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SPS' DigestIssue 40, 5-Apr-2007 |
The extant core bacterial proteome is an archive of the origin of life
Antoine Danchin, Gang Fang, Stanislas Noria
PROTEOMICS (2007) 7(6): 875-889
Multivariate analysis of 2-DE protein patterns - Practical approaches
Susanne Jacobsen, Harald Grove, Kristina Nedenskov Jensen, Helle A. Sørensen, Flemming Jessen, Kristin Hollung, Anne Kjersti Uhlen, Bo M. Jørgensen, Ellen Mosleth Færgestad, Ib Søndergaard
ELECTROPHORESIS (2007) 28(8): 1289-1299
Identifying functional modules in the physical interactome of Saccharomyces cerevisiae
Shuye Pu, Jim Vlasblom, Andrew Emili, Jack Greenblatt, Shoshana J. Wodak
PROTEOMICS (2007) 7(6): 944-960
Development and validation of a spectral library searching method for peptide identification from MS/MS
Henry Lam, Eric W. Deutsch, James S. Eddes, Jimmy K. Eng, Nichole King, Stephen E. Stein, Ruedi Aebersold
PROTEOMICS (2007) 7(5): 655-667
From proteomics to systems biology of bacterial pathogens: Approaches, tools, and applications
Uwe Plikat, Hans Voshol, Yvonne Dangendorf, Brigitte Wiedmann, Piroska Devay, Dieter Müller, Urs Wirth, Joseph Szustakowski, Gung-Wei Chirn, Bruno Inverardi, Xiaoling Puyang, Kara Brown, Heather Kamp, Sjouke Hoving, Alexandra Ruchti, Nathalie Brendlen, Ron Peterson, Jennifer Buco, Jan van Oostrum, Manuel C. Peitsch
PROTEOMICS (2007) 7(6): 992-1003
Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry
Elias JE, Gygi SP.
Nat Methods (2007) 4(3): 207-14
A review of standards for data exchange within systems biology
Lena Strömbäck, David Hall, Patrick Lambrix
PROTEOMICS (2007) 7(6): 857-867
Enabling high-throughput data management for systems biology: The Bioinformatics Resource Manager
Shah AR, Singhal M, Klicker KR, Stephan EG, Steven Wiley H, Waters KM.
Bioinformatics Early Edition: published 25-Feb-2007
EBP, a Program for Protein Identification Using Multiple Tandem Mass Spectrometry Datasets
Thomas S. Price, Margaret B. Lucitt, Weichen Wu, David J. Austin, Angel Pizarro, Anastasia K. Yocum, Ian A. Blair, Garret A. FitzGerald, and Tilo Grosser
Mol Cell Proteomics (2007) 6(3): 527-536
Automated reporting from gel-based proteomics experiments using the open source Proteios database application
Fredrik Levander, Morten Krogh, Kristofer Wårell, Per Gärdén, Peter James, Jari Häkkinen
PROTEOMICS (2007) 7(5): 668-674
Proteome informatics for cancer research: From molecules to clinic
Vladimir Brusic, Ovidiu Marina, Catherine J. Wu, Ellis L. Reinherz
PROTEOMICS (2007) 7(6): 976-991
Prediction of nitrogen metabolism-related genes in Anabaena by kernel-based network analysis
Shinobu Okamoto, Yoshihiro Yamanishi, Shigeki Ehira, Shuichi Kawashima, Koichiro Tonomura, Minoru Kanehisa
PROTEOMICS (2007) 7(6): 900-909
Validated MALDI-TOF/TOF Mass Spectra for Protein Standards
Falkner JA, Kachman M, Veine DM, Walker A, Strahler JR, Andrews PC.
J Am Soc Mass Spectrom Early Edition: published 26-Feb-2007
WI-PHI: A weighted yeast interactome enriched for direct physical interactions
Lars Kiemer, Stefano Costa, Marius Ueffing, Gianni Cesareni
PROTEOMICS (2007) 7(6): 932-943
Identification of aluminum-responsive proteins in rice roots by a proteomic approach: Cysteine synthase as a key player in Al response
Qiaosong Yang, Yuqi Wang, Jianjun Zhang, Weiping Shi, Chunmei Qian, Xinxiang Peng
PROTEOMICS (2007) 7(5): 737-749
BDNF Induces Widespread Changes in Synaptic Protein Content and Up-Regulates Components of the Translation Machinery: An Analysis Using High-Throughput Proteomics
Lujian Liao, Julie Pilotte, Tao Xu, Catherine C. L. Wong, Gerald M. Edelman, Peter Vanderklish, and John R. Yates, III
JOURNAL OF PROTEOME RESEARCH (2007) 6(3): 1059-1071
Proteomic analysis of the shistosome tegument and its surface membranes
Braschi S, Borges WC, Wilson RA.
Mem Inst Oswaldo Cruz (2006) 101(Suppl 1): 205-12
Crucial Role of Antioxidant Proteins and Hydrolytic Enzymes in Pathogenicity of Penicillium expansum: Analysis Based on Proteomics Approach
Guozheng Qin, Shiping Tian, Zhulong Chan, and Boqiang Li
Mol Cell Proteomics (2007) 6(3): 425-438
Strain-resolved community proteomics reveals recombining genomes of acidophilic bacteria
Lo I, Denef VJ, Verberkmoes NC, Shah MB, Goltsman D, Dibartolo G, Tyson GW, Allen EE, Ram RJ, Detter JC, Richardson P, Thelen MP, Hettich RL, Banfield JF.
Nature Early Edition: published 7-Mar-2007
Metaproteomic Analysis of a Bacterial Community Response to Cadmium Exposure
Carla M. R. Lacerda, Leila H. Choe, and Kenneth F. Reardon
JOURNAL OF PROTEOME RESEARCH (2007) 6(3): 1145-1152
The Alliance for Cellular Signaling Plasmid Collection: A Flexible Resource for Protein Localization Studies and Signaling Pathway Analysis
Joelle R. Zavzavadjian, Sam Couture, Wei Sun Park, James Whalen, Stephen Lyon, Genie Lee, Eileen Fung, Qingli Mi, Jamie Liu, Estelle Wall, Leah Santat, Kavitha Dhandapani, Christine Kivork, Adrienne Driver, Xiaocui Zhu, Mi Sook Chang, Baljinder Randhawa, Elizabeth Gehrig, Heather Bryan, Mary Verghese, Andreia Maer, Brian Saunders, Yuhong Ning, Shankar Subramaniam, Tobias Meyer, Melvin I. Simon, Nancy O'Rourke, Grischa Chandy, and Iain D. C. Fraser
Mol Cell Proteomics (2007) 6(3): 413-424
Proliferative Effect of Calcitonin Gene-related Peptide is Induced by at least Five Proteins as Identified by Proteome Profiling
Pluder F, Sinz A, Beck-Sickinger AG.
Chem Biol Drug Des (2007) 69(1): 14-22
An Antiproliferative Genetic Screening Identifies a Peptide Aptamer That Targets Calcineurin and Up-regulates Its Activity
Benoit de Chassey, Ivan Mikaelian, Anne-Laure Mathieu, Marc Bickle, Delphine Olivier, Didier Negre, Francois-Loic Cosset, Brian B. Rudkin, and Pierre Colas
Mol Cell Proteomics (2007) 6(3): 451-459
Analysis of the Ribosomal Protein S19 Interactome
Stefania Orru, Anna Aspesi, Marta Armiraglio, Marianna Caterino, Fabrizio Loreni, Margherita Ruoppolo, Claudio Santoro, and Irma Dianzani
Mol Cell Proteomics (2007) 6(3): 382-393
The proteome and transcriptome analysis of Bacillus subtilis in response to salicylic acid
Nguyen Van Duy, Ulrike Mäder, Ngoc Phuong Tran, Jean-François Cavin, Le Thi Tam, Dirk Albrecht, Michael Hecker, Haike Antelmann
PROTEOMICS (2007) 7(5): 698-710
Integrated Proteomics and Genomics Strategies Bring New Insight into Candida albicans Response upon Macrophage Interaction
Elena Fernandez-Arenas, Virginia Cabezon, Clara Bermejo, Javier Arroyo, Cesar Nombela, Rosalia Diez-Orejas, and Concha Gil
Mol Cell Proteomics (2007) 6(3): 460-478
Proteomic analysis of macrophages: A new way to identify novel cell-surface antigens
Zhang L, Lun Y, Yan D, Yu L, Ma W, Du B, Zhu X.
