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SPS' DigestIssue 43, 3-Aug-2007 |
Sequence similarity-driven proteomics in organisms with unknown genomes by LC-MS/MS and automated de novo sequencing
Patrice Waridel, Ari Frank, Henrik Thomas, Vineeth Surendranath, Shamil Sunyaev, Pavel Pevzner, Andrej Shevchenko
PROTEOMICS (2007) 7(14): 2318-2329
Systematic Discovery of In Vivo Phosphorylation Networks
Linding R, Jensen LJ, Ostheimer GJ, van Vugt MA, Jorgensen C, Miron IM, Diella F, Colwill K, Taylor L, Elder K, Metalnikov P, Nguyen V, Pasculescu A, Jin J, Park JG, Samson LD, Woodgett JR, Russell RB, Bork P, Yaffe MB, Pawson T.
Cell Early Edition: published 12-Jun-2007
MASPECTRAS: a platform for management and analysis of proteomics LC-MS/MS data
Hartler J, Thallinger GG, Stocker G, Sturn A, Burkard TR, Korner E, Rader R, Schmidt A, Mechtler K, Trajanoski Z.
BMC Bioinformatics (2007) 8(1): 197
Probabilistic prediction and ranking of human protein-protein interactions
Scott MS, Barton GJ.
BMC Bioinformatics (2007) 8(1): 239
Current trends in computational inference from mass spectrometry-based proteomics
Webb-Robertson BJ, Cannon WR.
Brief Bioinform Early Edition: published 20-Jun-2007
MSNovo: A Dynamic Programming Algorithm for de Novo Peptide Sequencing via Tandem Mass Spectrometry
Mo L, Dutta D, Wan Y, Chen T.
Anal Chem (2007) 79(13): 4870-8
myProMS, a web server for management and validation of mass spectrometry-based proteomic data
Patrick Poullet, Sabrina Carpentier, Emmanuel Barillot
PROTEOMICS (2007) 7(15): 2553-2556
Using dynamic programming to create isotopic distribution maps from mass spectra
Sean McIlwain, David Page, Edward L. Huttlin, and Michael R. Sussman
Bioinformatics (2007) 23(13): i328-i336
Data reduction of isotope-resolved LC-MS spectra
Peicheng Du, Rajagopalan Sudha, Michael B. Prystowsky, and Ruth Hogue Angeletti
Bioinformatics (2007) 23(11): 1394-1400
Interpretation support for multistage MS: A mathematical method for theoretical generation of glycan fragments and calculation of their masses
Ningombam Sanjib Meitei, Snigdha Banerjee
PROTEOMICS (2007) 7(15): 2530-2540
High-Speed Data Reduction, Feature Detection, and MS/MS Spectrum Quality Assessment of Shotgun Proteomics Data Sets Using High-Resolution Mass Spectrometry
Hoopmann MR, Finney GL, Maccoss MJ.
Anal Chem Early Edition: published 21-Jun-2007
PQuad a visual analysis platform for proteomic data exploration of microbial organisms
Bobbie-Jo M. Webb-Robertson, Elena S. Peterson, Mudita Singhal, Kyle R. Klicker, Christopher S. Oehmen, Joshua N. Adkins, and Susan L. Havre
Bioinformatics (2007) 23(13): 1705-1707
Computational approach for identification and characterization of GPI-anchored peptides in proteomics experiments
Miren J. Omaetxebarria, Felix Elortza, Eva Rodríguez-Suárez, Kerman Aloria, Jesus M. Arizmendi, Ole N. Jensen, Rune Matthiesen
PROTEOMICS (2007) 7(12): 1951-1960
Tools and strategies for visualization of large image data sets in high-resolution imaging mass spectrometry
Klinkert I, McDonnell LA, Luxembourg SL, Maarten Altelaar AF, Amstalden ER, Piersma SR, Heeren RM.
Rev Sci Instrum (2007) 78(5): 053716
Regression analysis and modelling of data acquisition for SELDI-TOF mass spectrometry
Martin Skold, Tobias Ryden, Viktoria Samuelsson, Charlotte Bratt, Lars Ekblad, Hakan Olsson, and Bo Baldetorp
Bioinformatics (2007) 23(11): 1401-1409
A multivariate analysis approach to the integration of proteomic and gene expression data
Ailís Fagan, Aedín C. Culhane, Desmond G. Higgins
PROTEOMICS (2007) 7(13): 2162-2171
A multiresolution approach to automated classification of protein subcellular location images
Chebira A, Barbotin Y, Jackson C, Merryman T, Srinivasa G, Murphy RF, Kovacevic J.
BMC Bioinformatics (2007) 8(1): 210
ProMEX: a mass spectral reference database for proteins and protein phosphorylation sites
Hummel J Jh, Niemann M Mn, Wienkoop S Sw, Schulze W Ws, Steinhaeuser D Ds, Selbig J Js, Walther D Dw, Weckwerth W Ww.
BMC Bioinformatics (2007) 8(1): 216
The relationships between the isoelectric point and the length of proteins, taxonomy and ecology of organisms
Kiraga J, Mackiewicz P, Mackiewicz D, Kowalczuk M, Biecek P, Polak N, Smolarczyk K, Dudek MR, Cebrat S.
BMC Genomics (2007) 8(1): 163
Interrogation of MS/MS search data with an pI Filter algorithm to increase protein identification success
Nkemdilim C. Uwaje, Nikola S. Mueller, Giuseppina Maccarrone, Christoph W. Turck
ELECTROPHORESIS (2007) 28(12): 1867-1874
Precise protein quantification based on peptide quantification using iTRAQ
Boehm AM, Puetz S, Altenhofer D, Sickmann A, Falk M.
BMC Bioinformatics (2007) 8(1): 214
Improving the success rate of proteome analysis by modeling protein-abundance distributions and experimental designs
Eriksson J, Fenyo D.
Nat Biotechnol (2007) 25(6): 651-5
Integration of bioinformatics resources for functional analysis of gene expression and proteomic data
Huang H, Hu ZZ, Arighi CN, Wu CH.
Front Biosci (2007) 12: 5071-5088.
Spectral networks: a new approach to de novo discovery of protein sequences and posttranslational modifications
Bandeira N.
Biotechniques (2007) 42(6): 691 passim
Probability-Based Pattern Recognition and Statistical Framework for Randomization: Modeling Tandem Mass Spectrum/Peptide Sequence False Match Frequencies
Feng J, Naiman DQ, Cooper B.
Bioinformatics Early Edition: published 17-May-2007
The PSI formal document process and its implementation on the PSI website
Juan Antonio Vizcaíno, Lennart Martens, Henning Hermjakob, Randall K. Julian, Norman W. Paton
PROTEOMICS (2007) 7(14): 2355-2357
A systems biology approach to the study of Cisplatin drug resistance in ovarian cancers
Chen JY, Yan Z, Shen C, Fitzpatrick DP, Wang M.
J Bioinform Comput Biol (2007) 5(2): 383-405
Guilt-by-association feature selection: Identifying biomarkers from proteomic profiles
Shin H, Sheu B, Joseph M, Markey MK.
J Biomed Inform Early Edition: published 14-Apr-2007
Learning to extract relations for protein annotation
Jee-Hyub Kim, Alex Mitchell, Teresa K. Attwood, and Melanie Hilario
Bioinformatics (2007) 23(13): i256-i263
A geometric approach for the alignment of liquid chromatography mass spectrometry data
Eva Lange, Clemens Gropl, Ole Schulz-Trieglaff, Andreas Leinenbach, Christian Huber, and Knut Reinert
Bioinformatics (2007) 23(13): i273-i281
Proteome analysis of the Atlantic salmon (Salmo salar) cell line SHK-1 following recombinant IFN-? stimulation
Samuel A. M. Martin, Bimal P. Mohanty, Phillip Cash, Dominic F. Houlihan, Christopher J. Secombes
PROTEOMICS (2007) 7(13): 2275-2286
Proteomic analysis of core breakdown disorder in Conference pears (Pyrus communis L.)
Romina Pedreschi, Els Vanstreels, Sebastien Carpentier, Maarten Hertog, Jeroen Lammertyn, Johan Robben, Jean-Paul Noben, Rony Swennen, Jozef Vanderleyden, Bart M. Nicolaï
PROTEOMICS (2007) 7(12): 2083-2099
Src family kinase-mediated negative regulation of hematopoietic stem cell mobilization involves both intrinsic and microenvironmental factors
Borneo J, Munugalavadla V, Sims EC, Vemula S, Orschell CM, Yoder M, Kapur R.
Exp Hematol (2007) 35(7): 1026-37
Identification of the major protein components of rice egg cells
Uchiumi T, Shinkawa T, Isobe T, Okamoto T.
J Plant Res (2007) 120(4): 575-9
Broad spectrum identification of SUMO substrates in melanoma cells
Anand K. Ganesan, Yoonjung Kho, Sung Chan Kim, Yue Chen, Yingming Zhao, Michael A. White
PROTEOMICS (2007) 7(13): 2216-2221
Comparison of Sarcoplasmic Proteomes between Two Groups of Pig Muscles Selected for Shear Force of Cooked Meat
Laville E, Sayd T, Terlouw C, Chambon C, Damon M, Larzul C, Leroy P, Glenisson J, Cherel P.
J Agric Food Chem (2007) 55(14): 5834-5841
Proteomics of ionically bound and soluble extracellular proteins in Medicago truncatula leaves
Nelson C. Soares, Rita Francisco, Cândido P. Ricardo, Phil A. Jackson
PROTEOMICS (2007) 7(12): 2070-2082
A proteomic approach to analysis of antimicrobial activity in marsupial pouch secretions
Ambatipudi K, Joss J, Raftery M, Deane E.
Dev Comp Immunol Early Edition: published 4-Jun-2007
Comparative Proteomics of Excretory-Secretory Proteins Released by the Liver Fluke Fasciola hepatica in Sheep Host Bile and during in Vitro Culture ex Host
Russell M. Morphew, Hazel A. Wright, E. James LaCourse, Debra J. Woods, and Peter M. Brophy
Mol Cell Proteomics (2007) 6(6): 963-972
The Myotonic Dystrophy Type 2 Protein ZNF9 Is Part of an ITAF Complex That Promotes Cap-independent Translation
Vincent R. Gerbasi and Andrew J. Link
Mol Cell Proteomics (2007) 6(6): 1049-1058
A proteomic approach towards the Hsp90-dependent ubiquitinylated proteome
S. Fabio Falsone, Bernd Gesslbauer, Angelika Rek, Andreas J. Kungl
PROTEOMICS (2007) 7(14): 2375-2383
Proteomic Analysis of in Vivo 14-3-3 Interactions in the Yeast Saccharomyces cerevisiae
Kakiuchi K, Yamauchi Y, Taoka M, Iwago M, Fujita T, Ito T, Song SY, Sakai A, Isobe T, Ichimura T.
