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SPS' DigestIssue 42, 21-Jun-2007 |
A services oriented system for bioinformatics applications on the grid
Aloisio G, Cafaro M, Epicoco I, Fiore S, Mirto M.
Stud Health Technol Inform (2007) 126: 174-83
Simultaneous and exact interval estimates for the contrast of two groups based on an extremely high dimensional variable: Application to Mass Spec data
Park Y, Downing SR, Kim D, Hahn WC, Li C, Kantoff PW, Wei LJ.
Bioinformatics Early Edition: published 25-Apr-2007
PrestOMIC, an open source application for dissemination of proteomic datasets by individual laboratories
Howes C, Foster L
Proteome Science (2007) 5: 8
LinkHub: a Semantic Web system that facilitates cross-database queries and information retrieval in proteomics
Smith AK, Cheung KH, Yip KY, Schultz M, Gerstein MK.
BMC Bioinformatics (2007) 8(Suppl 3): S5
Learning and modeling biosignatures from tissue images
Gilfeather F, Hamine V, Helman P, Hutt J, Loring T, Rick Lyons C, Veroff R.
Comput Biol Med Early Edition: published 10-Apr-2007
chip artifact CORRECTion (caCORRECT): A Bioinformatics System for Quality Assurance of Genomics and Proteomics Array Data
Stokes TH, Moffitt RA, Phan JH, Wang MD.
Ann Biomed Eng (2007) 35(6): 1068-80
Grid-based Analysis of Tandem Mass Spectrometry Data in Clinical Proteomics
Quandt A, Hernandez P, Kunzst P, Pautasso C, Tuloup M, Hernandez C, Appel RD.
Stud Health Technol Inform (2007) 126: 13-22
A mixture model approach to the tests of concordance and discordance
Yinglei Lai, Bao-ling Adam, Robert Podolsky, and Jin-Xiong She
Bioinformatics (2007) 23(10): 1243-1250
Data analysis of assorted serum peptidome profiles
Villanueva J, Philip J, Denoyer L, Tempst P.
Nat Protoc (2007) 2(3): 588-602
Probability Model for Assessing Proteins Assembled from Peptide Sequences Inferred from Tandem Mass Spectrometry Data
Feng J, Naiman DQ, Cooper B.
Anal Chem Early Edition: published 19-Apr-2007
Computational proteomics analysis of HIV-1 protease interactome
Kontijevskis A, Wikberg JE, Komorowski J.
Proteins Early Edition: published 10-Apr-2007
Verification of automated peptide identifications from proteomic tandem mass spectra
Tabb DL, Friedman DB, Ham AJ.
Nat Protoc (2006) 1(5): 2213-22
ngLOC: an n-gram-based Bayesian method for estimating the subcellular proteomes of eukaryotes
King BR, Guda C.
Genome Biol (2007) 8(5): R68
De novo peptide sequencing using ion peak intensity and amino acid cleavage intensity ratio
Mitsuhiro Kanazawa, Hisae Anyoji, Atsushi Ogiwara, and Umpei Nagashima
Bioinformatics (2007) 23(9): 1068-1072
Novel peptide identification from tandem mass spectra using ESTs and sequence database compression
Edwards NJ.
Mol Syst Biol (2007) 3: 102
PQuad - a visual analysis platform for proteomic data exploration of microbial organisms
Webb-Robertson BJ, Peterson ES, Singhal M, Klicker KR, Oehmen CS, Adkins JN, Havre SL.
Bioinformatics Early Edition: published 5-May-2007
Function prediction of uncharacterized proteins
Hawkins T, Kihara D.
J Bioinform Comput Biol (2007) 5(1): 1-30
Alignment of two-dimensional electrophoresis gels
Shi G, Jiang T, Zhu W, Liu B, Zhao H.
Biochem Biophys Res Commun (2007) 357(2): 427-32
Metabolic pathway analysis of s. Pneumoniae: an in silico approach towards drug-design
Singh S, Malik BK, Sharma DK.
J Bioinform Comput Biol (2007) 5(1): 135-53
A DIGE analysis of developing poplar leaves subjected to ozone reveals major changes in carbon metabolism
Sacha Bohler, Matthieu Bagard, Mouhssin Oufir, Sebastien Planchon, Lucien Hoffmann, Yves Jolivet, Jean-Francois Hausman, Pierre Dizengremel, Jenny Renaut
PROTEOMICS (2007) 7(10): 1584-1599
Differential proteomic analysis of the endoplasmic reticulum from developing and germinating seeds of castor (Ricinus communis) identifies seed protein precursors as significant components of the endoplasmic reticulum
Daniel J. Maltman, Stephen M. Gadd, William J. Simon, Antoni R. Slabas
PROTEOMICS (2007) 7(9): 1513-1528
Molecular Composition of IMP1 Ribonucleoprotein Granules
Lars Jonson, Jonas Vikesaa, Anders Krogh, Lars K. Nielsen, Thomas vO. Hansen, Rehannah Borup, Anders H. Johnsen, Jan Christiansen, and Finn C. Nielsen
Mol Cell Proteomics (2007) 6(5): 798-811
Proteomic analysis reveals differences between Vitis vinifera L. cv. Chardonnay and cv. Cabernet Sauvignon and their responses to water deficit and salinity
Vincent D, Ergul A, Bohlman MC, Tattersall EA, Tillett RL, Wheatley MD, Woolsey R, Quilici DR, Joets J, Schlauch K, Schooley DA, Cushman JC, Cramer GR.
J Exp Bot (2007) 58(7): 1873-92
Proteome-wide analysis of the serological response to vaccinia and smallpox
D. Huw Davies, Douglas M. Molina, Jens Wrammert, Joe Miller, Siddiqua Hirst, Yunxiang Mu, Jozelyn Pablo, Berkay Unal, Rie Nakajima-Sasaki, Xiaowu Liang, Shane Crotty, Kevin L. Karem, Inger K. Damon, Rafi Ahmed, Luis Villarreal, Philip L. Felgner
PROTEOMICS (2007) 7(10): 1678-1686
Contributions to our understanding of T cell physiology through unveiling the T cell proteome
Grant MM, Scheel-Toellner D, Griffiths HR.
Clin Exp Immunol (2007) 149(1): 9-15
Differential analysis of protein expression of Bifidobacterium grown on different carbohydrates
He T, Roelofsen H, Alvarez-Llamas G, de Vries M, Venema K, Welling GW, Vonk RJ.
J Microbiol Methods (2007) 69(2): 364-70
Organelle Proteomics: Identification of the Exocytic Machinery Associated with the Natural Killer Cell Secretory Lysosome
Tammy M. Casey, Josephine L. Meade, and Eric W. Hewitt
Mol Cell Proteomics (2007) 6(5): 767-780
Down-regulation of pigment epithelium-derived factor in uveitic lesion associates with focal vascular endothelial growth factor expression and breakdown of the blood-retinal barrier
Cornelia A. Deeg, Frank Altmann, Stefanie M. Hauck, Stephanie Schoeffmann, Barbara Amann, Manfred Stangassinger, Marius Ueffing
PROTEOMICS (2007) 7(9): 1540-1548
Proteomic analysis of photosystem I components from different plant species
Lello Zolla, Sara Rinalducci, Anna Maria Timperio
PROTEOMICS (2007) 7(11): 1866-1876
The proteomic alterations of Thermoanaerobacter tengcongensis cultured at different temperatures
Jingqiang Wang, Caifeng Zhao, Bo Meng, Junhua Xie, Chuanqi Zhou, Xishu Chen, Kang Zhao, Jianmin Shao, Yanfen Xue, Ningzhi Xu, Yanhe Ma, Siqi Liu
PROTEOMICS (2007) 7(9): 1409-1419
Comparative proteomic analysis of blue light signaling components in the Arabidopsis cryptochrome 1 mutant
Phee BK, Park S, Cho JH, Jeon JS, Bhoo SH, Hahn TR.
