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SPS' DigestIssue 38, 2-Feb-2007 |
Computational Tools for Modeling Protein Networks
Bergmann, Frank T.; Vallabhajosyula, Ravishankar R.; Sauro, Herbert M.
Current Proteomics (2006) 3(3): 181-197
Mass spectrometry proteomic diagnosis: enacting the double cross-validatory paradigm
Mertens BJ, Noo ME, Tollenaar RA, Deelder AM.
J Comput Biol (2006) 13(9): 1591-605
SYSTOMONAS--an integrated database for systems biology analysis of Pseudomonas
Choi C, Munch R, Leupold S, Klein J, Siegel I, Thielen B, Benkert B, Kucklick M, Schobert M, Barthelmes J, Ebeling C, Haddad I, Scheer M, Grote A, Hiller K, Bunk B, Schreiber K, Retter I, Schomburg D, Jahn D.
Nucl Acids Res (2007) 35(Database issue): D533-7
AYUMS: an algorithm for completely automatic quantitation based on LC-MS/MS proteome data and its application to the analysis of signal transduction
Saito A, Nagasaki M, Oyama M, Kozuka-Hata H, Semba K, Sugano S, Yamamoto T, Miyano S.
BMC Bioinformatics (2007) 8(1): 15
An informatic pipeline for the data capture and submission of quantitative proteomic data using iTRAQ
Siepen J, Swainston N, Jones A, Hart S, Hermjakob H, Jones P, Hubbard S
Proteome Science (2007) 5: 4
Analysis and Understanding of High-Dimensionality Data by Means of Multivariate Data Analysis
Norden B, Broberg P, Lindberg C, Plymoth A.
Chem Biodivers (2005) 2(11): 1487-1494
Intrinsic Disorder and Functional Proteomics
Radivojac P, Iakoucheva LM, Oldfield CJ, Obradovic Z, Uversky VN, Dunker AK.
Biophys J Early Edition: published 8-Dec-2006
Computational proteomics of biomolecular interactions in the sequence and structure space of the tyrosine kinome: Deciphering the molecular basis of the kinase inhibitors selectivity
Verkhivker GM.
Proteins Early Edition: published 15-Dec-2006
Quantitation with virtual expert mass spectrometrist
Gruhler A, Matthiesen R.
Methods Mol Biol (2006) 367: 139-52
Towards alignment independent quantitative assessment of homology detection
Apatoff A, Kim E, Kliger Y.
PLoS ONE (2006) 1: e113.
Automated mass correction and data interpretation for protein open-access liquid chromatography-mass spectrometry
Craig D. Wagner, John T. Hall, Wendy L. White, Luke A. D. Miller, Jon D. Williams
Journal of Mass Spectrometry (2007) 42(2): 139-149
Methods for peptide identification by spectral comparison
Liu J, Bell A, Bergeron J, Yanofsky C, Carrillo B, Beaudrie C, Kearney R
Proteome Science (2007) 5: 3
Model-driven user interfaces for bioinformatics data resources: regenerating the wheel as an alternative to reinventing it
Garwood K, Garwood C, Hedeler C, Griffiths T, Swainston N, Oliver SG, Paton NW.
BMC Bioinformatics (2006) 7(1): 532
Evolution of proteomes: Fundamental signatures and global trends in amino acid compositions
Tekaia F, Yeramian E.
BMC Genomics (2006) 7(1): 307
Useful mass spectrometry programs freely available on the internet
Matthiesen R.
Methods Mol Biol (2006) 367: 303-6
Identification of proteins directly from tissue: in situ tryptic digestions coupled with imaging mass spectrometry
M. Reid Groseclose, Malin Andersson, William M. Hardesty, Richard M. Caprioli
Journal of Mass Spectrometry (2007) 42(2): 254-262
ChromAlign: A Two-Step Algorithmic Procedure for Time Alignment of Three-Dimensional LC-MS Chromatographic Surfaces
Rovshan G. Sadygov, Fernando Martin Maroto, and Andreas F. R. Hühmer
ANALYTICAL CHEMISTRY (2006) 78(24): 8207-8217
Virtual Expert Mass Spectrometrist v3.0: An Integrated Tool for Proteome Analysis
Matthiesen R.
Methods Mol Biol (2006) 367: 121-38
Improving gene annotation using peptide mass spectrometry
Tanner S, Shen Z, Ng J, Florea L, Guigo R, Briggs SP, Bafna V.
Genome Res Early Edition: published 22-Dec-2006
hORFeome v3.1: A resource of human open reading frames representing over 10,000 human genes
Lamesch P, Li N, Milstein S, Fan C, Hao T, Szabo G, Hu Z, Venkatesan K, Bethel G, Martin P, Rogers J, Lawlor S, McLaren S, Dricot A, Borick H, Cusick ME, Vandenhaute J, Dunham I, Hill DE, Vidal M.
Genomics Early Edition: published 4-Jan-2007
Annotating the human proteome: Beyond establishing a parts list
Mueller M, Martens L, Apweiler R.
Biochim Biophys Acta Early Edition: published 30-Nov-2006
Mass measurement accuracy in analyses of highly complex mixtures based upon multidimensional recalibration
Tolmachev AV, Monroe ME, Jaitly N, Petyuk VA, Adkins JN, Smith RD.
Anal Chem (2006) 78(24): 8374-85
cTrans: Generating polypeptide databases from cDNA sequences
Haibin Xu, Liming Yang, Pei Xu, Ye Tao, Zhengqiang Ma
PROTEOMICS (2007) 7(2): 177-179
Organization of Proteomics Data With YassDB
Thomsen AL, Laukens K, Matthiesen R, Jensen ON.
Methods Mol Biol (2006) 367: 271-88
Prediction of Error Associated with False-Positive Rate Determination for Peptide Identification in Large-Scale Proteomics Experiments Using a Combined Reverse and Forward Peptide Sequence Database Strategy
Edward L. Huttlin, Adrian D. Hegeman, Amy C. Harms, and Michael R. Sussman
JOURNAL OF PROTEOME RESEARCH (2007) 6(1): 392-398
Protein identification by tandem mass spectrometry and sequence database searching
Nesvizhskii AI.
Methods Mol Biol (2006) 367: 87-120
Assessment of Hierarchical Clustering Methodologies for Proteomic Data Mining
Bruno Meunier, Emilie Dumas, Isabelle Piec, Daniel Béchet, Michel Hébraud, and Jean-François Hocquette
JOURNAL OF PROTEOME RESEARCH (2007) 6(1): 358-366
Multivariate analysis approach to the plasma protein profile of patients with advanced colorectal cancer
Eugenio Ragazzi, Salvatore Pucciarelli, Roberta Seraglia, Laura Molin, Marco Agostini, Mario Lise, Pietro Traldi, Donato Nitti
Journal of Mass Spectrometry (2006) 41(12): 1546-1553
Prediction of Missed Cleavage Sites in Tryptic Peptides Aids Protein Identification in Proteomics
Jennifer A. Siepen, Emma-Jayne Keevil, David Knight, and Simon J. Hubbard
JOURNAL OF PROTEOME RESEARCH (2007) 6(1): 399-408
Proteomic data exchange and storage: the need for common standards and public repositories
Orchard S, Jones P, Taylor C, Zhu W, Julian RK, Hermjakob H, Apweiler R.
Methods Mol Biol (2006) 367: 261-70
Proteomic data exchange and storage: using proteios
Garden P, Alm R.
Methods Mol Biol (2006) 367: 241-60
The protein network as a tool for finding novel drug targets
Strong M, Eisenberg D.
Prog Drug Res (2007) 64: 191: 193-215
Ankyrin repeat and SOCS box containing protein ASB-9 targets creatine kinase B for degradation
Debrincat MA, Zhang JG, Willson TA, Silke J, Connolly LM, Simpson RJ, Alexander WS, Nicola NA, Kile BT, Hilton DJ.
J Biol Chem Early Edition: published 5-Dec-2006
Mass Spectrometric Mapping of Linker Histone H1 Variants Reveals Multiple Acetylations, Methylations, and Phosphorylation as Well as Differences between Cell Culture and Tissue
Jacek R. Wisniewski, Alexandre Zougman, Sonja Kruger, and Matthias Mann
Mol Cell Proteomics (2007) 6(1): 72-87
Functional Proteome Analysis of the Banana Plant (Musa spp.) Using de Novo Sequence Analysis of Derivatized Peptides
Bart Samyn, Kjell Sergeant, Sebastien Carpentier, Griet Debyser, Bart Panis, Rony Swennen, and Jozef Van Beeumen
JOURNAL OF PROTEOME RESEARCH (2007) 6(1): 70-80
Transcriptome and proteome profiling to understanding the biology of high productivity CHO cells
Nissom PM, Sanny A, Kok YJ, Hiang YT, Chuah SH, Shing TK, Lee YY, Wong KT, Hu WS, Sim MY, Philp R.
Mol Biotechnol (2006) 34(2): 125-40
Identification of Proteomic Changes During Differentiation of Adult Mouse Subventricular Zone Progenitor Cells
Salim K, Guest PC, Skynner HA, Bilsland JG, Bonnert TP, McAllister G, Munoz-Sanjuan I.
Stem Cells Dev Early Edition: published 1-Jan-2007
A hormone and proteome approach to picturing the initial metabolic events during Plasmodiophora brassicae infection on Arabidopsis
Devos S, Laukens K, Deckers P, Van Der Straeten D, Beeckman T, Inze D, Van Onckelen H, Witters E, Prinsen E.
Mol Plant Microbe Interact (2006) 19(12): 1431-43
Investigation of hormone activity in butterfly imaginal wing discs by protein expression pattern changes
Cieslak A, Vogler AP, Lafranchi-Tristem N, Dunn MJ, Westbrook JA.
Electrophoresis Early Edition: published 16-Jan-2007
Heat shock protein 60 or 70 activates NOS I- and inhibits NOS II-associated signaling, and depresses mitochondrial apoptotic cascade during brain stem death
Y H Chan J, Cheng HL, L J Chou J, C H Li F, Dai KY, H H Chan S, Y W Chang A.
J Biol Chem Early Edition: published 7-Dec-2006
Extraction of wheat endosperm proteins for proteome analysis
Hurkman WJ, Tanaka CK.
J Chromatogr B Analyt Technol Biomed Life Sci Early Edition: published 8-Dec-2006
A proteomic approach to study flesh browning in stored 'conference' pears
Pedreschi R, Vanstreels E, Carpentier S, Robben J, Noben JP, Nicolai B.