J Immunol Methods Early Edition: published 30-Jan-2007
Various Members of the E2F Transcription Factor Family Interact in vivo with the Corepressor Alien
Niko Escher, Robert Kob, Stephan P. Tenbaum, Michael Eisold, Aria Baniahmad, Ferdinand von Eggeling, and Christian Melle
JOURNAL OF PROTEOME RESEARCH (2007) 6(3): 1158-1164
Proteomic analysis of the oxidative stress response in Candida albicans
Harald Kusch, Susanne Engelmann, Dirk Albrecht, Joachim Morschhäuser, Michael Hecker
PROTEOMICS (2007) 7(5): 686-697
Cellular processes underlying maturation of P19 neurons: Changes in protein folding regimen and cytoskeleton organization
Alex Inberg, Yoel Bogoch, Yaniv Bledi, Michal Linial
PROTEOMICS (2007) 7(6): 910-920
Proteomic changes in Debaryomyces hansenii upon exposure to NaCl stress
Gori K, Hebraud M, Chambon C, Mortensen HD, Arneborg N, Jespersen L.
FEMS Yeast Res (2007) 7(2): 293-303
A proteome study of the proliferation of cultured Medicago truncatula protoplasts
Femke de Jong, Ulrike Mathesius, Nijat Imin, Barry G. Rolfe
PROTEOMICS (2007) 7(5): 722-736
Genomic and proteomic approaches towards an understanding of sleep
O'hara BF, Ding J, Bernat RL, Franken P.
CNS Neurol Disord Drug Targets (2007) 6(1): 71-81
Proteomic Analyses of Songbird (Zebra finch; Taeniopygia guttata) Retina
Stephanie Sloley, Shannon Smith, Mabel Algeciras, Valerie Cavett, Jennifer A. Caldwell Busby, Sarah London, David F. Clayton, and Sanjoy K. Bhattacharya
JOURNAL OF PROTEOME RESEARCH (2007) 6(3): 1093-1100
A Network Analysis of Changes in Molecular Interactions in Cellular Signaling
Oda Stoevesandt, Karsten Kohler, Susann Wolf, Thomas Andre, Wilfred Hummel, and Roland Brock
Mol Cell Proteomics (2007) 6(3): 503-513
Analysis of Aqueous Glue Coating Proteins on the Silk Fibers of the Cob Weaver, Latrodectus hesperus
Hu X, Yuan J, Wang X, Vasanthavada K, Falick AM, Jones PR, Mattina CL, Vierra CA.
Biochemistry Early Edition: published 21-Feb-2007
Proteomics in the garden: the Arabidopsis 2010 Project
Katie Cottingham
JOURNAL OF PROTEOME RESEARCH (2007) 6(3): 934
Proteome analysis of embryogenic cell suspensions of cowpea (Vigna unguiculata)
Nogueira FC, Goncalves EF, Jereissati ES, Santos M, Costa JH, Oliveira-Neto OB, Soares AA, Domont GB, Campos FA.
Plant Cell Rep Early Edition: published 28-Feb-2007
A Proteomics Dissection of Arabidopsis thaliana Vacuoles Isolated from Cell Culture
Michel Jaquinod, Florent Villiers, Sylvie Kieffer-Jaquinod, Veronique Hugouvieux, Christophe Bruley, Jerome Garin, and Jacques Bourguignon
Mol Cell Proteomics (2007) 6(3): 394-412
Proteomics Analysis of Thermoplasma acidophilum with a Focus on Protein Complexes
Na Sun, Florian Beck, Roland Wilhelm Knispel, Frank Siedler, Beatrix Scheffer, Stephan Nickell, Wolfgang Baumeister, and Istvan Nagy
Mol Cell Proteomics (2007) 6(3): 492-502
SELDI-TOF-MS analysis of chloroquine resistant and sensitive Plasmodium falciparum strains
Sasa Koncarevic, Ralf Bogumil, Katja Becker
PROTEOMICS (2007) 7(5): 711-721
Proteomic and transcriptomic analysis of rice mature seed-derived callus differentiation
Lan Yin, Yong Tao, Kang Zhao, Jianmin Shao, Xiaobing Li, Guozhen Liu, Siqi Liu, Lihuang Zhu
PROTEOMICS (2007) 7(5): 755-768
Mass spectrometric analysis of the individual variability of Bothrops jararaca venom peptide fraction. Evidence for sex-based variation among the bradykinin-potentiating peptides
Pimenta DC, Prezoto BC, Konno K, Melo RL, Furtado MF, Camargo AC, Serrano SM.
Rapid Commun Mass Spectrom (2007) 21(6): 1034-1042
Proteome-wide Identification of HtrA2/Omi Substrates
Lieselotte Vande Walle, Petra Van Damme, Mohamed Lamkanfi, Xavier Saelens, Joël Vandekerckhove, Kris Gevaert, and Peter Vandenabeele
JOURNAL OF PROTEOME RESEARCH (2007) 6(3): 1006-1015
Glycogen Synthase Kinase 3 (GSK3) Regulates Differentiation and Proliferation in Neural Stem Cells from the Rat Subventricular Zone
Martin H. Maurer, Jens O. Brömme, Robert E. Feldmann, Jr., Anne Järve, Fatemeh Sabouri, Heinrich F. Bürgers, Dominik W. Schelshorn, Carola Krüger, Armin Schneider, and Wolfgang Kuschinsky
JOURNAL OF PROTEOME RESEARCH (2007) 6(3): 1198-1208
A Comprehensive Proteomics and Genomics Analysis Reveals Novel Transmembrane Proteins in Human Platelets and Mouse Megakaryocytes Including G6b-B, a Novel Immunoreceptor Tyrosine-based Inhibitory Motif Protein
Yotis A. Senis, Michael G. Tomlinson, Angel Garcia, Stephanie Dumon, Victoria L. Heath, John Herbert, Stephen P. Cobbold, Jennifer C. Spalton, Sinem Ayman, Robin Antrobus, Nicole Zitzmann, Roy Bicknell, Jon Frampton, Kalwant S. Authi, Ashley Martin, Michael J. O. Wakelam, and Stephen P. Watson
Mol Cell Proteomics (2007) 6(3): 548-564
The plasticity of global proteome and genome expression analyzed in closely related W3110 and MG1655 strains of a well-studied model organism, Escherichia coli-K12
Vijayendran C, Polen T, Wendisch VF, Friehs K, Niehaus K, Flaschel E.
J Biotechnol Early Edition: published 14-Jan-2007
Proteomic approach for identification and characterization of novel immunostimulatory proteins from soluble antigens of Leishmania donovani promastigotes
Shraddha Kumari Gupta, Brijesh Singh Sisodia, Sudhir Sinha, Krishnan Hajela, Sita Naik, Ajit Kumar Shasany, Anuradha Dube
PROTEOMICS (2007) 7(5): 816-823
Shotgun immunoproteomics to identify disease-associated bacterial antigens: Application to human colon cancer
Harold Tjalsma, Edwin Lasonder, Marie Schöller-Guinard, Dorine W. Swinkels
PROTEOMICS - Clinical Applications (2007) 1(4): 429-434
Increased Blood Levels of IgG Reactive with Secreted Streptococcus pyogenes Proteins in Chronic Plaque Psoriasis
El-Rachkidy RG, Hales JM, Freestone PP, Young HS, Griffiths CE, Camp RD.
J Invest Dermatol Early Edition: published 8-Mar-2007
Anticancer effects of aloe-emodin on HepG2 cells: Cellular and proteomic studies
Guo Dong Lu, Han-Ming Shen, Choon Nam Ong, Maxey C. M. Chung
PROTEOMICS - Clinical Applications (2007) 1(4): 410-419
Expression of glycolytic enzymes is increased in pancreatic cancerous tissues as evidenced by proteomic profiling by two-dimensional electrophoresis and liquid chromatography-mass spectrometry/mass spectrometry
Mikuriya K, Kuramitsu Y, Ryozawa S, Fujimoto M, Mori S, Oka M, Hamano K, Okita K, Sakaida I, Nakamura K.
Int J Oncol (2007) 30(4): 849-55
HIV-1 infected monocyte-derived macrophages affect the human brain microvascular endothelial cell proteome: New insights into blood-brain barrier dysfunction for HIV-1-associated dementia
Ricardo-Dukelow M, Kadiu I, Rozek W, Schlautman J, Persidsky Y, Ciborowski P, Kanmogne GD, Gendelman HE.