Biochemistry (2007) 46(26): 7781-92
Genome-wide transcriptomic and proteomic analysis of the primary response to phosphate limitation in Streptomyces coelicolor M145 and in a ?phoP mutant
Antonio Rodríguez-García, Carlos Barreiro, Fernando Santos-Beneit, Alberto Sola-Landa, Juan F. Martín
PROTEOMICS (2007) 7(14): 2410-2429
A further proteomic study on the effect of iron in the human pathogen Trichomonas vaginalis
Jose Batista De Jesus, Patrícia Cuervo, Magno Junqueira, Constança Britto, Fernando Costa e Silva-Filho, Maurílio Jose Soares, Elisa Cupolillo, Octavio Fernandes, Gilberto Barbosa Domont
PROTEOMICS (2007) 7(12): 1961-1972
Nuclear protein profiling of Jurkat cells during heat stress-induced apoptosis by 2-DE and MS/MS
Xiaoqin Yuan, Yasuhiro Kuramitsu, Hiroko Furumoto, Xiulian Zhang, Eiko Hayashi, Masanori Fujimoto, Kazuyuki Nakamura
ELECTROPHORESIS (2007) 28(12): 2018-2026
Proteomic analysis of day-night variations in protein levels in the rat pineal gland
Morten Møller, Thomas Sparre, Nicolai Bache, Peter Roepstorff, Henrik Vorum
PROTEOMICS (2007) 7(12): 2009-2018
The Simpson-Golabi-Behmel syndrome causative Glypican-3, binds to and inhibits the dipeptidyl peptidase activity of CD26
Jamshid Davoodi, John Kelly, Nathalie H. Gendron, Alex E. MacKenzie
PROTEOMICS (2007) 7(13): 2300-2310
Comparative Cytochrome P450 Proteomics in the Livers of Immunodeficient Mice Using 18O Stable Isotope Labeling
Catherine S. Lane, Yuqin Wang, Richard Betts, William J. Griffiths, and Laurence H. Patterson
Mol Cell Proteomics (2007) 6(6): 953-962
Functional proteomic view of metabolic regulation in ?Aromatoleum aromaticum? strain EbN1
Lars Wöhlbrand, Birte Kallerhoff, Daniela Lange, Peter Hufnagel, Jürgen Thiermann, Richard Reinhardt, Ralf Rabus
PROTEOMICS (2007) 7(13): 2222-2239
Evolution of 2-DE protein patterns in a mussel hybrid zone
Angel P. Diz, David O. F. Skibinski
PROTEOMICS (2007) 7(12): 2111-2120
Subcellular proteomics of cell differentiation: Quantitative analysis of the plasma membrane proteome of Caco-2 cells
Alexey V. Pshezhetsky, Michael Fedjaev, Lyudmila Ashmarina, Alexander Mazur, Lorne Budman, Daniel Sinnett, Damian Labuda, Jean-François Beaulieu, Daniel Ménard, Ilya Nifant'ev, Émile Levy
PROTEOMICS (2007) 7(13): 2201-2215
Schistosome biology and proteomics: Progress and challenges
van Hellemond JJ, van Balkom BW, Tielens AG.
Exp Parasitol Early Edition: published 23-May-2007
Excretory-secretory proteome of larval Schistosoma mansoni and Echinostoma caproni, two parasites of Biomphalaria glabrata
Guillou F, Roger E, Mone Y, Rognon A, Grunau C, Theron A, Mitta G, Coustau C, Gourbal BE.
Mol Biochem Parasitol (2007) 155(1): 45-56
Regulation of the protein disulfide proteome by mitochondria in mammalian cells
Yang Y, Song Y, Loscalzo J.
Proc Natl Acad Sci U S A (2007) 104(26): 10813-7
Identification of immuno-reactive proteins from a sheep gastrointestinal nematode, Trichostrongylus colubriformis, using two-dimensional electrophoresis and mass spectrometry
Kiel M, Josh P, Jones A, Windon R, Hunt P, Kongsuwan K.
Int J Parasitol Early Edition: published 10-May-2007
Binding of human plasminogen to Bifidobacterium
Candela M, Bergmann S, Vici M, Vitali B, Turroni S, Eikmanns BJ, Hammerschmidt S, Brigidi P.
J Bacteriol Early Edition: published 8-Jun-2007
Diversity of Translation Start Sites May Define Increased Complexity of the Human Short ORFeome
Masaaki Oyama, Hiroko Kozuka-Hata, Yutaka Suzuki, Kentaro Semba, Tadashi Yamamoto, and Sumio Sugano
Mol Cell Proteomics (2007) 6(6): 1000-1006
Proteome analysis of proliferative response of bystander cells adjacent to cells exposed to ionizing radiation
Bogdan I. Gerashchenko, Akira Yamagata, Ken Oofusa, Katsutoshi Yoshizato, Sonia M. de Toledo, Roger W. Howell
PROTEOMICS (2007) 7(12): 2000-2008
Evaluation of hepatitis B virus replication and proteomic analysis of HepG2.2.15 cell line after cyclosporine A treatment
Xie HY, Xia WL, Zhang CC, Wu LM, Ji HF, Cheng Y, Zheng SS.
Acta Pharmacol Sin (2007) 28(7): 975-984
Proteomics Identification of Sorting Nexin 27 as a Diacylglycerol Kinase {zeta}-associated Protein: New Diacylglycerol Kinase Roles in Endocytic Recycling
Esther Rincon, Teresa Santos, Antonia Avila-Flores, Juan P. Albar, Vasiliki Lalioti, Cai Lei, Wanjin Hong, and Isabel Merida
Mol Cell Proteomics (2007) 6(6): 1073-1087
Proteomics of European beech (Fagus sylvatica L.) seed dormancy breaking: Influence of abscisic and gibberellic acids
Tomasz Andrzej Paw?owski
PROTEOMICS (2007) 7(13): 2246-2257
Qualitative and comparative proteomic analysis of Xanthomonas campestris pv. campestris 17
Wei-Jen Chung, Hung-Yu Shu, Chi-Yu Lu, Chiu-Yi Wu, Yi-Hsiung Tseng, Shih-Feng Tsai, Chao-Hsiung Lin
PROTEOMICS (2007) 7(12): 2047-2058
In-depth Analysis of the Adipocyte Proteome by Mass Spectrometry and Bioinformatics
Jun Adachi, Chanchal Kumar, Yanling Zhang, and Matthias Mann
Mol Cell Proteomics (2007) 6(7): 1257-1273
Effect of proteasome inhibitor clasto-lactacystin-beta-lactone on the proteome of the haloarchaeon Haloferax volcanii
Kirkland PA, Reuter CJ, Maupin-Furlow JA.
Microbiology (2007) 153(Pt 7): 2271-80
Comparison of growth-phase-dependent cytosolic proteomes of two Lactobacillus plantarum strains used in food and feed fermentations
Koistinen KM, Plumed-Ferrer C, Lehesranta SJ, Karenlampi SO, von Wright A.
FEMS Microbiol Lett (2007) 273(1): 12-21
Subcellular proteomics of mice gastrocnemius and soleus muscles>
Vitorino R, Ferreira R, Neuparth M, Guedes S, Williams J, Tomer KB, Domingues PM, Appell HJ, Duarte JA, Amado FM.
Anal Biochem (2007) 366(2): 156-69
Impaired processing of FLP and NLP peptides in carboxypeptidase E (EGL-21)-deficient Caenorhabditis elegans as analyzed by mass spectrometry
Husson SJ, Janssen T, Baggerman G, Bogert B, Kahn-Kirby AH, Ashrafi K, Schoofs L.
J Neurochem (2007) 102(1): 246-60
Reconstructing the evolution of the mitochondrial ribosomal proteome
Smits P, Smeitink JA, van den Heuvel LP, Huynen MA, Ettema TJ.
Nucleic Acids Res Early Edition: published 29-Jun-2007
Proteome analysis and characterization of phenotypes of lesion mimic mutant spotted leaf 6 in rice
Sang Gu Kang, Mohammad Nurul Matin, Hanhong Bae, Savithiry Natarajan
PROTEOMICS (2007) 7(14): 2447-2458
The citrus fruit proteome: insights into citrus fruit metabolism
Katz E, Fon M, Lee YJ, Phinney BS, Sadka A, Blumwald E.
Planta Early Edition: published 31-May-2007
Protein prenylation in an insect cell-free protein synthesis system and identification of products by mass spectrometry
Takashi Suzuki, Masaaki Ito, Toru Ezure, Masamitsu Shikata, Eiji Ando, Toshihiko Utsumi, Susumu Tsunasawa, Osamu Nishimura
PROTEOMICS (2007) 7(12): 1942-1950
Proteomic analysis of a hypochlorous acid-tolerant Listeria monocytogenes cultural variant exhibiting enhanced biofilm production
Folsom JP, Frank JF.
J Food Prot (2007) 70(5): 1129-36
Novel eye-specific calmodulin methylation characterized by protein mapping in Drosophila melanogaster
Nobuaki Takemori, Naoka Komori, James N. Thompson Jr., Masa-Toshi Yamamoto, Hiroyuki Matsumoto
PROTEOMICS (2007) 7(15): 2651-2658
Using proteomics to understand avian systems biology and infectious disease
Liu HC, Hicks JA.
Poult Sci (2007) 86(7): 1523-9
Identification of Glioma Neovascularization-related Proteins by Using MALDI-FTMS and Nano-LC Fractionation to Microdissected Tumor Vessels
Dana A. N. Mustafa, Peter C. Burgers, Lennard J. Dekker, Halima Charif, Mark K. Titulaer, Peter A. E. Sillevis Smitt, Theo M. Luider, and Johan M. Kros
Mol Cell Proteomics (2007) 6(7): 1147-1157
Proteomic profiling reveals a severely perturbed protein expression pattern in aged skeletal muscle
O'connell K, Gannon J, Doran P, Ohlendieck K.
Int J Mol Med (2007) 20(2): 145-53
Proteomics Analysis of Insulin Secretory Granules
Yannick Brunner, Yohann Coute, Mariella Iezzi, Michelangelo Foti, Mitsonuri Fukuda, Denis F. Hochstrasser, Claes B. Wollheim, and Jean-Charles Sanchez
Mol Cell Proteomics (2007) 6(6): 1007-1017
Post-translational modifications of the basic peroxidase isoenzyme from Zinnia elegans
Gabaldon C, Gomez-Ros LV, Nunez-Flores MJ, Esteban-Carrasco A, Barcelo AR.
Plant Mol Biol Early Edition: published 22-Jun-2007
Proteomics Demonstration That Normal Breast Epithelial Cells Can Induce Apoptosis of Breast Cancer Cells through Insulin-like Growth Factor-binding Protein-3 and Maspin
Robert-Alain Toillon, Chann Lagadec, Adeline Page, Valerie Chopin, Pierre-Eric Sautiere, Jean-Marc Ricort, Jerome Lemoine, Ming Zhang, Hubert Hondermarck, and Xuefen Le Bourhis
Mol Cell Proteomics (2007) 6(7): 1239-1247
The proteasome and its role in nuclear protein maintenance
Bader N, Jung T, Grune T.
Exp Gerontol Early Edition: published 10-Apr-2007
The hard cell: From proteomics to a whole cell model
Betts MJ, Russell RB.