Mol Cells (2007) 23(2): 154-60
Systematic identification of SH3 domain-mediated human protein-protein interactions by peptide array target screening
Chenggang Wu, Mike Haiting Ma, Kevin R. Brown, Matt Geisler, Lei Li, Eve Tzeng, Christina Y. H. Jia, Igor Jurisica, Shawn S.-C. Li
PROTEOMICS (2007) 7(11): 1775-1785
An approach to identify cold-induced low-abundant proteins in rice leaf
Lee DG, Ahsan N, Lee SH, Kang KY, Lee JJ, Lee BH.
C R Biol (2007) 330(3): 215-25
Multiple proteins present in purified porcine sperm apical plasma membranes interact with the zona pellucida of the oocyte
van Gestel RA, Brewis IA, Ashton PR, Brouwers JF, Gadella BM.
Mol Hum Reprod (2007) 13(7): 445-54
Proteasome-independent HLA-B27 Ligands Arise Mainly from Small Basic Proteins
Miguel Marcilla, Juan J. Cragnolini, and Jose A. Lopez de Castro
Mol Cell Proteomics (2007) 6(5): 923-938
Dehydration-induced proteome changes in the rat hypothalamo-neurohypophyseal system
Gouraud SS, Heesom K, Yao ST, Qiu J, Paton JF, Murphy D.
Endocrinology (2007) 148(7): 3041-52
Proteome Alterations in Rat Mitochondria Caused by Aging
Dencher NA, Frenzel M, Reifschneider NH, Sugawa M, Krause F.
Ann N Y Acad Sci (2007) 1100: 291-298.
2-DE analysis of a new human cell line EM-G3 derived from breast cancer progenitor cells and comparison with normal mammary epithelial cells
Irena Selicharova, Katerina Smutna, Miloslav Sanda, Karel Ubik, Eva Matouskova, Eva Bursikova, Marketa Brozova, Jan Vydra, Jiri Jiracek
PROTEOMICS (2007) 7(9): 1549-1559
Proteomic profiling of aphid Macrosiphum euphorbiae responses to host-plant-mediated stress induced by defoliation and water deficit
An Nguyen TT, Michaud D, Cloutier C.
J Insect Physiol (2007) 53(6): 601-11
Proteomic analysis of age dependent nitration of rat cardiac proteins by solution isoelectric focusing coupled to nanoHPLC tandem mass spectrometry
Hong SJ, Gokulrangan G, Schoneich C.
Exp Gerontol (2007) 42(7): 639-51
Differential expression of both extracellular and intracellular proteins is involved in the lethal or nonlethal phenotypic variation of BrtlIV, a murine model for osteogenesis imperfecta
Antonella Forlino, Chiara Tani, Antonio Rossi, Anna Lupi, Elena Campari, Benedetta Gualeni, Laura Bianchi, Alessandro Armini, Giuseppe Cetta, Luca Bini, Joan C. Marini
PROTEOMICS (2007) 7(11): 1877-1891
Protein expression profiles in Saccharomyces cerevisiae during apoptosis induced by H2O2
Francesca Magherini, Chiara Tani, Tania Gamberi, Anna Caselli, Laura Bianchi, Luca Bini, Alessandra Modesti
PROTEOMICS (2007) 7(9): 1434-1445
Functional genomics and proteomics of the cellular osmotic stress response in ;non-model' organisms
Kultz D, Fiol D, Valkova N, Gomez-Jimenez S, Chan SY, Lee J.
J Exp Biol (2007) 210(Pt 9): 1593-601
Spatio-temporal profiling and degradation of alpha-amylase isozymes during barley seed germination
Bak-Jensen KS, Laugesen S, Ostergaard O, Finnie C, Roepstorff P, Svensson B.
FEBS J (2007) 274(10): 2552-65
2-DE proteomic analysis of the model cyanobacterium Anabaena variabilis
Martin E. Barrios-Llerena, Kenneth F. Reardon, Phillip C. Wright
ELECTROPHORESIS (2007) 28(10): 1624-1632
Comprehensive analysis of exported proteins from Mycobacterium tuberculosis H37Rv
Hiwa Malen, Frode S. Berven, Kari E. Fladmark, Harald G. Wiker
PROTEOMICS (2007) 7(10): 1702-1718
Global analysis of dynamic changes in lipid raft proteins during T-cell activation
Kobayashi M, Katagiri T, Kosako H, Iida N, Hattori S.
Electrophoresis (2007) 28(12): 2035-2043
Proteomic investigation of glucose metabolism in the butyrate-producing gut anaerobe Fusobacterium varium
Joanna Potrykus, Brandi Mahaney, Robert L. White, Stephen L. Bearne
PROTEOMICS (2007) 7(11): 1839-1853
Overlap of Proteome Changes in Medicago truncatula in Response to Auxin and Sinorhizobium meliloti
van Noorden GE, Kerim T, Goffard N, Wiblin R, Pellerone FI, Rolfe BG, Mathesius U.
Plant Physiol (2007) 144(2): 1115-31
Anti-infection Peptidomics of Amphibian Skin
Jianxu Li, Xueqing Xu, Chunhua Xu, Weiping Zhou, Keyun Zhang, Haining Yu, Yaping Zhang, Yongtang Zheng, Huw H. Rees, Ren Lai, Dongming Yang, and Jing Wu
Mol Cell Proteomics (2007) 6(5): 882-894
Integrated proteomic and transcriptomic profiling of mouse lung development and Nmyc target genes
Cox B, Kislinger T, Wigle DA, Kannan A, Brown K, Okubo T, Hogan B, Jurisica I, Frey B, Rossant J, Emili A.
Mol Syst Biol (2007) 3: 109
Identification of Endosomal Epidermal Growth Factor Receptor Signaling Targets by Functional Organelle Proteomics
Taras Stasyk, Natalia Schiefermeier, Sergej Skvortsov, Heinz Zwierzina, Johan Peranen, Guenther K. Bonn, and Lukas A. Huber
Mol Cell Proteomics (2007) 6(5): 908-922
Proteome analysis of antibody-producing CHO cell lines with different metabolic profiles
Pascoe DE, Arnott D, Papoutsakis ET, Miller WM, Andersen DC.
Biotechnol Bioeng Early Edition: published 26-Apr-2007
Proteome analysis of grape skins during ripening
Deytieux C, Geny L, Lapaillerie D, Claverol S, Bonneu M, Doneche B.
J Exp Bot (2007) 58(7): 1851-1862
Identification of gene products present in Triton X-100 soluble and insoluble fractions of human spermatozoa lysates using LC-MS/MS analysis
Mark A. Baker, Gabi Reeves, Louise Hetherington, Jorg Muller, Inke Baur, R. John Aitken
PROTEOMICS - Clinical Applications (2007) 1(5): 524-532
A proteomic approach to the investigation of early events involved in the activation of vascular smooth muscle cells
Boccardi C, Cecchettini A, Caselli A, Camici G, Evangelista M, Mercatanti A, Rainaldi G, Citti L.
Cell Tissue Res (2007) 329(1): 119-28
Proteomics Analysis of Ring1B/Rnf2 Interactors Identifies a Novel Complex with the Fbxl10/Jhdm1B Histone Demethylase and the Bcl6 Interacting Corepressor
Carmen Sanchez, Ines Sanchez, Jeroen A. A. Demmers, Patrick Rodriguez,John Strouboulis, and Miguel Vidal
Mol Cell Proteomics (2007) 6(5): 820-834
A proteomic-based approach for the characterization of some major structural proteins involved in host-parasite relationships from the silkworm parasite Nosema bombycis (Microsporidia)
Jian-Yang Wang, Christophe Chambon, Chang-De Lu, Ke-Wei Huang, Christian P. Vivares, Catherine Texier
PROTEOMICS (2007) 7(9): 1461-1472
Increased Abundance of Proteins Involved in Phytosiderophore Production in Boron Tolerant Barley
Patterson J, Ford K, Cassin A, Natera S, Bacic A.