Commun Agric Appl Biol Sci (2006) 71(1): 275-80
Banana (Musa spp.) as a model to study the meristem proteome: Acclimation to osmotic stress
Sebastien C. Carpentier, Erwin Witters, Kris Laukens, Harry Van Onckelen, Rony Swennen, Bart Panis
PROTEOMICS (2007) 7(1): 92-105
A systems biology analysis of the Drosophila phagosome
Stuart LM, Boulais J, Charriere GM, Hennessy EJ, Brunet S, Jutras I, Goyette G, Rondeau C, Letarte S, Huang H, Ye P, Morales F, Kocks C, Bader JS, Desjardins M, Ezekowitz RA.
Nature Early Edition: published 6-Dec-2006
Prenatal TCDD exposure predisposes for mammary cancer in rats
Jenkins S, Rowell C, Wang J, Lamartiniere CA.
Reprod Toxicol Early Edition: published 10-Nov-2006
Extracellular glycosylphosphatidylinositol-anchored mannoproteins and proteases of Cryptococcus neoformans
Eigenheer RA, Jin Lee Y, Blumwald E, Phinney BS, Gelli A.
FEMS Yeast Res Early Edition: published 17-Jan-2007
A proteomic approach to the investigation of early events involved in vascular smooth muscle cell activation
Boccardi C, Cecchettini A, Caselli A, Camici G, Evangelista M, Mercatanti A, Rainaldi G, Citti L.
Cell Tissue Res Early Edition: published 10-Jan-2007
Proteomics analysis of the Francisella tularensis LVS response to iron restriction: induction of the F. tularensis pathogenicity island proteins IglABC
Lenco J, Hubalek M, Larsson P, Fucikova A, Brychta M, Macela A, Stulik J.
FEMS Microbiol Lett Early Edition: published 15-Jan-2007
Protein Expression Profiles in the Epidermis of Cyclooxygenase-2 Transgenic Mice by 2-Dimensional Gel Electrophoresis and Mass Spectrometry
Jianjun Shen, Amy Pavone, Carol Mikulec, Sean C. Hensley, Angelina Traner, Thom K. Chang, Maria D. Person, and Susan M. Fischer
JOURNAL OF PROTEOME RESEARCH (2007) 6(1): 273-286
Identification of proteins interacting with the catalytic subunit of PP2A by proteomics
Won-Jeong Lee, Dong-Uk Kim, Mi-Young Lee, Kang-Yell Choi
PROTEOMICS (2007) 7(2): 206-214
Multivariable Difference Gel Electrophoresis and Mass Spectrometry: A Case Study on Transforming Growth Factor-{beta} and ERBB2 Signaling
David B. Friedman, Shizhen E. Wang, Corbin W. Whitwell, Richard M. Caprioli, and Carlos L. Arteaga
Mol Cell Proteomics (2007) 6(1): 150-169
A Comprehensive Analysis of the 14-3-3 Interactome in Barley Leaves Using a Complementary Proteomics and Two-hybrid Approach
Schoonheim PJ, Veiga H, da Costa Pereira D, Friso G, van Wijk KJ, de Boer AH.
Plant Physiol Early Edition: published 15-Dec-2006
Histone H4 N-Terminal Acetylation in Kasumi-1 Cells Treated with Depsipeptide Determined by Acetic Acid-Urea Polyacrylamide Gel Electrophoresis, Amino Acid Coded Mass Tagging, and Mass Spectrometry
Liwen Zhang, Xiaodan Su, Shujun Liu, Amy R. Knapp, Mark R. Parthun, Guido Marcucci, and Michael A. Freitas
JOURNAL OF PROTEOME RESEARCH (2007) 6(1): 81-88
Proteome and sugar analysis of abiotic stress underlying cryopreservation in potato
Criel B, Hausman F, Oufir M, Swennen R, Panis B, Renaut J.
Commun Agric Appl Biol Sci (2006) 71(1): 3-6
Comparison of the Proteome of Isoniazid-Resistant and -Susceptible Strains of Mycobacterium tuberculosis
Jiang X, Zhang W, Gao F, Huang Y, Lv C, Wang H.
Microb Drug Resist (2006) 12(4): 231-8
Morphine Administration Alters the Profile of Hippocampal Postsynaptic Density-associated Proteins: A Proteomics Study Focusing on Endocytic Proteins
Jose A. Moron, Noura S. Abul-Husn, Raphael Rozenfeld, Georgia Dolios, Rong Wang, and Lakshmi A. Devi
Mol Cell Proteomics (2007) 6(1): 29-42
Proteomic Response to Intracellular Proteins of Monascus pilosus Grown under Phosphate-Limited Complex Medium with Different Growth Rates and Pigment Production
Lin WY, Ting YC, Pan TM.
J Agric Food Chem (2007) 55(2): 467-74
Proteome and transcriptome analysis of 5-fluoro-2'-deoxyuridine-induced cell death mechanisms
Sato A, Miyazaki E, Satake A, Hiramoto A, Hiraoka O, Miyake T, Kim HS, Wataya Y.
Nucleic Acids Symp Ser (Oxf) (2006) (50): 101-2
Proteome Analysis of Plant-Virus Interactome: Comprehensive Data for Virus Multiplication Inside Their Hosts
Jean Paul Brizard, Christine Carapito, Francois Delalande, Alain Van Dorsselaer, and Christophe Brugidou
Mol Cell Proteomics (2006) 5(12): 2279-2297
Cyclin I and p53 are differentially expressed during the terminal differentiation of the postnatal mouse heart
Ye Liu, Mei Kuen Tang, Dong Qing Cai, Ming Li, Wan Man Wong, Pak Ham Chow, Kenneth K. H. Lee
PROTEOMICS (2007) 7(1): 23-32
Proteome Profile of Cytosolic Component of Zebrafish Liver Generated by LC-ESI MS/MS Combined with Trypsin Digestion and Microwave-Assisted Acid Hydrolysis
Nan Wang, Lauren MacKenzie, Andrea G. De Souza, Hongying Zhong, Greg Goss, and Liang Li
JOURNAL OF PROTEOME RESEARCH (2007) 6(1): 263-272
A proteomics approach for identifying osmotic-stress-related proteins in rice
Zang X, Komatsu S.
Phytochemistry Early Edition: published 12-Dec-2006
Quantitative Comparison of Caste Differences in Honeybee Hemolymph
Queenie W. T. Chan, Charles G. Howes, and Leonard J. Foster
Mol Cell Proteomics (2006) 5(12): 2252-2262
Proteome analysis of heat shock protein expression in Pseudomonas alcaligenes NCIMB 9867 in response to gentisate exposure and elevated growth temperature
Zhao B, Yeo CC, Tan CL, Poh CL.
Biotechnol Bioeng Early Edition: published 5-Dec-2006
2-DE profiling of GDNF overexpression-related proteome changes in differentiating ST14A rat progenitor cells
Raimund Hoffrogge, Susanne Beyer, Rayk Hübner, Stefan Mikkat, Eilhard Mix, Christian Scharf, Ulf Schmitz, Stefan Pauleweit, Matthias Berth, Igor Z. Zubrzycki, Hilmar Christoph, Jens Pahnke, Olaf Wolkenhauer, Adelinde Uhrmacher, Uwe Völker, Arndt Rolfs
PROTEOMICS (2007) 7(1): 33-46
Identification of Proinflammatory Flagellin Proteins in Supernatants of Vibrio cholerae O1 by Proteomics Analysis
Juan Xicohtencatl-Cortes, Sean Lyons, Adriana P. Chaparro, Diana R. Hernandez, Zeus Saldana, Maria A. Ledesma, Maria A. Rendon, Andrew T. Gewirtz, Karl E. Klose, and Jorge A. Giron
Mol Cell Proteomics (2006) 5(12): 2374-2383
Conifer defense against insects: Proteome analysis of Sitka spruce (Picea sitchensis) bark induced by mechanical wounding or feeding by white pine weevils (Pissodes strobi)
Dustin Lippert, Sunita Chowrira, Steven Gregory Ralph, Jun Zhuang, Dana Aeschliman, Carol Ritland, Kermit Ritland, Jörg Bohlmann
PROTEOMICS (2007) 7(2): 248-270
Proteomics Fingerprinting of Phagosome Maturation and Evidence for the Role of a G{alpha} during Uptake
Daniel Gotthardt, Vincent Blancheteau, Armin Bosserhoff, Thomas Ruppert, Mauro Delorenzi, and Thierry Soldati
Mol Cell Proteomics (2006) 5(12): 2228-2243
Genome-Wide Proteomics of Natronomonas pharaonis
Kosta Konstantinidis, Andreas Tebbe, Christian Klein, Beatrix Scheffer, Michalis Aivaliotis, Birgit Bisle, Michaela Falb, Friedhelm Pfeiffer, Frank Siedler, and Dieter Oesterhelt
JOURNAL OF PROTEOME RESEARCH (2007) 6(1): 185-193
Proteomic analysis of outer membranes and vesicles from wild-type serogroup B Neisseria meningitidis and a lipopolysaccharide deficient mutant
Williams JN, Skipp PJ, Humphries HE, Christodoulides M, O'connor CD, Heckels JE.
Infect Immun Early Edition: published 11-Dec-2006
Proteomics Exploration Reveals That Actin Is a Signaling Target of the Kinase Akt
Franck Vandermoere, Ikram El Yazidi-Belkoura, Yohann Demont, ChristianSlomianny, Johann Antol, Jerome Lemoine, and Hubert Hondermarck
Mol Cell Proteomics (2007) 6(1): 114-124
Proteomic discovery of 21 proteins expressed in human plasma-derived but not platelet-derived microparticles
Smalley DM, Root KE, Cho H, Ross MM, Ley K.
Thromb Haemost (2007) 97(1): 67-80
Expanding the Subproteome of the Inner Mitochondria Using Protein Separation Technologies: One- and Two-dimensional Liquid Chromatography and Two-dimensional Gel Electrophoresis
Todd McDonald, Simon Sheng, Brian Stanley, Dawn Chen, Young Ko, RobertN. Cole, Peter Pedersen, and Jennifer E. Van Eyk
Mol Cell Proteomics (2006) 5(12): 2392-2411
Differential expression of sarcoplasmic proteins in four heterogeneous ovine skeletal muscles
Muriel Hamelin, Thierry Sayd, Christophe Chambon, Jaques Bouix, Bernard Bibé, Dragan Milenkovic, Hubert Leveziel, Michel Georges, Alex Clop, Penka Marinova, Elisabeth Laville
PROTEOMICS (2007) 7(2): 271-280
Identification of Carbonylated Protein in Frozen Rainbow Trout (Oncorhynchus mykiss) Fillets and Development of Protein Oxidation during Frozen Storage
Kjaersgard IV, Norrelykke MR, Baron CP, Jessen F.
J Agric Food Chem (2006) 54(25): 9437-9446
ROCK1 phosphorylates and activates ZIP kinase
Hagerty L, Weitzel DH, Chambers J, Fortner CN, Brush MH, Loiselle D, Hosoya H, Haystead TA.