FEBS Lett (2007) 581(15): 2870-6
The Secreted Signaling Protein Factor C Triggers the A-factor Response Regulon in Streptomyces griseus: Overlapping Signaling Routes
Zsuzsanna Birko, Sylwia Bialek, Krisztina Buzas, Emilia Szajli, Bjorn A. Traag, Katalin F. Medzihradszky, Sebastien Rigali, Erik Vijgenboom, Andras Penyige, Zoltan Kele, Gilles P. van Wezel, and Sandor Biro
Mol Cell Proteomics (2007) 6(7): 1248-1256
Myelin basic protein as a binding partner and calmodulin adaptor for the BKCa channel
Hyunyoung Kim, Sooyeon Jo, Hye-Jin Song, Zee-Yong Park, Chul-Seung Park
PROTEOMICS (2007) 7(15): 2591-2602
Proteome and cytoskeleton responses in osteosarcoma cells with reduced OXPHOS activity
Johanna Annunen-Rasila, Steffen Ohlmeier, Hanna Tuokko, Johanna Veijola, Kari Majamaa
PROTEOMICS (2007) 7(13): 2189-2200
A comparative approach towards thylakoid membrane proteome analysis of unicellular green alga Scenedesmus obliquus
Kantzilakis K, Aivaliotis M, Kotakis C, Krasanakis F, Rizos AK, Kotzabasis K, Tsiotis G.
Biochim Biophys Acta Early Edition: published 13-May-2007
Medicago truncatula Root Nodule Proteome Analysis Reveals Differential Plant and Bacteroid Responses to Drought Stress
Larrainzar E, Wienkoop S, Weckwerth W, Ladrera R, Arrese-Igor C, Gonzalez EM.
Plant Physiol Early Edition: published 1-Jun-2007
Modifications of plasma proteome in long-lived rats fed on a coenzyme Q(10)-supplemented diet
Santos-Gonzalez M, Gomez Diaz C, Navas P, Villalba JM.
Exp Gerontol Early Edition: published 10-May-2007
Identification of Secretory Granule Phosphatidylinositol 4,5-Bisphosphate-interacting Proteins Using an Affinity Pulldown Strategy
Shona L. Osborne, Tristan P. Wallis, Jose L. Jimenez, Jeffrey J. Gorman, and Frederic A. Meunier
Mol Cell Proteomics (2007) 6(7): 1158-1169
Enhanced Separation of Membranes during Free Flow Zonal Electrophoresis in Plants
Barkla BJ, Vera-Estrella R, Pantoja O.
Anal Chem (2007) 79(14): 5181-7
Proteomics: inspiring new hypotheses in the vasopressin system
Leng G.
Endocrinology (2007) 148(7): 3039-40
Proteomic changes in mammalian spermatozoa during epididymal maturation
Aitken RJ, Nixon B, Lin M, Koppers AJ, Lee YH, Baker MA.
Asian J Androl (2007) 9(4): 554-64
Characterization of citrate utilization in Corynebacterium glutamicum by transcriptome and proteome analysis
Polen T, Schluesener D, Poetsch A, Bott M, Wendisch VF.
FEMS Microbiol Lett (2007) 273(1): 109-19
Proteomic analysis of the cambial region in juvenile Eucalyptus grandis at three ages
Paola Alejandra Fiorani Celedon, Alexander de Andrade, Karem Guimarães Xavier Meireles, Mayra Costa da Cruz Gallo de Carvalho, Danielle Gregorio Gomes Caldas, David Henry Moon, Raphael Tozelli Carneiro, Lívia Maria Franceschini, Shinitiro Oda, Carlos Alberto Labate
PROTEOMICS (2007) 7(13): 2258-2274
The Diversity of Bioactive Proteins in Australian Snake Venoms
Geoff W. Birrell, Stephen T. H. Earl, Tristan P. Wallis, Paul P. Masci, John de Jersey, Jeffrey J. Gorman, and Martin F. Lavin
Mol Cell Proteomics (2007) 6(6): 973-986
Investigation of Human Protein Variants and Their Frequency in the General Population
Dobrin Nedelkov, David A. Phillips, Kemmons A. Tubbs, and Randall W. Nelson
Mol Cell Proteomics (2007) 6(7): 1183-1187
Comparison of the nuclear proteomes of mammary epithelial cells at different stages of functional differentiation
Sylvane Desrivières, Karsten Kuhn, Jörg Müller, Melanie Gläser, Nahomi Castro-Palomino Laria, Jutta Korder, Michael Sonnentag, Thomas Neumann, Josef Schwarz, Jürgen Schäfer, Christian Hamon, Bernd Groner, Thorsten Prinz
PROTEOMICS (2007) 7(12): 2019-2037
The syntaxin SYP132 contributes to plant resistance against bacteria and secretion of pathogenesis-related protein 1
Kalde M, Nuhse TS, Findlay K, Peck SC.
Proc Natl Acad Sci U S A (2007) 104(28): 11850-5
Proteomic identification of technologically modified proteins in malt by combination of protein fractionation using convective interaction media and matrix-assisted laser desorption/ionization time-of-flight mass spectrometry
Bobalova J, Chmelik J.
J Chromatogr A Early Edition: published 9-Jun-2007
Proteomic analysis of de-etiolated rice seedlings upon exposure to light
Pingfang Yang, Hui Chen, Yu Liang, Shihua Shen
PROTEOMICS (2007) 7(14): 2459-2468
Differential intestinal mucosal protein expression in hypercholesterolemic mice fed a phytosterol-enriched diet
Laura Calpe-Berdiel, Joan Carles Escolà-Gil, Josep Julve, Edgar Zapico-Muñiz, Francesc Canals, Francisco Blanco-Vaca
PROTEOMICS (2007) 7(15): 2659-2666
Interaction of HapX with the CCAAT-binding complex-a novel mechanism of gene regulation by iron
Hortschansky P, Eisendle M, Al-Abdallah Q, Schmidt AD, Bergmann S, Thon M, Kniemeyer O, Abt B, Seeber B, Werner ER, Kato M, Brakhage AA, Haas H.
EMBO J (2007) 26(13): 3157-68
A proteomic view of Candida albicans yeast cell metabolism in exponential and stationary growth phases
Kusch H, Engelmann S, Bode R, Albrecht D, Morschhauser J, Hecker M.
Int J Med Microbiol Early Edition: published 22-Jun-2007
Virus-derived Platforms for Visualizing Protein Associations inside Cells
Cathy L. Miller, Michelle M. Arnold, Teresa J. Broering, Catherine Eichwald, Jonghwa Kim, Jason B. Dinoso, and Max L. Nibert
Mol Cell Proteomics (2007) 6(6): 1027-1038
Neuropeptides of the islets of Langerhans: A peptidomics study
Boonen K, Baggerman G, Hertog WD, Husson SJ, Overbergh L, Mathieu C, Schoofs L.
Gen Comp Endocrinol (2007) 152(2-3): 231-41
Global cooling: Cold acclimation and the expression of soluble proteins in carp skeletal muscle
Lynn McLean, Iain S. Young, Mary K. Doherty, Duncan H. L. Robertson, Andrew R. Cossins, Andrew Y. Gracey, Robert J. Beynon, Phillip D. Whitfield
PROTEOMICS (2007) 7(15): 2667-2681
Proteomic analysis of plasma membrane lipid rafts of HL-60 cells
Mitsuaki Yanagida, Hitoshi Nakayama, Fumiko Yoshizaki, Tsutomu Fujimura, Kenji Takamori, Hideoki Ogawa, Kazuhisa Iwabuchi
PROTEOMICS (2007) 7(14): 2398-2409
Comparative proteomics reveal characteristics of life-history transitions in a social insect
Wolschin F, Amdam GV
Proteome Science (2007) 5: 10
Metabolic Protein Patterns and Monascorubrin Production Revealed through Proteomic Approach for Monascus pilosus Treated with Cycloheximide
Lin WY, Chang JY, Tsai PC, Pan TM.
J Agric Food Chem (2007) 55(14): 5559-68
A proteomic study of sodium/d-glucose cotransporter 1 (SGLT1): Topology of loop 13 and coverage of other functionally important domains
Kumar A, Tyagi NK, Arevalo E, Miller KW, Kinne RK.
Biochim Biophys Acta Early Edition: published 29-May-2007
Simulated hyperglycemia in rat cardiomyocytes: A proteomics approach for improved analysis of cellular alterations
Mohamad Warda, Hyoung Kyu Kim, Nari Kim, Jae Boum Youm, Sung Hyun Kang, Won Sun Park, Tran Min Khoa, Young Hwan Kim, Jin Han
PROTEOMICS (2007) 7(15): 2570-2590
Proteome analysis of the rat hepatic stellate cells under high concentrations of glucose
Pan-Kyeom Kim, Mi-Ryung Kim, Hyun-Jung Kim, Hyun-Syuk Yoo, Ji-Soo Kim, Eun-Hee Cho, Chan-Wha Kim
PROTEOMICS (2007) 7(13): 2184-2188
Proteomics Analysis of Human Coronary Atherosclerotic Plaque: A Feasibility Study of Direct Tissue Proteomics by Liquid Chromatography and Tandem Mass Spectrometry
Carolina Bagnato, Jaykumar Thumar, Viveka Mayya, Sun-Il Hwang, Henry Zebroski, Kevin P. Claffey, Christian Haudenschild, Jimmy K. Eng, Deborah H. Lundgren, and David K. Han
Mol Cell Proteomics (2007) 6(6): 1088-1102
Endometrial Carcinoma Biomarker Discovery and Verification Using Differentially Tagged Clinical Samples with Multidimensional Liquid Chromatography and Tandem Mass Spectrometry
Leroi V. DeSouza, Jorg Grigull, Shaun Ghanny, Valerie Dube, Alexander D. Romaschin, Terence J. Colgan, and K. W. Michael Siu
Mol Cell Proteomics (2007) 6(7): 1170-1182
Neuropeptides of the islets of Langerhans: A peptidomics study
Boonen K, Baggerman G, Hertog WD, Husson SJ, Overbergh L, Mathieu C, Schoofs L.
Gen Comp Endocrinol (2007) 152(2-3): 231-41
Identification of Novel Biomarkers in Pediatric Primitive Neuroectodermal Tumors and Ependymomas by Proteome-Wide Analysis
de Bont JM, den Boer ML, Kros JM, Passier MM, Reddingius RE, Smitt PA, Luider TM, Pieters R.
J Neuropathol Exp Neurol (2007) 66(6): 505-516
Proteomic analysis of peripheral leukocytes in Alzheimer's disease patients treated with divalproex sodium
Mhyre TR, Loy R, Tariot PN, Profenno LA, Maguire-Zeiss KA, Zhang D, Coleman PD, Federoff HJ.
Neurobiol Aging Early Edition: published 21-May-2007
Contribution of laser microdissection-based technology to proteomic analysis in hepatocellular carcinoma developing on cirrhosis
Alexandre Dos Santos, Valérie Thiers, Sokhavuth Sar, Nicolas Derian, Noura Bensalem, Funda Yilmaz, Marie-Pierre Bralet, Béatrice Ducot, Christian Bréchot, France Demaugre
PROTEOMICS - Clinical Applications (2007) 1(6): 545-554
Identification of differentially expressed proteins in papillary thyroid carcinomas with V600E mutation of BRAF
Efisio Puxeddu, Federica Susta, Pier Luigi Orvietani, Davide Chiasserini, Flavia Barbi, Sonia Moretti, Antonio Cavaliere, Fausto Santeusanio, Nicola Avenia, Luciano Binaglia
PROTEOMICS - Clinical Applications (2007) 1(7): 672-680
Proteins involved in neuronal differentiation of neuroblastoma cell line N1E-115
Ji-eun Oh, Angelika Freilinger, Ellen Gelpi, Arnold Pollak, Markus Hengstschläger, Gert Lubec
ELECTROPHORESIS (2007) 28(12): 2009-2017
Proteomics Analysis of HearNPV Identified Two New ODV associated Proteins, HA44 and HA100
Deng F, Wang R, Fang M, Jiang Y, Xu X, Wang H, Chen X, Arif BM, Guo L, Wang H, Hu Z.