Plant Physiol Early Edition: published 3-May-2007
Proteomics identifies enhanced expression of stefin A in neonatal murine skin compared with adults: functional implications
Scott DK, Lord R, Muller HK, Malley RC, Woods GM.
Br J Dermatol (2007) 156(6): 1156-62
Protein expression profiles of Bos taurus blood and lymphatic vessel endothelial cells
Laura Bianchi, Paola Lorenzoni, Luca Bini, Elisabetta Weber, Chiara Tani, Antonella Rossi, Margherita Agliano, Vitaliano Pallini, Giovanni Sacchi
PROTEOMICS (2007) 7(10): 1600-1614
Proteomic analysis of rice plasma membrane reveals proteins involved in early defense response to bacterial blight
Fang Chen, Yuexing Yuan, Qun Li, Zuhua He
PROTEOMICS (2007) 7(9): 1529-1539
Maturation of the mammalian secretome
Simpson JC, Mateos A, Pepperkok R.
Genome Biol (2007) 8(4): 211
A proteomic analysis of ATM/ATR substrates identifies the ubiquitin-proteosome system as a regulator for DNA damage checkpoints
Mu JJ, Wang Y, Luo H, Leng M, Zhang J, Yang T, Bessuso D, Jung SY, Qin J.
J Biol Chem (2007) 282(24): 17330-4
Energetics-based Protein Profiling on a Proteomic Scale: Identification of Proteins Resistant to Proteolysis
Park C, Zhou S, Gilmore J, Marqusee S.
J Mol Biol (2007) 368(5): 1426-37
A proteomic and targeted metabolomic approach to investigate change in Lolium perenne roots when challenged with glycine
Thornton B, Osborne SM, Paterson E, Cash P.
J Exp Bot (2007) 58(7): 1581-90
A proteomic approach to studying the differentiation of neural stem cells
Helena Skalnikova, Petr Halada, Petr Vodicka, Jan Motlik, Pavel Rehulka, Ole Horning, Josef Chmelik, Ole Norregaard Jensen, Hana Kovarova
PROTEOMICS (2007) 7(11): 1825-1838
Proteome and phosphoproteome dynamic change during cell dedifferentiation in Arabidopsis
Brahmananda Reddy Chitteti, Zhaohua Peng
PROTEOMICS (2007) 7(9): 1473-1500
Elongation of Axons during Regeneration Involves Retinal Crystallin {beta} b2 (crybb2)
Thomas Liedtke, Jens Christian Schwamborn, Uwe Schroer, and Solon Thanos
Mol Cell Proteomics (2007) 6(5): 895-907
Malaria Plasmodium agent induces alteration in the head proteome of their Anopheles mosquito host
Thierry Lefevre, Frederic Thomas, Alex Schwartz, Elena Levashina, Stephanie Blandin, Jean-Paul Brizard, Laure Le Bourligu, Edith Demettre, Francois Renaud, David G. Biron
PROTEOMICS (2007) 7(11): 1908-1915
Proteomic analysis of roots growth and metabolic changes under phosphorus deficit in maize (Zea mays L.) plants
Kunpeng Li, Changzheng Xu, Kewei Zhang, Aifang Yang, Juren Zhang
PROTEOMICS (2007) 7(9): 1501-1512
Collection and analysis of salivary proteins from the biting midge Culicoides nubeculosus (Diptera: Ceratopogonidae)
Langner KF, Darpel KE, Denison E, Drolet BS, Leibold W, Mellor PS, Mertens PP, Nimtz M, Greiser-Wilke I.
J Med Entomol (2007) 44(2): 238-48
Proteomic and peptidomic analysis of the venom from Chinese tarantula Chilobrachys jingzhao
Zhi Liao, Jia Cao, Shuiming Li, Xiaojun Yan, Weijun Hu, Quanyuan He, Jinjun Chen, Jianzhou Tang, Jinyun Xie, Songping Liang
PROTEOMICS (2007) 7(11): 1892-1907
Proteomics of primary mesenchymal stem cells
Roche S, Provansal M, Tiers L, Jorgensen C, Lehmann S.
Regen Med (2006) 1(4): 511-7
Multifunctional Proteins in Tumorigenesis: Aminoacyl-tRNA Synthetases and Translational Components
Won Lee, Sang; Sun Kang, Young; Kim, Sunghoon
Current Proteomics (2006) 3(4): 233-247
A proteomic study of the major allergens from yellow jacket venoms
Daniel Kolarich, Andreas Loos, Renaud Leonard, Lukas Mach, Gorji Marzban, Wolfgang Hemmer, Friedrich Altmann
PROTEOMICS (2007) 7(10): 1615-1623
Heat shock responses for understanding diseases of protein denaturation
Kim HJ, Hwang NR, Lee KJ.
Mol Cells (2007) 23(2): 123-31
Alterations in cytoskeletal and immune function-related proteome profiles in whole rat lung following intratracheal instillation of heparin
Gabr AA, Reed M, Newman DR, Pohl J, Khosla J, Sannes PL.
Respir Res (2007) 8(1): 36
The expression of S100A8 in pancreatic cancer-associated monocytes is associated with the Smad4 status of pancreatic cancer cells
Adnan A Sheikh, Dale Vimalachandran, Christopher C. Thompson, Rosalind E. Jenkins, Taoufik Nedjadi, Ali Shekouh, Fiona Campbell, Andrew Dodson, Wendy Prime, Tatjana Crnogorac-Jurcevic, Nicholas R. Lemoine, Eithne Costello
PROTEOMICS (2007) 7(11): 1929-1940
An evaluation of multidimensional fingerprinting in the context of clinical proteomics
Kossi Lekpor, Marie-Josee Benoit, Heather Butler, Michael Schirm, Daniela Vasilescu, Katherine Bonter, Daniel Chelsky, Patrice Hugo, Joanna Hunter, Gregory Opiteck, Eustache Paramithiotis, Paul Kearney
PROTEOMICS - Clinical Applications (2007) 1(5): 457-466
Proteomics analysis of plasma for potential biomarkers in the diagnosis of Alzheimer's disease
Pao-Chi Liao, Lung Yu, Chih-Chieh Kuo, Chingju Lin, Yu-Min Kuo
PROTEOMICS - Clinical Applications (2007) 1(5): 506-512
SELDI-TOF-MS ProteinChip array profiling of T-cell clones propagated in long-term culture identifies human profilin-1 as a potential bio-marker of immunosenescence
Mazzatti D, Pawelec G, Longdin R, Powell J, Forsey R
Proteome Science (2007) 5: 7
Proteomic Analysis of Protein Plugs: Causative Agent of Symptoms in Patients with Choledochal Cyst
Kaneko K, Ando H, Seo T, Ono Y, Tainaka T, Sumida W.
Dig Dis Sci Early Edition: published 6-Apr-2007
Nuclear structure as a source of cancer specific biomarkers
Leman ES, Getzenberg RH.
J Cell Biochem Early Edition: published 23-Apr-2007
Perspectives of clinical proteomics in gastrointestinal cancer
Ebert M, Xing X, Burgermeister E, Schmid R, Rocken C.