J Neuroimmunol Early Edition: published 22-Feb-2007
The Upregulation of Expressed Proteins in HepG2 Cells Transfected by the Recombinant Plasmid-containing HBx Gene
He Y, Yang F, Wang F, Song SX, Li DA, Guo YJ, Sun SH.
Scand J Immunol (2007) 65(3): 249-56
Differential Protein Expression Profile in the Intestinal Epithelium from Patients with Inflammatory Bowel Disease
Anna Shkoda, Tanja Werner, Hannelore Daniel, Manuela Gunckel, Gerhard Rogler, and Dirk Haller
JOURNAL OF PROTEOME RESEARCH (2007) 6(3): 1114-1125
Proteomic of lipid rafts in the exocrine pancreas from diet-induced obese rats
Berkane AA, Nguyen HT, Tranchida F, Waheed AA, Deyris V, Tchiakpe L, Fasano C, Nicoletti C, Desseaux V, Ajandouz EH, Comeau D, Comeau L, Hiol A.
Biochem Biophys Res Commun Early Edition: published 15-Feb-2007
Proteomic expression profiling of thyroid neoplasms
Till Braunschweig, Klaus Kaserer, Joon-Yong Chung, Sven Bilke, David Krizman, Vladimir Knezevic, Stephen M. Hewitt
PROTEOMICS - Clinical Applications (2007) 1(3): 264-271
A Limited Screen for Protein Interactions Reveals New Roles for Protein Phosphatase 1 in Cell Cycle Control and Apoptosis
Guillermo Flores-Delgado, Cathy W. Y. Liu, Richard Sposto, and Norbert Berndt
JOURNAL OF PROTEOME RESEARCH (2007) 6(3): 1165-1175
A proteomic investigation of glomerular podocytes from a Denys-Drash Syndrome patient with a mutation in the Wilms tumour suppressor gene WT1
Rebecca L. Viney, Avril A. Morrison, Lambert P. van den Heuvel, Lan Ni, Peter W. Mathieson, Moin A. Saleem, Michael R. Ladomery
PROTEOMICS (2007) 7(5): 804-815
Research Profile: N-glycan profiling to identify pancreatic cancer biomarkers
Laura Tomky Cassiday
JOURNAL OF PROTEOME RESEARCH (2007) 6(3): 933
Developmental vitamin D deficiency alters brain protein expression in the adult rat: Implications for neuropsychiatric disorders
Lionel Almeras, Darryl Eyles, Philippe Benech, Daniel Laffite, Claude Villard, Angela Patatian, Jose Boucraut, Alan Mackay-Sim, John McGrath, François Féron
PROTEOMICS (2007) 7(5): 769-780
Alterations in the diabetic myocardial proteome coupled with increased myocardial oxidative stress underlies diabetic cardiomyopathy
Hamblin M, Friedman DB, Hill S, Caprioli RM, Smith HM, Hill MF.
J Mol Cell Cardiol Early Edition: published 10-Jan-2007
Proteomic and transcriptomic analysis of human CD8+ T lymphocytes over-expressing telomerase
Lynne Thadikkaran, Olivier Menzel, Jean-Daniel Tissot, Nathalie Rufer
PROTEOMICS - Clinical Applications (2007) 1(3): 299-311
Proteomic profiling of proteins dysregulted in Chinese esophageal squamous cell carcinoma
Du XL, Hu H, Lin DC, Xia SH, Shen XM, Zhang Y, Luo ML, Feng YB, Cai Y, Xu X, Han YL, Zhan QM, Wang MR.
J Mol Med Early Edition: published 22-Feb-2007
Immunosuppressive activity of serum taken from a liver transplant recipient after withdrawal of immunosuppressants
Hsu LW, Goto S, Nakano T, Lai CY, Lin YC, Kao YH, Chen SH, Cheng YF, Jawan B, Chiu KW, Chen CL.
Transpl Immunol (2007) 17(2): 137-46
Proteomic Biomarkers of Intra-amniotic Inflammation: Relationship with Funisitis and Early-onset Sepsis in the Premature Neonate
Buhimschi CS, Buhimschi IA, Abdel-Razeq S, Rosenberg VA, Thung SF, Zhao G, Wang E, Bhandari V.
Pediatr Res (2007) 61(3): 318-24
2-D DIGE and MALDI-TOF-MS analysis of the serum proteome in human osteosarcoma
Song Jin, Jing-Nan Shen, Qian-Chen Guo, Jia-Guo Zhou, Jin Wang, Gang Huang, Chang-ye Zou, Jun-qiang Yin, Shao-Jun Liu, Wei Liu, Ming-Tao Li, Li-Na Wang
PROTEOMICS - Clinical Applications (2007) 1(3): 272-285
Specific peptides identified by mass spectrometry in placental tissue from pregnancies complicated by early onset preeclampsia attained by laser capture dissection
Christianne J. M. de Groot, Co?kun Güzel, Régine P. M. Steegers-Theunissen, M. de Maat, Pieter Derkx, Eva-Maria Roes, Ron M. A. Heeren, Theo M. Luider, Eric A. P. Steegers
PROTEOMICS - Clinical Applications (2007) 1(3): 325-335
Proteomic patterns predict acute graft-versus-host disease after allogeneic hematopoietic stem cell transplantation
Weissinger EM, Schiffer E, Hertenstein B, Ferrara JL, Holler E, Stadler M, Kolb HJ, Zander A, Zurbig P, Kellmann M, Ganser A.
Blood Early Edition: published 5-Mar-2007
Proteomics-based identification of HSP60 as a tumor-associated antigen in colorectal cancer
Yujun He, Yuzhang Wu, Zhirong Mou, Wanlin Li, Liyun Zou, Tao Fu, Anping Zhang, Debing Xiang, Hualiang Xiao, Xiangfeng Wang
PROTEOMICS - Clinical Applications (2007) 1(3): 336-342
Differential expression of multiple anti-apoptotic proteins in epidermis of IGF-1 transgenic mice as revealed by 2-dimensional gel electrophoresis/mass spectrometry analysis
Shen J, Riggs PK, Hensley SC, Schroeder LJ, Traner AR, Kochan KJ, Person MD, Digiovanni J.
Mol Carcinog Early Edition: published 1-Mar-2007
Application of immunoproteomics to leptospirosis: towards clinical diagnostics and vaccine discovery
Uraiwan Kositanont, Putita Saetun, Chartchai Krittanai, Galayanee Doungchawee, Chanwit Tribuddharat, Visith Thongboonkerd
PROTEOMICS - Clinical Applications (2007) 1(4): 400-409
Formation of 3-nitrotyrosines in carbonic anhydrase III is a sensitive marker of oxidative stress in skeletal muscle
Aphrodite Vasilaki, Deborah Simpson, Francis McArdle, Lynne McLean, Robert J. Beynon, Holly Van Remmen, Arlan G. Richardson, Anne McArdle, John A Faulkner, Malcolm J. Jackson
PROTEOMICS - Clinical Applications (2007) 1(4): 362-372
Proteomic analysis of alpha-1-antitrypsin in immunoglobulin A nephropathy
Noh-Jin Kwak, Eun-Hui Wang, Il-Young Heo, Dong-Chan Jin, Jung-Ho Cha, Kweon-Haeng Lee, Chul-Woo Yang, Chang-Suk Kang, Yeong-Jin Choi
PROTEOMICS - Clinical Applications (2007) 1(4): 420-428
Proteomic Identification of Lynchpin Urokinase Plasminogen Activator Receptor Protein Interactions Associated with Epithelial Cancer Malignancy
Rohit G. Saldanha, Mark P. Molloy, Khalil Bdeir, Douglas B. Cines, Xiaomin Song, Pauliina M. Uitto, Paul H. Weinreb, Shelia M. Violette, and Mark S. Baker
JOURNAL OF PROTEOME RESEARCH (2007) 6(3): 1016-1028
Cathepsin D Is Secreted from M-BE Cells: Its Potential Role as a Biomarker of Lung Cancer
Xiaomin Lou, Ting Xiao, Kang Zhao, Hao Wang, Hongwei Zheng, Dongmei Lin, Youyong Lu, Yanning Gao, Shujun Cheng, Siqi Liu, and Ningzhi Xu
JOURNAL OF PROTEOME RESEARCH (2007) 6(3): 1083-1092
Genomics and proteomics approaches in understanding tumor angiogenesis
Mittal V, Nolan DJ.