J Virol Early Edition: published 20-Jun-2007
Proteomic profiling reveals that rabies virus infection results in differential expression of host proteins involved in ion homeostasis and synaptic physiology in the central nervous system
Dhingra V, Li X, Liu Y, Fu ZF.
J Neurovirol (2007) 13(2): 107-17
Proteomic analysis of the inflamed intestinal mucosa reveals distinctive immune response profiles in Crohn's disease and ulcerative colitis
Berndt U, Bartsch S, Philipsen L, Danese S, Wiedenmann B, Dignass AU, Hammerle M, Sturm A.
J Immunol (2007) 179(1): 295-304
Neuropeptidomics: expanding proteomics downwards
Svensson M, Skold K, Nilsson A, Falth M, Svenningsson P, Andren PE.
Biochem Soc Trans (2007) 35(Pt 3): 588-93
Alteration of nuclear matrix-intermediate filament system and differential expression of nuclear matrix proteins during human hepatocarcinoma cell differentiation
Tang J, Niu JW, Xu DH, Li ZX, Li QF, Chen JA.
World J Gastroenterol (2007) 13(20): 2791-7
Laser capture microdissection in comparative proteomic analysis of hepatocellular carcinoma
Wang HY.
Methods Cell Biol (2007) 82: 689-707
Global proteomic analysis distinguishes biologic differences in head and neck squamous carcinoma
Sudha R, Kawachi N, Du P, Nieves E, Belbin TJ, Negassa A, Angeletti RH, Prystowsky MB.
Lab Invest (2007) 87(8): 755-66
Comparison of lung proteome profiles in two rodent models of pulmonary arterial hypertension
Sven Laudi, Wolfgang Steudel, Karen Jonscher, Wenzel Schöning, Björn Schniedewind, Udo Kaisers, Uwe Christians, Saskia Trump
PROTEOMICS (2007) 7(14): 2469-2478
Proteomics of S-(1, 2-dichlorovinyl)-L-cysteine-induced acute renal failure and autoprotection in mice
Korrapati MC, Chilakapati J, Witzmann FA, Chundury R, Lock EA, Mehendale HM.
Am J Physiol Renal Physiol Early Edition: published 20-Jun-2007
Proteomics of Alzheimer's disease: understanding mechanisms and seeking biomarkers
Simon Lovestone, Andreas Guntert, Abdul Hye, Steven Lynham, Madhav Thambisetty, Malcolm Ward
Expert Review of Proteomics (2007) 4(2): 227-238
Proteome analysis of human androgen-independent prostate cancer cell lines: Variable metastatic potentials correlated with vimentin expression
Mingfu Wu, Xiangyang Bai, Gang Xu, Juncheng Wei, Tao Zhu, Yongtao Zhang, Qiong Li, Ping Liu, Anping Song, Liangpin Zhao, Chen Gang, Zhiqiang Han, Shixuan Wang, Jianfeng Zhou, Yunpin Lu, Ding Ma
PROTEOMICS (2007) 7(12): 1973-1983
Identification of mitochondrial F(0)F(1)-ATP synthase involved in liver metastasis of colorectal cancer
Chang HJ, Lee MR, Hong SH, Yoo BC, Shin YK, Jeong JY, Lim SB, Choi HS, Jeong SY, Park JG.
Cancer Sci (2007) 98(8): 1184-91
Time dependent changes in cytoplasmic proteins of the right ventricle during prolonged pressure overload
Faber MJ, Dalinghaus M, Lankhuizen IM, Bezstarosti K, Verhoeven AJ, Duncker DJ, Helbing WA, Lamers JM.
J Mol Cell Cardiol (2007) 43(2): 197-209
Proteomic biomarker discovery for the monogenic disease cystic fibrosis
Deborah Penque
Expert Review of Proteomics (2007) 4(2): 199-209
Proteomic Study on X-Irradiation-Responsive Proteins and Aging: Search for Responsible Proteins for Radiation Adaptive Response
Miura Y, Kano M, Yamada M, Nishine T, Urano S, Suzuki S, Endo T, Toda T.
J Biochem (Tokyo) Early Edition: published 23-May-2007
Evidence for the Mode of Action of the Highly Cytotoxic Streptomyces Polyketide Kendomycin
Elnakady YA, Rohde M, Sasse F, Backes C, Keller A, Lenhof HP, Weissman KJ, Muller R.
Chembiochem (2007) 8(11): 1261-1272
The Role of Genomics and Proteomics: Technologies in Studying Non-alcoholic Fatty Liver Disease
Baranova A, Liotta L, Petricoin E, Younossi ZM.
Clin Liver Dis (2007) 11(1): 209-220
Variability of in situ proteomic profiling and implications for study design in colorectal tumors
Li JQ, Xu BJ, Shakhtour B, Deane N, Merchant N, Heslin MJ, Washington K, Coffey RJ, Beauchamp RD, Shyr Y, Billheimer D.
Int J Oncol (2007) 31(1): 103-11
Detection of colorectal adenoma and cancer based on transthyretin and C3a-desArg serum levels
Anne-Kristin Fentz, Monika Spörl, Jörg Spangenberg, Heinz Joachim List, Carsten Zornig, Arnulf Dörner, Peter Layer, Hartmut Juhl, Kerstin A. David
PROTEOMICS - Clinical Applications (2007) 1(6): 536-544
Cerebellar Vermis Proteome of Chronic Alcoholic Individuals
Alexander-Kaufman K, Harper C, Wilce P, Matsumoto I.
Alcohol Clin Exp Res (2007) 31(8): 1286-96
A proteomic analysis of allograft rejection in rats after liver transplantation
Zhang C, Zhu F, Wei J, Zheng S, Li L.
Sci China C Life Sci (2007) 50(3): 312-9
Comparative proteomic analysis of human osteosarcoma and SV40-immortalized normal osteoblastic cell lines
Guo QC, Shen JN, Jin S, Wang J, Huang G, Zhang LJ, Huang G, Yin JQ, Zou CY, Li MT.
Acta Pharmacol Sin (2007) 28(6): 850-8
Proteomics analysis of the expression of neurogranin in murine neuroblastoma (Neuro-2a) cells reveals its involvement for cell differentiation
Han NL, Wen J, Lin Q, Tan PL, Liou YC, Sheu FS.
Int J Biol Sci (2007) 3(5): 263-73
Viral proteomics
Maxwell KL, Frappier L.
Microbiol Mol Biol Rev (2007) 71(2): 398-411
Proteomic analysis to dissect mitoxantrone resistance-associated proteins in a squamous lung carcinoma
Murphy L, Clynes M, Keenan J.
Anticancer Res (2007) 27(3A): 1277-84
Quantification of heart fatty acid binding protein as a biomarker for drug-induced cardiac and musculoskeletal necroses
Eugene Y. Zhen, Michael J. Berna, Zhaoyan Jin, Michael L. Pritt, David E. Watson, Bradley L. Ackermann, John E. Hale
PROTEOMICS - Clinical Applications (2007) 1(7): 661-671
Proteomic expression profiling of breast cancer
Neubauer H, Fehm T, Schutz C, Speer R, Solomayer E, Schrattenholz A, Cahill MA, Kurek R.
Recent Results Cancer Res (2007) 176: 89-120
Discovery of distinct protein profiles for polycystic ovary syndrome with and without insulin resistance by surface-enhanced laser adsorption/ionization time of flight mass spectrometry
Zhao S, Qiao J, Li M, Zhang X, Yu J, Li R.
Fertil Steril (2007) 88(1): 145-51
Proteomic analysis of striatal proteins in the rat model of l-DOPA-induced dyskinesia
Valastro B, Dekundy A, Krogh M, Lundblad M, James P, Danysz W, Quack G, Cenci MA.
J Neurochem Early Edition: published 26-May-2007
Proteomic analysis of human ovaries from normal and polycystic ovarian syndrome
Ma X, Fan L, Meng Y, Hou Z, Mao YD, Wang W, Ding W, Liu JY.
Mol Hum Reprod (2007) 13(8): 527-35
Proteomic analysis of cardiomyocytes differentiation in mouse embryonic carcinoma P19CL6 cells
Wen J, Xia Q, Lu C, Yin L, Hu J, Gong Y, Yin B, Monzen K, Yuan J, Qiang B, Zhang X, Peng X.
J Cell Biochem Early Edition: published 22-May-2007
Toward the proteomic identification of biomarkers for the prediction of HBV related hepatocellular carcinoma
He QY, Zhu R, Lei T, Ng MY, Luk JM, Sham P, Lau GK, Chiu JF.
J Cell Biochem Early Edition: published 7-Jun-2007
Proteomics of ascending aortic aneurysm with bicuspid or tricuspid aortic valve
Matt P, von Orelli A, Bernet F, Grussenmeyer T, Lefkovits I, Zerkowski HR.
Asian Cardiovasc Thorac Ann (2007) 15(3): 185-90
The glomerular transcriptome and proteome
Betsholtz C, He L, Takemoto M, Norlin J, Sun Y, Patrakka J, Tryggvason K.
Nephron Exp Nephrol (2007) 106(2): e32-6
Proteomic Analysis Defines Altered Cellular Redox Pathways and Advanced Glycation End Product (AGE) Metabolism in Glomeruli of db/db Diabetic Mice
Barati MT, Merchant ML, Kain AB, Jevans AW, McLeish KR, Klein JB.
Am J Physiol Renal Physiol Early Edition: published 3-Jul-2007
Proteomics in atherothrombosis: a future perspective
Jose Luis Martin-Ventura, Luis Miguel Blanco-Colio, Jose Tunon, Carmen Gomez-Guerrero, Jean-Baptiste Michel, Olivier Meilhac, Jesus Egido
Expert Review of Proteomics (2007) 4(2): 249-260
Comparative proteomic study of acute pulmonary embolism in a rat model
Sheng-qing Li, Hao-wen Qi, Chang-gui Wu, Xiao-jun Zhang, Shu-guang Yang, Xin Zhao, Zhe Wu, Yu Wang, Hai-ping Que, Shao-jun Liu
PROTEOMICS (2007) 7(13): 2287-2299
Proteomic Investigation of Human Burn Wounds by 2D-Difference Gel Electrophoresis and Mass Spectrometry
Pollins AC, Friedman DB, Nanney LB.
J Surg Res Early Edition: published 28-Jun-2007
Identification of nasopharyngeal carcinoma antigens that induce humoral immune response by proteomic analysis
Zhi-Qiang Xiao, Ying Chen, Bin Yi, Mao-Yu Li, Peng-Fei Zhang, Hong Yi, Chao-Jun Duan, Cui Li, Jian-Ling Li, Cen-E Tang, Fang Yang, Ge-Qin Zhu, Zhu-Chu Chen
PROTEOMICS - Clinical Applications (2007) 1(7): 688-698
Differential protein expression profiles in the hippocampus of human alcoholics
Matsuda-Matsumoto H, Iwazaki T, Kashem MA, Harper C, Matsumoto I.
Neurochem Int Early Edition: published 8-Apr-2007
Proteomic analysis of liver cancer cells treated with suberonylanilide hydroxamic acid
Tong A, Zhang H, Li Z, Gou L, Wang Z, Wei H, Tang M, Liang S, Chen L, Huang C, Wei Y.
