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SPS' DigestIssue 44, 10-Sep-2007 |
The Paragon Algorithm, a Next Generation Search Engine That Uses Sequence Temperature Values and Feature Probabilities to Identify Peptides from Tandem Mass Spectra
Ignat V. Shilov, Sean L. Seymour, Alpesh A. Patel, Alex Loboda, Wilfred H. Tang, Sean P. Keating, Christie L. Hunter, Lydia M. Nuwaysir, and Daniel A. Schaeffer
Mol Cell Proteomics (2007) 6(9): 1638-1655
Introduction to computational proteomics
Colinge J, Bennett KL
PLoS Comput Biol (2007) 3(7): e114
GANNPhos: a new phosphorylation site predictor based on a genetic algorithm integrated neural network
Tang YR, Chen YZ, A Canchaya C, Zhang Z.
Protein Eng Des Sel Early Edition: published 24-Jul-2007
Biomarker discovery with SELDI-TOF MS in human urine associated with early renal injury: evaluation with computational analytical tools
Vanhoutte KJ, Laarakkers C, Marchiori E, Pickkers P, Wetzels JF, Willems JL, van den Heuvel LP, Russel FG, Masereeuw R.
Nephrol Dial Transplant Early Edition: published 5-Jul-2007
Determining the Overall Merit of Protein Identification Data Sets: rho-Diagrams and rho-Scores
D. Fenyo, B.S. Phinney, R.C. Beavis
Journal of Proteome Research (2007) 6(5): 1997-2004
PARE: A Tool for Comparing Protein Abundance and mRNA Expression Data
Yu EZ, Counterman Burba AE, Gerstein M
BMC Bioinformatics (2007) 8(1): 309
EcoProDB: the Escherichia coli protein database
Yun H, Lee JW, Jeong J, Chung J, Park JM, Myoung HN, Lee SY.
Bioinformatics Early Edition: published 10-Jul-2007
On consensus biomarker selection
Dutkowski J, Gambin A
BMC Bioinformatics (2007) 8 Suppl 5: S5
Computational prediction of proteotypic peptides
Blonder J, Veenstra TD
Expert Rev Proteomics (2007) 4(3): 351-4
SAMPI: protein identification with mass spectra alignments
Kaltenbach HM, Wilke A, Bocker S
BMC Bioinformatics (2007) 8: 102
Euk-mPLoc: A Fusion Classifier for Large-Scale Eukaryotic Protein Subcellular Location Prediction by Incorporating Multiple Sites
K.-C. Chou, H.-B. Shen
Journal of Proteome Research (2007) 6(5): 1728-1734
Artificial neural networks and decision tree model analysis of liver cancer proteomes
Luk JM, Lam BY, Lee NP, Ho DW, Sham PC, Chen L, Peng J, Leng X, Day PJ, Fan ST.
Biochem Biophys Res Commun (2007) 361(1): 68-73
Statistical prediction of protein chemical interactions based on chemical structure and mass spectrometry data
Nobuyoshi Nagamine and Yasubumi Sakakibara
Bioinformatics (2007) 23(15): 2004-2012
pFind 2.0: a software package for peptide and protein identification via tandem mass spectrometry
Le-heng Wang, De-Quan Li, Yan Fu, Hai-Peng Wang, Jing-Fen Zhang, Zuo-Fei Yuan, Rui-Xiang Sun, Rong Zeng, Si-Min He, Wen Gao
Rapid Communications in Mass Spectrometry (2007) 21(18): 2985-2991
Estimating the Statistical Significance of Peptide Identifications from Shotgun Proteomics Experiments
R.E. Higgs, M.D. Knierman, A. BonnerFreeman, L.M. Gelbert, S.T. Patil, J.E. Hale
Journal of Proteome Research (2007) 6(5): 1758-1767
Optimization of filtering criterion for SEQUEST database searching to improve proteome coverage in shotgun proteomics
Jiang X, Jiang X, Han G, Ye M, Zou H
BMC Bioinformatics (2007) 8(1): 323
How do shotgun proteomics algorithms identify proteins?
Marcotte EM.
Nat Biotechnol (2007) 25(7): 755-7
A suffix tree approach to the interpretation of tandem mass spectra: applications to peptides of non-specific digestion and post-translational modifications
Lu B, Chen T.
Bioinformatics (2003) 19(Suppl 2): ii113-21
Quantitative quality-assessment techniques to compare fractionation and depletion methods in SELDI-TOF mass spectrometry experiments
Harezlak J, Wang M, Christiani D, Lin X.
Bioinformatics Early Edition: published 11-Jul-2007
Comparative Evaluation of Tandem MS Search Algorithms Using a Target-Decoy Search Strategy
Brian M. Balgley, Tom Laudeman, Li Yang, Tao Song, and Cheng S. Lee
Mol Cell Proteomics (2007) 6(9): 1599-1608
A New Algorithm Using Cross-Assignment for Label-Free Quantitation with LC-LTQ-FT MS
V.P. Andreev, L. Li, L. Cao, Y. Gu, T. Rejtar, S.-L. Wu, B.L. Karger
Journal of Proteome Research (2007) 6(6): 2186-2194
VIPER: an advanced software package to support high-throughput LC-MS peptide identification
Matthew E. Monroe, Nikola Tolic, Navdeep Jaitly, Jason L. Shaw, Joshua N. Adkins, and Richard D. Smith
Bioinformatics (2007) 23(15): 2021-2023
The EIPeptiDi tool: enhancing peptide discovery in ICAT-based LC MS/MS experiments
Cannataro M, Cuda G, Gaspari M, Greco S, Tradigo G, Veltri P.
BMC Bioinformatics (2007) 8(1): 255
Mascot File Parsing and Quantification (MFPaQ), a New Software to Parse, Validate, and Quantify Proteomics Data Generated by ICAT and SILAC Mass Spectrometric Analyses: Application To the Proteomics Study of Membrane Proteins from Primary Human Endothelial Cells
David Bouyssie, Anne Gonzalez de Peredo, Emmanuelle Mouton, Renaud Albigot, Lucie Roussel, Nathalie Ortega, Corinne Cayrol, Odile Burlet-Schiltz, Jean-Philippe Girard, and Bernard Monsarrat
Mol Cell Proteomics (2007) 6(9): 1621-1637
Peptide retention prediction applied to proteomic data analysis
Gilar M, Jaworski A, Olivova P, Gebler JC.
Rapid Commun Mass Spectrom (2007) 21(17): 2813-2821
Prediction of cyclin-dependent kinase phosphorylation substrates
Chang EJ, Begum R, Chait BT, Gaasterland T.
PLoS ONE (2007) 2: e656.
The Deuterator: software for the determination of backbone amide deuterium levels from H/D exchange MS data
Pascal BD, Chalmers MJ, Busby SA, Mader CC, Southern MR, Tsinoremas NF, Griffin PR
BMC Bioinformatics (2007) 8: 156
Multivariate Statistical Tools for the Evaluation of Proteomic 2D-maps: Recent Achievements and Applications
Emilio Marengo, Elisa Robotti, Marco Bobba
Current Proteomics (2007) 4(1): 53-66
A proteomic approach to receptor signaling: Molecular mechanisms and therapeutic implications derived from discovery of the dopamine D(2) receptor signalplex
Kabbani N, Levenson R.