J Biol Chem Early Edition: published 8-Dec-2006
A Top-Down/Bottom-Up Study of the Ribosomal Proteins of Caulobacter crescentus
William E. Running, Shobha Ravipaty, Jonathan A. Karty, and James P. Reilly
JOURNAL OF PROTEOME RESEARCH (2007) 6(1): 337-347
Act globally, think locally: systems biology addresses the PDZ domain
Spaller MR.
ACS Chem Biol (2006) 1(4): 207-10
Characterisation of Host Defence Proteins in Milk Using a Proteomic Approach
Grant Smolenski, Stephen Haines, Fiona Y.-S. Kwan, Jude Bond, Vicki Farr, Stephen R. Davis, Kerst Stelwagen, and Thomas T. Wheeler
JOURNAL OF PROTEOME RESEARCH (2007) 6(1): 207-215
Native proteomic analysis of protein complexes in murine intestinal brush border membranes
Marek Babu?iak, Petr Man, Jiri Petrak, Daniel Vyoral
PROTEOMICS (2007) 7(1): 121-129
Lysosomal Membranes from Beige Mice Contain Higher Than Normal Levels of Endoplasmic Reticulum Proteins
Huiwen Zhang, Xiaolian Fan, Richard D. Bagshaw, Li Zhang, Don J. Mahuran, and John W. Callahan
JOURNAL OF PROTEOME RESEARCH (2007) 6(1): 240-249
Proteomic and transcriptomic analyses of differential stress/inflammatory responses in mandibular lymph nodes and oropharyngeal tonsils of European wild boars naturally infected with Mycobacterium bovis
Victoria Naranjo, Margarita Villar, Ma Paz Martín-Hernando, Dolors Vidal, Ursula Höfle, Christian Gortazar, Katherine M. Kocan, Jesús Vázquez, José de la Fuente
PROTEOMICS (2007) 7(2): 220-231
Excess copper induced physiological and proteomic changes in germinating rice seeds
Ahsan N, Lee DG, Lee SH, Kang KY, Lee JJ, Kim PJ, Yoon HS, Kim JS, Lee BH.
Chemosphere Early Edition: published 18-Dec-2006
Proteomic identification of proteins associated with the osmoregulatory transcription factor TonEBP/OREBP; functional effects of Hsp90 and PARP-1
Chen Y, Schnetz MP, Irarrazabal CE, Shen RF, Williams CK, Burg M, Ferraris JD.
Am J Physiol Renal Physiol Early Edition: published 5-Dec-2006
The Oxidation of Yeast Alcohol Dehydrogenase-1 by Hydrogen Peroxide in Vitro
Lijie Men and Yinsheng Wang
JOURNAL OF PROTEOME RESEARCH (2007) 6(1): 216-225
Proteomic discovery of protease substrates
Schilling O, Overall CM.
Curr Opin Chem Biol Early Edition: published 26-Dec-2006
Secretome of Primary Cultures of Human Adipose-derived Stem Cells: Modulation of Serpins by Adipogenesis
Sanjin Zvonic, Michael Lefevre, Gail Kilroy, Z. Elizabeth Floyd, JamesP. DeLany, Indu Kheterpal, Amy Gravois, Ryan Dow, Angie White, Xiying Wu, and Jeffrey M. Gimble
Mol Cell Proteomics (2007) 6(1): 18-28
Mitoproteome Plasticity of Rat Brown Adipocytes in Response to Cold Acclimation
Rachel Navet, Gregory Mathy, Pierre Douette, Rowan Laura Dobson, Pierre Leprince, Edwin De Pauw, Claudine Sluse-Goffart, and Francis E. Sluse
JOURNAL OF PROTEOME RESEARCH (2007) 6(1): 25-33
Insulin protects islets from apoptosis via Pdx1 and specific changes in the human islet proteome
Johnson JD, Bernal-Mizrachi E, Alejandro EU, Han Z, Kalynyak TB, Li H, Beith JL, Gross J, Warnock GL, Townsend RR, Permutt MA, Polonsky KS.
Proc Natl Acad Sci U S A Early Edition: published 8-Dec-2006
A comparative analysis of strategies for isolation of matrix vesicles
Balcerzak M, Radisson J, Azzar G, Farlay D, Boivin G, Pikula S, Buchet R.
Anal Biochem Early Edition: published 25-Oct-2006
Lipid raft proteome of the human neutrophil azurophil granule
Elisabeth Feuk-Lagerstedt, Charlotta Movitz, Sara Pellmé, Claes Dahlgren, Anna Karlsson
PROTEOMICS (2007) 7(2): 194-205
Snake Venomics of Bitis gabonica gabonica. Protein Family Composition, Subunit Organization of Venom Toxins, and Characterization of Dimeric Disintegrins Bitisgabonin-1 and Bitisgabonin-2
Juan J. Calvete, Cezary Marcinkiewicz, and Libia Sanz
JOURNAL OF PROTEOME RESEARCH (2007) 6(1): 326-336
Proteomics to Study Candida albicans Biology and Pathogenicity
Thomas DP, Pitarch A, Monteoliva L, Gil C, Lopez-Ribot JL.
Infect Disord Drug Targets (2006) 6(4): 335-41
Distorted Relation between mRNA Copy Number and Corresponding Major Histocompatibility Complex Ligand Density on the Cell Surface
Andreas O. Weinzierl, Claudia Lemmel, Oliver Schoor, Margret Muller, Tobias Kruger, Dorothee Wernet, Jorg Hennenlotter, Arnulf Stenzl, Karin Klingel, Hans-Georg Rammensee, and Stefan Stevanovic
Mol Cell Proteomics (2007) 6(1): 102-113
Taking care of Dad's DNA
Maruyama R, Singson A.
Genome Biol (2006) 7(12): 244
Proteomic identification and characterization of bacterial factors associated with Burkholderia cenocepacia survival in a murine host
Chung JW, Speert DP.
Microbiology (2007) 153(Pt 1): 206-14
New mortalin and histidyl tRNA synthetase isoforms point out a pitfall in proteomic analysis of Egr1 genetically modified mice
Solenne Chardonnet, Paulette Decottignies, Laurence Amar, Jean-Pierre Le Caer, Sabrina Davis, Serge Laroche, Pierre Le Maréchal
PROTEOMICS (2007) 7(2): 289-298
Effect of glycosylation on the protein pattern in 2-D-gel electrophoresis
Peter Kleinert, Thomas Kuster, Daniel Arnold, Jaak Jaeken, Claus W. Heizmann, Heinz Troxler
PROTEOMICS (2007) 7(1): 15-22
Protein Expression in a Drosophila Model of Parkinson's Disease
Zhiyin Xun, Renã A. Sowell, Thomas C. Kaufman, and David E. Clemmer
JOURNAL OF PROTEOME RESEARCH (2007) 6(1): 348-357
Redox proteomics identification of oxidatively modified brain proteins in inherited Alzheimer's disease: An initial assessment
Butterfield DA, Gnjec A, Poon HF, Castegna A, Pierce WM, Klein JB, Martins RN.
J Alzheimers Dis (2006) 10(4): 391-7
Bone Marrow Stromal Cells Act as Feeder Cells for Tendon Fibroblasts through Soluble Factors
Shimode K, Iwasaki N, Majima T, Funakoshi T, Sawaguchi N, Onodera T, Minami A.
Tissue Eng Early Edition: published 1-Dec-2006
Differential radioactive quantification of protein abundance ratios between benign and malignant prostate tissues: Cancer association of annexin A3
Wojciech Wozny, Klaus Schroer, Gerhard P. Schwall, Slobodan Poznanovi?, Werner Stegmann, Klaus Dietz, Hermann Rogatsch, Georg Schaefer, Heidi Huebl, Helmut Klocker, André Schrattenholz, Michael A. Cahill
PROTEOMICS (2007) 7(2): 313-322
Mapping the Antigenicity of the Parasites in Leishmania donovani Infection by Proteome Serology
Forgber M, Basu R, Roychoudhury K, Theinert S, Roy S, Sundar S, Walden P.
PLoS ONE (2006) 1: e40.
A serum proteomic pattern for the detection of colorectal adenocarcinoma using surface enhanced laser desorption and ionization mass spectrometry
Liu XP, Shen J, Li ZF, Yan L, Gu J.
Cancer Invest (2006) 24(8): 747-53
Proteome analysis of leaves from the resurrection plant Boea hygrometrica in response to dehydration and rehydration
Jiang G, Wang Z, Shang H, Yang W, Hu Z, Phillips J, Deng X.
Planta Early Edition: published 8-Dec-2006
Validation of pharmacogenomic biomarker classifiers for treatment selection
Simon R.
Cancer Biomark (2006) 2(3-4): 89-96
Proteomic analysis of human very low-density lipoprotein by two-dimensional gel electrophoresis and MALDI-TOF/TOF
Carmine Mancone, Laura Amicone, Gian Maria Fimia, Elena Bravo, Mauro Piacentini, Marco Tripodi, Tonino Alonzi
PROTEOMICS (2007) 7(1): 143-154
Different Isoforms of Apolipoprotein AI Present Heterologous Post-Translational Expression in HIV Infected Patients
Sung-Soon Kim, Mi-Hye Kim, Bo-Kyung Shin, Han-Ju Na, Jin-Young Choi, Mee-Kyung Kee, Seon-Ah Chong, and Myeong-Jin Nam
JOURNAL OF PROTEOME RESEARCH (2007) 6(1): 180-184
Ubiquitin COOH-Terminal Hydrolase 1: A Biomarker of Renal Cell Carcinoma Associated with Enhanced Tumor Cell Proliferation and Migration[?Q1: Running head: UCHL1, a Biomarker of RCC. Short title OK?Q1]
Seliger B, Fedorushchenko A, Brenner W, Ackermann A, Atkins D, Hanash S, Lichtenfels R.
Clin Cancer Res (2007) 13(1): 27-37
Proteomic analysis of the airway surface liquid: modulation by proinflammatory cytokines
Candiano G, Bruschi M, Pedemonte N, Musante L, Ravazzolo R, Liberatori S, Bini L, Galietta LJ, Zegarra-Moran O.
Am J Physiol Lung Cell Mol Physiol (2007) 292(1): L185-98
High-throughput genomic technology in research and clinical management of breast cancer. Plasma-based proteomics in early detection and therapy
Davis MA, Hanash S.
Breast Cancer Res (2006) 8(6): 217
Biomarkers for the Development of Cancer Vaccines : Current Status
Copier J, Whelan M, Dalgleish A.
Mol Diagn Ther (2006) 10(6): 337-343
Cardiovascular Biomarker Discovery by SELDI-TOF Mass Spectrometry
Meilhac O, Delbosc S, Michel JB.
Methods Mol Biol (2006) 357: 331-42
Proteomics analysis of stage-specific proteins expressed in human squamous cell lung carcinoma tissues
Deng B, Ye N, Luo G, Chen X, Wang Y.