Cancer Chemother Pharmacol Early Edition: published 26-Jun-2007
A prospective analysis of imatinib-induced c-kit modulation in ovarian cancer: a phase II clinical study with proteomic profiling
Posadas EM, Kwitkowski V, Kotz HL, Espina V, Minasian L, Tchabo N, Premkumar A, Hussain MM, Chang R, Steinberg SM, Kohn EC.
Cancer (2007) 110(2): 309-17
The birth and infancy of proteomic analysis in osteoarthritis research
De Ceuninck F.
Curr Opin Mol Ther (2007) 9(3): 263-9
Serum Proteomic Analysis Identifies a Highly Sensitive and Specific Discriminatory Pattern in Stage 1 Breast Cancer
Belluco C, Petricoin EF, Mammano E, Facchiano F, Ross-Rucker S, Nitti D, Maggio CD, Liu C, Lise M, Liotta LA, Whiteley G.
Ann Surg Oncol Early Edition: published 27-Jun-2007
Proteomic analysis of gene expression following hypoxia and reoxygenation reveals proteins involved in the recovery from endoplasmic reticulum and oxidative stress>
Magagnin MG, Sergeant K, van den Beucken T, Rouschop KM, Jutten B, Seigneuric R, Lambin P, Devreese B, Koritzinsky M, Wouters BG.
Radiother Oncol (2007) 83(3): 340-5
Serum proteomic-based analysis of pancreatic carcinoma for the identification of potential cancer biomarkers
Sun ZL, Zhu Y, Wang FQ, Chen R, Peng T, Fan ZN, Xu ZK, Miao Y.
Biochim Biophys Acta (2007) 1774(6): 764-71
Proteomics analysis of the Alzheimer's disease hippocampal proteome
Sultana R, Boyd-Kimball D, Cai J, Pierce WM, Klein JB, Merchant M, Butterfield DA.
J Alzheimers Dis (2007) 11(2): 153-64
Proteomic approach to aging research
Victor S Sharov, Christian Schoneich
Expert Review of Proteomics (2007) 4(2): 309-321
Topo-Proteomic in situ Analysis of Psoriatic Plaque under Efalizumab Treatment
Bonnekoh B, Pommer AJ, Bockelmann R, Hofmeister H, Philipsen L, Gollnick H.
Skin Pharmacol Physiol (2007) 20(5): 237-252
Diurnal Protein Expression in Blood Revealed by High Throughput Mass Spectrometry Proteomics, and Implications for Translational Medicine and Body-Time-Of-Day (BTOD)
Martino TA, Tata N, Bjarnason GA, Straume M, Sole MJ.
Am J Physiol Regul Integr Comp Physiol Early Edition: published 6-Jun-2007
Novel technologies for cancer biomarker discovery: Humoral proteomics
Shoshan SH, Admon A.
Cancer Biomark (2007) 3(3): 141-52
Application of proteomic technologies to discover and identify biomarkers for excessive alcohol consumption: A review
Nomura F, Tomonaga T, Sogawa K, Wu D, Ohashi T.
J Chromatogr B (2007) 855(1): 35-41
Proteome map of normal rat retina and comparison with the proteome of diabetic rat retina: New insight in the pathogenesis of diabetic retinopathy
Godfrey (Goff) J. Quin, Alice C. L. Len, Frank A. Billson, Mark C. Gillies
PROTEOMICS (2007) 7(15): 2636-2650
Detection of venous thromboembolism by proteomic serum biomarkers
Ganesh SK, Sharma Y, Dayhoff J, Fales HM, Van Eyk J, Kickler TS, Billings EM, Nabel EG.
PLoS ONE (2007) 2: e544.
Proteomic Identification of Oxidized Mitochondrial Proteins following Experimental Traumatic Brain Injury
Opii WO, Nukala VN, Sultana R, Pandya JD, Day KM, Merchant ML, Klein JB, Sullivan PG, Butterfield DA.
J Neurotrauma (2007) 24(5): 772-89
Large-scale protein identification of human urine proteome by multi-dimensional LC and MS/MS
Yi-Ting Chen, Chao-Yun Tsao, Jen-Ming Li, Chih-Yen Tsai, Su-Feng Chiu, Tzu-Ling Tseng
PROTEOMICS - Clinical Applications (2007) 1(6): 577-587
Defining primary and secondary progenitor disorders in the brain: proteomic approaches for analysis of neural progenitor cells
Paulson L, Eriksson PS, Curtis MA.
Curr Pharm Biotechnol (2007) 8(3): 117-25
Both Estrogen Receptor Subtypes, {alpha} and {beta}, Attenuate Cardiovascular Remodeling in Aldosterone Salt-Treated Rats
Arias-Loza PA, Hu K, Dienesch C, Mehlich AM, Konig S, Jazbutyte V, Neyses L, Hegele-Hartung C, Fritzemeier KH, Pelzer T.
Hypertension (2007) 50(2): 432-8
Proteomic approaches for serum biomarker discovery in cancer
Maurya P, Meleady P, Dowling P, Clynes M.
Anticancer Res (2007) 27(3A): 1247-55
Comparative Proteomics Analysis of Barrett Metaplasia and Esophageal Adenocarcinoma Using Two-dimensional Liquid Mass Mapping
Jia Zhao, Andrew C. Chang, Chen Li, Kerby A. Shedden, Dafydd G. Thomas, David E. Misek, Arun Prasad Manoharan, Thomas J. Giordano, David G. Beer, and David M. Lubman
Mol Cell Proteomics (2007) 6(6): 987-999
Proteomic Analysis of Peripheral T-lymphocytes in Patients with Asthma
Jeong HC, Lee SY, Lee EJ, Jung KH, Kang EH, Lee SY, Kim JH, Park EK, Lee SH, Uhm CS, Cho Y, Shin C, Shim JJ, Kim HK, In KH, Kang KH, Yoo SH.
Chest Early Edition: published 5-Jun-2007
Susceptibility of Human Pathogenic Bacteria to Antimicrobial Peptides from Sesame Kernels
Costa FT, Neto SM, Bloch C Jr, Franco OL.
Curr Microbiol (2007) 55(2): 162-6
Investigation of protein expression in magnetic field-treated human glioma cells
Kanitz MH, Witzmann FA, Lotz WG, Conover D, Savage RE Jr.
Bioelectromagnetics Early Edition: published 14-Jun-2007
Genomics and proteomics in multiple myeloma and Waldenstrom macroglobulinemia
Henry T, Fonseca R.
Curr Opin Hematol (2007) 14(4): 369-74
The use of proteomics to study wound healing: a preliminary study for forensic estimation of wound age
Tarran SL, Craft GE, Valova V, Robinson PJ, Thomas G, Markham R, Langlois NE, Vanezis P.
Med Sci Law (2007) 47(2): 134-40
Candidate antigens specifically detected by cerebrospinal fluid-IgG in oligoclonal IgG bands-positive multiple sclerosis patients
Masashi Nakamura, Atsuo Kuramasu, Ichiro Nakashima, Kazuo Fujihara, Yasuto Itoyama
PROTEOMICS - Clinical Applications (2007) 1(7): 681-687
Proteomics of blood-based therapeutics: a promising tool for quality assurance in transfusion medicine
Thiele T, Steil L, Volker U, Greinacher A.
BioDrugs (2007) 21(3): 179-93
Fibrinogen gamma-A chain precursor in cerebrospinal fluid: a candidate biomarker for Alzheimer's disease
Lee JW, Namkoong H, Kim HK, Kim S, Hwang DW, Na HR, Ha SA, Kim JR, Kim JW.
BMC Neurol (2007) 7(1): 14
Proteomics in uveal melanoma research: opportunities and challenges in biomarker discovery
Maria Pardo, Raymond A Dwek, Nicole Zitzmann
Expert Review of Proteomics (2007) 4(2): 273-286
Proteomic study of salivary peptides and proteins in patients with Sjogren's syndrome before and after pilocarpine treatment
Peluso G, De Santis M, Inzitari R, Fanali C, Cabras T, Messana I, Castagnola M, Ferraccioli GF.
Arthritis Rheum (2007) 56(7): 2216-2222
Serum biomarkers for Alzheimer's disease: Proteomic discovery
German DC, Gurnani P, Nandi A, Garner HR, Fisher W, Diaz-Arrastia R, O'suilleabhain P, Rosenblatt KP.
Biomed Pharmacother Early Edition: published 18-Jun-2007
Global proteome profiling of NPM/ALK-positive anaplastic large cell lymphoma
Sjostrom C, Seiler C, Crockett DK, Tripp SR, Elenitoba Johnson KS, Lim MS.
Exp Hematol Early Edition: published 6-Jun-2007
Analysis of Ras-induced oncogenic transformation of NIH-3T3 cells using differential-display 2-DE proteomics
Hong Ji, Robert L. Moritz, Yu-Sam Kim, Hong-Jian Zhu, Richard J. Simpson
ELECTROPHORESIS (2007) 28(12): 1997-2008
Proteomics analyses of ovarian caner using genetically defined human ovarian cancer models
Cheng X, Young TW, Mei FC.
Front Biosci (2007) 12: 5166-5174.
Diagnostic biomarkers differentiating metastatic melanoma patients from healthy controls identified by an integrated MALDI-TOF mass spectrometry/bioinformatic approach
Balwir Matharoo-Ball, Lucy Ratcliffe, Lee Lancashire, Selma Ugurel, Amanda K. Miles, Daniel J. Weston, Robert Rees, Dirk Schadendorf, Graham Ball, Colin S. Creaser
PROTEOMICS - Clinical Applications (2007) 1(6): 605-620
Alterations in the bovine bronchoalveolar lavage proteome induced by dexamethasone
Mitchell GB, Clark ME, Caswell JL.
Vet Immunol Immunopathol (2007) 118(3-4): 283-93
Identification of differentially expressed proteins in striatum of maneb-and paraquat-induced Parkinson's disease phenotype in mouse
Patel S, Sinha A, Singh MP.
Neurotoxicol Teratol Early Edition: published 27-Apr-2007
Subacute proteome changes following traumatic injury of the developing brain: Implications for a dysregulation of neuronal migration and neurite arborization
Angela M. Kaindl, Claus Zabel, Vanya Stefovska, Ron Lehnert, Marco Sifringer, Joachim Klose, Chrysanthy Ikonomidou
PROTEOMICS - Clinical Applications (2007) 1(7): 640-649
Investigation of laser-microdissected inclusion bodies
Hachiya NS, Kaneko K.
Methods Cell Biol (2007) 82: 355-75
-Plasma analysis of rheumatoid arthritis by SELDI-
Naishiro Y, Suzuki C, Kimura M, Yamamoto M, Takahashi H, Sohma H, Hori T, Shinomura Y, Kokai Y, Imai K.
Nihon Rinsho Meneki Gakkai Kaishi (2007) 30(3): 145-50
Clusterin Expression in Normal Mucosa and Colorectal Cancer
Claus Lindbjerg Andersen, Troels Schepeler, Kasper Thorsen, Karin Birkenkamp-Demtroder, Francisco Mansilla, Lauri A. Aaltonen, Soren Laurberg, and Torben Falck Orntoft
Mol Cell Proteomics (2007) 6(6): 1039-1048
Differential expression of AQP1 in microdomain-enriched membranes of renal cell carcinoma
Davide Ticozzi-Valerio, Francesca Raimondo, Marina Pitto, Francesco Rocco, Silvano Bosari, Roberto Perego, Cecilia Sarto, Andrea Di Fonzo, Niccolò Bosso, Paolo Mocarelli, Marzia Galli-Kienle, Fulvio Magni
PROTEOMICS - Clinical Applications (2007) 1(6): 588-597
Application of proteomic methods for identification of sperm immunogenic antigens
Domagala A, Pulido S, Kurpisz M, Herr JC.