Expert Rev Anticancer Ther (2007) 7(4): 465-9
Interaction of amyloid binding alcohol dehydrogenase/Abeta mediates up-regulation of peroxiredoxin II in the brains of Alzheimer's disease patients and a transgenic Alzheimer's disease mouse model
Yao J, Taylor M, Davey F, Ren Y, Aiton J, Coote P, Fang F, Chen JX, Yan SD, Gunn-Moore FJ.
Mol Cell Neurosci (2007) 35(2): 377-82
Proteomic analysis of proteins regulated by TRPS1 transcription factor in DU145 prostate cancer cells
Chang GT, Gamble SC, Jhamai M, Wait R, Bevan CL, Brinkmann AO.
Biochim Biophys Acta (2007) 1774(5): 575-82
Proteomics of Canine Lymphoma Identifies Potential Cancer-Specific Protein Markers
McCaw DL, Chan AS, Stegner AL, Mooney B, Bryan JN, Turnquist SE, Henry CJ, Alexander H, Alexander S.
Clin Cancer Res (2007) 13(8): 2496-2503
Identification of Novel Proteins Associated with Both {alpha}-Synuclein and DJ-1
Jinghua Jin, G. Jane Li, Jeanne Davis, David Zhu, Yan Wang, Catherine Pan, and Jing Zhang
Mol Cell Proteomics (2007) 6(5): 845-859
Proteomic analysis of the serum in patients with idiopathic pulmonary arterial hypertension
Yu M, Wang XX, Zhang FR, Shang YP, Du YX, Chen HJ, Chen JZ.
J Zhejiang Univ Sci B (2007) 8(4): 221-7
Proteomic analysis of MOLT-4 cells treated by valproic acid
Vavrova J, Janovska S, Rezacova M, Hernychova L, Ticha Z, Vokurkova D, Zaskodova D, Lukasova E.
Mol Cell Biochem Early Edition: published 11-Apr-2007
Systematic Uncovering of Multiple Pathways Underlying the Pathology of Huntington Disease by an Acid-cleavable Isotope-coded Affinity Tag Approach
Ming-Chang Chiang, Chiun-Gung Juo, Hao-Hung Chang, Hui-Mei Chen, Eugene C. Yi, and Yijuang Chern
Mol Cell Proteomics (2007) 6(5): 781-797
Combined proteomic and metabonomic studies in three genetic forms of the renal Fanconi syndrome
Vilasi A, Cutillas PR, Maher AD, Zirah SF, Capasso G, Norden AW, Holmes E, Nicholson JK, Unwin RJ.
Am J Physiol Renal Physiol Early Edition: published 9-May-2007
Proteome analysis of whole saliva: A new tool for rheumatic diseases - the example of Sjogren's syndrome
Laura Giusti, Chiara Baldini, Laura Bazzichi, Federica Ciregia, Ilaria Tonazzini, Giovanni Mascia, Gino Giannaccini, Stefano Bombardieri, Antonio Lucacchini
PROTEOMICS (2007) 7(10): 1634-1643
New perspectives on an old disease: proteomics in cancer research
Gallego O, Gavin AC.
Genome Biol (2007) 8(4): 303
Potential biomarkers for diagnosis of sarcoidosis using proteomics in serum
Bons JA, Drent M, Bouwman FG, Mariman EC, van Dieijen-Visser MP, Wodzig WK.
Respir Med Early Edition: published 17-Apr-2007
Lacosamide: a review of preclinical properties
Beyreuther BK, Freitag J, Heers C, Krebsfanger N, Scharfenecker U, Stohr T.
CNS Drug Rev (2007) 13(1): 21-42
Study of urinary proteomes in patients with nephrotic syndrome
Vojtova L, Zima T, Tesar V, Kazderova M.
Folia Biol (Praha) (2007) 53(2): 58-65
High abundance synovial fluid proteome: distinct profiles in health and osteoarthritis
Gobezie R, Kho AT, Krastins B, Thornhill TS, Sarracino DA, Chase M, Millett PJ, Lee DM.
Arthritis Res Ther (2007) 9(2): R36
Proteomic profiling of MCF-7 breast cancer cells with chemoresistance to different types of anti-cancer drugs
Chuthapisith S, Layfield R, Kerr ID, Hughes C, Eremin O.
Int J Oncol (2007) 30(6): 1545-51
Genomic and Proteomic Screening of Apoptosis Mitochondrial Regulators for Drug Target Discovery
Lecellier G, Brenner C.
Curr Med Chem (2007) 14(8): 875-881
Comparative proteomic analysis for the detection of biomarkers in pancreatic ductal adenocarcinomas
Qi T, Han J, Cui Y, Zong M, Liu X, Zhu B.
J Clin Pathol Early Edition: published 5-Apr-2007
Protein profiling of oral brush biopsies: S100A8 and S100A9 can differentiate between normal, premalignant, and tumor cells
Oliver Driemel, Ulrike Murzik, Niko Escher, Christian Melle, Annett Bleul, Regine Dahse, Torsten Eugen Reichert, Gunter Ernst, Ferdinand von Eggeling
PROTEOMICS - Clinical Applications (2007) 1(5): 486-493
Comparative analysis of cell surface proteins in chronic and acute leukemia cell lines
Lee SJ, Kim KH, Park JS, Jung JW, Kim YH, Kim SK, Kim WS, Goh HG, Kim SH, Yoo JS, Kim DW, Kim KP.
Biochem Biophys Res Commun (2007) 357(3): 620-6
Identification of disease-associated proteins by proteomic approach in ankylosing spondylitis
Liu J, Zhu P, Peng J, Li K, Du J, Gu J, Ou Y.
Biochem Biophys Res Commun (2007) 357(2): 531-6
Proteome Analysis of Human Pancreatic Ductal Adenocarcinoma Tissue Using Two-Dimensional Gel Electrophoresis and Tandem Mass Spectrometry for Identification of Disease-Related Proteins
Tian R, Wei LM, Qin RY, Li Y, Du ZY, Xia W, Shi CJ, Jin H.
Dig Dis Sci Early Edition: published 11-May-2007
Differences in the proteome profile in placenta from normal term and preeclamptic preterm pregnancies
Rose P. Webster, Brad A. Pitzer, Victoria H. J. Roberts, Diane Brockman, Leslie Myatt
PROTEOMICS - Clinical Applications (2007) 1(5): 446-456
Analysis and Quantification of Diagnostic Serum Markers and Protein Signatures for Gaucher Disease
Johannes P. C. Vissers, James I. Langridge, and Johannes M. F. G. Aerts
Mol Cell Proteomics (2007) 6(5): 755-766
Proteomic analysis of rat penile tissue in a model of erectile dysfunction after radical prostatectomy
Liu X, Gao X, Pang J, Zhang Y, Wang K, Fang Y, Wen X, Cai Y.
BJU Int (2007) 99(6): 1500-5
Assessing osteolysis with use of high-throughput protein chips
Shanbhag AS, Kaufman AM, Hayata K, Rubash HE.
J Bone Joint Surg Am (2007) 89(5): 1081-9
Proteomic analysis of waldenstrom macroglobulinemia
Hatjiharissi E, Ngo H, Leontovich AA, Leleu X, Timm M, Melhem M, George D, Lu G, Ghobrial J, Alsayed Y, Zeismer S, Cabanela M, Nehme A, Jia X, Moreau AS, Treon SP, Fonseca R, Gertz MA, Anderson KC, Witzig TE, Ghobrial IM.
Cancer Res (2007) 67(8): 3777-84
Non-redundant Peptidomes from DAPs: Towards "The Vaccine"?
Kanduc D, Lucchese A, Mittelman A.
Autoimmun Rev (2007) 6(5): 290-4
Reply: Cerebrospinal fluid proteomics for biomarkers of Alzheimer's disease
Lee KH, Relkin NR.