Eur J Pharmacol Early Edition: published 10-Jul-2007
The Epidermis of Scales in Gecko Lizards Contains Multiple Forms of β-Keratins Including Basic Glycine-Proline-Serine-Rich Proteins
M. Toni, L. DallaValle, L. Alibardi
Journal of Proteome Research (2007) 6(5): 1792-1805
Proteomic Mapping of Stimulus-Specific Signaling Pathways Involved in THP-1 Cells Exposed to Porphyromonas gingivalis or Its Purified Components
J.A. Saba, M.E. McComb, D.L. Potts, C.E. Costello, S. Amar
Journal of Proteome Research (2007) 6(6): 2211-2221
Recoverin as a Redox-Sensitive Protein
S.E. Permyakov, A.A. Nazipova, A.I. Denesyuk, A.G. Bakunts, D.V. Zinchenko, V.M. Lipkin, V.N. Uversky, E.A. Permyakov
Journal of Proteome Research (2007) 6(5): 1855-1863
Proteomic Analyses of Zebra Finch Optic Tectum and Comparative Histochemistry
S. Sloley, S. Smith, S. Gandhi, J.A. CaldwellBusby, S. London, H. Luksch, D.F. Clayton, S.K. Bhattacharya
Journal of Proteome Research (2007) 6(6): 2341-2350
Global Survey of Human T Leukemic Cells by Integrating Proteomics and Transcriptomics Profiling
Linfeng Wu, Sun-Il Hwang, Karim Rezaul, Long J. Lu, Viveka Mayya, MarkGerstein, Jimmy K. Eng, Deborah H. Lundgren, and David K. Han
Mol Cell Proteomics (2007) 6(8): 1343-1353
Immunity Promotion and Proteomic Identification in Mice upon Exposure to Manganese Superoxide Dismutase Expressed in Silkworm Larvae
W.-f. Yue, J.-m. Liu, J.-t. Sun, G.-l. Li, X.-h. Li, X.-f. Wu, H.-x. Sun, J.-y. Zhou, Y.-g. Miao
Journal of Proteome Research (2007) 6(5): 1875-1881
Nuclear Phospholipase C Gamma: Punctate Distribution and Association with the Promyelocytic Leukemia Protein
B.J. Ferguson, C.L. Dovey, K. Lilley, A.H. Wyllie, T. Rich
Journal of Proteome Research (2007) 6(5): 2027-2032
Consequences of Membrane Protein Overexpression in Escherichia coli
Samuel Wagner, Louise Baars, A. Jimmy Ytterberg, Anja Klussmeier, Claudia S. Wagner, Olof Nord, Per-Ake Nygren, Klaas J. van Wijk, and Jan-Willem de Gier
Mol Cell Proteomics (2007) 6(9): 1527-1550
Proteomic analysis of left ventricular diastolic dysfunction hearts in renovascular hypertensive rats
Junhong W, Jing Y, Jizheng M, Shushu Z, Xiangjian C, Hengfang W, Di Y, Jinan Z.
Int J Cardiol Early Edition: published 27-Jul-2007
Phenols content and 2-D electrophoresis protein pattern:a promising tool to monitor Posidonia meadows health state
Migliore L, Rotini A, Randazzo D, Albanese NN, Giallongo A.
BMC Ecol (2007) 7(1): 6
Proteome Approach To Characterize Proteins Induced by Antagonist Yeast and Salicylic Acid in Peach Fruit
Z. Chan, G. Qin, X. Xu, B. Li, S. Tian
Journal of Proteome Research (2007) 6(5): 1677-1688
Enabling Coupled Quantitative Genomics and Proteomics Analyses from Rat Spinal Cord Samples
R. Hussain Butt, Tom A. Pfeifer, Allen Delaney, Thomas A. Grigliatti, Wolfram G. Tetzlaff, and Jens R. Coorssen
Mol Cell Proteomics (2007) 6(9): 1574-1588
Characterization of the protein profile of donkey's milk whey fraction
Vincenzo Cunsolo, Rosaria Saletti, Vera Muccilli, Salvatore Foti
Journal of Mass Spectrometry (2007) 42(9): 1162-1174
Early drought-induced changes to the needle proteome of Norway spruce
Blodner C, Majcherczyk A, Kues U, Polle A.
Tree Physiol (2007) 27(10): 1423-31
Application of Proteomics to Investigate Plant-Microbe Interactions
Nat NV Kav, Sanjeeva Srivastava, William Yajima, Nidhi Sharma
Current Proteomics (2007) 4(1): 28-43
Identification of Human Olfactory Cleft Mucus Proteins Using Proteomic Analysis
H. Debat, C. Eloit, F. Blon, B. Sarazin, C. Henry, J.-C. Huet, D. Trotier, J.-C. Pernollet
Journal of Proteome Research (2007) 6(5): 1985-1996
Differential Proteomics Analysis of Synaptic Proteins Identifies Potential Cellular Targets and Protein Mediators of Synaptic Neuroprotection Conferred by the Slow Wallerian Degeneration (Wlds) Gene
Thomas M. Wishart, Janet M. Paterson, Duncan M. Short, Sara Meredith, Kevin A. Robertson, Calum Sutherland, Michael A. Cousin, Mayank B. Dutia, and Thomas H. Gillingwater
Mol Cell Proteomics (2007) 6(8): 1318-1330
A direct and simple method of coupling matrix-assisted laser desorption and ionization time-of-flight mass spectrometry (MALDI-TOF MS) to thin-layer chromatography (TLC) for the analysis of phospholipids from egg yolk
Fuchs B, Schiller J, Suss R, Schurenberg M, Suckau D.
Anal Bioanal Chem Early Edition: published 3-Aug-2007
Proteomic Profiling of the Silkworm Skeletal Muscle Proteins during Larval-Pupal Metamorphosis
P. Zhang, Y. Aso, H. Jikuya, T. Kusakabe, J.M. Lee, Y. Kawaguchi, K. Yamamoto, Y. Banno, H. Fujii
Journal of Proteome Research (2007) 6(6): 2295-2303
Diversity of cAMP-Dependent Protein Kinase Isoforms and Their Anchoring Proteins in Mouse Ventricular Tissue
A. Scholten, T.A.B. vanVeen, M.A. Vos, A.J.R. Heck
Journal of Proteome Research (2007) 6(5): 1705-1717
Tumor Necrosis Factor-α- and Interleukin-1-Induced Cellular Responses: Coupling Proteomic and Genomic Information
L.W. Ott, K.A. Resing, A.W. Sizemore, J.W. Heyen, R.R. Cocklin, N.M. Pedrick, H.C. Woods, J.Y. Chen, M.G. Goebl, F.A. Witzmann, M.A. Harrington
Journal of Proteome Research (2007) 6(6): 2176-2185
Proteome of human T lymphocytes with treatment of cyclosporine and polysaccharopeptide: Analysis of significant proteins that manipulate T cells proliferation and immunosuppression
Lee CL, Jiang PP, Sit WH, Wan JM.
Int Immunopharmacol (2007) 7(10): 1311-24
Differential protein expression in the honey bee head after a bacterial challenge
Scharlaken B, De Graaf DC, Memmi S, Devreese B, Van Beeumen J, Jacobs FJ.
Arch Insect Biochem Physiol (2007) 65(4): 223-37
Site-Specific Pyrolysis-Induced Cleavage at Aspartic Acid Residue in Peptides and Proteins
S. Zhang, F. Basile
Journal of Proteome Research (2007) 6(5): 1700-1704
Shotgun Identification of the Structural Proteome of Shrimp White Spot Syndrome Virus and iTRAQ Differentiation of Envelope and Nucleocapsid Subproteomes
Zhengjun Li, Qingsong Lin, Jing Chen, Jin Lu Wu, Teck Kwang Lim, Siew See Loh, Xuhua Tang, and Choy-Leong Hew
Mol Cell Proteomics (2007) 6(9): 1609-1620
Proteomic and biochemical evidence links the callose synthase in Nicotiana alata pollen tubes to the product of the NaGSL1 gene
Brownfield L, Ford K, Doblin MS, Newbigin E, Read S, Bacic A.
Plant J Early Edition: published 30-Jul-2007
Type 5 adenylyl cyclase disruption increases longevity and protects against stress
Yan L, Vatner DE, O'connor JP, Ivessa A, Ge H, Chen W, Hirotani S, Ishikawa Y, Sadoshima J, Vatner SF.
Cell (2007) 130(2): 247-58
Proteome Analysis Suggests That Mitochondrial Dysfunction in Stressed Endothelial Cells Is Reversed by a Soy Extract and Isolated Isoflavones
D. Fuchs, B. Dirscherl, J.H. Schroot, H. Daniel, U. Wenzel
Journal of Proteome Research (2007) 6(6): 2132-2142
Metabolic Modulation Induced by Chronic Hypoxia in Rats Using a Comparative Proteomic Analysis of Skeletal Muscle Tissue
S. DePalma, M. Ripamonti, A. Vigano, M. Moriggi, D. Capitanio, M. Samaja, G. Milano, P. Cerretelli, R. Wait, C. Gelfi
Journal of Proteome Research (2007) 6(5): 1974-1984
Proteomic Analysis Reveals a Metabolism Shift in a Laboratory Fluconazole-Resistant Candida albicans Strain
L. Yan, J.-D. Zhang, Y.-B. Cao, P.-H. Gao, Y.-Y. Jiang
Journal of Proteome Research (2007) 6(6): 2248-2256
Identification of Protein Components in in vivo Human Acquired Enamel Pellicle Using LC-ESI-MS/MS
W.L. Siqueira, W. Zhang, E.J. Helmerhorst, S.P. Gygi, F.G. Oppenheim
Journal of Proteome Research (2007) 6(6): 2152-2160
Quantitative Mass Spectrometry Identifies Insulin Signaling Targets in C. elegans
Dong MQ, Venable JD, Au N, Xu T, Park SK, Cociorva D, Johnson JR, Dillin A, Yates JR 3rd.