Cancer Biomark (2005) 1(6): 279-86
A Serum Glycomics Approach to Breast Cancer Biomarkers
Crystal Kirmiz, Bensheng Li, Hyun Joo An, Brian H. Clowers, Helen K. Chew, Kit S. Lam, Anthony Ferrige, Robert Alecio, Alexander D. Borowsky, Shola Sulaimon, Carlito B. Lebrilla, and Suzanne Miyamoto
Mol Cell Proteomics (2007) 6(1): 43-55
Proteomic Profiling of the Amniotic Fluid to Detect Inflammation, Infection, and Neonatal Sepsis
Buhimschi CS, Bhandari V, Hamar BD, Bahtiyar MO, Zhao G, Sfakianaki AK, Pettker CM, Magloire L, Funai E, Norwitz ER, Paidas M, Copel JA, Weiner CP, Lockwood CJ, Buhimschi IA.
PLoS Med (2007) 4(1): e18
Main approaches to target discovery and validation
Sioud M.
Methods Mol Biol (2006) 360: 1-12
Overexpression of CLIC1 in human gastric carcinoma and its clinicopathological significance
Chi-De Chen, Chia-Siu Wang, Ya-Hui Huang, Kun-Yi Chien, Ying Liang, Wei-Jan Chen, Kwang-Huei Lin
PROTEOMICS (2007) 7(1): 155-167
Decreased levels of apolipoprotein A-I in plasma of schizophrenic patients
La YJ, Wan CL, Zhu H, Yang YF, Chen YS, Pan YX, Feng GY, He L.
J Neural Transm Early Edition: published 14-Dec-2006
2-D DIGE Analysis of Liver and Red Blood Cells Provides Further Evidence for Oxidative Stress in Schizophrenia
Sudhakaran Prabakaran, Martina Wengenroth, Helen E. Lockstone, Kathryn Lilley, F. Markus Leweke, and Sabine Bahn
JOURNAL OF PROTEOME RESEARCH (2007) 6(1): 141-149
Cardiovascular Proteomics
Vivanco, Fernando; Darde, Veronica M.; De la Cuesta, Fernando; Barderas, Maria G.
Current Proteomics (2006) 3(3): 147-170
Prion infection-impaired functional blocks identified by proteomics enlighten the targets and the curing pathways of an anti-prion drug
Chich JF, Schaeffer B, Bouin AP, Mouthon F, Labas V, Larramendy C, Deslys JP, Grosclaude J.
Biochim Biophys Acta Early Edition: published 7-Nov-2006
Mapping of Malus domestica allergens by 2-D electrophoresis and IgE-reactivity
Anita Herndl, Gorji Marzban, Daniel Kolarich, Rainer Hahn, Donato Boscia, Wolfgang Hemmer, Fatemeh Maghuly, Elitza Stoyanova, Hermann Katinger, Margit Laimer
ELECTROPHORESIS (2007) 28(3): 437-448
Cerebrospinal fluid proteomic biomarkers for Alzheimer's disease
Finehout EJ, Franck Z, Choe LH, Relkin N, Lee KH.
Ann Neurol Early Edition: published 13-Dec-2006
Proteomic profiling identifies breast tumor metastasis-associated factors in an isogenic model
Paweena Kreunin, Chul Yoo, Virginia Urquidi, David M. Lubman, Steve Goodison
PROTEOMICS (2007) 7(2): 299-312
The M. tuberculosis cell surface glycoprotein Apa as a potential adhesin to colonize the target cells via the innate immune system pulmonary C-type lectin SP-A
Ragas A, Roussel L, Puzo G, Riviere M.
J Biol Chem Early Edition: published 8-Dec-2006
Proteomic inventory of myocardial proteins from patients with chronic Chagas' cardiomyopathy
Teixeira PC, Iwai LK, Kuramoto AC, Honorato R, Fiorelli A, Stolf N, Kalil J, Cunha-Neto E.
Braz J Med Biol Res (2006) 39(12): 1549-62
Evaluation of an in vitro model of androgen ablation and identification of the androgen responsive proteome in LNCaP cells
John G. Rowland, Joanne L. Robson, William J. Simon, Hing Y. Leung, Antoni R. Slabas
PROTEOMICS (2007) 7(1): 47-63
Biomarker assay translation from discovery to clinical studies in cancer drug development: quantification of emerging protein biomarkers
Lee JW, Figeys D, Vasilescu J.
Adv Cancer Res (2006) 96: 269-98
Proteomic analysis of foam cells
Yang PY, Rui YC, Yang PY, Yu YL.
Methods Mol Biol (2006) 357: 297-306
Identification of Clinically Significant Tumor Antigens by Selecting Phage Antibody Library on Tumor Cells in Situ Using Laser Capture Microdissection
Weiming Ruan, Adam Sassoon, Feng An, Jeff P. Simko, and Bin Liu
Mol Cell Proteomics (2006) 5(12): 2364-2373
Proteomic alteration in gastic adenocarcinomas from Japanese patients
Yoshihara T, Kadota Y, Yoshimura Y, Tatano Y, Takeuchi N, Okitsu H, Umemoto A, Yamauchi T, Itoh K.
Mol Cancer (2006) 5(1): 75
Identification of tumor antigens by using proteomics
Le Naour F.
Methods Mol Biol (2006) 360: 327-34
Proteomic identification of secreted proteins as surrogate markers for signal transduction inhibitor activity
McClelland CM, Gullick WJ.
Br J Cancer Early Edition: published 9-Jan-2007
Proteomic Analysis of Cervical-Vaginal Fluid: Identification of Novel Biomarkers for Detection of Intra-amniotic Infection
Michael G. Gravett, Archana Thomas, Kimberly A. Schneider, Ashok P. Reddy, Surendra Dasari, Thomas Jacob, Xinfang Lu, Matthew Rodland, Leonardo Pereira, Drew W. Sadowsky, Charles T. Roberts, Jr., Miles J. Novy, and Srinivasa R. Nagalla
JOURNAL OF PROTEOME RESEARCH (2007) 6(1): 89-96
Proteomic analysis of tyrosine phosphorylation during human liver transplantation
Emadali A, Metrakos PP, Kalantari F, Boutros T, Boismenu D, Chevet E.
Proteome Science (2007) 5(1): 1
Comparison of pancreas juice proteins from cancer versus pancreatitis using quantitative proteomic analysis
Chen R, Pan S, Cooke K, Moyes KW, Bronner MP, Goodlett DR, Aebersold R, Brentnall TA.
Pancreas (2007) 34(1): 70-9
Biomarker discovery: A proteomic approach for brain cancer profiling
Khalil AA, James P.
Cancer Sci (2007) 98(2): 201-13
Proteomics profiling of urine with surface enhanced laser desorption/ionization time of flight mass spectrometry
Roelofsen H, Alvarez-Llamas G, Schepers M, Landman K, Vonk RJ.
Proteome Science (2007) 5(1): 2
Analysis of parotid glands of primary Sjogren's syndrome patients using proteomic technology reveals altered autoantigen composition and novel antigenic targets
Stea EA, Routsias JG, Samiotaki M, Panayotou G, Papalambros E, Moutsopoulos HM, Tzioufas AG.
Clin Exp Immunol (2007) 147(1): 81-9
Mass Spectrometric Detection of Tissue Proteins in Plasma
Hui Zhang, Alvin Y. Liu, Paul Loriaux, Bernd Wollscheid, Yong Zhou, Julian D. Watts, and Ruedi Aebersold
Mol Cell Proteomics (2007) 6(1): 64-71
Two-dimensional polyacrylamide gel electrophoresis for cardiovascular proteomics
Dunn MJ.
Methods Mol Biol (2006) 357: 3-14
Oxidized Transthyretin in Amniotic Fluid as an Early Marker of Preeclampsia
Carlo Vascotto, Anna Maria Salzano, Chiara D'Ambrosio, Arrigo Fruscalzo, Diego Marchesoni, Carla di Loreto,O Andrea Scaloni, Gianluca Tell, and Franco Quadrifoglio
JOURNAL OF PROTEOME RESEARCH (2007) 6(1): 160-170
Multivariate analysis approach to the plasma protein profile of patients with advanced colorectal cancer
Eugenio Ragazzi, Salvatore Pucciarelli, Roberta Seraglia, Laura Molin, Marco Agostini, Mario Lise, Pietro Traldi, Donato Nitti
Journal of Mass Spectrometry (2006) 41(12): 1546-1553
Conventional and proteomic technologies for the detection of early stage malignancies: markers for ovarian cancer
Lee CJ, Ariztia EV, Fishman DA.
Crit Rev Clin Lab Sci (2007) 44(1): 87-114
Mixing proteomics and alcohol
Lovinger DM.
Alcohol (2006) 40(1): 1-2
Identification of Specific Protein Markers in Microdissected Hepatocellular Carcinoma
Christian Melle, Günther Ernst, Olaf Scheibner, Roland Kaufmann, Bettina Schimmel, Annett Bleul, Utz Settmacher, Merten Hommann, Uwe Claussen, and Ferdinand von Eggeling
JOURNAL OF PROTEOME RESEARCH (2007) 6(1): 306-315
Investigation on glycosylation patterns of proteins from human liver cancer cell lines based on the multiplexed proteomics technology
Zhou H, Liu Y, Chui J, Guo K, Shun Q, Lu W, Jin H, Wei L, Yang P.
Arch Biochem Biophys Early Edition: published 2-Nov-2006
Detection of pre-neoplastic and neoplastic prostate disease by MADI profiling of urine
M'koma AE, Blum DL, Norris JL, Koyama T, Billheimer D, Motley S, Ghiassi M, Ferdowsi N, Bhowmick I, Chang SS, Fowke JH, Caprioli RM, Bhowmick NA.
Biochem Biophys Res Commun Early Edition: published 22-Dec-2006
Proteomics study of neuropathic and non-neuropathic dorsal root ganglia: Altered protein regulation following segmental spinal nerve ligation injury
Komori N, Takemori N, Kim HK, Singh A, Hwang SH, Foreman R, Chung K, Chung JM, Matsumoto H.
Physiol Genomics Early Edition: published 9-Jan-2007
Oligosaccharides, neoglycoproteins and humanized plastics: their biocatalytic synthesis and possible medical applications
Nahalka J, Shao J, Gemeiner P.
Biotechnol Appl Biochem (2007) 46(Pt 1): 1-12
Proteomic profiling of primary breast cancer predicts axillary lymph node metastasis
Nakagawa T, Huang SK, Martinez SR, Tran AN, Elashoff D, Ye X, Turner RR, Giuliano AE, Hoon DS.
Cancer Res (2006) 66(24): 11825-30
Mass spectrometry: uncovering the cancer proteome for diagnostics
van der Merwe DE, Oikonomopoulou K, Marshall J, Diamandis EP.