Expert Rev Mol Diagn (2007) 7(2): 133-47
Two-dimensional gel electrophoresis of apolipoprotein C-III and other serum glycoproteins for the combined screening of human congenital disorders of O- and N-glycosylation
Arnaud Bruneel, Tiphaine Robert, Dirk J. Lefeber, Guillaume Benard, Emilie Loncle, Amel Djedour, Geneviève Durand, Nathalie Seta
PROTEOMICS - Clinical Applications (2007) 1(3): 321-324
N-linked Glycosylation Profiling of Pancreatic Cancer Serum Using Capillary Liquid Phase Separation Coupled with Mass Spectrometric Analysis
Jia Zhao, Weilian Qiu, Diane M. Simeone, and David M. Lubman
JOURNAL OF PROTEOME RESEARCH (2007) 6(3): 1126-1138
Searching for potential biomarkers of cisplatin resistance in human ovarian cancer using a label-free LC/MS-based protein quantification method
Dawn P. G. Fitzpatrick, Jin-Sam You, Kerry G. Bemis, Jean-Pierre Wery, James R. Ludwig, Mu Wang
PROTEOMICS - Clinical Applications (2007) 1(3): 246-263
HSP27 and HSP70 interact with CD10 in C4-2 prostate cancer cells
Dall'era MA, Oudes A, Martin DB, Liu AY.
Prostate Early Edition: published 6-Mar-2007
Proteome informatics for cancer research: From molecules to clinic
Vladimir Brusic, Ovidiu Marina, Catherine J. Wu, Ellis L. Reinherz
PROTEOMICS (2007) 7(6): 976-991
Analysis of the HLA class I associated peptide repertoire in a hepatocellular carcinoma cell line reveals tumor-specific peptides as putative targets for immunotherapy
Iñaki Alvarez, Montserrat Carrascal, Francesc Canals, Laia Muixí, Joaquín Abián, Dolores Jaraquemada
PROTEOMICS - Clinical Applications (2007) 1(3): 286-298
Multiple biomarkers in molecular oncology. I. Molecular diagnostics applications in cervical cancer detection
Malinowski DP.
Expert Rev Mol Diagn (2007) 7(2): 117-31
The immunological role of lipid transfer/metabolic proteins in liver transplantation tolerance
Nakano T, Chen CL, Goto S, Lai CY, Hsu LW, Kawamoto S, Sasaki T, Lin YC, Kao YH, Ohmori N, Goto T, Sato S, Jawan B, Ono K, Cheng YF.
Transpl Immunol (2007) 17(2): 130-6
Reversal of diabetes-evoked changes in mitochondrial protein expression of cardiac left ventricle by treatment with a copper(II)-selective chelator
Mia Jüllig, Xiuyin Chen, Anthony J. Hickey, David J. Crossman, Aimin Xu, Yu Wang, David R. Greenwood, Yee Soon Choong, Sarah J. Schönberger, Martin J. Middleditch, Anthony R. J. Phillips, Garth J. S. Cooper
PROTEOMICS - Clinical Applications (2007) 1(4): 387-399
A phase II and pharmacodynamic study of gefitinib in patients with refractory or recurrent epithelial ovarian cancer
Posadas EM, Liel MS, Kwitkowski V, Minasian L, Godwin AK, Hussain MM, Espina V, Wood BJ, Steinberg SM, Kohn EC.
Cancer Early Edition: published 1-Mar-2007
Identification of early markers for symptomatic vasospasm in human cerebral microdialysate after subarachnoid hemorrhage: Preliminary results of a proteome-wide screening
Maurer MH, Haux D, Sakowitz OW, Unterberg AW, Kuschinsky W.
J Cereb Blood Flow Metab Early Edition: published 28-Feb-2007
Proteomic analysis of cisplatin-induced cochlear damage: Methods and early changes in protein expression
Coling DE, Ding D, Young R, Lis M, Stofko E, Blumenthal KM, Salvi RJ.
Hear Res Early Edition: published 24-Jan-2007
Shotgun proteomics implicates protease inhibition and complement activation in the antiinflammatory properties of HDL
Vaisar T, Pennathur S, Green PS, Gharib SA, Hoofnagle AN, Cheung MC, Byun J, Vuletic S, Kassim S, Singh P, Chea H, Knopp RH, Brunzell J, Geary R, Chait A, Zhao XQ, Elkon K, Marcovina S, Ridker P, Oram JF, Heinecke JW.
J Clin Invest (2007) 117(3): 746-756
Proteomic Identification of Urinary Biomarkers of Diabetic Nephropathy
Rao PV, Lu X, Standley M, Pattee P, Neelima G, Girisesh G, Dakshinamurthy KV, Roberts CT Jr, Nagalla SR.
Diabetes Care (2007) 30(3): 629-637
High throughput proteomic strategies for identifying tumour-associated antigens
Gunawardana CG, Diamandis EP.
Cancer Lett Early Edition: published 14-Feb-2007
Proteomic analysis of spinal protein expression in rats exposed to repeated intrathecal morphine injection
Hao-Ai Shui, Shung-Tai Ho, Jhi-Joung Wang, Chin-Chen Wu, Chih-Huan Lin, Yuan-Xiang Tao, Wen-Jinn Liaw
PROTEOMICS (2007) 7(5): 796-803
Mass Spectrometry Analysis of the Native Protein Complex Containing Actinin-4 in Prostate Cancer Cells
Tomohiko Hara, Kazufumi Honda, Miki Shitashige, Masaya Ono, Hideyasu Matsuyama, Katsusuke Naito, Setsuo Hirohashi, and Tesshi Yamada
Mol Cell Proteomics (2007) 6(3): 479-491
The discovery of biomarkers for type 2 diabetic nephropathy by serum proteome analysis
Eun-Hee Cho, Mi-Ryung Kim, Hyun-Jung Kim, Do-Yeon Lee, Pan-Kyeom Kim, Kyung Mook Choi, Ohk-Hyun Ryu, Chan-Wha Kim
PROTEOMICS - Clinical Applications (2007) 1(4): 352-361
Toward the discovery of new biomarkers of hepatocellular carcinoma by proteomics
Santamaria E, Munoz J, Fernandez-Irigoyen J, Prieto J, Corrales FJ.
Liver Int (2007) 27(2): 163-73
Research Profile: Antibody arrays shed light on PP1’s possible role in lung cancer
Katie Cottingham
JOURNAL OF PROTEOME RESEARCH (2007) 6(3): 932
Prediction of Diabetic Nephropathy Using Urine Proteomic Profiling 10 Years Prior to Development of Nephropathy
Otu HH, Can H, Spentzos D, Nelson RG, Hanson RL, Looker HC, Knowler WC, Monroy M, Libermann TA, Karumanchi SA, Thadhani R.
Diabetes Care (2007) 30(3): 638-643
The murine plasma protein response to polymicrobial intra-abdominal sepsis
Jonathan E. McDunn, R. Reid Townsend, J. Perren Cobb
PROTEOMICS - Clinical Applications (2007) 1(4): 373-386
Altered Chaperone and Protein Turnover Regulators Expression in Cultured Skin Fibroblasts from Type 1 Diabetes Mellitus with Nephropathy
Paolo Tessari, Lucia Puricelli, Elisabetta Iori, Giorgio Arrigoni, Monica Vedovato, Peter James, Anna Coracina, and Renato Millioni
JOURNAL OF PROTEOME RESEARCH (2007) 6(3): 976-986
HDL proteomics: pot of gold or Pandora's box?
Reilly MP, Tall AR.
J Clin Invest (2007) 117(3): 595-8
PROTEOMIC ANALYSIS OF HEPATIC IRON OVERLOAD IN MICE SUGGESTS DYSREGULATION OF UREA CYCLE AND IMPAIRMENT OF FATTY ACID OXIDATION AND THE METHYLATION CYCLE
Petrak J, Myslivcova D, Man P, Cmejla R, Cmejlova J, Vyoral D, Elleder M, Vulpe CD.