Science (2007) 317(5838): 660-3
The Proteome of the Mouse Photoreceptor Sensory Cilium Complex
Qin Liu, Glenn Tan, Natasha Levenkova, Tiansen Li, Edward N. Pugh, Jr., John J. Rux, David W. Speicher, and Eric A. Pierce
Mol Cell Proteomics (2007) 6(8): 1299-1317
Comprehensive Proteomic Mass Spectrometric Characterization of Human Cannabinoid CB2 Receptor
N. Zvonok, S. Yaddanapudi, J. Williams, S. Dai, K. Dong, T. Rejtar, B.L. Karger, A. Makriyannis
Journal of Proteome Research (2007) 6(6): 2068-2079
Proteomic screen in the simple metazoan Hydra identifies 14-3-3 binding proteins implicated in cellular metabolism, cytoskeletal organisation and Ca2+ signalling
Pauly B, Lasi M, Mackintosh C, Morrice N, Imhof A, Regula J, Rudd S, David CN, Bottger A.
BMC Cell Biol (2007) 8(1): 31
Novel Tonoplast Transporters Identified using a Proteomic Approach with Vacuoles Isolated from Cauliflower Buds
Schmidt UG, Endler A, Schelbert S, Brunner A, Schnell M, Neuhaus HE, Marty-Mazars D, Marty F, Baginsky S, Martinoia E.
Plant Physiol Early Edition: published 27-Jul-2007
Metabonomic Studies on the Physiological Effects of Acute and Chronic Psychological Stress in Sprague-Dawley Rats
C.R. Teague, F.S. Dhabhar, B. Beckwith-Hall, J. Powell, M. Cobain, B. Singer, B.S. McEwen, J.C. Lindon, R.H. Barton, J.K. Nicholson, E. Holmes
Journal of Proteome Research (2007) 6(6): 2080-2093
Proteomics-based dissection of stress-responsive pathways in plants
Qureshi MI, Qadir S, Zolla L.
J Plant Physiol Early Edition: published 25-Jul-2007
Proteomics of Neuroendocrine Secretory Vesicles Reveal Distinct Functional Systems for Biosynthesis and Exocytosis of Peptide Hormones and Neurotransmitters
J. Wegrzyn, J. Lee, J.M. Neveu, W.S. Lane, V. Hook
Journal of Proteome Research (2007) 6(5): 1652-1665
Post-Transcriptional Control of the Saccharomyces cerevisiae Proteome by 14-3-3 Proteins
A. Bruckmann, P.J. Hensbergen, C.I.A. Balog, A.M. Deelder, H.Y. Steensma, G.P.H. vanHeusden
Journal of Proteome Research (2007) 6(5): 1689-1699
Metabonomic Investigations of Aging and Caloric Restriction in a Life-Long Dog Study
Y. Wang, D. Lawler, B. Larson, Z. Ramadan, S. Kochhar, E. Holmes, J.K. Nicholson
Journal of Proteome Research (2007) 6(5): 1846-1854
Imaging Mass Spectrometry of Neuropeptides in Decapod Crustacean Neuronal Tissues
S.S. DeKeyser, K.K. Kutz-Naber, J.J. Schmidt, G.A. Barrett-Wilt, L. Li
Journal of Proteome Research (2007) 6(5): 1782-1791
Chromosome protein framework from proteome analysis of isolated human metaphase chromosomes
Fukui K, Uchiyama S.
Chem Rec (2007) 7(4): 230-237
Detection and Validation of Non-synonymous Coding SNPs from Orthogonal Analysis of Shotgun Proteomics Data
M.K. Bunger, B.J. Cargile, J.R. Sevinsky, E. Deyanova, N.A. Yates, R.C. Hendrickson, J.L. Stephenson
Journal of Proteome Research (2007) 6(6): 2331-2340
Salt-induced Changes in the Plasma Membrane Proteome of the Halotolerant Alga Dunaliella salina as Revealed by Blue Native Gel Electrophoresis and Nano-LC-MS/MS Analysis
Adriana Katz, Patrice Waridel, Andrej Shevchenko, and Uri Pick
Mol Cell Proteomics (2007) 6(9): 1459-1472
Novel Subunits of the Mammalian Hsp90 Signal Transduction Chaperone
J. Te, L. Jia, J. Rogers, A. Miller, S.D. Hartson
Journal of Proteome Research (2007) 6(5): 1963-1973
Comparative proteomics of cell division mutants and wild-type of Synechococcus sp. strain PCC 7942
Koksharova OA, Klint J, Rasmussen U.
Microbiology (2007) 153(Pt 8): 2505-2517
Molecular Identification of Four Different alpha-amylase Inhibitors from Baru (Dipteryx alata) Seeds with Activity Toward Insect Enzymes
Bonavides KB, Pelegrini PB, Laumann RA, Grossi-de-Sa MF, Jr CB, Melo JA, Quirino BF, Noronha EF, Franco OL.
J Biochem Mol Biol (2007) 40(4): 494-500
Mass Spectrometric Analysis of the Endogenous Type I Interleukin-1 (IL-1) Receptor Signaling Complex Formed after IL-1 Binding Identifies IL-1RAcP, MyD88, and IRAK-4 as the Stable Components
Constantinos Brikos, Robin Wait, Shajna Begum, Luke A. J. O'Neill, andJeremy Saklatvala
Mol Cell Proteomics (2007) 6(9): 1551-1559
Dosage-Dependent Proteome Response of Shewanella oneidensis MR-1 to Acute Chromate Challenge
M.R. Thompson, N.C. VerBerkmoes, K. Chourey, M. Shah, D.K. Thompson, R.L. Hettich
Journal of Proteome Research (2007) 6(5): 1745-1757
Proteome analysis of Apis mellifera royal jelly
Schonleben S, Sickmann A, Mueller MJ, Reinders J.
Anal Bioanal Chem Early Edition: published 3-Aug-2007
Attachment of LcrV from Yersinia pestis at Dual Binding Sites to Human TLR-2 and Human IFN-γ Receptor
V.M. Abramov, V.S. Khlebnikov, A.M. Vasiliev, I.V. Kosarev, R.N. Vasilenko, N.L. Kulikova, A.V. Khodyakova, V.I. Evstigneev, V.N. Uversky, V.L. Motin, G.B. Smirnov, R.R. Brubaker
Journal of Proteome Research (2007) 6(6): 2222-2231
A Multivariate Screening Strategy for Investigating Metabolic Effects of Strenuous Physical Exercise in Human Serum
E. Pohjanen, E. Thysell, P. Jonsson, C. Eklund, A. Silfver, I.-B. Carlsson, K. Lundgren, T. Moritz, M.B. Svensson, H. Antti
Journal of Proteome Research (2007) 6(6): 2113-2120
Serum proteomic analysis focused on fibrosis in patients with hepatitis C virus infection
White IR, Patel K, Symonds WT, Dev A, Griffin P, Tsokanas N, Skehel M, Liu C, Zekry A, Cutler P, Gattu M, Rockey DC, Berrey MM, McHutchison JG.
J Transl Med (2007) 5(1): 33
Proteomic analysis of bone cancer: a review of current and future developments
Bhattacharyya S, Byrum S, Siegel ER, Suva LJ
Expert Rev Proteomics (2007) 4(3): 371-8
Metabolic Profiling Analysis of a D-Galactosamine/Lipopolysaccharide-Induced Mouse Model of Fulminant Hepatic Failure
B. Feng, S. Wu, S. Lv, F. Liu, H. Chen, X. Yan, Y. Li, F. Dong, L. Wei
Journal of Proteome Research (2007) 6(6): 2161-2167
Role of proteomics in the investigation of pulmonary fibrosis
Govender P, Baugh JA, Pennington SR, Dunn MJ, Donnelly SC
Expert Rev Proteomics (2007) 4(3): 379-88
The blood platelet proteome is changed in UREMIC patients
Walkowiak B, Kaminska M, Okroj W, Tanski W, Sobol A, Zbrog Z, Przybyszewska-Doros I.
Platelets (2007) 18(5): 386-8
Characterization of Diabetic Nephropathy by Urinary Proteomic Analysis: Identification of a Processed Ubiquitin Form as a Differentially Excreted Protein in Diabetic Nephropathy Patients
Dihazi H, Muller GA, Lindner S, Meyer M, Asif AR, Oellerich M, Strutz F.