Mol Hum Reprod (2007) 13(7): 437-44
Determination of metastasis-associated proteins in non-small cell lung cancer by comparative proteomic analysis
Tian T, Hao J, Xu A, Hao J, Luo C, Liu C, Huang L, Xiao X, He D.
Cancer Sci (2007) 98(8): 1265-1274
Phosphoproteomics identified Endofin, DCBLD2, and KIAA0582 as novel tyrosine phosphorylation targets of EGF signaling and Iressa in human cancer cells
Yunhao Chen, Teck-Yew Low, Lee-Yee Choong, Rajarshi Sankar Ray, Yee-Ling Tan, Weiyi Toy, Qingsong Lin, Boon Keong Ang, Chee Hong Wong, Simin Lim, Bin Li, Choy-Leong Hew, Newman Siu-Kwan Sze, Brian J. Druker, Yoon-Pin Lim
PROTEOMICS (2007) 7(14): 2384-2397
Cytogenetic characterisation and proteomic profiling of the Imatinib-resistant cell line KCL22-R
Rosenhahn J, Weise A, Michel S, Hennig K, Hartmann I, Schiefner J, Schubert K, Liehr T, Von Eggeling F, Loncarevic IF.
Int J Oncol (2007) 31(1): 121-8
Technology insight: the application of proteomics in gastrointestinal disease
Din S, Lennon AM, Arnott ID, Hupp T, Satsangi J.
Nat Clin Pract Gastroenterol Hepatol (2007) 4(7): 372-85
Fast and simultaneous determination of darunavir and eleven other antiretroviral drugs for therapeutic drug monitoring: method development and validation for the determination of all currently approved HIV protease inhibitors and non-nucleoside reverse transcriptase inhibitors in human plasma by liquid chromatography coupled with electrospray ionization tandem mass spectrometry
Rob ter Heine, Carolien G. Alderden-Los, Hilde Rosing, Michel J. X. Hillebrand, Eric C. M. van Gorp, Alwin D. R. Huitema, Jos H. Beijnen
Rapid Communications in Mass Spectrometry (2007) 21(15): 2505-2514
Proteome analysis of the dorsolateral prefrontal region from healthy individuals
Alexander-Kaufman K, Dedova I, Harper C, Matsumoto I.
Neurochem Int Early Edition: published 3-May-2007
Clinical applications of expression profiling and proteomics in prostate cancer
Masters JR.
Anticancer Res (2007) 27(3A): 1273-6
Identification of biomarkers associated with the development of hepatocellular carcinoma in CuZn superoxide dismutase deficient mice
Sailaja Elchuri, Mohammed Naeemuddin, Orr Sharpe, William H. Robinson, Ting-Ting Huang
PROTEOMICS (2007) 7(12): 2121-2129
Expression of high-abundance proteins in sera of patients with endometrial and cervical cancers: Analysis using 2-DE with silver staining and lectin detection methods
Puteri S. Abdul-Rahman, Boon-Kiong Lim, Onn H. Hashim
ELECTROPHORESIS (2007) 28(12): 1989-1996
The application of ultra-performance liquid chromatography/tandem mass spectrometry to the detection and quantitation of apolipoproteins in human serum
Richard G. Kay, Barbara Gregory, Philip B. Grace, Steve Pleasance
Rapid Communications in Mass Spectrometry (2007) 21(16): 2585-2593
Characterization of proteomic changes in cardiac mitochondria in streptozotocin-diabetic rats using iTRAQTM isobaric tags
Mia Jüllig, Anthony J. Hickey, Martin J. Middleditch, David J. Crossman, Stanley C. Lee, Garth J. S. Cooper
PROTEOMICS - Clinical Applications (2007) 1(6): 565-576
Effects of Salviae Mitiorrhizae and Cortex Moutan extract on the rat heart after myocardial infarction: A proteomic study
Wang Y, Liu L, Hu C, Cheng Y.
Biochem Pharmacol (2007) 74(3): 415-24
Proteomic technologies in the study of kinases: Novel tools for the investigation of PKC in the heart
Agnetti G, Kane LA, Guarnieri C, Caldarera CM, Van Eyk JE.
Pharmacol Res (2007) 55(6): 511-22
Proteomic study of the establishment of boar epididymal cell cultures
Bassols J, Bonet S, Belghazi M, Dacheux F, Dacheux JL.
Theriogenology (2007) 68(1): 76-86
A sub-proteome of Arabidopsis thaliana mature stems trapped on Concanavalin A is enriched in cell wall glycoside hydrolases
Minic Z, Jamet E, Negroni L, Arsene der Garabedian P, Zivy M, Jouanin L.
J Exp Bot Early Edition: published 26-May-2007
Mapping the Human Plasma Proteome by SCX-LC-IMS-MS
Liu X, Valentine SJ, Plasencia MD, Trimpin S, Naylor S, Clemmer DE.
J Am Soc Mass Spectrom (2007) 18(7): 1249-64
Proteomic analysis of jasmonic Acid-regulated proteins in rice leaf blades
Mahmood T, Kakishima M, Komatsu S.
Protein Pept Lett (2007) 14(4): 311-9
Lung alveolar proteomics of bronchoalveolar lavage from a pulmonary alveolar proteinosis patient using high-resolution FTICR mass spectrometry
Bai Y, Galetskiy D, Damoc E, Ripper J, Woischnik M, Griese M, Liu Z, Liu S, Przybylski M.
Anal Bioanal Chem Early Edition: published 20-Jun-2007
Recent advances in neuroproteomics
Andrade EC, Krueger DD, Nairn AC.
Curr Opin Mol Ther (2007) 9(3): 270-81
Rat liver peroxisomes after fibrate treatment: A survey using quantitative mass spectrometry
Islinger M, Luers GH, Li KW, Loos M, Volkl A.
J Biol Chem Early Edition: published 22-May-2007
Proteomic analysis of bronchoalveolar lavage fluid: effect of acute exposure to diesel exhaust particles in rats
Lewis JA, Rao KM, Castranova V, Vallyathan V, Dennis WE, Knechtges PL.
Environ Health Perspect (2007) 115(5): 756-63
Variation in the monocyte proteome
Hryniewicz-Jankowska A, Choudhary PK, Goodman SR.
Exp Biol Med (Maywood) (2007) 232(7): 967-76
Proteomic approach to study the effects of various oxidatively modified low-density lipoprotein on regulation of protein expression in human umbilical vein endothelial cell
Chen CY, Lee CM, Hsu HC, Yang CY, Chow LP, Lee YT.
Life Sci (2007) 80(26): 2469-80
Identification of proteins from feeder conditioned medium that support human embryonic stem cells
Chin AC, Fong WJ, Goh LT, Philp R, Oh SK, Choo AB.
J Biotechnol (2007) 130(3): 320-8
Comparative analysis of inter-individual variations in the seminal plasma proteome of fertile men with the identification of potential markers for azoospermia in infertile patients
Yamakawa K, Yoshida K, Nishikawa H, Kato T, Iwamoto T.
J Androl Early Edition: published 6-Jun-2007
Comparative profiling of human saliva by intact protein LC/ESI-TOF mass spectrometry
Millea KM, Krull IS, Chakraborty AB, Gebler JC, Berger SJ.
Biochim Biophys Acta (2007) 1774(7): 897-906
Proteomic analysis of Chelidonium majus milky sap using two-dimensional gel electrophoresis and tandem mass spectrometry
Nawrot R, Kalinowski A, Gozdzicka-Jozefiak A.
Phytochemistry (2007) 68(12): 1612-22
Proteomic identification of differently expressed proteins responsible for osteoblast differentiation from human mesenchymal stem cells
Zhang AX, Yu WH, Ma BF, Yu XB, Mao FF, Liu W, Zhang JQ, Zhang XM, Li SN, Li MT, Lahn BT, Xiang AP.
Mol Cell Biochem Early Edition: published 26-May-2007
Proteomic analysis of antibody response in a case of laboratory-acquired infection with Francisella tularensis subsp. tularensis
Janovska S, Pavkova I, Reichelova M, Hubaleka M, Stulik J, Macela A.
Folia Microbiol (Praha) (2007) 52(2): 194-8
Bacillus anthracis secretome time course under host-simulated conditions and identification of immunogenic proteins
Walz A, Mujer C, Connolly J, Alefantis T, Chafin R, Dake C, Whittington J, Kumar S, Khan A, DelVecchio V
Proteome Science (2007) 5: 11
Duodenal Ulcer-related Antigens from Helicobacter pylori: Immunoproteome and Protein Microarray Approaches
Yu-Fen Lin, Chun-Yi Chen, Mong-Hsun Tsai, Ming-Shiang Wu, Yu-Chun Wang, Eric Y. Chuang, Jaw-Town Lin, Pan-Chyr Yang, and Lu-Ping Chow
Mol Cell Proteomics (2007) 6(6): 1018-1026
S-cysteinylation is a general mechanism for thiol protection of Bacillus subtilis proteins after oxidative stress
Hochgrafe F, Mostertz J, Pother DC, Becher D, Helmann JD, Hecker M.
J Biol Chem Early Edition: published 4-Jul-2007
A proteome analysis of Corynebacterium glutamicum after exposure to the herbicide 2,4-dichlorophenoxy acetic acid (2,4-D)
Fanous A, Weiland F, Luck C, Gorg A, Friess A, Parlar H.
Chemosphere Early Edition: published 11-Jun-2007
Binding of human plasminogen to Bifidobacterium
Candela M, Bergmann S, Vici M, Vitali B, Turroni S, Eikmanns BJ, Hammerschmidt S, Brigidi P.
J Bacteriol Early Edition: published 8-Jun-2007
Proteome phenotyping of acid stress-resistant mutants of Lactococcus lactis MG1363
Aurélie Budin-Verneuil, Vianney Pichereau, Yanick Auffray, Dusko Ehrlich, Emmanuelle Maguin
PROTEOMICS (2007) 7(12): 2038-2046
Immunodominant Francisella tularensis antigens identified using proteome microarray. ©Crown Copyright 2007 Dstl
Jim E. Eyles, Berkay Unal, Margaret Gill Hartley, Sarah L. Newstead, Helen Flick-Smith, Joann L. Prior, Petra C. F. Oyston, Arlo Randall, Yunxiang Mu, Siddiqua Hirst, Douglas M. Molina, D. Huw Davies, Tim Milne, Kate F. Griffin, Pierre Baldi, Rick W. Titball, Philip L. Felgner
PROTEOMICS (2007) 7(13): 2172-2183
Genetic and proteomic analyses of CO utilization by Methanosarcina acetivorans
Rother M, Oelgeschlager E, W Metcalf W.
Arch Microbiol Early Edition: published 7-Jun-2007
Copper-Induction of Lactate Oxidase (LctO) of Lactococcus lactis: A Novel Metal Stress-Response
Barre O, Mourlane F, Solioz M.