Am J Physiol Gastrointest Liver Physiol Early Edition: published 15-Feb-2007
Discovery of stage-related proteins in esophageal squamous cell carcinoma using proteomic analysis
Dong-Ping Liu, Robert Z. Qi, Yan Wang, Ping-Ping Chen, H. Phillip Koeffler, Dong Xie
PROTEOMICS - Clinical Applications (2007) 1(3): 312-320
The rational design of biological complexity: A deceptive metaphor
Marc H. V. Van Regenmortel
PROTEOMICS (2007) 7(6): 965-975
Urine proteomics for the early diagnosis of acute glomerulonephritis: Has the time come?
Boumpas DT, Kuroiwa T.
Arthritis Rheum (2007) 56(3): 705-709
Proteomics: a review and an example using the reticulocyte membrane proteome
Prenni JE, Avery AC, Olver CS.
Vet Clin Pathol (2007) 36(1): 13-24
Proteome analysis of virulence factor regulated by autoinducer-2-like activity in Escherichia coli O157:H7
Kim Y, Oh S, Ahn EY, Imm JY, Oh S, Park S, Kim SH.
J Food Prot (2007) 70(2): 300-7
Analysis of nuclear proteome in C57 mouse liver tissue by a nano-flow 2-D-LC-ESI-MS/MS approach
Zhang J, Xu X, Shen H, Zhang X.
J Sep Sci (2006) 29(17): 2635-46
Cellular processes underlying maturation of P19 neurons: Changes in protein folding regimen and cytoskeleton organization
Alex Inberg, Yoel Bogoch, Yaniv Bledi, Michal Linial
PROTEOMICS (2007) 7(6): 910-920
Characterization of Lipid Rafts from Medicago Truncatula Root Plasma Membranes: A Proteomic Study Reveals the Presence of a Raft-associated Redox System
Lefebvre B, Furt F, Hartmann MA, Michaelson LV, Carde JP, Sargueil-Boiron F, Rossignol M, Napier JA, Cullimore J, Bessoule JJ, Mongrand S.
Plant Physiol Early Edition: published 2-Mar-2007
Inhibition of ICMT Induces Endothelial Cell Apoptosis through GRP94
Lu Q, Harrington EO, Newton J, Jankowich M, Rounds S.
Am J Respir Cell Mol Biol Early Edition: published 8-Mar-2007
Advances in Urinary Proteome Analysis and Biomarker Discovery
Fliser D, Novak J, Thongboonkerd V, Argiles A, Jankowski V, Girolami MA, Jankowski J, Mischak H.
J Am Soc Nephrol Early Edition: published 28-Feb-2007
Combined 2D electrophoretic approaches for the study of white lupin mature seed storage proteome
Magni C, Scarafoni A, Herndl A, Sessa F, Prinsi B, Espen L, Duranti M.
Phytochemistry Early Edition: published 22-Feb-2007
Strain-resolved community proteomics reveals recombining genomes of acidophilic bacteria
Lo I, Denef VJ, Verberkmoes NC, Shah MB, Goltsman D, Dibartolo G, Tyson GW, Allen EE, Ram RJ, Detter JC, Richardson P, Thelen MP, Hettich RL, Banfield JF.
Nature Early Edition: published 7-Mar-2007
The importance of fibroblasts in remodelling of the human uterine cervix during pregnancy and parturition
Malmstrom E, Sennstrom M, Holmberg A, Frielingsdorf H, Eklund E, Malmstrom L, Tufvesson E, Gomez MF, Westergren-Thorsson G, Ekman-Ordeberg G, Malmstrom A.
Mol Hum Reprod Early Edition: published 2-Mar-2007
15N-Metabolic labeling for comparative plasma membrane proteomics in Arabidopsis cells
Viviane Lanquar, Lauriane Kuhn, Françoise Lelièvre, Mehdi Khafif, Christelle Espagne, Christophe Bruley, Hélène Barbier-Brygoo, Jérôme Garin, Sébastien Thomine
PROTEOMICS (2007) 7(5): 750-754
Proteomic analysis of leaf proteins during dehydration of the resurrection plant Xerophyta viscosa
Ingle RA, Schmidt UG, Farrant JM, Thomson JA, Mundree SG.
Plant Cell Environ (2007) 30(4): 435-46
Identification of novel Escherichia coli ribosome associated proteins using isobaric tags and multidimensional protein identification techniques
Jiang M, Sullivan SM, Walker AK, Strahler JR, Andrews PC, Maddock JR.
J Bacteriol Early Edition: published 2-Mar-2007
Analysis of proteomic profiles and functional properties of human peripheral blood myeloid dendritic cells, monocyte-derived dendritic cells and the dendritic cell like KG-1 cells reveals distinct characteristics
Horlock C, Shakib F, Mahdavi J, Jones NS, Sewell HF, Ghaemmaghami AM.
Genome Biol (2007) 8(3): R30
HSP27 and HSP70 interact with CD10 in C4-2 prostate cancer cells
Dall'era MA, Oudes A, Martin DB, Liu AY.
Prostate Early Edition: published 6-Mar-2007
Proteomic and immunoblot analysis of Bartonella quintana total membrane proteins identifies antigens recognized by serum from infected patients
Boonjakuakul JK, Gerns HL, Chen YT, Hicks LD, Minnick MF, Koehler JE.
Infect Immun Early Edition: published 16-Feb-2007
From proteomics to systems biology of bacterial pathogens: Approaches, tools, and applications
Uwe Plikat, Hans Voshol, Yvonne Dangendorf, Brigitte Wiedmann, Piroska Devay, Dieter Müller, Urs Wirth, Joseph Szustakowski, Gung-Wei Chirn, Bruno Inverardi, Xiaoling Puyang, Kara Brown, Heather Kamp, Sjouke Hoving, Alexandra Ruchti, Nathalie Brendlen, Ron Peterson, Jennifer Buco, Jan van Oostrum, Manuel C. Peitsch
PROTEOMICS (2007) 7(6): 992-1003
Proteomic analysis of dimorphic transition in the phytopathogenic fungus Ustilago maydis
Maik Böhmer, Thomas Colby, Christian Böhmer, Anne Bräutigam, Jürgen Schmidt, Michael Bölker
PROTEOMICS (2007) 7(5): 675-685
Prediction of nitrogen metabolism-related genes in Anabaena by kernel-based network analysis
Shinobu Okamoto, Yoshihiro Yamanishi, Shigeki Ehira, Shuichi Kawashima, Koichiro Tonomura, Minoru Kanehisa
PROTEOMICS (2007) 7(6): 900-909
Effect of tannic acid on Lactobacillus hilgardii analysed by a proteomic approach
Bossi A, Rinalducci S, Zolla L, Antonioli P, Righetti PG, Zapparoli G.
J Appl Microbiol (2007) 102(3): 787-95
The extant core bacterial proteome is an archive of the origin of life
Antoine Danchin, Gang Fang, Stanislas Noria
PROTEOMICS (2007) 7(6): 875-889
Proteomic analysis of a non-virulent mutant of the phytopathogenic bacterium Erwinia chrysanthemi deficient in osmoregulated periplasmic glucans: change in protein expression is not restricted to the envelope, but affects general metabolism
Bouchart F, Delangle A, Lemoine J, Bohin JP, Lacroix JM.
Microbiology (2007) 153(Pt 3): 760-7
Profiling the Secretome of the Marine Bacterium Pseudoalteromonas tunicata Using Amine-Specific Isobaric Tagging (iTRAQ)
Flavia F. Evans, Mark J. Raftery, Suhelen Egan, and Staffan Kjelleberg
JOURNAL OF PROTEOME RESEARCH (2007) 6(3): 967-975
An Alternative Strategy for the Membrane Proteome Analysis of the Green Sulfur Bacterium Chlorobium tepidum Using Blue Native PAGE and 2-D PAGE on Purified Membranes
Michalis Aivaliotis, Michael Karas, and Georgios Tsiotis
JOURNAL OF PROTEOME RESEARCH (2007) 6(3): 1048-1058
A Quantitative Proteomic Analysis of Light Adaptation in a Globally Significant Marine Cyanobacterium Prochlorococcus marinus MED4
Jagroop Pandhal, Phillip C. Wright, and Catherine A. Biggs
JOURNAL OF PROTEOME RESEARCH (2007) 6(3): 996-1005
The plasticity of global proteome and genome expression analyzed in closely related W3110 and MG1655 strains of a well-studied model organism, Escherichia coli-K12
Vijayendran C, Polen T, Wendisch VF, Friehs K, Niehaus K, Flaschel E.
J Biotechnol Early Edition: published 14-Jan-2007
Proteomic study of the Bacillus subtilis ribosome: Finding of zinc-dependent replacement for ribosomal protein L31 paralogues
Nanamiya H, Kawamura F, Kosono S.