Clin Chem (2007) 53(9): 1636-45
Intestinal epithelial cell signalling and chronic inflammation: From the proteome to specific molecular mechanisms
Werner T, Haller D.
Mutat Res (2007) 622(1-2): 42-57
NMR-based metabolomics approach to target biomarkers for human prostate cancer
Jordan KW, Cheng LL
Expert Rev Proteomics (2007) 4(3): 389-400
Vascular proteomic mapping in vivo
Simonson AB, Schnitzer JE.
J Thromb Haemost (2007) 5(Suppl 1): 183-7
Differential proteome analysis of normal and osteoarthritic chondrocytes reveals distortion of vimentin network in osteoarthritis
Lambrecht S, Verbruggen G, Verdonk PC, Elewaut D, Deforce D.
Osteoarthritis Cartilage Early Edition: published 19-Jul-2007
Proteomic profiling of human liver biopsies: Hepatitis C virus-induced fibrosis and mitochondrial dysfunction
Diamond DL, Jacobs JM, Paeper B, Proll SC, Gritsenko MA, Carithers RL Jr, Larson AM, Yeh MM, Camp DG 2nd, Smith RD, Katze MG.
Hepatology Early Edition: published 25-Jul-2007
Quantitative Proteomics Analysis Reveals That Proteins Differentially Expressed in Chronic Pancreatitis Are Also Frequently Involved in Pancreatic Cancer
Ru Chen, Teresa A. Brentnall, Sheng Pan, Kelly Cooke, Kara White Moyes, Zhaoli Lane, David A. Crispin, David R. Goodlett, Ruedi Aebersold, and Mary P. Bronner
Mol Cell Proteomics (2007) 6(8): 1331-1342
Novel neuroproteomic approaches to studying traumatic brain injury
Ottens AK, Kobeissy FH, Fuller BF, Chen Liu M, Oli MW, Hayes RL, Wang KK.
Prog Brain Res (2007) 161C: 401-418
Retinal Mueller Glial Cells Trigger the Hallmark Inflammatory Process in Autoimmune Uveitis
S.M. Hauck, S. Schoeffmann, B. Amann, M. Stangassinger, H. Gerhards, M. Ueffing, C.A. Deeg
Journal of Proteome Research (2007) 6(6): 2121-2131
Proteomics-based identification of proteins secreted in apical surface fluid of squamous metaplastic human tracheobronchial epithelial cells cultured by three-dimensional organotypic air-liquid interface method
Kim SW, Cheon K, Kim CH, Yoon JH, Hawke DH, Kobayashi R, Prudkin L, Wistuba II, Lotan R, Hong WK, Koo JS.
Cancer Res (2007) 67(14): 6565-73
Alterations in the Serum Glycome Due to Metastatic Prostate Cancer
Z. Kyselova, Y. Mechref, M.M. AlBataineh, L.E. Dobrolecki, R.J. Hickey, J. Vinson, C.J. Sweeney, M.V. Novotny
Journal of Proteome Research (2007) 6(5): 1822-1832
Down-regulation of beta-centractin might be involved in dendritic cells dysfunction and subsequent hepatocellular carcinoma immune escape: a proteomic study
Weng YQ, Qiu SJ, Liu YK, Fan J, Gao Q, Tang ZY.
J Cancer Res Clin Oncol Early Edition: published 7-Jul-2007
Proteomics Analysis of Human Amniotic Fluid
Chan-Kyung J. Cho, Shannon J. Shan, Elizabeth J. Winsor, and Eleftherios P. Diamandis
Mol Cell Proteomics (2007) 6(8): 1406-1415
Review: New perspectives and strategy research biomarkers for hepatocellular carcinoma
Saffroy R, Pham P, Reffas M, Takka M, Lemoine A, Debuire B.
Clin Chem Lab Med Early Edition: published 19-Jul-2007
Proteomic Analysis of Wheat Flour Allergens
Akagawa M, Handoyo T, Ishii T, Kumazawa S, Morita N, Suyama K.
J Agric Food Chem (2007) 55(17): 6863-6870
Diagnostic Potential of Urine Proteome: A Broken Mirror of Renal Diseases
Goligorsky MS, Addabbo F, O'riordan E.
J Am Soc Nephrol (2007) 18(8): 2233-9
Proteomic identification of down-regulation of oncoprotein DJ-1 and proteasome activator subunit 1 in hepatitis B virus-infected well-differentiated hepatocellular carcinoma
Zhang D, Lim SG, Koay ES.
Int J Oncol (2007) 31(3): 577-84
Searchable High-Resolution 2D Gel Proteome of the Human Colon Crypt
B.B. Patel, X.-M. Li, M.P. Dixon, E.L. Blagoi, S.H. Seeholzer, Y. Chen, C.G. Miller, Y.A. He, M. Tetruashvily, A.H. Chaudhry, E. Ke, J. Xie, H. Cooper, A. Bellacosa, M.L. Clapper, B.M. Boman, T. Zhang, S. Litwin, E.A. Ross, P. Conrad, J.A. Cowell, L. Kopelovich, A. Knudson, A.T. Yeung
Journal of Proteome Research (2007) 6(6): 2232-2238
Neuroproteomics: the hunt for biomarkers of neurotrauma. Andrew Ottens talks to Nicole Nogoy
Nogoy N
Expert Rev Proteomics (2007) 4(3): 343-5
Biomarker discovery with SELDI-TOF MS in human urine associated with early renal injury: evaluation with computational analytical tools
Vanhoutte KJ, Laarakkers C, Marchiori E, Pickkers P, Wetzels JF, Willems JL, van den Heuvel LP, Russel FG, Masereeuw R.
Nephrol Dial Transplant Early Edition: published 5-Jul-2007
Diagnosis of esophageal adenocarcinoma by serum proteomic pattern
Hammoud ZT, Dobrolecki L, Kesler KA, Rahmani E, Rieger K, Malkas LH, Hickey RJ.
Ann Thorac Surg (2007) 84(2): 384-92; discussion 392
Decreased hippocampal cholinergic neurostimulating peptide precursor protein associated with stress exposure in rat brain by proteomic analysis
Kim HG, Kim KL.
J Neurosci Res Early Edition: published 12-Jul-2007
Cochlin in the eye: Functional implications
Picciani R, Desai K, Guduric-Fuchs J, Cogliati T, Morton CC, Bhattacharya SK.
Prog Retin Eye Res Early Edition: published 22-Jun-2007
Serum Proteomic Patterns as a Predictor of Severity in Acute Pancreatitis
Papachristou GI, Malehorn DE, Lamb J, Slivka A, Bigbee WL, Whitcomb DC.
Pancreatology (2007) 7(4): 317-324
Advances in proteomics in cancer research
Joos TO
Expert Rev Proteomics (2007) 4(3): 347-9
What have we learned from mouse models for cystic fibrosis?
Carvalho-Oliveira I, Scholte BJ, Penque D.
Expert Rev Mol Diagn (2007) 7(4): 407-417
Urinary biomarkers of IgA nephropathy and other IgA-associated renal diseases
Julian BA, Wittke S, Haubitz M, Zurbig P, Schiffer E, McGuire BM, Wyatt RJ, Novak J.
World J Urol Early Edition: published 10-Jul-2007
Target proteins of C/EBP{alpha}-p30 in AML: C/EBP{alpha}-p30 enhances Sumoylation of C/EBP{alpha}-p42 via up regulation of Ubc9
Geletu M, Balkhi MY, Peer Zada AA, Christopeit M, Anto Pulikkan J, Kumar Trivedi A, Tenen DG, Behre G.
Blood Early Edition: published 1-Aug-2007
Classification of pancreatic cystic lesions using seldi-tof mass spectrometry
Scarlett CJ, Samra JS, Xue A, Baxter RC, Smith RC.
ANZ J Surg (2007) 77(8): 648-53
Comparative Time-Dependent Analysis of Potential Inflammation Biomarkers in Lymphoma-Bearing SJL Mice
M.H. Kristiansson, V.B. Bhat, I.R. Babu, J.S. Wishnok, S.R. Tannenbaum
Journal of Proteome Research (2007) 6(5): 1735-1744
S100A8 Is Identified as a Biomarker of HPV18-Infected Oral Squamous Cell Carcinomas by Suppression Subtraction Hybridization, Clinical Proteomics Analysis, and Immunohistochemistry Staining
W.-Y. Lo, C.-C. Lai, C.-H. Hua, M.-H. Tsai, S.-Y. Huang, C.-H. Tsai, F.-J. Tsai
Journal of Proteome Research (2007) 6(6): 2143-2151
Proteomic analysis of saliva for cancer diagnosis
Streckfus CF, Dubinsky WP
Expert Rev Proteomics (2007) 4(3): 329-32
Application of proteomics to posttransplantational follow-up
Weissinger EM, Mischak H.