J Bacteriol Early Edition: published 8-Jun-2007
Membrane proteome in Escherichia coli probed by MS(3) mass spectrometry: a preliminary report
Cirulli C, Marino G, Amoresano A.
Rapid Commun Mass Spectrom (2007) 21(14): 2389-2397
Fluoranthene metabolism and associated proteins in Mycobacterium sp. JS14
Sung-Eun Lee, Jong-Su Seo, Young-Soo Keum, Kwang-Jun Lee, Qing X. Li
PROTEOMICS (2007) 7(12): 2059-2069
Cell-cell communication in sourdough lactic acid bacteria: A proteomic study in Lactobacillus sanfranciscensis CB1
Raffaella Di Cagno, Maria De Angelis, Antonio Limitone, Fabio Minervini, Maria Carmela Simonetti, Solange Buchin, Marco Gobbetti
PROTEOMICS (2007) 7(14): 2430-2446
Direct analysis of the extracellular proteome from two strains of Helicobacter pylori
Todd G. Smith, Jae-Min Lim, Michael V. Weinberg, Lance Wells, Timothy R. Hoover
PROTEOMICS (2007) 7(13): 2240-2245
A semi-guantitative GeLC-MS analysis of temporal proteome expression in the emerging nosocomial pathogen Ochrobactrum anthropi
Graham RL, Sharma MK, Ternan NG, Weatherly DB, Tarleton RL, McMullan G.
Genome Biol (2007) 8(6): R110
Identification of quorum sensing-related regulons in Vibrio vulnificus by two-dimensional gel electrophoresis and differentially displayed reverse transcriptase PCR
Shin NR, Lee DY, Yoo HS.
FEMS Immunol Med Microbiol (2007) 50(1): 94-103
Proteomic analysis of high-molecular-weight protein polymers in a doxorubicin-resistant breast-cancer cell line
Sung-Soo Park, Dae-Seok Kim, Kang-Seo Park, Hye-Jin Song, Soo-Youl Kim
PROTEOMICS - Clinical Applications (2007) 1(6): 555-560
A proteomic method for analysis of CYP450s protein expression changes in carbon tetrachloride induced male rat liver microsomes
Jia N, Liu X, Wen J, Qian L, Qian X, Wu Y, Fan G.
Toxicology (2007) 237(1-3): 1-11
Proteome-wide changes induced by the Hsp90 inhibitor, geldanamycin in anaplastic large cell lymphoma cells
Jonathan A. Schumacher, David K. Crockett, Kojo S. J. Elenitoba-Johnson, Megan S. Lim
PROTEOMICS (2007) 7(15): 2603-2616
Cell viability and proteomic analysis in cultured neurons exposed to methylmercury
Vendrell I, Carrascal M, Vilaro MT, Abian J, Rodriguez-Farre E, Sunol C.
Hum Exp Toxicol (2007) 26(4): 263-72
Serum Proteomic Analysis Identifies a Highly Sensitive and Specific Discriminatory Pattern in Stage 1 Breast Cancer
Belluco C, Petricoin EF, Mammano E, Facchiano F, Ross-Rucker S, Nitti D, Maggio CD, Liu C, Lise M, Liotta LA, Whiteley G.
Ann Surg Oncol Early Edition: published 27-Jun-2007
A high-throughput strategy for protein profiling in cell microarrays using automated image analysis
Sara Strömberg, Marcus Gry Björklund, Caroline Asplund, Anna Sköllermo, Anja Persson, Kenneth Wester, Caroline Kampf, Peter Nilsson, Ann-Catrin Andersson, Mathias Uhlen, Juha Kononen, Fredrik Ponten, Anna Asplund
PROTEOMICS (2007) 7(13): 2142-2150
Peptidomic analysis of rat urine using capillary electrophoresis coupled to mass spectrometry
Moritz Frommberger, Petra Zürbig, Justyna Jantos, Thomas Krahn, Harald Mischak, Andreas Pich, Ingo Just, Philippe Schmitt-Kopplin, Eric Schiffer
PROTEOMICS - Clinical Applications (2007) 1(7): 650-660
High-Throughput Phosphotyrosine Profiling Using SH2 Domains
Machida K, Thompson CM, Dierck K, Jablonowski K, Karkkainen S, Liu B, Zhang H, Nash PD, Newman DK, Nollau P, Pawson T, Renkema GH, Saksela K, Schiller MR, Shin DG, Mayer BJ.
Mol Cell (2007) 26(6): 899-915
A protein chip approach for high-throughput antigen identification and characterization
Shaohui Hu, Yu Li, Guozhen Liu, Qifeng Song, Li Wang, Yuning Han, Yang Zhang, Yali Song, Xiying Yao, Yong Tao, Haipan Zeng, Huanming Yang, Jian Wang, Heng Zhu, Zhi-Nan Chen, Lin Wu
PROTEOMICS (2007) 7(13): 2151-2161
Protein arrays for biomarker discovery
Reid JD, Parker CE, Borchers CH.
Curr Opin Mol Ther (2007) 9(3): 216-21
Autoantibody microarrays for biomarker discovery
Robert J Caiazzo Jr, Oliver W Tassinari, Joshua R Ehrlich, Brian CS Liu
Expert Review of Proteomics (2007) 4(2): 261-272
Arraying proteins by cell-free synthesis
He M, Wang MW.
Biomol Eng Early Edition: published 31-May-2007
An array of possibilities in cancer research using cytokine antibody arrays
Ruo-Pan Huang
Expert Review of Proteomics (2007) 4(2): 299-308
pI-based phosphopeptide enrichment combined with nanoESI-MS
Chien-Wen Hung, Dieter Kübler, Wolf D. Lehmann
ELECTROPHORESIS (2007) 28(12): 2044-2052
Structural Characterization of the Human Eukaryotic Initiation Factor 3 Protein Complex by Mass Spectrometry
Eugen Damoc, Christopher S. Fraser, Min Zhou, Hortense Videler, Greg L. Mayeur, John W. B. Hershey, Jennifer A. Doudna, Carol V. Robinson, and Julie A. Leary
Mol Cell Proteomics (2007) 6(7): 1135-1146
Glycosylation profiling in clinical proteomics: heading for glycan biomarkers
Manfred Wuhrer
Expert Review of Proteomics (2007) 4(2): 135-136
S-cysteinylation is a general mechanism for thiol protection of Bacillus subtilis proteins after oxidative stress
Hochgrafe F, Mostertz J, Pother DC, Becher D, Helmann JD, Hecker M.
J Biol Chem Early Edition: published 4-Jul-2007
Toward a global characterization of the phosphoproteome in prostate cancer cells: Identification of phosphoproteins in the LNCaP cell line
Francesco Giorgianni, Yingxin Zhao, Dominic M. Desiderio, Sarka Beranova-Giorgianni
ELECTROPHORESIS (2007) 28(12): 2027-2034
Con A affinity glycoproteomics of normal human liver tissue
Sun Q, Liu Y, Lu W, Cheng G, Zhou H, Zhou X, Wei L, Dai Z, Guo K, Lu H.
Sci China C Life Sci (2007) 50(3): 403-11
Identification of oxidative post-translational modification of serum albumin in patients with idiopathic pulmonary arterial hypertension and pulmonary hypertension of sickle cell anemia
Adam Odhiambo, David H. Perlman, Hua Huang, Catherine E. Costello, Harrison W. Farber, Martin H. Steinberg, Mark E. McComb, Elizabeth S. Klings
Rapid Communications in Mass Spectrometry (2007) 21(14): 2195-2203
Proteome-wide identification of in vivo targets of DNA damage checkpoint kinases
Smolka MB, Albuquerque CP, Chen SH, Zhou H.
Proc Natl Acad Sci U S A (2007) 104(25): 10364-9
Regulation of the protein disulfide proteome by mitochondria in mammalian cells
Yang Y, Song Y, Loscalzo J.
Proc Natl Acad Sci U S A (2007) 104(26): 10813-7
Post-translational modifications of the basic peroxidase isoenzyme from Zinnia elegans
Gabaldon C, Gomez-Ros LV, Nunez-Flores MJ, Esteban-Carrasco A, Barcelo AR.
Plant Mol Biol Early Edition: published 22-Jun-2007
Phosphoproteomic analysis of neuronal cell death by glutamate-induced oxidative stress
Tae Hyuk Kang, Kwang-Hee Bae, Min-jung Yu, Won-Kon Kim, Hyang-Ran Hwang, Hyeyun Jung, Phil Young Lee, Sunghyun Kang, Tae-Sung Yoon, Sung Goo Park, Seong Eon Ryu, Sang Chul Lee
PROTEOMICS (2007) 7(15): 2624-2635
Identification of phosphoproteins and determination of phosphorylation sites by zirconium dioxide enrichment and SELDI-MS/MS
Cuccurullo M, Schlosser G, Cacace G, Malorni L, Pocsfalvi G.
J Mass Spectrom (2007) 42(8): 1069-78
Mass spectrometry-based strategies for characterization of histones and their post-translational modifications
Xiaodan Su, Chen Ren, Michael A Freitas
Expert Review of Proteomics (2007) 4(2): 211-225
Emerging methods in proteomics: top-down protein characterization by multistage tandem mass spectrometry
Scherperel G, Reid GE.
Analyst (2007) 132(6): 500-6
Spectral networks: a new approach to de novo discovery of protein sequences and posttranslational modifications
Bandeira N.
Biotechniques (2007) 42(6): 691 passim
Phosphopeptide Enrichment by Aliphatic Hydroxy Acid-modified Metal Oxide Chromatography for Nano-LC-MS/MS in Proteomics Applications
Naoyuki Sugiyama, Takeshi Masuda, Kosaku Shinoda, Akihiro Nakamura, Masaru Tomita, and Yasushi Ishihama
Mol Cell Proteomics (2007) 6(6): 1103-1109
A multiplexed post-translational modification monitoring approach on a matrix-assisted laser desorption/ionization time-of-flight/time-of-flight mass spectrometer
Michael D. Hoffman, Jason C. Rogalski, Matthew J. Sniatynski, Jennifer Locke, Juergen Kast
Rapid Communications in Mass Spectrometry (2007) 21(13): 2147-2156
Tailored Glycoproteomics and Glycan Site Mapping Using Saccharide-Selective Bioorthogonal Probes
Hanson SR, Hsu TL, Weerapana E, Kishikawa K, Simon GM, Cravatt BF, Wong CH.
J Am Chem Soc (2007) 129(23): 7266-7
Comparative glycoproteomics based on lectins affinity capture of N-linked glycoproteins from human Chang liver cells and MHCC97-H cells
Zhibin Xu, Xinwen Zhou, Haojie Lu, Nan Wu, Hongbo Zhao, Lineng Zhang, Wen Zhang, Yu Long Liang, Liying Wang, Yinkun Liu, Pengyuan Yang, Xiliang Zha
PROTEOMICS (2007) 7(14): 2358-2370
Proteomic analysis of N-glycosylation in mosquito dopachrome conversion enzyme
Junsuo S. Li, Christopher J. Vavricka, Bruce M. Christensen, Jianyong Li
PROTEOMICS (2007) 7(15): 2557-2569
Electron capture dissociation in the analysis of protein phosphorylation
Steve MM Sweet, Helen J Cooper
Expert Review of Proteomics (2007) 4(2): 149-159
Valsartan reverses post-translational modifications of the ?-subunit of ATP synthase during in vivo canine reperfused myocardial infarction
Grzegorz Sawicki, Bodh I. Jugdutt
PROTEOMICS (2007) 7(12): 2100-2110
Mass spectrometry-based analyses for identifying and characterizing S-nitrosylation of protein tyrosine phosphatases
Chen YY, Huang YF, Khoo KH, Meng TC.