J Gen Appl Microbiol (2006) 52(5): 249-58
The proteome and transcriptome analysis of Bacillus subtilis in response to salicylic acid
Nguyen Van Duy, Ulrike Mäder, Ngoc Phuong Tran, Jean-François Cavin, Le Thi Tam, Dirk Albrecht, Michael Hecker, Haike Antelmann
PROTEOMICS (2007) 7(5): 698-710
Quantitative transcriptome, proteome and sulfur metabolite profiling of the Saccharomyces cerevisiae response to arsenite
Thorsen M, Lagniel G, Kristiansson E, Junot C, Nerman O, Labarre J, Tamas MJ.
Physiol Genomics Early Edition: published 27-Feb-2007
Venomic analyses of Scolopendra viridicornis nigra and Scolopendra angulata (Centipede, Scolopendromorpha): Shedding light on venoms from a neglected group
Rates B, Bemquerer MP, Richardson M, Borges MH, Morales RA, De Lima ME, Pimenta AM.
Toxicon Early Edition: published 19-Dec-2006
Proteome analysis after co-administration of clozapine or haloperidol to MK-801-treated rats
Paulson L, Martin P, Ljung E, Blennow K, Davidsson P.
J Neural Transm Early Edition: published 22-Feb-2007
Proteomics approach to illustrate drug action mechanisms
Wang Y, Chiu JF, He QY.
Curr Drug Discov Technol (2006) 3(3): 199-209
A Proteomic Analysis of Bromobenzene Reactive Metabolite Targets in Rat Liver Cytosol in Vivo
Koen YM, Gogichaeva NV, Alterman MA, Hanzlik RP.
Chem Res Toxicol Early Edition: published 17-Feb-2007
Proteomic validation of protease drug targets: pharmacoproteomics of matrix metalloproteinase inhibitor drugs using isotope-coded affinity tag labelling and tandem mass spectrometry
Butler GS, Overall CM.
Curr Pharm Des (2007) 13(3): 263-70
Diagnostic potential for urinary proteomics
Hortin GL, Sviridov D.
Pharmacogenomics (2007) 8(3): 237-55
Identifying Pharmacodynamic Protein Markers of Centrally Active Drugs in Humans: A Pilot Study in a Novel Clinical Model
Sandeep T. Patil, Richard E. Higgs, John E. Brandt, Michael D. Knierman, Valentina Gelfanova, Jon P. Butler, AnnCatherine M. Downing, Jill Dorocke, Robert A. Dean, William Z. Potter, David Michelson, Alan X. Pan, Stanford S. Jhee, and John E. Hale
JOURNAL OF PROTEOME RESEARCH (2007) 6(3): 955-966
Quantitative proteomic analysis of rat liver for carcinogenicity prediction in a 28-day repeated dose study
Hidenori Yamanaka, Yoshikuni Yakabe, Koichi Saito, Masaru Sekijima, Tomoyuki Shirai
PROTEOMICS (2007) 7(5): 781-795
Evaluation and Optimization of ZIC-HILIC-RP as an Alternative MudPIT Strategy
Paul J. Boersema, Nullin Divecha, Albert J. R. Heck, and Shabaz Mohammed
JOURNAL OF PROTEOME RESEARCH (2007) 6(3): 937-946
Isolation of Phosphopeptides by pI-Difference-Based Electrophoresis
Yingda Xu, Robert Sprung, Sung Won Kwon, Sung Chan Kim, and Yingming Zhao
JOURNAL OF PROTEOME RESEARCH (2007) 6(3): 1153-1157
Activity based probes for proteases: applications to biomarker discovery, molecular imaging and drug screening
Fonovic M, Bogyo M.
Curr Pharm Des (2007) 13(3): 253-61
Protein arrays: applications and implications in neuroscience
Leis-Esnaola O, Lafuente-Sanchez JV.
Rev Neurol (2007) 44(5): 285-290. Spanish
Side-Chain Losses in Electron Capture Dissociation To Improve Peptide Identification
Mikhail M. Savitski, Michael L. Nielsen, and Roman A. Zubarev
ANALYTICAL CHEMISTRY (2007) 79(6): 2296-2302
Large-Scale Phosphorylation Analysis of -Factor-Arrested Saccharomyces cerevisiae
Xue Li, Scott A. Gerber, Adam D. Rudner, Sean A. Beausoleil, Wilhelm Haas, Judit Villén, Joshua E. Elias, and Steve P. Gygi
JOURNAL OF PROTEOME RESEARCH (2007) 6(3): 1190-1197
Identification of N-linked glycosylation sites in human nephrin using mass spectrometry
Jamshid Khoshnoodi, Salisha Hill, Karl Tryggvason, Billy Hudson, David B. Friedman
Journal of Mass Spectrometry (2007) 42(3): 370-379
Quantification of oxidative posttranslational modifications of cysteine thiols of p21ras associated with redox modulation of activity using isotope-coded affinity tags and mass spectrometry
Sethuraman M, Clavreul N, Huang H, McComb ME, Costello CE, Cohen RA.
Free Radic Biol Med (2007) 42(6): 823-9
Inhibition of ICMT Induces Endothelial Cell Apoptosis through GRP94
Lu Q, Harrington EO, Newton J, Jankowich M, Rounds S.
Am J Respir Cell Mol Biol Early Edition: published 8-Mar-2007
Enhancement of the Efficiency of Phosphoproteomic Identification by Removing Phosphates after Phosphopeptide Enrichment
Yasushi Ishihama, Fan-Yan Wei, Ken Aoshima, Toshitaka Sato, Junro Kuromitsu, and Yoshiya Oda
JOURNAL OF PROTEOME RESEARCH (2007) 6(3): 1139-1144
Identifying functional modules in the physical interactome of Saccharomyces cerevisiae
Shuye Pu, Jim Vlasblom, Andrew Emili, Jack Greenblatt, Shoshana J. Wodak
PROTEOMICS (2007) 7(6): 944-960
A Novel Approach for Generating Full-length, High Coverage Allele Libraries for the Analysis of Protein Interactions
Phillip N. Gray, Katherine J. Busser, and Thomas G. Chappell
Mol Cell Proteomics (2007) 6(3): 514-526
Combinatorial Library Screening for Developing an Improved Split-Firefly Luciferase Fragment-Assisted Complementation System for Studying Protein-Protein Interactions
Ramasamy Paulmurugan and Sanjiv S. Gambhir
ANALYTICAL CHEMISTRY (2007) 79(6): 2346-2353
WI-PHI: A weighted yeast interactome enriched for direct physical interactions
Lars Kiemer, Stefano Costa, Marius Ueffing, Gianni Cesareni
PROTEOMICS (2007) 7(6): 932-943
Toward a Comprehensive Atlas of the Physical Interactome of Saccharomyces cerevisiae
Sean R. Collins, Patrick Kemmeren, Xue-Chu Zhao, Jack F. Greenblatt, Forrest Spencer, Frank C. P. Holstege, Jonathan S. Weissman, and Nevan J. Krogan
Mol Cell Proteomics (2007) 6(3): 439-450
Sulfation, the Up-and-Coming Post-Translational Modification: Its Role and Mechanism in Protein-Protein Interaction
Amina S. Woods, Hay-Yan J. Wang, and Shelley N. Jackson
JOURNAL OF PROTEOME RESEARCH (2007) 6(3): 1176-1182
Identification of novel Escherichia coli ribosome associated proteins using isobaric tags and multidimensional protein identification techniques
Jiang M, Sullivan SM, Walker AK, Strahler JR, Andrews PC, Maddock JR.
J Bacteriol Early Edition: published 2-Mar-2007
Is the intrinsic disorder of proteins the cause of the scale-free architecture of protein-protein interaction networks?
Santiago Schnell, Santo Fortunato, Sourav Roy
PROTEOMICS (2007) 7(6): 961-964
Quantification of oxidative posttranslational modifications of cysteine thiols of p21ras associated with redox modulation of activity using isotope-coded affinity tags and mass spectrometry
Sethuraman M, Clavreul N, Huang H, McComb ME, Costello CE, Cohen RA.