Methods Mol Med (2007) 134: 217-28
Proteomic approach for purification of seminal plasma proteins involved in tumor proliferation
Hassan MI, Kumar V, Kashav T, Alam N, Singh TP, Yadav S.
J Sep Sci (2007) 30(12): 1979-88
Oncoproteomics: current trends and future perspectives
Cho WC, Cheng CH
Expert Rev Proteomics (2007) 4(3): 401-10
Proteomics of human spermatozoa, protamine content and assisted reproduction outcome
Oliva R, Martinez-Heredia J, de Mateo S, Gazquez C, Oriola J, Estanyo JM, Guimera M, Balasch J, Ballesca JL.
Soc Reprod Fertil Suppl (2007) 65: 527-30
Dynamic proteomics in mammalian cells: capabilities and challenges
Milo R.
Mol Biosyst (2007) 3(8): 542-6
Impact of solar Ultraviolet-B on the proteome in soybean lines differing in flavonoid contents
Xu C, Sullivan JH, Garrett WM, Caperna TJ, Natarajan S.
Phytochemistry Early Edition: published 21-Jul-2007
Saliva: a dynamic proteome
Helmerhorst EJ, Oppenheim FG.
J Dent Res (2007) 86(8): 680-93
Bovine germinal vesicle oocyte and cumulus cell proteomics
Memili E, Peddinti D, Shack LA, Nanduri B, McCarthy F, Sagirkaya H, Burgess SC.
Reproduction (2007) 133(6): 1107-1120
Analysis of the vacuolar luminal proteome of Saccharomyces cerevisiae
Sarry JE, Chen S, Collum RP, Liang S, Peng M, Lang A, Naumann B, Dzierszinski F, Yuan CX, Hippler M, Rea PA.
FEBS J (2007) 274(16): 4287-305
PROTEOME ANALYSIS OF CULTIVATED VASCULAR SMOOTH MUSCLE CELLS FROM A CADASIL PATIENT: Proteome analysis of CADASIL vascular smooth muscle cells
Ihalainen S, Soliymani R, Iivanainen E, Mykkanen K, Sainio A, Poyhonen M, Elenius K, Jarvelainen H, Viitanen M, Kalimo H, Baumann M.
Mol Med (2007) 13(5-6): 305-14
Effects of hindlimb unloading and bisphosphonates on the serum proteome of rats
Zhao Y, Fleet JC, Adamec J, Terry DE, Zhang X, Kemeh S, Davisson VJ, Weaver CM.
Bone Early Edition: published 15-Jun-2007
Proteomic analysis of Schistosoma mansoni egg secretions
Cass CL, Johnson JR, Califf LL, Xu T, Hernandez HJ, Stadecker MJ, Yates JR 3rd, Williams DL.
Mol Biochem Parasitol (2007) 155(2): 84-93
The distinct proteome of placental malaria parasites
Fried M, Hixson KK, Anderson L, Ogata Y, Mutabingwa TK, Duffy PE.
Mol Biochem Parasitol (2007) 155(1): 57-65
Shotgun proteomic analysis of Arabidopsis thaliana leaves
Lee J, Garrett WM, Cooper B.
J Sep Sci (2007) 30(14): 2225-30
Proteomics Analysis of the Nacre Soluble and Insoluble Proteins from the Oyster Pinctada margaritifera
Bedouet L, Marie A, Dubost L, Peduzzi J, Duplat D, Berland S, Puissegur M, Boulzaguet H, Rousseau M, Milet C, Lopez E.
Mar Biotechnol (NY) Early Edition: published 21-Jul-2007
Genomic and proteomic characterization of embryonic stem cells
Stanton LW, Bakre MM.
Curr Opin Chem Biol (2007) 11(4): 399-404
Proteomic studies of an Antarctic cold-adapted bacterium, Shewanella livingstonensis Ac10, for global identification of cold-inducible proteins
Kawamoto J, Kurihara T, Kitagawa M, Kato I, Esaki N.
Extremophiles Early Edition: published 7-Jul-2007
Peptide mass fingerprinting- and 2-DE/MS-based analysis of the biodegradation potential for monocyclic aromatic hydrocarbons in Pseudomonas sp
Kim SI, Park SH, Kim JW, Leem SH, Shin DJ, Kim SH, Lee DH, Kahng HY.
Biotechnol Lett (2007) 29(10): 1475-81
Growth phase-associated changes in the transcriptome and proteome of Streptococcus pyogenes
Chaussee MA, Dmitriev AV, Callegari EA, Chaussee MS.
Arch Microbiol Early Edition: published 31-Jul-2007
In Situ Detection of Phosphorylated Platelet-derived Growth Factor Receptor {beta} Using a Generalized Proximity Ligation Method
Malin Jarvius, Janna Paulsson, Irene Weibrecht, Karl-Johan Leuchowius,Ann-Catrin Andersson, Carolina Wahlby, Mats Gullberg, Johan Botling, Tobias Sjoblom, Boyka Markova, Arne Ostman, Ulf Landegren, and Ola Soderberg
Mol Cell Proteomics (2007) 6(9): 1500-1509
Comparative proteomics of cell division mutants and wild-type of Synechococcus sp. strain PCC 7942
Koksharova OA, Klint J, Rasmussen U.
Microbiology (2007) 153(Pt 8): 2505-2517
Physiological Response and Protein Expression under Acid Stress of Escherichia coli O157:H7 TWC01 Isolated from Taiwan
Huang YJ, Tsai TY, Pan TM.
J Agric Food Chem (2007) 55(17): 7182-91
A proteomic approach to study Salmonella enterica serovar Typhimurium putative transporter YjeH associated with ceftriaxone resistance
Hu WS, Lin YH, Shih CC.
Biochem Biophys Res Commun Early Edition: published 25-Jul-2007
The proteome of the heterocyst cell wall in Anabaena sp. PCC 7120
Moslavac S, Reisinger V, Berg M, Mirus O, Vosyka O, Ploscher M, Flores E, Eichacker LA, Schleiff E.
Biol Chem (2007) 388(8): 823-9
Global View of the Clostridium thermocellum Cellulosome Revealed by Quantitative Proteomic Analysis
Gold ND, Martin VJ.
J Bacteriol Early Edition: published 20-Jul-2007
Comparative Proteomic Analysis of Virulent Korean Mycobacterium tuberculosis K-strain with Other Mycobacteria Strain Following Infection of U-937 Macrophage
Ryoo SW, Park YK, Park SN, Shim YS, Liew H, Kang S, Bai GH.
J Microbiol (2007) 45(3): 268-71
Proteomic Analysis of Rat Prefrontal Cortex in Three Phases of Morphine-Induced Conditioned Place Preference
L. Yang, Z.S. Sun, Y.-p. Zhu
Journal of Proteome Research (2007) 6(6): 2239-2247
Screening of Serum Biomarkers and Establishment of a Decision Tree in Silica-Exposed Populations by Surface-Enhanced Laser Desorption Ionization Time-of-Fly Mass Spectrometry
Wang SX, Zhao XF, Wei MT, Wu Y, Zeng JW, Liang XC, Yi JH, He B, Tu ZG.
J Occup Environ Med (2007) 49(7): 764-770
iTRAQ-Coupled 2D LC-MS/MS Analysis on Protein Profile in Vascular Smooth Muscle Cells Incubated with S- and R-Enantiomers of Propranolol: Possible Role of Metabolic Enzymes Involved in Cellular Anabolism and Antioxidant Activity
J. Sui, T.L. Tan, J. Zhang, C.B. Ching, W.N. Chen
Journal of Proteome Research (2007) 6(5): 1643-1651
Glycoprotein Microarrays with Multi-Lectin Detection: Unique Lectin Binding Patterns as a Tool for Classifying Normal, Chronic Pancreatitis and Pancreatic Cancer Sera
J. Zhao, T.H. Patwa, W. Qiu, K. Shedden, R. Hinderer, D.E. Misek, M.A. Anderson, D.M. Simeone, D.M. Lubman
Journal of Proteome Research (2007) 6(5): 1864-1874
Discontinuous native protein gel electrophoresis: pros and cons
Niepmann M
Expert Rev Proteomics (2007) 4(3): 355-61
Screening of Serum Biomarkers and Establishment of a Decision Tree in Silica-Exposed Populations by Surface-Enhanced Laser Desorption Ionization Time-of-Fly Mass Spectrometry
Wang SX, Zhao XF, Wei MT, Wu Y, Zeng JW, Liang XC, Yi JH, He B, Tu ZG.