Ann Neurol (2007) 61(5): 497-8
Proteomic Strategies for the Characterization and the Early Detection of Lung Cancer
Massion PP, Caprioli RM.
J Thorac Oncol (2006) 1(9): 1027-1039
Plasma Proteomic Analysis of Pancreatic Cancer by 2-Dimensional Gel Electrophoresis
Deng R, Lu Z, Chen Y, Zhou L, Lu X.
Pancreas (2007) 34(3): 310-317
Simultaneous proteomic and genomic analysis of primary Ta urothelial cell carcinomas for the prediction of tumor recurrence
Schultz IJ, De Kok JB, Witjes JA, Babjuk M, Willems JL, Wester K, Swinkels DW, Tjalsma H.
Anticancer Res (2007) 27(2): 1051-8
Serum albumin-associated peptides of patients with uterine endometrial cancer
Kikuchi S, Honda K, Handa Y, Kato H, Yamashita K, Umaki T, Shitashige M, Ono M, Tsuchida A, Aoki T, Hirohashi S, Yamada T.
Cancer Sci (2007) 98(6): 822-9
A native antigen 'reverse capture' microarray platform for autoantibody profiling of prostate cancer sera
Joshua R. Ehrlich, Robert J. Caiazzo Jr., Weiliang Qiu, Oliver W. Tassinari, Michael P. O'Leary, Jerome P. Richie, Brian C.-S. Liu
PROTEOMICS - Clinical Applications (2007) 1(5): 476-485
Oral fluid nanosensor test (OFNASET) with advanced electrochemical-based molecular analysis platform
Gau V, Wong D.
Ann N Y Acad Sci (2007) 1098: 401-10.
The 2006 Human Liver Proteome Project (HLPP) Workshops
Jose M. Mato, Fuchu He, Laura Beretta
PROTEOMICS - Clinical Applications (2007) 1(5): 442-445
Discovery of serum biomarkers in astrocytoma by SELDI-TOF MS and proteinchip technology
Zhang H, Wu G, Tu H, Huang F.
J Neurooncol Early Edition: published 24-Apr-2007
Proteomics-Based Approach To Detect and Identify Major Allergens in Processed Peanuts by Capillary LC-Q-TOF (MS/MS)
Chassaigne H, Norgaard JV, Hengel AJ.
J Agric Food Chem (2007) 55(11): 4461-73
The effects of sevoflurane anesthesia on rat brain proteins: a proteomic time-course analysis
Kalenka A, Hinkelbein J, Feldmann RE Jr, Kuschinsky W, Waschke KF, Maurer MH.
Anesth Analg (2007) 104(5): tables of contents
Characterization of apolipoprotein and apolipoprotein precursors in pancreatic cancer serum samples via two-dimensional liquid chromatography and mass spectrometry
Chen J, Anderson M, Misek DE, Simeone DM, Lubman DM.
J Chromatogr A Early Edition: published 30-Mar-2007
Protein profile of human lung squamous carcinoma cell line NCI-H226
Zhang H, Li N, Chen Y, Huang LY, Wang YC, Fang G, He DC, Xiao XY.
Biomed Environ Sci (2007) 20(1): 24-32
Potential biomarkers of an exaggerated response to endotoxemia
Kasthuri RS, Wroblewski M, Jilma B, Key NS, Nelsestuen GL.
Biomarkers (2007) 12(3): 287-302
Quantitative Analysis of HIV-1 Infected CD4+ Cell Proteome: Dysregulated Cell Cycle Progression and Nuclear Transport Coincide with Robust Virus Production
Chan EY, Qian WJ, Diamond DL, Liu T, Gritsenko MA, Monroe ME, Camp DG 2nd, Smith RD, Katze MG.
J Virol Early Edition: published 9-May-2007
Identification of human hepatocellular carcinoma-related proteins by proteomic approaches
Yang MH, Tyan YC, Jong SB, Huang YF, Liao PC, Wang MC.
Anal Bioanal Chem (2007) 388(3): 637-43
Molecular Biology, Genomics, and Proteomics in Bronchioloalveolar Carcinoma
Wislez M, Beer DG, Wistuba I, Cadranel J, Saijo N, Johnson BE.
J Thorac Oncol (2006) 1(9 Suppl): S8-S12
Genomic and proteomic microglial profiling: pathways for neuroprotective inflammatory responses following nerve fragment clearance and activation
Glanzer JG, Enose Y, Wang T, Kadiu I, Gong N, Rozek W, Liu J, Schlautman JD, Ciborowski PS, Thomas MP, Gendelman HE.
J Neurochem Early Edition: published 17-Apr-2007
New paradigms in heart-brain medicine: nonlinear physiology, state-dependent proteomics
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Cleve Clin J Med (2007) 74(Suppl 1): S79-85
Comparative Analysis of Serum Proteomes to Discover Biomarkers for Ossification of the Posterior Longitudinal Ligament
Eun JP, Ma TZ, Lee WJ, Kim MG, Yoo MJ, Koh EJ, Choi HY, Kwak YG.
Spine (2007) 32(7): 728-734
Differences in expression of retinal proteins between diabetic and normal rats
Liu SQ, Kang J, Li CJ, Tang EJ, Wen B, Cai R, Yang HJ.
World J Gastroenterol (2007) 13(14): 2118-24
An experimental strategy for quantitative analysis of the humoral immune response to prostate cancer antigens using natural protein microarrays
Sara Forrester, Ji Qiu, Leslie Mangold, Alan Partin, David Misek, Brett Phinney, Douglas Whitten, Philip Andrews, Eleftherios Diamandis, Gilbert S. Omenn, Samir Hanash, Brian B. Haab
PROTEOMICS - Clinical Applications (2007) 1(5): 494-505
Use of proteomics for the identification of novel drug targets in brain diseases
Moron JA, Devi LA.
J Neurochem Early Edition: published 10-Apr-2007
Proteomic analysis of up-regulated proteins in human promonocyte cells expressing severe acute respiratory syndrome coronavirus 3C-like protease
Chien-Chen Lai, Ming-Jia Jou, Shiuan-Yi Huang, Shih-Wein Li, Lei Wan, Fuu-Jen Tsai, Cheng-Wen Lin
PROTEOMICS (2007) 7(9): 1446-1460
Proteomic profiling: a novel method for differential diagnosis?
Glasker S, Lonser RR, Okamoto H, Li J, Jaffee H, Oldfield EH, Zhuang Z, Vortmeyer AO.
Cancer Biol Ther (2007) 6(3): 343-5
Is There a Role for Proteomics in Peyronie's Disease?
Domes T, De Young L, O'gorman DB, Gan BS, Bella AJ, Brock G.
J Sex Med Early Edition: published 6-Apr-2007
Integration of genomics, proteomics, and imaging for cardiac stem cell therapy
Chun HJ, Wilson KO, Huang M, Wu JC.
Eur J Nucl Med Mol Imaging Early Edition: published 27-Apr-2007
Elevated haptoglobin level of cerebrospinal fluid in Guillain-Barre syndrome revealed by proteomics analysis
Kuo-Hsuan Chang, Rong-Kuo Lyu, Mu-Yun Tseng, Long-Sun Ro, Yih-Ru Wu, Hong-Shiu Chang, Wen-Chuin Hsu, Hung-Chou Kuo, Chin-Chang Huang, Chun-Che Chu, Sen-Yung Hsieh, Chiung-Mei Chen
PROTEOMICS - Clinical Applications (2007) 1(5): 467-475
Proteomic identification of potential protein markers in cerebrospinal fluid of GBS patients
Jin T, Hu LS, Chang M, Wu J, Winblad B, Zhu J.