Methods (2007) 42(3): 243-249
A combination of neutral loss and targeted product ion scanning with two enzymatic digestions facilitates the comprehensive mapping of phosphorylation sites
Juan Casado-Vela, Edgar J. Ruiz, Angel R. Nebreda, J. Ignacio Casal
PROTEOMICS (2007) 7(15): 2522-2529
High-Throughput Phosphotyrosine Profiling Using SH2 Domains
Machida K, Thompson CM, Dierck K, Jablonowski K, Karkkainen S, Liu B, Zhang H, Nash PD, Newman DK, Nollau P, Pawson T, Renkema GH, Saksela K, Schiller MR, Shin DG, Mayer BJ.
Mol Cell (2007) 26(6): 899-915
Increased Protein Nitration Burden in the Atherosclerotic Lesions and Plasma of Apolipoprotein A-I-Deficient Mice
Parastatidis I, Thomson L, Fries DM, Moore RE, Tohyama J, Fu X, Hazen SL, Heijnen HF, Dennehy MK, Liebler DC, Rader DJ, Ischiropoulos H.
Circ Res Early Edition: published 5-Jul-2007
Isolation of N-Linked Glycopeptides from Plasma
Zhou Y, Aebersold R, Zhang H.
Anal Chem Early Edition: published 26-Jun-2007
Membrane proteome in Escherichia coli probed by MS3 mass spectrometry: a preliminary report
Claudia Cirulli, Gennaro Marino, Angela Amoresano
Rapid Communications in Mass Spectrometry (2007) 21(14): 2389-2397
Analysis of modified apolipoprotein B-100 structures formed in oxidized low-density lipoprotein using LC-MS/MS
Takashi Obama, Rina Kato, Yutaka Masuda, Katsuhiko Takahashi, Toshihiro Aiuchi, Hiroyuki Itabe
PROTEOMICS (2007) 7(13): 2132-2141
Palmitoylated proteins: purification and identification
Wan J, Roth AF, Bailey AO, Davis NG.
Nat Protoc (2007) 2(7): 1573-84
Specific capture of phosphopeptides on matrix-assisted laser desorption/ionization time-of-flight mass spectrometry targets modified by magnetic affinity nanoparticles
Tan F, Zhang Y, Wang J, Wei J, Qin P, Cai Y, Qian X.
Rapid Commun Mass Spectrom (2007) 21(14): 2407-2414
Arginine-mimic labeling with guanidinoethanethiol to increase mass sensitivity of lysine-terminated phosphopeptides by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry
Yeong Hee Ahn, Eun Sun Ji, Ji Yeon Lee, Kun Cho, Jong Shin Yoo
Rapid Communications in Mass Spectrometry (2007) 21(14): 2204-2210
Shotgun Protein Sequencing: Assembly of Peptide Tandem Mass Spectra from Mixtures of Modified Proteins
Nuno Bandeira, Karl R. Clauser, and Pavel A. Pevzner
Mol Cell Proteomics (2007) 6(7): 1123-1134
Detection of hydrolysis of lipid post-translational modifications during gel-electrophoresis-based proteomic protocol
Jitka ?ídková, Pavel ?ehulka, Josef Chmelík
PROTEOMICS (2007) 7(15): 2507-2510
Proteomic changes in mammalian spermatozoa during epididymal maturation
Aitken RJ, Nixon B, Lin M, Koppers AJ, Lee YH, Baker MA.
Asian J Androl (2007) 9(4): 554-64
Systematic Discovery of In Vivo Phosphorylation Networks
Linding R, Jensen LJ, Ostheimer GJ, van Vugt MA, Jorgensen C, Miron IM, Diella F, Colwill K, Taylor L, Elder K, Metalnikov P, Nguyen V, Pasculescu A, Jin J, Park JG, Samson LD, Woodgett JR, Russell RB, Bork P, Yaffe MB, Pawson T.
Cell (2007) 129(7): 1415-26
A Tandem Affinity Purification-based Technology Platform to Study the Cell Cycle Interactome in Arabidopsis thaliana
Jelle Van Leene, Hilde Stals, Dominique Eeckhout, Geert Persiau, Eveline Van De Slijke, Gert Van Isterdael, Annelies De Clercq, Eric Bonnet, Kris Laukens, Noor Remmerie, Kim Henderickx, Thomas De Vijlder, Azmi Abdelkrim, Anne Pharazyn, Harry Van Onckelen, Dirk Inze, Erwin Witters, and Geert De Jaeger
Mol Cell Proteomics (2007) 6(7): 1226-1238
Computational analysis of human protein interaction networks
Fidel Ramírez, Andreas Schlicker, Yassen Assenov, Thomas Lengauer, Mario Albrecht
PROTEOMICS (2007) 7(15): 2541-2552
Analysis of protein complexes using mass spectrometry
Gingras AC, Gstaiger M, Raught B, Aebersold R.
Nat Rev Mol Cell Biol (2007) 8(8): 645-654
Probabilistic prediction and ranking of human protein-protein interactions
Scott MS, Barton GJ.
BMC Bioinformatics (2007) 8(1): 239
Purification of the Prep1 interactome identifies novel pathways regulated by Prep1
Víctor M. Díaz, Angela Bachi, Francesco Blasi
PROTEOMICS (2007) 7(15): 2617-2623
A systems biology approach to the study of Cisplatin drug resistance in ovarian cancers
Chen JY, Yan Z, Shen C, Fitzpatrick DP, Wang M.
J Bioinform Comput Biol (2007) 5(2): 383-405
Analysis of protein/polypeptide interactions in human plasma using nondenaturing micro-2-DE followed by 3-D SDS-PAGE and MS
Takashi Manabe, Ya Jin
ELECTROPHORESIS (2007) 28(12): 2065-2079
Scaffolds for blocking protein-protein interactions
Hershberger SJ, Lee SG, Chmielewski J.
Curr Top Med Chem (2007) 7(10): 929-43
Laboratory methods to improve SELDI peak detection and quantitation
Rollin D, Whistler T, Vernon SD
Proteome Science (2007) 5: 9
High-Throughput Quantitative Profiling of Serum N-Glycome by MALDI-TOF Mass Spectrometry and N-Glycomic Fingerprint of Liver Fibrosis
Kam RK, Poon TC, Chan HL, Wong N, Hui AY, Sung JJ.
Clin Chem (2007) 53(7): 1254-1263
Quantitative analysis of a proteome by N-terminal stable-isotope labelling of tryptic peptides
Michael Fedjaev, Stephanie Trudel, Natascha Tjon-A-Pan, Amanda Parmar, Barry I. Posner, Emile Levy, Ilya Nifant'ev, Alexey V. Pshezhetsky
Rapid Communications in Mass Spectrometry (2007) 21(16): 2671-2679
Quantitative Phosphoproteomics of Early Elicitor Signaling in Arabidopsis
Joris J. Benschop, Shabaz Mohammed, Martina O'Flaherty, Albert J. R. Heck, Monique Slijper, and Frank L. H. Menke
Mol Cell Proteomics (2007) 6(7): 1198-1214
Reproducibility Assessment of Relative Quantitation Strategies for LC-MS Based Proteomics
Kim YJ, Zhan P, Feild B, Ruben SM, He T.
Anal Chem Early Edition: published 20-Jun-2007
Precise protein quantification based on peptide quantification using iTRAQ
Boehm AM, Puetz S, Altenhofer D, Sickmann A, Falk M.
BMC Bioinformatics (2007) 8(1): 214
Tags for the Stable Isotopic Labeling of Carbohydrates and Quantitative Analysis by Mass Spectrometry
Bowman MJ, Zaia J.
Anal Chem (2007) 79(15): 5777-84
Isotope labeling of Bifidobacterium longum cells with 13C-substituted leucine for quantitative proteomics
Coute Y, Hernandez C, Appel RD, Sanchez JC, Margolles A.
Appl Environ Microbiol Early Edition: published 29-Jun-2007
CILAT - a new reagent for quantitative proteomics
Li S, Zeng D.
Chem Commun (Camb) (2007) (21): 2181-3.
Proteome-wide identification of in vivo targets of DNA damage checkpoint kinases
Smolka MB, Albuquerque CP, Chen SH, Zhou H.
Proc Natl Acad Sci U S A (2007) 104(25): 10364-9
Coupling immunoaffinity techniques with MS for quantitative analysis of low-abundance protein biomarkers
Bradley L Ackermann, Michael J Berna
Expert Review of Proteomics (2007) 4(2): 175-186
Recent advances in neuroproteomics
Andrade EC, Krueger DD, Nairn AC.
Curr Opin Mol Ther (2007) 9(3): 270-81
Current trends in computational inference from mass spectrometry-based proteomics
Webb-Robertson, B.-J. M., Cannon, W. R.
Brief Bioinform Early Edition: published 20-Jun-2007
Thyroid cancer: are molecular studies making any difference?
Kim DS.
J Laryngol Otol Early Edition: published 25-Jun-2007
Proteomics in uveal melanoma research: opportunities and challenges in biomarker discovery
Maria Pardo, Raymond A Dwek, Nicole Zitzmann
Expert Review of Proteomics (2007) 4(2): 273-286
Integrative analysis of transcriptomic and proteomic data: challenges, solutions and applications
Nie L, Wu G, Culley DE, Scholten JC, Zhang W.
Crit Rev Biotechnol (2007) 27(2): 63-75
Proteomics in atherothrombosis: a future perspective
Jose Luis Martin-Ventura, Luis Miguel Blanco-Colio, Jose Tunon, Carmen Gomez-Guerrero, Jean-Baptiste Michel, Olivier Meilhac, Jesus Egido
Expert Review of Proteomics (2007) 4(2): 249-260
Arraying proteins by cell-free synthesis
He M, Wang MW.
Biomol Eng Early Edition: published 31-May-2007
Proteomic biomarker discovery for the monogenic disease cystic fibrosis
Deborah Penque
Expert Review of Proteomics (2007) 4(2): 199-209
Antibody arrays-An emerging tool in cancer proteomics
Kopf E, Zharhary D.
Int J Biochem Cell Biol (2007) 39(7-8): 1305-17
Technology insight: the application of proteomics in gastrointestinal disease
Din S, Lennon AM, Arnott ID, Hupp T, Satsangi J.
Nat Clin Pract Gastroenterol Hepatol (2007) 4(7): 372-85
Glycosylation profiling in clinical proteomics: heading for glycan biomarkers
Manfred Wuhrer
Expert Review of Proteomics (2007) 4(2): 135-136
Promise of multiphoton detection in discovery and diagnostic proteomics
Jasminka Godovac-Zimmermann, Claire Mulvey, Maria Konstantoulaki, Richard Sainsbury, Larry R Brown
Expert Review of Proteomics (2007) 4(2): 161-173
Proteomic approach to aging research
Victor S Sharov, Christian Schoneich
Expert Review of Proteomics (2007) 4(2): 309-321
Proteomics of Alzheimer's disease: understanding mechanisms and seeking biomarkers
Simon Lovestone, Andreas Guntert, Abdul Hye, Steven Lynha