Adv Cancer Res (2006) 96: 23-50
Identification of bactenecin-1 in cervicovaginal fluid by two-dimensional electrophoresis in an ovine model of preterm labour
I. Ross Young, Gregory E. Rice, Hannah K. Palliser, Mustafa Ayhan, Nicole L. Dellios, Jonathan J. Hirst
PROTEOMICS (2007) 7(2): 281-288
Proteomic and bioinformatic analysis of epithelial tight junction reveals an unexpected cluster of synaptic molecules
Tang VW.
Biol Direct (2006) 1(1): 37
Proteomic analysis of spinal cord of presymptomatic amyotrophic lateral sclerosis G93A SOD1 mouse
Massignan T, Casoni F, Basso M, Stefanazzi P, Biasini E, Tortarolo M, Salmona M, Gianazza E, Bendotti C, Bonetto V.
Biochem Biophys Res Commun Early Edition: published 20-Dec-2006
Modification of Host Lipid Raft Proteome upon Hepatitis C Virus Replication
Petra Mannova, Ruihua Fang, Hong Wang, Bin Deng, Martin W. McIntosh, Samir M. Hanash, and Laura Beretta
Mol Cell Proteomics (2006) 5(12): 2319-2325
Identification of 4-hydroxynonenal-modified retinal proteins induced by photooxidative stress prior to retinal degeneration
Tanito M, Haniu H, Elliott MH, Singh AK, Matsumoto H, Anderson RE.
Free Radic Biol Med (2006) 41(12): 1847-59
Proteomic Analysis of Proteins Differentially Expressed in Preeclamptic Trophoblasts
Sun LZ, Yang NN, De W, Xiao YS.
Gynecol Obstet Invest (2007) 64(1): 17-23
Analysis of antihypertensive drugs in the heart of animal models: a proteomic approach
Lazaro A, Gallego-Delgado J, Osende JI, Egido J, Vivanco F.
Methods Mol Biol (2006) 357: 45-58
From genome to proteome in tumor profiling: molecular events in colorectal cancer genesis
Habermann JK, Roblick UJ, Upender M, Ried T, Auer G.
Adv Exp Med Biol (2006) 587: 161-77
Heroin-Induces Differential Protein Expression by Normal Human Astrocytes (NHA)
Reynolds JL, Mahajan SD, Sykes D, Nair MP.
Am J Infect Dis (2006) 2(2): 49-57
Identification and Dynamics of Proteins Adhering To the Surface of Medical Silicones in Vivo and in Vitro
Aleksandar Backovic, Hong-Lei Huang, Barbara Del Frari, Hildegunde Piza, Lukas A. Huber, and Georg Wick
JOURNAL OF PROTEOME RESEARCH (2007) 6(1): 376-381
A proteomic study of serum from children with autism showing differential expression of apolipoproteins and complement proteins
Corbett BA, Kantor AB, Schulman H, Walker WL, Lit L, Ashwood P, Rocke DM, Sharp FR.
Mol Psychiatry Early Edition: published 26-Dec-2006
Innate immune response by ficolin binding in apoptotic placenta is associated with the clinical syndrome of preeclampsia
Wang CC, Yim KW, Poon TC, Choy KW, Chu CY, Lui WT, Lau TK, Rogers MS, Leung TN.
Clin Chem (2007) 53(1): 42-52
Proteomic profiling of cellular stresses in Bacillus subtilis reveals cellular networks and assists in elucidating antibiotic mechanisms of action
Bandow JE, Hecker M.
Prog Drug Res (2007) 64: 79: 81-101
Elevated Serum Levels of Interferon-Regulated Chemokines Are Biomarkers for Active Human Systemic Lupus Erythematosus
Bauer JW, Baechler EC, Petri M, Batliwalla FM, Crawford D, Ortmann WA, Espe KJ, Li W, Patel DD, Gregersen PK, Behrens TW.
PLoS Med (2006) 3(12): e491
Protein Markers of Ischemic Insult in Brain Endothelial Cells Identified Using 2D Gel Electrophoresis and ICAT-Based Quantitative Proteomics
Arsalan S. Haqqani, John Kelly, Ewa Baumann, Reiner F. Haseloff, Ingolf E. Blasig, and Danica B. Stanimirovic
JOURNAL OF PROTEOME RESEARCH (2007) 6(1): 226-239
Proteomic analyses to identify novel therapeutic targets for the treatment of advanced prostate cancer
Comuzzi B, Sadar MD.
Cellscience (2006) 3(1): 61-81
Protein biomarkers of nephrotoxicity; a review and findings with cyclosporin A, a signal transduction kinase inhibitor and N-phenylanthranilic acid
Betton GR, Kenne K, Somers R, Marr A.
Cancer Biomark (2005) 1(1): 59-67
An investigation of the effects of endometriosis on the proteome of human eutopic endometrium: A heterogeneous tissue with a complex disease
Paul A. Fowler, Jenny Tattum, Siladitya Bhattacharya, Thomas Klonisch, Sabine Hombach-Klonisch, Rafet Gazvani, Richard G. Lea, Iain Miller, William G. Simpson, Phillip Cash
PROTEOMICS (2007) 7(1): 130-142
Potential applications and limitations of proteomics in the study of neurological disease
Kinoshita Y, Uo T, Jayadev S, Garden GA, Conrads TP, Veenstra TD, Morrison RS.
Arch Neurol (2006) 63(12): 1692-6
Comparative Proteome Analysis of Serum from Acute Pulmonary Embolism Rat Model for Biomarker Discovery
Sheng-qing Li, Jun Yun, Fu-bo Xue, Chang-qing Bai, Shu-guang Yang, Hai-ping Que, Xin Zhao, Zhe Wu, Yu Wang, and Shao-jun Liu
JOURNAL OF PROTEOME RESEARCH (2007) 6(1): 150-159
Identification of differential proteins in nasopharyngeal carcinoma cells with p53 silence by proteome analysis
Sun Y, Yi H, Zhang PF, Li MY, Li C, Li F, Peng F, Feng XP, Yang YX, Yang F, Xiao ZQ, Chen ZC.
FEBS Lett Early Edition: published 13-Dec-2006
Identification of proteins whose expression is up- or down-regulated in the mushroom bodies in the honeybee brain using proteomics
Uno Y, Fujiyuki T, Morioka M, Takeuchi H, Kubo T.
FEBS Lett Early Edition: published 12-Dec-2006
A proteomic approach to the investigation of early events involved in vascular smooth muscle cell activation
Boccardi C, Cecchettini A, Caselli A, Camici G, Evangelista M, Mercatanti A, Rainaldi G, Citti L.
Cell Tissue Res Early Edition: published 10-Jan-2007
Proteomic Profiling of a Snake Venom Using High Mass Detection MALDI-TOF Mass Spectrometry
Yanes O, Aviles FX, Wenzel R, Nazabal A, Zenobi R, Calvete JJ.
J Am Soc Mass Spectrom Early Edition: published 2-Jan-2007
Proteome Analysis of Human Placentae: Pre-eclampsia Versus Normal Pregnancy
Mine K, Katayama A, Matsumura T, Nishino T, Kuwabara Y, Ishikawa G, Murata T, Sawa R, Otsubo Y, Shin S, Takeshita T.
Placenta Early Edition: published 18-Dec-2006
Characterization of circulating human monocytes by proteomic analysis
Barderas MG, Darde VM, Duran MC, Egido J, Vivanco F.
Methods Mol Biol (2006) 357: 319-28
Proteome response of Elymus elongatum to severe water stress and recovery
Gazanchian A, Hajheidari M, Sima NK, Salekdeh GH.
J Exp Bot Early Edition: published 8-Jan-2007
Environmentally modulated phosphorylation and dynamics of proteins in photosynthetic membranes
Vener AV.
Biochim Biophys Acta Early Edition: published 15-Nov-2006
Quantitative proteomic profiling of membrane proteins from the mouse brain cortex, hippocampus, and cerebellum using the HysTag reagent: Mapping of neurotransmitter receptors and ion channels
Olsen JV, Nielsen PA, Andersen JR, Mann M, Wisniewski JR.
Brain Res Early Edition: published 4-Jan-2007
Complexity analysis of yeast proteome network
Bonchev D.
Chem Biodivers (2004) 1(2): 312-26
Proteomic Identification of 14-3-3zeta as an Adapter for IGF-1 and Akt/GSK-3beta Signaling and Survival of Renal Mesangial Cells
Singh LP, Jiang Y, Cheng DW.
Int J Biol Sci (2006) 3(1): 27-39
Upregulation of dihydropyrimidinase-related protein 2, spectrin alpha II chain, heat shock cognate protein 70 pseudogene 1 and tropomodulin 2 after focal cerebral ischemia in rats-A proteomics approach
Chen A, Liao WP, Lu Q, Wong WS, Wong PT.
Neurochem Int Early Edition: published 28-Dec-2006
Real-time in vivo proteomic identification of novel kinase substrates in smooth muscle
Wooldridge AA, Haystead TA.
Methods Mol Biol (2006) 357: 235-52
Proteomic analysis of rat cortical neurons after fluoxetine treatment
Cecconi D, Mion S, Astner H, Domenici E, Righetti PG, Carboni L.
Brain Res Early Edition: published 28-Dec-2006
A proteomic analysis of adult rat bone reveals the presence of cartilage/chondrocyte markers
Schreiweis MA, Butler JP, Kulkarni NH, Knierman MD, Higgs RE, Halladay DL, Onyia JE, Hale JE.
J Cell Biochem Early Edition: published 4-Jan-2007
Proteomic study of caveolae and rafts isolated from human endothelial cells
Sprenger RR, Horrevoets AJ.
Methods Mol Biol (2006) 357: 199-214
Characterization of the human atheroma plaque secretome by proteomic analysis
Duran MC, Martin-Ventura JL, Mas S, Barderas MG, Darde VM, Jensen ON, Egido J, Vivanco F.
Methods Mol Biol (2006) 357: 141-50
Proteomics profiling of urine with surface enhanced laser desorption/ionization time of flight mass spectrometry
Roelofsen H, Alvarez-Llamas G, Schepers M, Landman K, Vonk R
Proteome Science (2007) 5: 2
Proteomic profiling of cold thyroid nodules
Krause K, Karger S, Schierhorn A, Poncin S, Many MC, Fuhrer D.
Endocrinology Early Edition: published 28-Dec-2006
'Suicide' of crickets harbouring hairworms: a proteomics investigation
Biron DG, Ponton F, Marche L, Galeotti N, Renault L, Demey-Thomas E, Poncet J, Brown SP, Jouin P, Thomas F.
Insect Mol Biol (2006) 15(6): 731-42
Analyzing the cardiac muscle proteome by liquid chromatography-mass spectrometry-based expression proteomics
Gramolini AO, Kislinger T, Liu P, Maclennan DH, Emili A.