Eur J Neurol (2007) 14(5): 563-8
Diabetes-induced changes in the renal cortical proteome assessed with two-dimensional gel electrophoresis and mass spectrometry
Ronald G. Tilton, Sigmund J. Haidacher, Wanda S. LeJeune, Xiaoquan Zhang, Yingxin Zhao, Alexander Kurosky, Allan R. Brasier, Larry Denner
PROTEOMICS (2007) 7(10): 1729-1742
Embryology in the era of proteomics
Katz-Jaffe MG, Gardner DK.
Theriogenology Early Edition: published 1-May-2007
Proteomic analysis of adult S. mansoni gut contents
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Mol Biochem Parasitol (2007) 154(1): 95-7
Salivary protein/peptide profiling with SELDI-TOF-MS
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Ann N Y Acad Sci (2007) 1098: 498-503.
Establishment of a high-resolution 2-D reference map of human spermatozoal proteins from 12 fertile sperm-bank donors
Li LW, Fan LQ, Zhu WB, Nien HC, Sun BL, Luo KL, Liao TT, Tang L, Lu GX.
Asian J Androl (2007) 9(3): 321-9
A proteomics approach to identify the ubiquitinated proteins in mouse heart
Jeon HB, Choi ES, Yoon JH, Hwang JH, Chang JW, Lee EK, Choi HW, Park ZY, Yoo YJ.
Biochem Biophys Res Commun (2007) 357(3): 731-6
Proteomic analysis of gamma-butyrolactone-treated mouse thalamus reveals dysregulated proteins upon absence seizure
Ryu MJ, Kim D, Kang UB, Kim J, Shin HS, Lee C, Yu MH.
J Neurochem Early Edition: published 10-Apr-2007
Human saliva proteome analysis
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Ann N Y Acad Sci (2007) 1098: 323-9.
Sub-cellular localization and post-translational modifications of the Plasmodium yoelii enolase suggest moonlighting functions
Pal-Bhowmick I, Vora HK, Jarori GK.
Malar J (2007) 6(1): 45
Urine proteomics--prospects for future diagnostics
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Acta Physiol Hung (2007) 94(1-2): 133-41
Comparative proteomic analysis of cell lines and scrapings of the human intestinal epithelium
Lenaerts K, Bouwman FG, Lamers WH, Renes J, Mariman EC.
BMC Genomics (2007) 8(1): 91
Characterization of mature rat oligodendrocytes: a proteomic approach
Dumont D, Noben JP, Moreels M, Vanderlocht J, Hellings N, Vandenabeele F, Lambrichts I, Stinissen P, Robben J.
J Neurochem Early Edition: published 17-Apr-2007
Differential protein expression in pancreatic islets after treatment with an imidazoline compound
Jagerbrink T, Lexander H, Palmberg C, Shafqat J, Sharoyko V, Berggren PO, Efendic S, Zaitsev S, Jornvall H.
Cell Mol Life Sci (2007) 64(10): 1310-6
Quantitative proteomics of mouse brain and specific protein-interaction studies using stable isotope labeling
Sato T, Ishihama Y, Oda Y.
Methods Mol Biol (2007) 359: 53-70
Labeling and identification of LNCaP cell surface proteins: A pilot study
Whitaker HC, Stanbury DP, Brinham C, Girling J, Hanrahan S, Totty N, Neal DE.
Prostate (2007) 67(9): 943-54
Feasibility of two-dimensional gel electrophoresis used for proteomic analysis of human scleral fibroblasts
Lu F, Zhou X, Xie R, Wu Y, Hu Y, Zhang L, Li H, Mao X, Hu D, Qu J.
Curr Eye Res (2007) 32(4): 319-29
Electrophoretic separations of cerebrospinal fluid proteins in clinical investigations
D'Aguanno S, Del Boccio P, Bernardini S, Ballone E, Di Ilio C, Federici G, Urbani A.
Clin Chem Lab Med (2007) 45(4): 437-49
Proteomic Characterization of Tissue Expansion of Rice Scutellum Stimulated by Abscisic Acid
Asakura T, Hirose S, Asatsuma S, Nanjo Y, Nakaizumi T, Itoh K, Hori H, Komatsu S, Mitsui T.
Biosci Biotechnol Biochem (2007) 71(5): 1260-8
Bioinformatic analysis of outer membrane proteome of Neisseria meningitidis and Neisseria lactamica
Abel A, Sanchez S, Arenas J, Criado MT, Ferreiros CM.
Int Microbiol (2007) 10(1): 5-11
Genetic and proteomic characterization of rifaximin resistance in Bifidobacterium infantis BI07
Vitali B, Turroni S, Dal Piaz F, Candela M, Wasinger V, Brigidi P.
Res Microbiol (2007) 158(4): 355-62
Cell-free complements in vivo expression of the E. coli membrane proteome
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Protein Sci (2007) 16(5): 966-76
Differential analysis of protein expression of Bifidobacterium grown on different carbohydrates
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J Microbiol Methods (2007) 69(2): 364-70
Proteome analysis of Streptomyces coelicolor mutants affected in the proteasome system reveals changes in stress-responsive proteins
De Mot R, Schoofs G, Nagy I.
Arch Microbiol Early Edition: published 8-May-2007
Growth-related variations in the Bacillus cereus secretome
Nathalie Gilois, Nalini Ramarao, Laurent Bouillaut, Stephane Perchat, Stephane Aymerich, Christina Nielsen-LeRoux, Didier Lereclus, Michel Gohar
PROTEOMICS (2007) 7(10): 1719-1728
Francisella tularensis Genomics and proteomics
Titball RW, Petrosino JF.
Ann N Y Acad Sci Early Edition: published 13-Apr-2007
Detection of specific spectral markers of coxiella burnetii isolates by maldi-tof mass spectrometry
Skultety L, Hernychova L, Bereghazyova E, Slaba K, Toman R.
Acta Virol (2007) 51(1): 55-8
Quantitative Profile of the Uropathogenic Escherichia coli Outer Membrane Proteome During Growth in Human Urine
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Infect Immun Early Edition: published 9-Apr-2007
Group A streptococcus cell-associated pathogenic proteins as revealed by growth in hyaluronic acid-enriched media
Meng Zhang, Fiona M. McDonald, Shane S. Sturrock, Simon J. Charnock, Ian Humphery-Smith, Gary W. Black
PROTEOMICS (2007) 7(9): 1379-1390
A widespread picture of the Streptococcus thermophilus proteome by cell lysate fractionation and gel-based/gel-free approaches
Anna Maria Salzano, Simona Arena, Giovanni Renzone, Chiara D'Ambrosio, Rosario Rullo, Maurizio Bruschi, Luigi Ledda, Giuseppe Maglione, Giovanni Candiano, Lino Ferrara, Andrea Scaloni
PROTEOMICS (2007) 7(9): 1420-1433
Systematic investigation of lycopene effects in LNCaP cells by use of novel large-scale proteomic analysis software
Young Ah Goo, Zheng Li, Natasa Pajkovic, Scott Shaffer, Greg Taylor, Jinzhi Chen, David Campbell, Larry Arnstein, David R. Goodlett, Richard B. van Breemen
PROTEOMICS - Clinical Applications (2007) 1(5): 513-523
Pulmonary biomarkers based on alterations in protein expression after exposure to arsenic
Lantz RC, Lynch BJ, Boitano S, Poplin GS, Littau S, Tsaprailis G, Burgess JL.
Environ Health Perspect (2007) 115(4): 586-91
Peroxisomal proteomic approach for protein profiling in blue mussels (Mytilus edulis) exposed to crude oil
Mi J, Apraiz I, Cristobal S.
Biomarkers (2007) 12(1): 47-60
Proteomic changes of PC12 cells treated with proteasomal inhibitor PSI
Zhang L, Chang M, Li H, Hou S, Zhang Y, Hu Y, Han W, Hu L.