J Occup Environ Med (2007) 49(7): 764-770
Activity-based proteomics of lipolytic enzymes
Birner-Gruenberger R, Hermetter A.
Curr Drug Discov Technol (2007) 4(1): 1-11
Nanocrystal-Encoded Fluorescent Microbeads for Proteomics: Antibody Profiling and Diagnostics of Autoimmune Diseases
Sukhanova A, Susha AS, Bek A, Mayilo S, Rogach AL, Feldmann J, Oleinikov V, Reveil B, Donvito B, Cohen JH, Nabiev I.
Nano Lett (2007) 7(8): 2322-2327
Unbiased identification of cysteine S-nitrosylation sites on proteins
Derakhshan B, Wille PC, Gross SS.
Nat Protoc (2007) 2(7): 1685-91
GANNPhos: a new phosphorylation site predictor based on a genetic algorithm integrated neural network
Tang YR, Chen YZ, A Canchaya C, Zhang Z.
Protein Eng Des Sel Early Edition: published 24-Jul-2007
Mining Phosphopeptide Signals in Liquid Chromatography-Mass Spectrometry Data for Protein Phosphorylation Analysis
H.-Y. Wu, V.S.-M. Tseng, P.-C. Liao
Journal of Proteome Research (2007) 6(5): 1812-1821
Immobilized Zirconium Ion Affinity Chromatography for Specific Enrichment of Phosphopeptides in Phosphoproteome Analysis
Shun Feng, Mingliang Ye, Houjiang Zhou, Xiaogang Jiang, Xingning Jiang, Hanfa Zou, and Bolin Gong
Mol Cell Proteomics (2007) 6(9): 1656-1665
Increased Coverage in the Transmembrane Domain with Activated-Ion Electron Capture Dissociation for Top-Down Fourier-Transform Mass Spectrometry of Integral Membrane Proteins
V. Zabrouskov, J.P. Whitelegge
Journal of Proteome Research (2007) 6(6): 2205-2210
Reference-facilitated Phosphoproteomics: FAST AND RELIABLE PHOSPHOPEPTIDE VALIDATION BY {micro}LC-ESI-Q-TOF MS/MS
Susumu Y. Imanishi, Vitaly Kochin, Saima E. Ferraris, Aurelie de Thonel, Hanna-Mari Pallari, Garry L. Corthals, and John E. Eriksson
Mol Cell Proteomics (2007) 6(8): 1380-1391
Surface Accessibility of Protein Post-Translational Modifications
C.N.I. Pang, A. Hayen, M.R. Wilkins
Journal of Proteome Research (2007) 6(5): 1833-1845
Protein phosphorylation analysis by site-specific arginine-mimic labeling in gel electrophoresis and matrix-assisted laser desorption/ionization time-of-flight mass spectrometry
Ahn YH, Ji ES, Kwon KH, Lee JY, Cho K, Kim JY, Kang HJ, Kim HG, Yoo JS.
Anal Biochem Early Edition: published 22-Jun-2007
Large-Scale Identification of N-Terminal Peptides in the Halophilic Archaea Halobacterium salinarum and Natronomonas pharaonis
M. Aivaliotis, K. Gevaert, M. Falb, A. Tebbe, K. Konstantinidis, B. Bisle, C. Klein, L. Martens, A. Staes, E. Timmerman, J. VanDamme, F. Siedler, F. Pfeiffer, J. Vandekerckhove, D. Oesterhelt
Journal of Proteome Research (2007) 6(6): 2195-2204
Mass Spectrometric Analysis of High-Mobility Group Proteins and Their Post-Translational Modifications in Normal and Cancerous Human Breast Tissues
Y. Zou, Y. Wang
Journal of Proteome Research (2007) 6(6): 2304-2314
Quantitative phosphoproteomic analysis of plasma membrane proteins reveals regulatory mechanisms of plant innate immune responses
Nuhse TS, Bottrill AR, Jones AM, Peck SC.
Plant J (2007) 51(5): 931-40
The in Vivo Phosphorylation and Glycosylation of Human Insulin-like Growth Factor-binding Protein-5
Mark E. Graham, Dean M. Kilby, Sue M. Firth, Phillip J. Robinson, and Robert C. Baxter
Mol Cell Proteomics (2007) 6(8): 1392-1405
Quantitation of target proteins and post-translational modifications in affinity-based proteomics approaches
Kiernan UA
Expert Rev Proteomics (2007) 4(3): 421-8
Mass Spectrometry-Based Approaches for Structural Studies on Protein Complexes at Low-Resolution
Giovanni Renzone, Anna Maria Salzano, Simona Arena, Chiara DAmbrosio, Andrea Scaloni
Current Proteomics (2007) 4(1): 1-16
Phosphorylation of CDC25C at S263 controls its intracellular localisation
Esmenjaud-Mailhat C, Lobjois V, Froment C, Golsteyn RM, Monsarrat B, Ducommun B.
FEBS Lett Early Edition: published 23-Jul-2007
Enhanced a1 Fragmentation for Dimethylated Proteins and Its Applications for N-Terminal Identification and Comparative Protein Quantitation
J.-L. Hsu, S.-H. Chen, D.-T. Li, F.-K. Shi
Journal of Proteome Research (2007) 6(6): 2376-2383
Characterization of Phosphorylation Sites on Tpl2 Using IMAC Enrichment and a Linear Ion Trap Mass Spectrometer
T.M. Black, C.L. Andrews, G. Kilili, M. Ivan, P.N. Tsichlis, P. Vouros
Journal of Proteome Research (2007) 6(6): 2269-2276
On studying protein phosphorylation patterns using bottom-up LC-MS/MS: the case of human alpha-casein
Kjeldsen F, Savitski MM, Nielsen ML, Shi L, Zubarev RA.
Analyst (2007) 132(8): 768-76
The Implications of Proteolytic Background for Shotgun Proteomics
Paola Picotti, Ruedi Aebersold, and Bruno Domon
Mol Cell Proteomics (2007) 6(9): 1589-1598
Glycomics Analysis of Schistosoma mansoni Egg and Cercarial Secretions
Jihye Jang-Lee, Rachel S. Curwen, Peter D. Ashton, Berangere Tissot, William Mathieson, Maria Panico, Anne Dell, R. Alan Wilson, and Stuart M. Haslam
Mol Cell Proteomics (2007) 6(9): 1485-1499
Quantitative Glycomics of Human Whole Serum Glycoproteins Based on the Standardized Protocol for Liberating N-Glycans
Yoko Kita, Yoshiaki Miura, Jun-ichi Furukawa, Mika Nakano, Yasuro Shinohara, Masahiro Ohno, Akio Takimoto, and Shin-Ichiro Nishimura
Mol Cell Proteomics (2007) 6(8): 1437-1445
Conformational States and Protein Stability from a Proteomic Perspective
Vesna Prosinecki, Patricia FN Faisca, Claudio M Gomes
Current Proteomics (2007) 4(1): 44-52
Proteome and Phosphoproteome Differential Expression under Salinity Stress in Rice (Oryza sativa) Roots
B.R. Chitteti, Z. Peng
Journal of Proteome Research (2007) 6(5): 1718-1727
Prediction of cyclin-dependent kinase phosphorylation substrates
Chang EJ, Begum R, Chait BT, Gaasterland T.
PLoS ONE (2007) 2: e656.
Enrichment and Analysis of Nonenzymatically Glycated Peptides: Boronate Affinity Chromatography Coupled with Electron-Transfer Dissociation Mass Spectrometry
Q. Zhang, N. Tang, J.W.C. Brock, H.M. Mottaz, J.M. Ames, J.W. Baynes, R.D. Smith, T.O. Metz
Journal of Proteome Research (2007) 6(6): 2323-2330
A Method for Selective Enrichment and Analysis of Nitrotyrosine-Containing Peptides in Complex Proteome Samples
Q. Zhang, W.-J. Qian, T.V. Knyushko, T.R.W. Clauss, S.O. Purvine, R.J. Moore, C.A. Sacksteder, M.H. Chin, D.J. Smith, D.G. Camp, D.J. Bigelow, R.D. Smith
Journal of Proteome Research (2007) 6(6): 2257-2268
Probing the Membrane Interface-Interacting Proteome Using Photoactivatable Lipid Cross-Linkers
J. Gubbens, P. Vader, J.M.A. Damen, M.C. O'Flaherty, M. Slijper, B. deKruijff, A.I.P.M. deKroon
Journal of Proteome Research (2007) 6(5): 1951-1962
Functional specialization of {beta}-arrestin interactions revealed by proteomic analysis
Xiao K, McClatchy DB, Shukla AK, Zhao Y, Chen M, Shenoy SK, Yates JR 3rd, Lefkowitz RJ.