Methods Mol Biol (2006) 357: 15-32
Proteomic analysis of vascular smooth muscle cells treated with ouabain
Pshezhetsky AV.
Methods Mol Biol (2006) 357: 253-70
Rat plasma proteomics: Effects of abundant protein depletion on proteomic analysis
Linke T, Doraiswamy S, Harrison EH.
J Chromatogr B Analyt Technol Biomed Life Sci Early Edition: published 21-Dec-2006
High-accuracy proteome maps of human body fluids
Schmidt A, Aebersold R
Genome Biology (2006) 7: 242
Identification of yeast oxidized proteins Chromatographic top-down approach for identification of carbonylated, fragmented and cross-linked proteins in yeast
Mirzaei H, Regnier F.
J Chromatogr A Early Edition: published 21-Dec-2006
Differential effects of two period genes on the physiology and proteomic profiles of mouse anterior tibialis muscles
Bae K, Lee K, Seo Y, Lee H, Kim D, Choi I.
Mol Cells (2006) 22(3): 275-84
Major Proteome Variations Associated with Cherry Tomato Pericarp Development and Ripening
Faurobert M, Mihr C, Bertin N, Pawlowski T, Negroni L, Sommerer N, Causse M.
Plant Physiol Early Edition: published 5-Jan-2007
Proteomic expression analysis of cardiomyocytes subjected to proteasome inhibition
Doll D, Sarikas A, Krajcik R, Zolk O.
Biochem Biophys Res Commun Early Edition: published 12-Dec-2006
Proteomic Analysis of Proteins Differentially Expressed in Preeclamptic Trophoblasts
Sun LZ, Yang NN, De W, Xiao YS.
Gynecol Obstet Invest (2007) 64(1): 17-23
Molecular Analysis of Maturation Processes by Protein and Phosphoprotein Profiling during In Vitro Maturation of Bovine Oocytes: A Proteomic Approach
Bhojwani M, Rudolph E, Kanitz W, Zuehlke H, Schneider F, Tomek W.
Cloning Stem Cells (2006) 8(4): 259-74
Proteomics study of neuropathic and non-neuropathic dorsal root ganglia: Altered protein regulation following segmental spinal nerve ligation injury
Komori N, Takemori N, Kim HK, Singh A, Hwang SH, Foreman R, Chung K, Chung JM, Matsumoto H.
Physiol Genomics Early Edition: published 9-Jan-2007
A comparison study in the proteomic signatures of multipotent germline stem cells, embryonic stem cells, and germline stem cells
Kurosaki H, Kazuki Y, Hiratsuka M, Inoue T, Matsui Y, Wang CC, Kanatsu-Shinohara M, Shinohara T, Toda T, Oshimura M.
Biochem Biophys Res Commun Early Edition: published 13-Dec-2006
Redox regulation and antioxidative defence in Arabidopsis leaves viewed from a systems biology perspective
Wormuth D, Heiber I, Shaikali J, Kandlbinder A, Baier M, Dietz KJ.
J Biotechnol Early Edition: published 12-Dec-2006
Proteomic analyses of amniotic fluid: Potential applications in health and diseases
Queloz PA, Crettaz D, Thadikkaran L, Sapin V, Gallot D, Jani J, Deprest J, Lemery D, Barelli S, Tissot JD.
J Chromatogr B Analyt Technol Biomed Life Sci Early Edition: published 18-Dec-2006
The proteome of endothelial cells
Gonzalez-Cabrero J, Pozo M, Duran MC, de Nicolas R, Egido J, Vivanco F.
Methods Mol Biol (2006) 357: 181-98
Proteome Dynamics during Plastid Differentiation in Rice (Oryza sativa L.)
Kleffmann T, von Zychlinski A, Russenberger D, Hirsch-Hoffmann M, Gehrig P, Gruissem W, Baginsky S.
Plant Physiol Early Edition: published 22-Dec-2006
The proteome and secretome of human arterial smooth muscle cell
Dupont A, Pinet F.
Methods Mol Biol (2006) 357: 225-34
Mitoproteome: human heart mitochondrial protein sequence database
Guda P, Subramaniam S, Guda C.
Methods Mol Biol (2006) 357: 375-84
Detection and identification of bacterial cell surface proteins by fluorescent labeling
Cecilia Anaya, Nadia Church, Janina P. Lewis
PROTEOMICS (2007) 7(2): 215-219
Structural protein analysis of the polyvalent staphylococcal bacteriophage 812
Lud?k Eyer, Roman Pant??ek, Zbyn?k Zdráhal, Hana Kone?ná, Petr Ka?párek, Vladislava R??i?ková, Lenka Hernychová, Jan Preisler, Ji?í Do?ka?
PROTEOMICS (2007) 7(1): 64-72
Characterization of the proteins of bacterial strain isolated from contaminated site involved in heavy metal resistance-A proteomic approach
Bar C, Patil R, Doshi J, Kulkarni MJ, Gade WN.
J Biotechnol Early Edition: published 24-Nov-2006
Proteome analysis of Halobacterium salinarum and characterization of proteins related to the degradation of isopropyl alcohol
Ha DJ, Joo WA, Han GY, Kim CW.
Biochim Biophys Acta Early Edition: published 6-Nov-2006
Absence of Classical Heat Shock Response in the Citrus Pathogen Xylella fastidiosa
Martins D, Astua-Monge G, Coletta-Filho HD, Winck FV, Baldasso PA, de Oliveira BM, Marangoni S, Machado MA, Novello JC, Smolka MB.
Curr Microbiol Early Edition: published 5-Jan-2007
Multidimensional analysis of the insoluble sub-proteome of Oceanobacillus iheyensis HTE831, an alkaliphilic and halotolerant deep-sea bacterium isolated from the Iheya ridge
Robert L. J. Graham, Catherine E. Pollock, S. Naomi O'Loughlin, Nigel G. Ternan, D. Brent Weatherly, Rick L. Tarleton, Geoff McMullan
PROTEOMICS (2007) 7(1): 82-91
Proteomic Analysis of the Carbonate Insoluble Outer Membrane Fraction of the Soft-Rot Pathogen Dickeya dadantii (syn. Erwinia chrysanthemi) Strain 3937
Lavanya Babujee, Balakrishnan Venkatesh, Akihiro Yamazaki, and Shinji Tsuyumu
JOURNAL OF PROTEOME RESEARCH (2007) 6(1): 62-69
Feature-based reappraisal of the Bacillus subtilis exoproteome
Harold Tjalsma
PROTEOMICS (2007) 7(1): 73-81
CadC has a global translational effect during acid adaptation in Salmonella enterica serovar Typhimurium
Lee YH, Kim BH, Kim JH, Yoon WS, Ho Bang S, Park YK.
J Bacteriol Early Edition: published 5-Jan-2007
Identification of Chlamydia pneumoniae Proteins in the Transition from Reticulate to Elementary Body Formation
Sanghamitra Mukhopadhyay, David Good, Richard D. Miller, James E. Graham, Sarah A. Mathews, Peter Timms, and James T. Summersgill
Mol Cell Proteomics (2006) 5(12): 2311-2318
Global Gene Expression Profiling of Bacillus subtilis in Response to Ammonium and Tryptophan Starvation as Revealed by Transcriptome and Proteome Analysis
Tam le T, Eymann C, Antelmann H, Albrecht D, Hecker M.
J Mol Microbiol Biotechnol (2007) 12(1-2): 121-30
A critical role for peptidoglycan N-deacetylation in Listeria evasion from the host innate immune system
Boneca IG, Dussurget O, Cabanes D, Nahori MA, Sousa S, Lecuit M, Psylinakis E, Bouriotis V, Hugot JP, Giovannini M, Coyle A, Bertin J, Namane A, Rousselle JC, Cayet N, Prevost MC, Balloy V, Chignard M, Philpott DJ, Cossart P, Girardin SE.
Proc Natl Acad Sci U S A Early Edition: published 10-Jan-2007
Characterization of beta-Ketoadipate Pathway from Multi-Drug Resistance Bacterium, Acinetobacter baumannii DU202 by Proteomic Approach
Park SH, Kim JW, Yun SH, Leem SH, Kahng HY, Kim SI.
J Microbiol (2006) 44(6): 632-40
Proteomic comparison of Mycobacterium avium subspecies paratuberculosis grown in vitro and isolated from clinical cases of ovine paratuberculosis
Hughes V, Smith S, Garcia-Sanchez A, Sales J, Stevenson K.
Microbiology (2007) 153(Pt 1): 196-206
Proteomic survey of the pathogenic Mycoplasma hyopneumoniae strain 7448 and identification of novel post-translationally modified and antigenic proteins
Pinto PM, Chemale G, de Castro LA, Costa AP, Kich JD, Vainstein MH, Zaha A, Ferreira HB.
Vet Microbiol Early Edition: published 26-Nov-2006
Engineering primary metabolic pathways of industrial micro-organisms
Kern A, Tilley E, Hunter IS, Legisa M, Glieder A.
J Biotechnol Early Edition: published 2-Dec-2006
The proteomic profile of Fusobacterium nucleatum is regulated by growth pH
Zilm PS, Bagley CJ, Rogers AH, Milne IR, Gully NJ.
Microbiology (2007) 153(Pt 1): 148-59
A proteomic analysis of Psychrobacter articus 273-4 adaptation to low temperature and salinity using a 2-D liquid mapping approach
Zheng S, Ponder MA, Shih JY, Tiedje JM, Thomashow MF, Lubman DM.
Electrophoresis Early Edition: published 19-Dec-2006
Protein variability among Mycoplasma hyopneumoniae isolates
Calus D, Baele M, Meyns T, de Kruif A, Butaye P, Decostere A, Haesebrouck F, Maes D.
Vet Microbiol Early Edition: published 10-Nov-2006
Transcriptional and Proteomic Profiles of Group B Streptococcus Type V Reveal Potential Adherence Proteins Associated with High-Level Invasion
Johri AK, Margarit I, Broenstrup M, Brettoni C, Hua L, Gygi SP, Telford J, Grandi G, Paoletti LC.
Infect Immun Early Edition: published 8-Jan-2007
Proteomic Identification of Macrophage Migration-inhibitory Factor upon Exposure to TiO2 Particles
Myung-Hwa Cha, TaiYoun Rhim, Kyung Hun Kim, An-Soo Jang, Young-Ki Paik, and Choon-Sik Park
Mol Cell Proteomics (2007) 6(1): 56-63
Characterization of beta-Ketoadipate Pathway from Multi-Drug Resistance Bacterium, Acinetobacter baumannii DU202 by Proteomic Approach
Park SH, Kim JW, Yun SH, Leem SH, Kahng HY, Kim SI.