Brain Res Early Edition: published 30-Mar-2007
Proteomic analysis of pancreatic endocrine tumor cell lines treated with the histone deacetylase inhibitor trichostatin A
Daniela Cecconi, Massimo Donadelli, Sara Rinalducci, Lello Zolla, Maria Teresa Scupoli, Aldo Scarpa, Marta Palmieri, Pier Giorgio Righetti
PROTEOMICS (2007) 7(10): 1644-1653
Proteomic Characterization of Tissue Expansion of Rice Scutellum Stimulated by Abscisic Acid
Asakura T, Hirose S, Asatsuma S, Nanjo Y, Nakaizumi T, Itoh K, Hori H, Komatsu S, Mitsui T.
Biosci Biotechnol Biochem (2007) 71(5): 1260-8
Prevalidation of potential protein biomarkers in toxicology using iTRAQTM reagent technology
Matthias Gluckmann, Kerstin Fella, Dietmar Waidelich, Dietrich Merkel, Volker Kruft, Peter-Jurgen Kramer, Yvonne Walter, Jurgen Hellmann, Michael Karas, Michaela Kroger
PROTEOMICS (2007) 7(10): 1564-1574
Transcriptome and proteome analyses in response to 2-methylhydroquinone and 6-brom-2-vinyl-chroman-4-on reveal different degradation systems involved in the catabolism of aromatic compounds in Bacillus subtilis
Nguyen Van Duy, Carmen Wolf, Ulrike Mader, Michael Lalk, Peter Langer, Ulrike Lindequist, Michael Hecker, Haike Antelmann
PROTEOMICS (2007) 7(9): 1391-1408
Identification of differentially-expressed proteins in derivatives of Candida albicans displaying a stable histatin-3 resistant phenotype
Fitzgerald-Hughes DH, Coleman DC, Connell BC.
Antimicrob Agents Chemother Early Edition: published 7-May-2007
Chronic Cyclophosphamide Exposure Alters the Profile of Rat Sperm Nuclear Matrix Proteins
Codrington AM, Hales BF, Robaire B.
Biol Reprod Early Edition: published 2-May-2007
Proteomic exploitation on prothymosin alpha-induced mononuclear cell activation
Margarita Skopeliti, Ulrich Kratzer, Florian Altenberend, George Panayotou, Hubert Kalbacher, Stefan Stevanovic, Wolfgang Voelter, Ourania E. Tsitsilonis
PROTEOMICS (2007) 7(11): 1814-1824
Assessing osteolysis with use of high-throughput protein chips
Shanbhag AS, Kaufman AM, Hayata K, Rubash HE.
J Bone Joint Surg Am (2007) 89(5): 1081-9
Discovery of serum biomarkers in astrocytoma by SELDI-TOF MS and proteinchip technology
Zhang H, Wu G, Tu H, Huang F.
J Neurooncol Early Edition: published 24-Apr-2007
chip artifact CORRECTion (caCORRECT): A Bioinformatics System for Quality Assurance of Genomics and Proteomics Array Data
Stokes TH, Moffitt RA, Phan JH, Wang MD.
Ann Biomed Eng (2007) 35(6): 1068-80
Immunocell-array for Molecular Dissection of Multiple Signaling Pathways in Mammalian Cells
Andrea Zanardi, Luca Giorgetti, Oronza A. Botrugno, Saverio Minucci, Paolo Milani, Pier Giuseppe Pelicci, and Roberta Carbone
Mol Cell Proteomics (2007) 6(5): 939-947
Two-Dimensionally Self-Arranged Protein Nanoarrays on Diblock Copolymer Templates
Kumar N, Parajuli O, Hahm JI.
J Phys Chem B (2007) 111(17): 4581-7
SELDI-TOF-MS ProteinChip array profiling of T-cell clones propagated in long-term culture identifies human profilin-1 as a potential bio-marker of immunosenescence
Mazzatti D, Pawelec G, Longdin R, Powell J, Forsey R
Proteome Science (2007) 5: 7
Ultratrace liquid chromatography/mass spectrometry analysis of large peptides with post-translational modifications using narrow-bore poly(styrene-divinylbenzene) monolithic columns and extended range proteomic analysis
Zhang J, Wu SL, Kim J, Karger BL.
J Chromatogr A (2007) 1154(1-2): 295-307
Proteomic Mapping of 4-Hydroxynonenal Protein Modification Sites by Solid-Phase Hydrazide Chemistry and Mass Spectrometry
Roe MR, Xie H, Bandhakavi S, Griffin TJ.
Anal Chem (2007) 79(10): 3747-56
Improved protein identification efficiency by mass spectrometry using N-terminal chemical derivatization of peptides from Angiostrongylus costaricensis, a nematode with unknown genome
Ileana R. Leon, Ana G. C. Neves-Ferreira, Richard H. Valente, Ester M. Mota, Henrique L. Lenzi, Jonas Perales
Journal of Mass Spectrometry (2007) 42(6): 781-792
Proteomic analysis of age dependent nitration of rat cardiac proteins by solution isoelectric focusing coupled to nanoHPLC tandem mass spectrometry
Hong SJ, Gokulrangan G, Schoneich C.
Exp Gerontol (2007) 42(7): 639-51
The phosphorylation pattern of bovine heart complex I subunits
Giuseppe Palmisano, Anna Maria Sardanelli, Anna Signorile, Sergio Papa, Martin R. Larsen
PROTEOMICS (2007) 7(10): 1575-1583
Phosphoproteomics: Challenges and Opportunities
Lee, Kimberly A.; Means, Gary D.; Patterson, Scott D.
Current Proteomics (2006) 3(4): 249-257
Proteomic Analysis of Alternative Protein Tyrosine Phosphorylation in 1,2-Dichlorovinyl-Cysteine-induced Cytotoxicity in Primary Cultured Rat Renal Proximal Tubular Cells
de Graauw M, Le Devedec S, Tijdens I, Smeets MB, Deelder AM, van de Water B.
J Pharmacol Exp Ther Early Edition: published 18-Apr-2007
Mass spectrometric identification of N-linked glycopeptides using lectin-mediated affinity capture and glycosylation site-specific stable isotope tagging
Kaji H, Yamauchi Y, Takahashi N, Isobe T.
Nat Protoc (2006) 1(6): 3019-27
Lysine Propionylation and Butyrylation Are Novel Post-translational Modifications in Histones
Yue Chen, Robert Sprung, Yi Tang, Haydn Ball, Bhavani Sangras, Sung Chan Kim, John R. Falck, Junmin Peng, Wei Gu, and Yingming Zhao
Mol Cell Proteomics (2007) 6(5): 812-819
A rapid mass spectrometric strategy for the characterization of N- and O-glycan chains in the diagnosis of defects in glycan biosynthesis
Valegh Faid, Frederic Chirat, Nathalie Seta, Francois Foulquier, Willy Morelle
PROTEOMICS (2007) 7(11): 1800-1813
Sub-cellular localization and post-translational modifications of the Plasmodium yoelii enolase suggest moonlighting functions
Pal-Bhowmick I, Vora HK, Jarori GK.
Malar J (2007) 6(1): 45
Modificomics: Posttranslational modifications beyond protein phosphorylation and glycosylation
Reinders J, Sickmann A.
Biomol Eng (2007) 24(2): 169-77
Quantitative proteomic analysis of phosphotyrosine-mediated cellular signaling networks
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Proteomic approaches to studying protein tyrosine phosphatases
Liang F, Kumar S, Zhang ZY.