Proc Natl Acad Sci U S A (2007) 104(29): 12011-6
Detection of Protein-Protein Interactions Using Protein-Fragment Complementation Assays (PCA)
Emma Barnard, Neil V McFerran, John Nelson, David J Timson
Current Proteomics (2007) 4(1): 17-27
A proteome-wide protein interaction map for Campylobacter jejuni
Parrish JR, Yu J, Liu G, Hines JA, Chan JE, Mangiola BA, Zhang H, Pacifico S, Fotouhi F, Dirita VJ, Ideker T, Andrews P, Finley RL Jr
Genome Biol (2007) 8(7): R130
Human Serum Albumin-Mercurial Species Interactions
Y. Li, X.-P. Yan, C. Chen, Y.-L. Xia, Y. Jiang
Journal of Proteome Research (2007) 6(6): 2277-2286
An Experimentally Derived Database of Candidate Ras-Interacting Proteins
L.E. Goldfinger, C. Ptak, E.D. Jeffery, J. Shabanowitz, J. Han, J.R. Haling, N.E. Sherman, J.W. Fox, D.F. Hunt, M.H. Ginsberg
Journal of Proteome Research (2007) 6(5): 1806-1811
Characterization of Molecular Recognition Features, MoRFs, and Their Binding Partners
V. Vacic, C.J. Oldfield, A. Mohan, P. Radivojac, M.S. Cortese, V.N. Uversky, A.K. Dunker
Journal of Proteome Research (2007) 6(6): 2351-2366
Quantitative Profile of Five Murine Core Proteomes Using Label-free Functional Proteomics
Pedro R. Cutillas and Bart Vanhaesebroeck
Mol Cell Proteomics (2007) 6(9): 1560-1573
The Association of Biomolecular Resource Facilities Proteomics Research Group 2006 Study: Relative Protein Quantitation
Christoph W. Turck, Arnold M. Falick, Jeffrey A. Kowalak, William S. Lane, Kathryn S. Lilley, Brett S. Phinney, Susan T. Weintraub, H. Ewa Witkowska, and Nathan A. Yates
Mol Cell Proteomics (2007) 6(8): 1291-1298
15N Metabolic Labeling of Mammalian Tissue with Slow Protein Turnover
D.B. McClatchy, M.-Q. Dong, C.C. Wu, J.D. Venable, J.R. Yates
Journal of Proteome Research (2007) 6(5): 2005-2010
Quantitative Mass Spectrometry Identifies Insulin Signaling Targets in C. elegans
Dong MQ, Venable JD, Au N, Xu T, Park SK, Cociorva D, Johnson JR, Dillin A, Yates JR 3rd.
Science (2007) 317(5838): 660-3
Experimental and Statistical Considerations to Avoid False Conclusions in Proteomics Studies Using Differential In-gel Electrophoresis
Natasha A. Karp, Paul S. McCormick, Matthew R. Russell, and Kathryn S.Lilley
Mol Cell Proteomics (2007) 6(8): 1354-1364
Quantitative mass spectrometry in proteomics: a critical review
Bantscheff M, Schirle M, Sweetman G, Rick J, Kuster B.
Anal Bioanal Chem Early Edition: published 1-Aug-2007
Quantitative phosphoproteomic analysis of plasma membrane proteins reveals regulatory mechanisms of plant innate immune responses
Nuhse TS, Bottrill AR, Jones AM, Peck SC.
Plant J (2007) 51(5): 931-40
Absolute Multiplexed Quantitative Analysis of Protein Expression during Muscle Development Using QconCAT
Jenny Rivers, Deborah M. Simpson, Duncan H. L. Robertson, Simon J. Gaskell, and Robert J. Beynon
Mol Cell Proteomics (2007) 6(8): 1416-1427
Neuroproteomics: the hunt for biomarkers of neurotrauma. Andrew Ottens talks to Nicole Nogoy
Nogoy N
Expert Rev Proteomics (2007) 4(3): 343-5
Crop proteomics: Aim at sustainable agriculture of tomorrow
Ghasem Hosseini Salekdeh, Setsuko Komatsu
PROTEOMICS (2007) 7(16): 2976-2996
Gastrointestinal fluids proteomics
Sandra Tan, Cynthia R. M. Y. Liang, Khay Guan Yeoh, Jimmy So, Choy Leong Hew, Maxey C. M. Chung
PROTEOMICS - CLINICAL APPLICATIONS (2007) 1(8): 820-833
Advances in proteomics in cancer research
Joos TO
Expert Rev Proteomics (2007) 4(3): 347-9
Discontinuous native protein gel electrophoresis: pros and cons
Niepmann M
Expert Rev Proteomics (2007) 4(3): 355-61
What have we learned from mouse models for cystic fibrosis?
Carvalho-Oliveira I, Scholte BJ, Penque D.
Expert Rev Mol Diagn (2007) 7(4): 407-417
Bayesian methods for proteomics
Gil Alterovitz, Jonathan Liu, Ehsan Afkhami, Marco F. Ramoni
PROTEOMICS (2007) 7(16): 2843-2855
From ?protein? to the beginnings of clinical proteomics
David Perrett
PROTEOMICS - CLINICAL APPLICATIONS (2007) 1(8): 720-738
Microdissecting the proteome
Ferdinand von Eggeling, Christian Melle, Günther Ernst
PROTEOMICS (2007) 7(16): 2729-2737
Proteomic analysis of human reproductive fluids
Aggeliki Kolialexi, Ariadni Mavrou, George Th. Tsangaris
PROTEOMICS - CLINICAL APPLICATIONS (2007) 1(8): 853-860
Oncoproteomics: current trends and future perspectives
Cho WC, Cheng CH
Expert Rev Proteomics (2007) 4(3): 401-10
The human synovial fluid proteome: A key factor in the pathology of joint disease
David S. Gibson, Madeleine E. Rooney
PROTEOMICS - CLINICAL APPLICATIONS (2007) 1(8): 889-899
Serum and Plasma Proteomics
Issaq HJ, Xiao Z, Veenstra TD.
Chem Rev (2007) 107(8): 3601-20
Discovering functions and revealing mechanisms at molecular level from biological networks
Shihua Zhang, Guangxu Jin, Xiang-Sun Zhang, Luonan Chen
PROTEOMICS (2007) 7(16): 2856-2869
Quantitation of target proteins and post-translational modifications in affinity-based proteomics approaches
Kiernan UA
Expert Rev Proteomics (2007) 4(3): 421-8
Piecing together the structure-function puzzle: Experiences in structure-based functional annotation of hypothetical proteins
Melanie A. Adams, Michael D. L. Suits, Jimin Zheng, Zongchao Jia
PROTEOMICS (2007) 7(16): 2920-2932
The analysis of Neisseria meningitidis proteomes: Reference maps and their applications
Giulia Bernardini, Daniela Braconi, Annalisa Santucci
PROTEOMICS (2007) 7(16): 2933-2946
Proteomics in ocular fluids
Franz H. Grus, Stephanie C. Joachim, Norbert Pfeiffer
PROTEOMICS - CLINICAL APPLICATIONS (2007) 1(8): 876-888
Subcellular shotgun proteomics in plants: Looking beyond the usual suspects
Paul A. Haynes, Thomas H. Roberts
PROTEOMICS (2007) 7(16): 2963-2975
Methods for the detection and analysis of protein-protein interactions
Tord Berggård, Sara Linse, Peter James
PROTEOMICS (2007) 7(16): 2833-2842
Proteomics of human cerebrospinal fluid - the good, the bad, and the ugly
Jing Zhang
PROTEOMICS - CLINICAL APPLICATIONS (2007) 1(8): 805-819
Quantitative mass spectrometry in proteomics: a critical review
Bantscheff M, Schirle M, Sweetman G, Rick J, Kuster B.