Free Radic Biol Med (2007) 42(6): 823-9
Quantitative proteomic analysis of rat liver for carcinogenicity prediction in a 28-day repeated dose study
Hidenori Yamanaka, Yoshikuni Yakabe, Koichi Saito, Masaru Sekijima, Tomoyuki Shirai
PROTEOMICS (2007) 7(5): 781-795
Development of Reagents for Differential Protein Quantitation by Subtractive Parent (Precursor) Ion Scanning
Åsa Wåhlander, Giorgio Arrigoni, Kristofer Wårell, Fredrik Levander, Ronnie Palmgren, Jean-Luc Maloisel, Philippe Busson, and Peter James
JOURNAL OF PROTEOME RESEARCH (2007) 6(3): 1101-1113
Proteomic profiling of pathological and aged skeletal muscle fibres by peptide mass fingerprinting (Review)
Doran P, Donoghue P, O'connell K, Gannon J, Ohlendieck K.
Int J Mol Med (2007) 19(4): 547-64
The rational design of biological complexity: A deceptive metaphor
Marc H. V. Van Regenmortel
PROTEOMICS (2007) 7(6): 965-975
Proteomics approach to illustrate drug action mechanisms
Wang Y, Chiu JF, He QY.
Curr Drug Discov Technol (2006) 3(3): 199-209
Multiple biomarkers in molecular oncology. I. Molecular diagnostics applications in cervical cancer detection
Malinowski DP.
Expert Rev Mol Diagn (2007) 7(2): 117-31
The active platelet: translation and protein synthesis in an anucleate cell
Lindemann S, Gawaz M.
Semin Thromb Hemost (2007) 33(2): 144-50
Activity based probes for proteases: applications to biomarker discovery, molecular imaging and drug screening
Fonovic M, Bogyo M.
Curr Pharm Des (2007) 13(3): 253-61
Genomics and proteomics approaches in understanding tumor angiogenesis
Mittal V, Nolan DJ.
Expert Rev Mol Diagn (2007) 7(2): 133-47
Romancing the "hidden proteome", Anno Domini two zero zero seven
Boschetti E, Lomas L, Citterio A, Righetti PG.
J Chromatogr A Early Edition: published 8-Feb-2007
Proteomics: a review and an example using the reticulocyte membrane proteome
Prenni JE, Avery AC, Olver CS.
Vet Clin Pathol (2007) 36(1): 13-24
Molecular cloning and expression of a cDNA encoding a Coccidioides posadasii Cu,Zn superoxide dismutase protein identified by proteomic analysis of the coccidioidal T27K vaccine
Lunetta JM, Simmons KA, Johnson SM, Pappagianis D.
Ann N Y Acad Sci Early Edition: published 7-Mar-2007
Integrating transcriptome, proteome and glycome analyses of Schistosoma biology
Hokke CH, Fitzpatrick JM, Hoffmann KF.
Trends Parasitol Early Edition: published 28-Feb-2007
Principles of proteomics and its applications in cancer
Chuthapisith S, Layfield R, Kerr ID, Eremin O.
Surgeon (2007) 5(1): 14-22
Understanding the influence of post-excite radius and axial confinement on quantitative proteomic measurements using Fourier transform ion cyclotron resonance mass spectrometry
Jennifer L. Frahm, Coral M. Capo Velez, David C. Muddiman
Rapid Communications in Mass Spectrometry (2007) 21(7): 1196-1204
Stable isotope-free quantitative shotgun proteomics combined with sample pattern recognition for rapid diagnostics
Wienkoop S, Larrainzar E, Niemann M, Gonzalez EM, Lehmann U, Weckwerth W.
J Sep Sci (2006) 29(18): 2793-801
Molecular Profiling of Native and Matrix-Coated Tissue Slices from Rat Brain by Infrared and Ultraviolet Laser Desorption/Ionization Orthogonal Time-of-Flight Mass Spectrometry
Klaus Dreisewerd, Remi Lemaire, Gottfried Pohlentz, Michel Salzet, Maxence Wisztorski, Stefan Berkenkamp, and Isabelle Fournier
ANALYTICAL CHEMISTRY (2007) 79(6): 2463-2471
Free Radical-Induced Site-Specific Peptide Cleavage in the Gas Phase: Low-Energy Collision-Induced Dissociation in ESI- and MALDI Mass Spectrometry
Yin H, Chacon A, Porter NA, Yin H, Masterson DS.
J Am Soc Mass Spectrom Early Edition: published 15-Feb-2007
Sample preparation for two-dimensional gel electrophoresis using pressure cycling technology
Smejkal GB, Witzmann FA, Ringham H, Small D, Chase SF, Behnke J, Ting E.
Anal Biochem Early Edition: published 27-Jan-2007
Tandem Affinity Monolithic Microcolumns with Immobilized Protein A, Protein G', and Antibodies for Depletion of High Abundance Proteins from Serum Samples: Integrated Microcolumn-Based Fluidic System for Simultaneous Depletion and Tryptic Digestion
Yazen Jmeian and Ziad El Rassi
JOURNAL OF PROTEOME RESEARCH (2007) 6(3): 947-954
Development of Efficient Protein Extraction Methods for Shotgun Proteome Analysis of Formalin-Fixed Tissues
Xiaogang Jiang, Xinning Jiang, Shun Feng, Ruijun Tian, Mingliang Ye, and Hanfa Zou
JOURNAL OF PROTEOME RESEARCH (2007) 6(3): 1038-1047
CE-Microreactor-CE-MS/MS for Protein Analysis
Regine M. Schoenherr, Mingliang Ye, Michael Vannatta, and Norman J. Dovichi
ANALYTICAL CHEMISTRY (2007) 79(6): 2230-2238
On the Proper Use of Mass Accuracy in Proteomics
Roman Zubarev and Matthias Mann
Mol Cell Proteomics (2007) 6(3): 377-381
Standardisation of rapid in-gel digestion by mass spectrometry
Bernhard Granvogl, Patrick Gruber, Lutz Andreas Eichacker
PROTEOMICS (2007) 7(5): 642-654
Effect of CyDye minimum labeling in differential gel electrophoresis on the reliability of protein identification
Thomas Hrebicek, Karin Dürrschmid, Norbert Auer, Karl Bayer, Andreas Rizzi
ELECTROPHORESIS (2007) 28(7): 1161-1169
Start-to-end processing of two-dimensional gel electrophoretic images
Daszykowski M, Stanimirova I, Bodzon-Kulakowska A, Silberring J, Lubec G, Walczak B.
J Chromatogr A Early Edition: published 12-Feb-2007
Analysis of tryptic peptides using desorption electrospray ionisation combined with ion mobility spectrometry/mass spectrometry
Gushinder Kaur-Atwal, Daniel J. Weston, Philip S. Green, Susan Crosland, Philip L. R. Bonner, Colin S. Creaser
Rapid Communications in Mass Spectrometry (2007) 21(7): 1131-1138
Mass Spectrometric Identification of Degradation Products of Insulin and Its Long-Acting Analogues in Human Urine for Doping Control Purposes
Andreas Thomas, Mario Thevis, Philippe Delahaut, Alain Bosseloir, and Wilhelm Schänzer
ANALYTICAL CHEMISTRY (2007) 79(6): 2518-2524
Trypsin-Linked Copolymer MALDI Chips for Fast Protein Identification
Alfredo J. Ib ñez, Alexander Muck, Vincentius Halim, and Ale Svato
JOURNAL OF PROTEOME RESEARCH (2007) 6(3): 1183-1189
A Simple and Efficient Photoaffinity Method for Proteomics of GTP-Binding Proteins
Kaneda M, Masuda S, Tomohiro T, Hatanaka Y.
Chembiochem Early Edition: published 2-Mar-2007
Multiplexed Ion Mobility Spectrometry-Orthogonal Time-of-Flight Mass Spectrometry
Mikhail E. Belov, Michael A. Buschbach, David C. Prior, Keqi Tang, and Richard D. Smith
ANALYTICAL CHEMISTRY (2007) 79(6): 2451-2462
Use of the arginine-specific butanedione/phenylboronic acid tag for analysis of peptides and protein digests using matrix-assisted laser desorption/ionization mass spectrometry
Alexander Leitner, Sabine Amon, Andreas Rizzi, Wolfgang Lindner
Rapid Communications in Mass Spectrometry (2007) 21(7): 1321-1330
Multiplex target protein imaging in tissue sections by mass spectrometry - TAMSIM
Gwendoline Thiery, Mikhail S. Shchepinov, Edwin M. Southern, Anne Audebourg, Virginie Audard, Benoît Terris, Ivo G. Gut
Rapid Communications in Mass Spectrometry (2007) 21(6): 823-829
Analysis of nuclear proteome in C57 mouse liver tissue by a nano-flow 2-D-LC-ESI-MS/MS approach
Zhang J, Xu X, Shen H, Zhang X.