Mol Biosyst (2007) 3(5): 308-16
Characterization of antimicrobial histone sequences and posttranslational modifications by mass spectrometry
Severine A. Ouvry-Patat, Kevin L. Schey
Journal of Mass Spectrometry (2007) 42(5): 664-674
Multisite Protein Phosphorylation in Plants - Technical Considerations and Biological Implications
Wolschin, Florian; Chen, Yanmei; Weckwerth, Wolfram
Current Proteomics (2006) 3(4): 217-231
A DIGE-based approach to study interacting proteins
Lyakhovich A, Canals F, Nosov M, Surralles J.
J Biochem Biophys Methods (2007) 70(4): 693-5
Targeting protein-protein interactions: Lessons from p53/MDM2
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Biopolymers Early Edition: published 10-Apr-2007
A proteomic analysis of ATM/ATR substrates identifies the ubiquitin-proteosome system as a regulator for DNA damage checkpoints
Mu JJ, Wang Y, Luo H, Leng M, Zhang J, Yang T, Bessuso D, Jung SY, Qin J.
J Biol Chem (2007) 282(24): 17330-4
Quantitative proteomics of mouse brain and specific protein-interaction studies using stable isotope labeling
Sato T, Ishihama Y, Oda Y.
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A proteomic approach to study Cry1Ac binding proteins and their alterations in resistant Heliothis virescens larvae
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J Invertebr Pathol Early Edition: published 25-Mar-2007
Using stable isotope tagging and mass spectrometry to characterize protein complexes and to detect changes in their composition
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Methods Mol Biol (2007) 359: 17-35
Proteomic screen defines the Polo-box domain interactome and identifies Rock2 as a Plk1 substrate
Lowery DM, Clauser KR, Hjerrild M, Lim D, Alexander J, Kishi K, Ong SE, Gammeltoft S, Carr SA, Yaffe MB.
EMBO J (2007) 26(9): 2262-73
In-cell NMR for protein-protein interactions (STINT-NMR)
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Nat Protoc (2006) 1(1): 146-52
Protein complexes associated with the Kaposi's sarcoma-associated herpesvirus-encoded LANA
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Virology (2007) 364(2): 317-29
Quantitative proteomic analysis of mammalian organisms using metabolically labeled tissues
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A practical recipe for stable isotope labeling by amino acids in cell culture (SILAC)
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Nat Protoc (2006) 1(6): 2650-60
Quantitative carbamylation as a stable isotopic labeling method for comparative proteomics
Peggi M. Angel, Ron Orlando
Rapid Communications in Mass Spectrometry (2007) 21(10): 1623-1634
The use of a quantitative cysteinyl-peptide enrichment technology for high-throughput quantitative proteomics
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Stable isotope labeling by amino acids in cell culture for quantitative proteomics
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Differential protein labeling with thiol-reactive infrared DY-680 and DY-780 maleimides and analysis by two-dimensional gel electrophoresis
Irene M. Riederer, Beat M. Riederer
PROTEOMICS (2007) 7(11): 1753-1756
iTRAQ compatibility of peptide immobilized pH gradient isoelectric focusing
Johan Lengqvist, Kristina Uhlen, Janne Lehtio
PROTEOMICS (2007) 7(11): 1746-1752
Quantitative proteomic comparison of mouse peroxisomes from liver and kidney
Jia Mi, Eva Kirchner, Susana Cristobal
PROTEOMICS (2007) 7(11): 1916-1928
Quantitative proteome analysis using isotope-coded affinity tags and mass spectrometry
Shiio Y, Aebersold R.
Nat Protoc (2006) 1(1): 139-45
Prevalidation of potential protein biomarkers in toxicology using iTRAQTM reagent technology
Matthias Gluckmann, Kerstin Fella, Dietmar Waidelich, Dietrich Merkel, Volker Kruft, Peter-Jurgen Kramer, Yvonne Walter, Jurgen Hellmann, Michael Karas, Michaela Kroger
PROTEOMICS (2007) 7(10): 1564-1574
Computational analysis of quantitative proteomics data using stable isotope labeling
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Methods Mol Biol (2007) 359: 177-89
Comparison of Full Versus Partial Metabolic Labeling for Quantitative Proteomics Analysis in Arabidopsis thaliana
Edward L. Huttlin, Adrian D. Hegeman, Amy C. Harms, and Michael R. Sussman
Mol Cell Proteomics (2007) 6(5): 860-881
Quantification of proteins and metabolites by mass spectrometry without isotopic labeling
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Multiplexed absolute quantification for proteomics using concatenated signature peptides encoded by QconCAT genes
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Nat Protoc (2006) 1(2): 1029-43
Quantitative proteomic analysis of phosphotyrosine-mediated cellular signaling networks
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Protein identification using mass spectrometry: a method overview
Schuchardt S, Sickmann A.
EXS (2007) 97: 141-70
Tissue subcellular fractionation and protein extraction for use in mass-spectrometry-based proteomics
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Quantitative proteomic analysis of mammalian organisms using metabolically labeled tissues
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Genomics and proteomics in neoplasia
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Indian J Pathol Microbiol (2007) 50(1): 1-5
Cardiovascular proteomics : past, present, and future
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Mol Diagn Ther (2007) 11(2): 83-95
An introduction into proteomics and its clinical applications
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Saudi Med J (2007) 28(4): 499-507
Contribution of oncoproteomics to cancer biomarker discovery
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Mol Cancer (2007) 6(1): 25
Electrophoretic separations of cerebrospinal fluid proteins in clinical investigations
D'Aguanno S, Del Boccio P, Bernardini S, Ballone E, Di Ilio C, Federici G, Urbani A.
Clin Chem Lab Med (2007) 45(4): 437-49
Positional proteomics: preparation of amino-terminal peptides as a strategy for proteome simplification and characterization
McDonald L, Beynon RJ.
Nat Protoc (2006) 1(4): 1790-8
The use of a quantitative cysteinyl-peptide enrichment technology for high-throughput quantitative proteomics
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Integration of genomics, proteomics, and imaging for cardiac stem cell therapy
Chun HJ, Wilson KO, Huang M, Wu JC.
Eur J Nucl Med Mol Imaging Early Edition: published 27-Apr-2007
Oral diseases: from detection to diagnostics
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Ann N Y Acad Sci (2007) 1098: 200-3.
An isotope coding strategy for proteomics involving both amine and carboxyl group labeling
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High performance liquid chromatography and capillary electrophoresis in the analysis of soybean proteins and peptides in foodstuffs
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Advances in fungal proteomics
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Microbiol Res Early Edition: published 8-May-2007
Towards Proteomic Approaches for the Identification of Structural Disorder
Csizmok V, Dosztanyi Z, Simon I, Tompa P.
Curr Protein Pept Sci (2007) 8(1): 173-179
Two-dimensional fluorescence difference gel electrophoresis for comparative proteomics profiling
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Nat Protoc (2006) 1(4): 1732-42
Quantitative proteomic approach to study subcellular localization of membrane proteins
Sadowski PG, Dunkley TP, Shadforth IP, Dupree P, Bessant C, Griffin JL, Lilley KS.
Nat Protoc (2006) 1(4): 1778-89
Genomics and proteomics in process development: opportunities and challenges
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Trends Biotechnol (2007) 25(7): 324-30
Using stable isotope tagging and mass spectrometry to characterize protein complexes and to detect changes in their composition
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Methods Mol Biol (2007) 359: 17-35
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An improved strategy for selective and efficient enrichment of integral plasma membrane proteins of mycobacteria
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PROTEOMICS (2007) 7(9): 1360-1363
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Luca Bini, Vitaliano Pallini, Denis F. Hochstrasser, Jean-Charles Sanchez
PROTEOMICS (2007) 7(10): 1561-1563
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PROTEOMICS (2007) 7(11): 1744-1745
Recent patent applications in proteomics
[No authors listed]
Nat Biotechnol (2007) 25(4): 425