J Microbiol (2006) 44(6): 632-40
A Proteomics Screen Implicates HSP83 and a Small Kinetoplastid Calpain-related Protein in Drug Resistance in Leishmania donovani Clinical Field Isolates by Modulating Drug-induced Programmed Cell Death
Baptiste Vergnes, Benjamin Gourbal, Isabelle Girard, Shyam Sundar, Jolyne Drummelsmith, and Marc Ouellette
Mol Cell Proteomics (2007) 6(1): 88-101
Effect of long-term exposure of SH-SY5Y cells to morphine: a whole cell proteomic analysis
Neasta J, Uttenweiler-Joseph S, Chaoui K, Monsarrat B, Meunier JC, Mouledous L.
Proteome Science (2006) 4(1): 23
The Influence of Pharmacogenetics on Fatty Liver Disease in the Wistar and Kyoto Rats: A Combined Transcriptomic and Metabonomic Study
Julian L. Griffin, James Scott, and Jeremy K. Nicholson
JOURNAL OF PROTEOME RESEARCH (2007) 6(1): 54-61
Comparative Proteomic Analysis of Chronic Myelogenous Leukemia Cells: Inside the Mechanism of Imatinib Resistance
Germano Ferrari, Roberta Pastorelli, Francesca Buchi, Elena Spinelli, Antonella Gozzini, Alberto Bosi, and Valeria Santini
JOURNAL OF PROTEOME RESEARCH (2007) 6(1): 367-375
Discovering Antibiotic Efficacy Biomarkers: TOWARD MECHANISM-SPECIFIC HIGH CONTENT COMPOUND SCREENING
Christoph Freiberg, Nina Brunner, Ludwig Macko, and Hans Peter Fischer
Mol Cell Proteomics (2006) 5(12): 2326-2335
Proteomic analysis of glutamate-induced toxicity in HT22 cells
Youra Lee, Hye-won Park, Sung Goo Park, Sayeon Cho, Pyung Keun Myung, Byoung Chul Park, Do Hee Lee
PROTEOMICS (2007) 7(2): 185-193
A proteomics study of the response of North Ronaldsay sheep to copper challenge
Simpson DM, Mobasheri A, Haywood S, Beynon RJ.
BMC Vet Res (2006) 2(1): 36
Protein array autoantibody profiles for insights into systemic lupus erythematosus and incomplete lupus syndromes
Li QZ, Zhou J, Wandstrat AE, Carr-Johnson F, Branch V, Karp DR, Mohan C, Wakeland EK, Olsen NJ.
Clin Exp Immunol (2007) 147(1): 60-70
A serum proteomic pattern for the detection of colorectal adenocarcinoma using surface enhanced laser desorption and ionization mass spectrometry
Liu XP, Shen J, Li ZF, Yan L, Gu J.
Cancer Invest (2006) 24(8): 747-53
Proteome chips: a future perspective
L A Kung
Expert Review of Proteomics (2006) 3(6): 565-567
Construction of an antibody microarray based on agarose-coated slides
Lv LL, Liu BC, Zhang CX, Tang ZM, Zhang L, Lu ZH.
Electrophoresis Early Edition: published 27-Dec-2006
A New Analytical Material-Enhanced Laser Desorption Ionization (MELDI) Based Approach for the Determination of Low-Mass Serum Constituents Using Fullerene Derivatives for Selective Enrichment
Rainer M. Vallant, Zoltan Szabo, Lukas Trojer, Muhammad Najam-ul-Haq, Matthias Rainer, Christian W. Huck, Rania Bakry, and Günther K. Bonn
JOURNAL OF PROTEOME RESEARCH (2007) 6(1): 44-53
Protein arrays: a versatile toolbox for target identification and monitoring of patient immune responses
Cekaite L, Hovig E, Sioud M.
Methods Mol Biol (2006) 360: 335-48
A Network-based Analysis of Polyanion-binding Proteins Utilizing Yeast Protein Arrays
Nazila Salamat-Miller, Jianwen Fang, Christopher W. Seidel, Aaron M. Smalter, Yassen Assenov, Mario Albrecht, and C. Russell Middaugh
Mol Cell Proteomics (2006) 5(12): 2263-2278
Shotgun Glycopeptide Capture Approach Coupled with Mass Spectrometry for Comprehensive Glycoproteomics
Bingyun Sun, Jeffrey A. Ranish, Angelita G. Utleg, James T. White, Xiaowei Yan, Biaoyang Lin, and Leroy Hood
Mol Cell Proteomics (2007) 6(1): 141-149
Protein Phosphorylation and Expression Profiling by Yin-Yang Multidimensional Liquid Chromatography (Yin-Yang MDLC) Mass Spectrometry
Jie Dai, Wen-Hai Jin, Quan-Hu Sheng, Chia-Hui Shieh, Jia-Rui Wu, and Rong Zeng
JOURNAL OF PROTEOME RESEARCH (2007) 6(1): 250-262
A Novel Quantitative Proteomics Strategy To Study Phosphorylation-Dependent Peptide-Protein Interactions
Fei Zhou, Jacob Galan, Robert L. Geahlen, and W. Andy Tao
JOURNAL OF PROTEOME RESEARCH (2007) 6(1): 133-140
Phosphopeptide modification and enrichment by oxidation-reduction condensation
Warthaka M, Karwowska-Desaulniers P, Pflum MK.
ACS Chem Biol (2006) 1(11): 697-701
Enrichment of phosphotyrosine proteome of human platelets by immunoprecipitation
Foy M, Harney DF, Wynne K, Maguire PB.
Methods Mol Biol (2006) 357: 313-8
One-Pot Solid-Phase Glycoblotting and Probing by Transoximization for High-Throughput Glycomics and Glycoproteomics
Shimaoka H, Kuramoto H, Furukawa JI, Miura Y, Kurogochi M, Kita Y, Hinou H, Shinohara Y, Nishimura SI.
Chemistry Early Edition: published 16-Jan-2007
Optimization of phosphopeptide elution conditions in immobilized Fe(III) affinity chromatography
Susumu Y. Imanishi, Vitaly Kochin, John E. Eriksson
PROTEOMICS (2007) 7(2): 174-176
From glycomics to functional glycomics of sugar chains: Identification of target proteins with functional changes using gene targeting mice and knock down cells of FUT8 as examples
Kondo A, Li W, Nakagawa T, Nakano M, Koyama N, Wang X, Gu J, Miyoshi E, Taniguchi N.
Biochim Biophys Acta (2006) 1764(12): 1881-9
Proteomic analysis of tyrosine phosphorylation during human liver transplantation
Emadali A, Metrakos P, Kalantari F, Boutros T, Boismenu D, Chevet E
Proteome Science (2007) 5: 1
Proteomic identification of s-nitrosylated proteins in endothelial cells
Martinez-Ruiz A, Lamas S.
Methods Mol Biol (2006) 357: 215-24
Investigation on glycosylation patterns of proteins from human liver cancer cell lines based on the multiplexed proteomics technology
Zhou H, Liu Y, Chui J, Guo K, Shun Q, Lu W, Jin H, Wei L, Yang P.
Arch Biochem Biophys Early Edition: published 2-Nov-2006
A comparative proteome and phosphoproteome analysis of differentially regulated proteins during fertilization in the self-incompatible species Solanum chacoense Bitt
Kateryna Vyetrogon, Faiza Tebbji, Douglas J. H. Olson, Andrew R. S. Ross, Daniel P. Matton
PROTEOMICS (2007) 7(2): 232-247
Comparison of the Methods for Profiling Glycoprotein Glycans: HUPO HGPI (Human Proteome Organisation Human Disease Glycomics/Proteome Initiative) Multi-institutional Study
Wada Y, Azadi P, Costello CE, Dell A, Dwek RA, Geyer H, Geyer R, Kakehi K, Karlsson NG, Kato K, Kawasaki N, Khoo KH, Kim S, Kondo A, Lattova E, Mechref Y, Miyoshi E, Nakamura K, Narimatsu H, Novotny MV, Packer NH, Perreault H, Peter-Katalinic J, Pohlentz G, Reinhold VN, Rudd PM, Suzuki A, Taniguchi N.
Glycobiology Early Edition: published 12-Jan-2007
Identification of yeast oxidized proteins Chromatographic top-down approach for identification of carbonylated, fragmented and cross-linked proteins in yeast
Mirzaei H, Regnier F.
J Chromatogr A Early Edition: published 21-Dec-2006
Reconstructing the Regulatory Kinase Pathways of Myogenesis from Phosphopeptide Data
Lawrence G. Puente, Sebastien Voisin, Robin E. C. Lee, and Lynn A. Megeney
Mol Cell Proteomics (2006) 5(12): 2244-2251
Identification of targets of phosphorylation in heart mitochondria
Gottlieb RA.
Methods Mol Biol (2006) 357: 127-38
Proteomic Analysis of the Subunit Composition of Complex I (NADH:Ubiquinone Oxidoreductase) From Bovine Heart Mitochondria
Fearnley IM, Carroll J, Walker JE.
Methods Mol Biol (2006) 357: 103-26
Study of posttranslational modifications in lenticular alphaA-Crystallin of mice using proteomic analysis techniques
Schaefer H, Chamrad DC, Herrmann M, Stuwe J, Becker G, Klose J, Blueggel M, Meyer HE, Marcus K.
Biochim Biophys Acta Early Edition: published 14-Oct-2006
Improved Validation of Peptide MS/MS Assignments Using Spectral Intensity Prediction
Shaojun Sun, Karen Meyer-Arendt, Brian Eichelberger, Robert Brown, Chia-Yu Yen, William M. Old, Kevin Pierce, Krzysztof J. Cios, Natalie G. Ahn, and Katheryn A. Resing
Mol Cell Proteomics (2007) 6(1): 1-17
De Novo Peptide Sequencing and Identification with Precision Mass Spectrometry
Ari M. Frank, Mikhail M. Savitski, Michael L. Nielsen, Roman A. Zubarev, and Pavel A. Pevzner
JOURNAL OF PROTEOME RESEARCH (2007) 6(1): 114-123
Combining Fluorescence Detection and Mass Spectrometric Analysis for Comprehensive and Quantitative Analysis of Redox-Sensitive Cysteines in Native Membrane Proteins
Evgeniy V. Petrotchenko, Dan Pasek, Phillip Elms, Nikolay V. Dokholyan, Gerhard Meissner, and Christoph H. Borchers
ANALYTICAL CHEMISTRY (2006) 78(23): 7959-7966
Rapid Enrichment of Phosphopeptides and Phosphoproteins from Complex Samples Using Magnetic Particles Coated with Alumina as the Concentrating Probes for MALDI MS Analysis
Cheng-Tai Chen, Wei-Yu Chen, Pei-Jane Tsai, Kun-Yi Chien, Jau-Song Yu, and Yu-Chie Chen
JOURNAL OF PROTEOME RESEARCH (2007) 6(1): 316-325
Chemical methods for glycoprotein discovery
Bond MR, Kohler JJ.
