
Daniel Blanchard, Harald Hutter, Jamie Fleenor, and Andrew Fire
Mol Cell Proteomics (2006) 5(11): 2175-2184

Proteome-on-a-chip: Mirage, or on the horizon?
Freire SL, Wheeler AR.
Lab Chip (2006) 6(11): 1415-23

Trypsin is the primary mechanism by which the (18)O isotopic label is lost in quantitative proteomic studies
Angel PM, Orlando R.
Anal Biochem Early Edition: published 22-Sep-2006

Reverse phase protein array: validation of a novel proteomic technology and utility for analysis of primary leukemia specimens and hematopoietic stem cells
Tibes R, Qiu Y, Lu Y, Hennessy B, Andreeff M, Mills GB, Kornblau SM.
Mol Cancer Ther (2006) 5(10): 2512-21

Generation of Ultrahigh Peak Capacity LC Separations via Elevated Temperatures and High Linear Mobile-Phase Velocities
Plumb RS, Rainville P, Smith BW, Johnson KA, Castro-Perez J, Wilson ID, Nicholson JK.
Anal Chem (2006) 78(20): 7278-7283

Sample pooling in 2-D gel electrophoresis: A new approach to reduce nonspecific expression background
Weinkauf M, Hiddemann W, Dreyling M.
Electrophoresis Early Edition: published 25-Oct-2006

A matrix-assisted laser desorption/ionization compatible reagent for tagging tryptophan residues
Li C, Gawandi V, Protos A, Phillips RS, Amster IJ.
Eur J Mass Spectrom (Chichester Eng) (2006) 12(4): 213-21

Optimization of paper bridge loading for 2-DE analysis in the basic pH region: Application to the mitochondrial subproteome
Lesley A. Kane, Christina K. Yung, Giulio Agnetti, Irina Neverova, Jennifer E. Van Eyk
PROTEOMICS (2006) 6(21): 5683-5687

Enrichment and Identification of Integral Membrane Proteins from Barley Aleurone Layers by Reversed-Phase Chromatography, SDS-PAGE, and LC-MS/MS
Radovan Hynek, Birte Svensson, Ole N rregaard Jensen, Vibeke Barkholt, and Christine Finnie
JOURNAL OF PROTEOME RESEARCH (2006) 5(11): 3105-3113

Performance Evaluation of Existing De Novo Sequencing Algorithms
Sergey Pevtsov, Irina Fedulova, Hamid Mirzaei, Charles Buck, and Xiang Zhang
JOURNAL OF PROTEOME RESEARCH (2006) 5(11): 3018-3028

Toward Plasma Proteome Profiling with Ion Mobility-Mass Spectrometry
Stephen J. Valentine, Manolo D. Plasencia, Xiaoyun Liu, Meera Krishnan, Stephen Naylor, Harold R. Udseth, Richard D. Smith, and David E. Clemmer
JOURNAL OF PROTEOME RESEARCH (2006) 5(11): 2977-2984

Antigen-epitope retrieval to facilitate proteomic analysis of formalin-fixed archival brain tissue
Rahimi F, Shepherd CE, Halliday GM, Geczy CL, Raftery MJ.
Anal Chem (2006) 78(20): 7216-21

Expressed Peptide Tags: An Additional Layer of Data for Genome Annotation
Alon Savidor, Ryan S. Donahoo, Oscar Hurtado-Gonzales, Nathan C. VerBerkmoes, Manesh B. Shah, Kurt H. Lamour, and W. Hayes McDonald
JOURNAL OF PROTEOME RESEARCH (2006) 5(11): 3048-3058

Proteome Resolution by Two-Dimensional Gel Electrophoresis Varies with the Commercial Source of IPG Strips
Regan C. Taylor and Jens R. Coorssen
JOURNAL OF PROTEOME RESEARCH (2006) 5(11): 2919-2927

Solid phase proteomics: Dramatic reinforcement of very weak protein-protein interactions
Fuentes M, Mateo C, Pessela BC, Batalla P, Fernandez-Lafuente R, Guisan JM.
J Chromatogr B Analyt Technol Biomed Life Sci Early Edition: published 9-Oct-2006

Multiplexed Mass Spectrometric Immunoassay in Biomarker Research: A Novel Approach to the Determination of a Myocardial Infarct
Urban A. Kiernan, Dobrin Nedelkov, and Randall W. Nelson
JOURNAL OF PROTEOME RESEARCH (2006) 5(11): 2928-2934

An efficient protein preparation for proteomic analysis of developing cotton fibers by 2-DE
Yao Y, Yang YW, Liu JY.
Electrophoresis Early Edition: published 23-Oct-2006

Differential Analysis of Saccharomyces cerevisiae Mitochondria by Free Flow Electrophoresis
Hans Zischka, Ralf J. Braun, Enrico P. Marantidis, Dietmute Buringer, Carsten Bornhovd, Stefanie M. Hauck, Oliver Demmer, Christian J. Gloeckner, Andreas S. Reichert, Frank Madeo, and Marius Ueffing
Mol Cell Proteomics (2006) 5(11): 2185-2200

Biomarker discovery by proteomics: challenges not only for the analytical chemist
Horvatovich P, Govorukhina N, Bischoff R.
Analyst (2006) 131(11): 1193-6

Quantitative proteome analysis using D-labeled N-ethylmaleimide and (13)C-labeled iodoacetanilide by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry
Kurono S, Kurono T, Komori N, Niwayama S, Matsumoto H.
Bioorg Med Chem Early Edition: published 13-Oct-2006

New Developments in Profiling and Imaging of Proteins from Tissue Sections by MALDI Mass Spectrometry
Pierre Chaurand, Jeremy L. Norris, D. Shannon Cornett, James A. Mobley, and Richard M. Caprioli
JOURNAL OF PROTEOME RESEARCH (2006) 5(11): 2889-2900

Simultaneous Mass Analysis of Positive and Negative Ions Using a Dual-Polarity Time-of-Flight Mass Spectrometer
Shang-Ting Tsai, Chiu Wen Chen, Ling Chu Lora Huang, Min-Chia Huang, Chung-Hsuan Chen, and Yi-Sheng Wang
ANALYTICAL CHEMISTRY (2006) 78(22): 7729-7734


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Meeting

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Proteomics gets faster and smarter
Hannah Johnson and Simon J Gaskell
Genome Biology (2006) 7(11): 331


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