J Sep Sci (2006) 29(17): 2635-46
On-line preparation of microsamples prior to CE
Feliciano Priego Capote, María Dolores Luque de Castro
ELECTROPHORESIS (2007) 28(8): 1214-1220
Large-Scale Identification of c-MYC-Associated Proteins using a Combined TAP/MudPIT Approach
Koch HB, Zhang R, Verdoodt B, Bailey A, Zhang CD, Yates JR 3rd, Menssen A, Hermeking H.
Cell Cycle Early Edition: published 20-Jan-2007
NopM and NopD Are Rhizobial Nodulation Outer Proteins: Identification Using LC-MALDI and LC-ESI with a Monolithic Capillary Column
João A. Rodrigues, Francisco Javier López-Baena, Francisco Javier Ollero, José María Vinardell, María del Rosario Espuny, Ramon A. Bellogín, José Enrique Ruiz-Sainz, Jerry R. Thomas, Dave Sumpton, James Ault, and Jane Thomas-Oates
JOURNAL OF PROTEOME RESEARCH (2007) 6(3): 1029-1037
Ultrahigh-pressure dual online solid phase extraction/capillary reverse-phase liquid chromatography/tandem mass spectrometry (DO-SPE/cRPLC/MS/MS): A versatile separation platform for high-throughput and highly sensitive proteomic analyses
Hye-Ki Min, Seok-Won Hyung, Joong-Won Shin, Hui-Sun Nam, Sung-Hyun Ahn, Hee Jung Jung, Sang-Won Lee
ELECTROPHORESIS (2007) 28(6): 1012-1021
A three-symbol code for organized proteomes based on cyclical imaging of protein locations
Schubert W.
Cytometry A Early Edition: published 26-Feb-2007
An improved method for the analysis of membrane proteins by mass spectrometry
Mirza SP, Halligan BD, Greene AS, Olivier M.
Physiol Genomics Early Edition: published 6-Mar-2007
Tryptic digestion of ubiquitin standards reveals an improved strategy for identifying ubiquitinated proteins by mass spectrometry
Nicholas J. Denis, Julian Vasilescu, Jean-Philippe Lambert, Jeffrey C. Smith, Daniel Figeys
PROTEOMICS (2007) 7(6): 868-874
Assignment of protein function and discovery of novel nucleolar proteins based on automatic analysis of MEDLINE
Martijn Schuemie, Christine Chichester, Frederique Lisacek, Yohann Coute, Peter-Jan Roes, Jean Charles Sanchez, Jan Kors, Barend Mons
PROTEOMICS (2007) 7(6): 921-931
CIEF with hydrodynamic and chemical mobilization for the separation of forms of ?-1-acid glycoprotein
Izaskun Lacunza, Jose C. Diez-Masa, Mercedes de Frutos
ELECTROPHORESIS (2007) 28(8): 1204-1213
Enhanced Analysis of the Mouse Plasma Proteome Using Cysteine-Containing Tryptic Glycopeptides
Oliver K. Bernhard, Eugene A. Kapp, and Richard J. Simpson
JOURNAL OF PROTEOME RESEARCH (2007) 6(3): 987-995
A modified peptide mapping strategy for quantifying site-specific deamidation by electrospray time-of-flight mass spectrometry
Steven D. Stroop
Rapid Communications in Mass Spectrometry (2007) 21(6): 830-836
Application of pressure cycling technology to tissue sample preparation for 2-DE
Heather Ringham, Richard L. Bell, Gary B. Smejkal, James Behnke, Frank A. Witzmann
ELECTROPHORESIS (2007) 28(6): 1022-1024
Acceleration of Microwave-Assisted Enzymatic Digestion Reactions by Magnetite Beads
Wei-Yu Chen and Yu-Chie Chen
ANALYTICAL CHEMISTRY (2007) 79(6): 2394-2401
Proteomic analysis of macrophages: A new way to identify novel cell-surface antigens
Zhang L, Lun Y, Yan D, Yu L, Ma W, Du B, Zhu X.
J Immunol Methods Early Edition: published 30-Jan-2007
Proteomics Analysis of Protein Kinases by Target Class-selective Prefractionation and Tandem Mass Spectrometry
Josef Wissing, Lothar Jansch, Manfred Nimtz, Guido Dieterich, Renate Hornberger, Gyorgy Keri, Jurgen Wehland, and Henrik Daub
Mol Cell Proteomics (2007) 6(3): 537-547
Comprehensive analysis of proteins of pH fractionated samples using monolithic LC/MS/MS, intact MW measurement and MALDI-QIT-TOF MS
Chul Yoo, Tasneem H. Patwa, Paweena Kreunin, Fred R. Miller, Christian G. Huber, Alexey I. Nesvizhskii, David M. Lubman
Journal of Mass Spectrometry (2007) 42(3): 312-334
High-Throughput Screening of Single-Chain Antibodies Using Multiplexed Flow Cytometry
Joanne Ayriss, Travis Woods, Andrew Bradbury, and Peter Pavlik
JOURNAL OF PROTEOME RESEARCH (2007) 6(3): 1072-1082
Integrated Label-Free Protein Detection and Separation in Real Time Using Confined Surface Plasmon Resonance Imaging
Nguyen Ly, Kyle Foley, and Nongjian Tao
ANALYTICAL CHEMISTRY (2007) 79(6): 2546-2551
Enrichment of the Basic/Cationic Urinary Proteome Using Ion Exchange Chromatography and Batch Adsorption
Visith Thongboonkerd, Theptida Semangoen, and Somchai Chutipongtanate
JOURNAL OF PROTEOME RESEARCH (2007) 6(3): 1209-1214
Book Reviews: Proteomics of Microbial Pathogens. By Peter Jungblut and Michael Hecker (Eds.)
Phil Cash
PROTEOMICS - Clinical Applications (2007) 1(4): 435-436
Book Reviews: Cardiovascular Proteomics: Methods and Protocols. By Fernando Vivanco (Ed.)
Jules A. Westbrook
PROTEOMICS - Clinical Applications (2007) 1(4): 435
Book Reviews: Liquid Chromatography - Mass Spectrometry 3rd Edition. By Wilfried M. A. Niessen
Giuliano Elia
PROTEOMICS - Clinical Applications (2007) 1(4): 436-437
Meetings Diary: Electrophoresis 8/2007
ELECTROPHORESIS (2007) 28(8): 1301
Highlights of the first BSPR London Regional Meeting and Fifth Imperial Proteomics Day
Judit M. Nagy
PROTEOMICS - Clinical Applications (2007) 1(4): 348-351
Meetings
JOURNAL OF PROTEOME RESEARCH (2007) 6(3): 935
Call for Papers: Electrophoresis 8/2007
ELECTROPHORESIS (2007) 28(8): 1300-1301
New Products
JOURNAL OF PROTEOME RESEARCH (2007) 6(3): 936
Proteomics: You Say Functional, I Say Structural
Raymond C. StevensJohn R. Yates
JOURNAL OF PROTEOME RESEARCH (2007) 6(3): 927
Assessment of Hierarchical Clustering Methodologies for Proteomic Data Mining J. Proteome Res. 2007, 6 (1), 358-366
Bruno Meunier, Emilie Dumas, Isabelle Piec, Daniel Béchet, Michel Hébraud, and Jean-François Hocquette
JOURNAL OF PROTEOME RESEARCH (2007) 6(3): 1215-1215
TOOLbox: Salvaging true positives from "one-hit wonders" | De novo peptide identification with PILOT | ProCAT for protein microarrays | PRISM for spectral comparisons
JOURNAL OF PROTEOME RESEARCH (2007) 6(3): 930-931
Currents: Proteotypic peptides in the spotlight | Proteomics of the secretory pathway | Preparing urine samples for metabonomics studies | iTRAQ labeling of intact proteins
JOURNAL OF PROTEOME RESEARCH (2007) 6(3): 929-931
Systems Biology
Frédérique Lisacek, Ron D. Appel
PROTEOMICS (2007) 7(6): 825-827
Towards quantitative analysis of proteome dynamics
Kuhner S, Gavin AC.
Nat Biotechnol (2007) 25(3): 298-300