Curr Opin Chem Biol Early Edition: published 13-Dec-2006
Phosphoproteins of the chicken eggshell calcified layer
Karlheinz Mann, Jesper V. Olsen, Boris Ma?ek, Florian Gnad, Matthias Mann
PROTEOMICS (2007) 7(1): 106-115
Methodologies for characterizing phosphoproteins by mass spectrometry
Gafken PR, Lampe PD.
Cell Commun Adhes (2006) 13(5): 249-62
Using Phage Display to Select Antibodies Recognizing Post-translational Modifications Independently of Sequence Context
John W. Kehoe, Nileena Velappan, Monica Walbolt, Jytte Rasmussen, DaveKing, Jianlong Lou, Kristeene Knopp, Peter Pavlik, James D. Marks, Carolyn R. Bertozzi, and Andrew R. M. Bradbury
Mol Cell Proteomics (2006) 5(12): 2350-2363
Insulin protects islets from apoptosis via Pdx1 and specific changes in the human islet proteome
Johnson JD, Bernal-Mizrachi E, Alejandro EU, Han Z, Kalynyak TB, Li H, Beith JL, Gross J, Warnock GL, Townsend RR, Permutt MA, Polonsky KS.
Proc Natl Acad Sci U S A Early Edition: published 8-Dec-2006
Proteomics profiling of urine with surface enhanced laser desorption/ionization time of flight mass spectrometry
Roelofsen H, Alvarez-Llamas G, Schepers M, Landman K, Vonk RJ.
Proteome Science (2007) 5(1): 2
Interactome of Transforming Growth Factor- Type I Receptor (TRI): Inhibition of TGF Signaling by Epac1
Paolo Conrotto, Ihor Yakymovych, Mariya Yakymovych, and Serhiy Souchelnytskyi
JOURNAL OF PROTEOME RESEARCH (2007) 6(1): 287-297
Affibody Molecules in Protein Capture Microarrays: Evaluation of Multidomain Ligands and Different Detection Formats
Björn Renberg, Jon Nordin, Anna Merca, Mathias Uhlén, Joachim Feldwisch, Per-Åke Nygren, and Amelie Eriksson Karlström
JOURNAL OF PROTEOME RESEARCH (2007) 6(1): 171-179
Surface-Plasmon-Resonance-Based Chemical Proteomics: Efficient Specific Extraction and Semiquantitative Identification of Cyclic Nucleotide-Binding Proteins from Cellular Lysates by Using a Combination of Surface Plasmon Resonance, Sequential Elution and Liquid Chromatography-Tandem Mass Spectrometry
Visser NF, Scholten A, van den Heuvel RH, Heck AJ.
Chembiochem Early Edition: published 8-Jan-2007
Mechanism-based protein cross-linking probes to investigate carrier protein-mediated biosynthesis
Worthington AS, Rivera H, Torpey JW, Alexander MD, Burkart MD.
ACS Chem Biol (2006) 1(11): 687-91
Mass spectrometric identification of covalently bound cell wall proteins from the fission yeast Schizosaccharomyces pombe
de Groot PW, Yin QY, Weig M, Sosinska GJ, Klis FM, de Koster CG.
Yeast Early Edition: published 18-Jan-2007
Direct interaction with filamins modulates the stability and plasma membrane expression of CFTR
Thelin WR, Chen Y, Gentzsch M, Kreda SM, Sallee JL, Scarlett CO, Borchers CH, Jacobson K, Stutts MJ, Milgram SL.
J Clin Invest Early Edition: published 18-Jan-2007
Distinct and Overlapping Sets of SUMO-1 and SUMO-2 Target Proteins Revealed by Quantitative Proteomics
Alfred C. O. Vertegaal, Jens S. Andersen, Stephen C. Ogg, Ronald T. Hay, Matthias Mann, and Angus I. Lamond
Mol Cell Proteomics (2006) 5(12): 2298-2310
Rapid antibody quantification and generation of whole proteome antibody response profiles using LIPS (luciferase immunoprecipitation systems)
Burbelo PD, Ching KH, Mattson TL, Light JS, Bishop LR, Kovacs JA.
Biochem Biophys Res Commun Early Edition: published 7-Dec-2006
Relative Quantification of Proteins Across the Species Boundary Through the Use of Shared Peptides
Ambrosius P. L. Snijders, Bart de Koning, and Phillip C. Wright
JOURNAL OF PROTEOME RESEARCH (2007) 6(1): 97-104
AYUMS: an algorithm for completely automatic quantitation based on LC-MS/MS proteome data and its application to the analysis of signal transduction
Saito A, Nagasaki M, Oyama M, Kozuka-Hata H, Semba K, Sugano S, Yamamoto T, Miyano S
BMC Bioinformatics (2007) 8: 15
Quantitative proteomics analysis of the secretory pathway
Gilchrist A, Au CE, Hiding J, Bell AW, Fernandez-Rodriguez J, Lesimple S, Nagaya H, Roy L, Gosline SJ, Hallett M, Paiement J, Kearney RE, Nilsson T, Bergeron JJ.
Cell (2006) 127(6): 1265-81
Accurate determination of human serum transferrin isoforms: exploring metal-specific isotope dilution analysis as a quantitative proteomic tool
Busto ME, Montes-Bayon M, Sanz-Medel A.
Anal Chem (2006) 78(24): 8218-26
A review of quantitative methods for proteomic studies
Fenselau C.
J Chromatogr B Analyt Technol Biomed Life Sci Early Edition: published 8-Dec-2006
An informatic pipeline for the data capture and submission of quantitative proteomic data using iTRAQ
Siepen J, Swainston N, Jones A, Hart S, Hermjakob H, Jones P, Hubbard S
Proteome Science (2007) 5: 4
A review of quantitative methods for proteomic studies
Fenselau C.
J Chromatogr B Analyt Technol Biomed Life Sci Early Edition: published 8-Dec-2006
Recent Progress and Future Prospects in Protein Display Technologies as Tools for Proteomics
Matsumura, Nobutaka; Doi, Nobuhide; Yanagawa, Hiroshi
Current Proteomics (2006) 3(3): 199-215
Hypothesis: huntingtin may function in membrane association and vesicular trafficking
Truant R, Atwal R, Burtnik A.
Biochem Cell Biol (2006) 84(6): 912-917
Direct class I HLA antigen discovery to distinguish virus-infected and cancerous cells
Angela Wahl, Jon Weidanz, William Hildebrand
Expert Review of Proteomics (2006) 3(6): 641-652
Computational Tools for Modeling Protein Networks
Bergmann, Frank T.; Vallabhajosyula, Ravishankar R.; Sauro, Herbert M.
Current Proteomics (2006) 3(3): 181-197
Top-down mass spectrometry of integral membrane proteins
Julian Whitelegge, Frederic Halgand, Puneet Souda, Vlad Zabrouskov
Expert Review of Proteomics (2006) 3(6): 585-596
High-accuracy proteome maps of human body fluids
Schmidt A, Aebersold R
Genome Biology (2006) 7: 242
Act globally, think locally: systems biology addresses the PDZ domain
Spaller MR.
ACS Chem Biol (2006) 1(4): 207-10
Standards for validation of cancer biomarkers
O'connell CD, Atha And DH, Jakupciak JP.
Cancer Biomark (2005) 1(4-5): 233-9
Protein biomarkers of nephrotoxicity; a review and findings with cyclosporin A, a signal transduction kinase inhibitor and N-phenylanthranilic acid
Betton GR, Kenne K, Somers R, Marr A.
Cancer Biomark (2005) 1(1): 59-67
Mass spectrometry: uncovering the cancer proteome for diagnostics
van der Merwe DE, Oikonomopoulou K, Marshall J, Diamandis EP.
Adv Cancer Res (2006) 96: 23-50
The protein network as a tool for finding novel drug targets
Strong M, Eisenberg D.
Prog Drug Res (2007) 64: 191: 193-215
Mass spectrometry-based immunoassays for the next phase of clinical applications
Dobrin Nedelkov
Expert Review of Proteomics (2006) 3(6): 631-640
The use of high-dimensional biology (genomics, transcriptomics, proteomics, and metabolomics) to understand the preterm parturition syndrome
Romero R, Espinoza J, Gotsch F, Kusanovic J, Friel L, Erez O, Mazaki-Tovi S, Than N, Hassan S, Tromp G.
BJOG (2006) 113(s3): 118-135
Proteomics analysis in lung cancer: Challenges and opportunities
Kikuchi T, Carbone DP.
Respirology (2007) 12(1): 22-8
Proteomic applications of protein quantification by isotope-dilution mass spectrometry
Viveka Mayya, David K Han
Expert Review of Proteomics (2006) 3(6): 597-610
Biomarkers for the Development of Cancer Vaccines : Current Status
Copier J, Whelan M, Dalgleish A.
Mol Diagn Ther (2006) 10(6): 337-343
Clinical proteomics: the promises and challenges of mass spectrometry-based biomarker discovery
deVera IE, Katz JE, Agus DB.
Clin Adv Hematol Oncol (2006) 4(7): 541-9
Genome annotating proteomics pipelines: available tools
Ian Shadforth, Conrad Bessant
Expert Review of Proteomics (2006) 3(6): 621-629
Sample preparation for serum/plasma profiling and biomarker identification by mass spectrometry
Luque-Garcia JL, Neubert TA.
J Chromatogr A Early Edition: published 11-Dec-2006
A review of nanoelectrospray ionization applications for drug metabolism and pharmacokinetics
Wickremsinhe ER, Singh G, Ackermann BL, Gillespie TA, Chaudhary AK.
Curr Drug Metab (2006) 7(8): 913-28
Methodologies for characterizing phosphoproteins by mass spectrometry
Gafken PR, Lampe PD.
Cell Commun Adhes (2006) 13(5): 249-62
Two-dimensional electrophoresis in proteome expression analysis
Lopez JL.
J Chromatogr B Analyt Technol Biomed Life Sci Early Edition: published 21-Dec-2006
Molecular interaction network of the Hsp90 chaperone system
Zhao R, Houry WA.
Adv Exp Med Biol (2007) 594: 27-36
Protein profiling of pancreatic islets
Henrik Ortsater, Peter Bergsten
Expert Review of Proteomics (2006) 3(6): 665-675
The Concept of Protein Mosaics: Physiological Role and Relevance for Prion Disease
Francesco Agnati, Luigi; Genedani, Susanna; Carone, Chiara; Leo, Giuseppina; Fuxe, Kjell
Current Proteomics (2006) 3(3): 171-179
Proximity ligation: a specific and versatile tool for the proteomic era
Soderberg O, Leuchowius KJ, Kamali-Mog