Anal Bioanal Chem Early Edition: published 1-Aug-2007
Applications of field-flow fractionation in proteomics: Presence and future
Josef Chmelik
PROTEOMICS (2007) 7(16): 2719-2728
NMR-based metabolomics approach to target biomarkers for human prostate cancer
Jordan KW, Cheng LL
Expert Rev Proteomics (2007) 4(3): 389-400
Proteomics of nipple aspirate fluid, breast cyst fluid, milk, and colostrum
Rachel L. Ruhlen, Edward R. Sauter
PROTEOMICS - CLINICAL APPLICATIONS (2007) 1(8): 845-852
A la carte proteomics with an emphasis on gel-free techniques
Kris Gevaert, Petra Van Damme, Bart Ghesquière, Francis Impens, Lennart Martens, Kenny Helsens, Joël Vandekerckhove
PROTEOMICS (2007) 7(16): 2698-2718
Protein abundance ratios for global studies of prokaryotes
Qiangwei Xia, Erik L. Hendrickson, Tiansong Wang, Richard J. Lamont, John A. Leigh, Murray Hackett
PROTEOMICS (2007) 7(16): 2904-2919
Review: New perspectives and strategy research biomarkers for hepatocellular carcinoma
Saffroy R, Pham P, Reffas M, Takka M, Lemoine A, Debuire B.
Clin Chem Lab Med Early Edition: published 19-Jul-2007
Impact of preanalytical variables on the analysis of biological fluids in proteomic studies
Roisean E. Ferguson, Denis F. Hochstrasser, Rosamonde E. Banks
PROTEOMICS - CLINICAL APPLICATIONS (2007) 1(8): 739-746
Mining the low molecular weight proteome of blood
Richard R. Drake, Lisa Cazares, O. John Semmes
PROTEOMICS - CLINICAL APPLICATIONS (2007) 1(8): 758-768
Proteomic analysis of bone cancer: a review of current and future developments
Bhattacharyya S, Byrum S, Siegel ER, Suva LJ
Expert Rev Proteomics (2007) 4(3): 371-8
Plant proteome analysis: A 2006 update
Jesús V. Jorrín, Ana M. Maldonado, Ma Angeles Castillejo
PROTEOMICS (2007) 7(16): 2947-2962
Methods, algorithms and tools in computational proteomics: A practical point of view
Rune Matthiesen
PROTEOMICS (2007) 7(16): 2815-2832
Public proteomic MS repositories and pipelines: available tools and biological applications
Jennifer A. Mead, Ian P. Shadforth, Conrad Bessant
PROTEOMICS (2007) 7(16): 2769-2786
The ins and outs of lipid domain proteomics
Richard R. Sprenger, Anton J. G. Horrevoets
PROTEOMICS (2007) 7(16): 2895-2903
Mammalian plasma membrane proteomics
Djuro Josic, James G. Clifton
PROTEOMICS (2007) 7(16): 3010-3029
Analysis of protein phosphorylation on a proteome-scale
Mark O. Collins, Lu Yu, Jyoti S. Choudhary
PROTEOMICS (2007) 7(16): 2751-2768
Recent progress in urinary proteomics
Visith Thongboonkerd
PROTEOMICS - CLINICAL APPLICATIONS (2007) 1(8): 780-791
Proteomics analysis of serous fluids and effusions: Pleural, pericardial, and peritoneal
Yu-Chang Tyan, Pao-Chi Liao
PROTEOMICS - CLINICAL APPLICATIONS (2007) 1(8): 834-844
Proteomic analysis of serum, plasma, and lymph for the identification of biomarkers
Zhaojing Meng, Timothy D. Veenstra
PROTEOMICS - CLINICAL APPLICATIONS (2007) 1(8): 747-757
Proteomics and the human metabolome project
Wishart DS
Expert Rev Proteomics (2007) 4(3): 333-5
Role of proteomics in the investigation of pulmonary fibrosis
Govender P, Baugh JA, Pennington SR, Dunn MJ, Donnelly SC
Expert Rev Proteomics (2007) 4(3): 379-88
Proteomics of semen and its constituents
Mark W. Duncan, Heather S. Thompson
PROTEOMICS - CLINICAL APPLICATIONS (2007) 1(8): 861-875
Using bioinformatic resources in the proteomic analysis of biological fluids
Frédérique Lisacek, Christine Hoogland, Pierre Lescuyer, Denis F. Hochstrasser, Ron D. Appel
PROTEOMICS - CLINICAL APPLICATIONS (2007) 1(8): 900-915
Proteomic analysis of protein complexes
Ming Zhou, Timothy D. Veenstra
PROTEOMICS (2007) 7(16): 2688-2697
Biological Fluids - Reservoirs of Information
Roz Banks
PROTEOMICS - CLINICAL APPLICATIONS (2007) 1(8): 717-718
Capture and analysis of quantitative proteomic data
King Wai Lau, Andrew R. Jones, Neil Swainston, Jennifer A. Siepen, Simon J. Hubbard
PROTEOMICS (2007) 7(16): 2787-2799
High-resolution proteome/peptidome analysis of peptides and low-molecular-weight proteins in urine
Harald Mischak, Bruce A. Julian, Jan Novak
PROTEOMICS - CLINICAL APPLICATIONS (2007) 1(8): 792-804
PROTEOMICS Reviews 2007
Michael J. Dunn
PROTEOMICS (2007) 7(16): 2683-2686
Computational prediction of proteotypic peptides
Blonder J, Veenstra TD
Expert Rev Proteomics (2007) 4(3): 351-4
Plasma/serum proteomics: pre-analytical issues
Barelli S, Crettaz D, Thadikkaran L, Rubin O, Tissot JD
Expert Rev Proteomics (2007) 4(3): 363-70
Proteome of mesenchymal stem cells
Hye Won Park, Jun-Seop Shin, Chan-Wha Kim
PROTEOMICS (2007) 7(16): 2881-2894
Proteomic applications of automated GPCR classification
Matthew N. Davies, David E. Gloriam, Andrew Secker, Alex A. Freitas, Miguel Mendao, Jon Timmis, Darren R. Flower
PROTEOMICS (2007) 7(16): 2800-2814
Proteoglycanomics: tools to unravel the biological function of glycosaminoglycans
Bernd Gesslbauer, Angelika Rek, Fabio Falsone, Erich Rajkovic, Andreas J. Kungl
PROTEOMICS (2007) 7(16): 2870-2880
Affinity reagent resources for human proteome detection: Initiatives and perspectives
Oda Stoevesandt, Michael J. Taussig
PROTEOMICS (2007) 7(16): 2738-2750
Proteomic analysis of saliva for cancer diagnosis
Streckfus CF, Dubinsky WP
Expert Rev Proteomics (2007) 4(3): 329-32
Proteomic applications in ecotoxicology
Tiphaine Monsinjon, Thomas Knigge
PROTEOMICS (2007) 7(16): 2997-3009
Analysis of inflammatory biomarkers from tissue biopsies by chip-based immunoaffinity CE
Terry M. Phillips, Edward F. Wellner
ELECTROPHORESIS (2007) 28(17): 3041-3048
On-Line 1D and 2D Porous Layer Open Tubular/LC-ESI-MS Using 10-mum-i.d. Poly(styrene-divinylbenzene) Columns for Ultrasensitive Proteomic Analysis
Luo Q, Yue G, Valaskovic GA, Gu Y, Wu SL, Karger BL.
Anal Chem (2007) 79(16): 6174-81
Timing of blood extraction in epidemiologic and proteomic studies: results and proposals from the PANKRAS II Study
Porta M, Pumarega J, Ferrer-Armengou O, Lopez T, Alguacil J, Malats N, Fernandez E.
Eur J Epidemiol Early Edition: published 18-Jul-2007
Assessing a novel microfluidic interface for shotgun proteome analyses
Staes A, Timmerman E, Van Damme J, Helsens K, Vandekerckhove J, Vollmer M, Gevaert K.
J Sep Sci (2007) 30(10): 1468-76
Microchip Reactor Packed with Metal-Ion Chelated Magnetic Silica Microspheres for Highly Efficient Proteolysis
Y. Li, X. Xu, B. Yan, C. Deng, W. Yu, P. Yang, X. Zhang
Journal of Proteome Research (2007) 6(6): 2367-2375
Membrane Proteomic Analysis of Arabidopsis thaliana Using Alternative Solubilization Techniques
S.K. Mitra, J.A. Gantt, J.F. Ruby, S.D. Clouse, M.B. Goshe
Journal of Proteome Research (2007) 6(5): 1933-1950
Development of novel guanidino-labelling derivatisation (GLaD) reagents for liquid chromatography/matrix-assisted laser desorption/ionisation analysis
Francesco L. Brancia, Jessica Z. Bereszczak, Elzbieta Piatkowska, Daniela Delneri
Rapid Communications in Mass Spectrometry (2007) 21(18): 3069-3076
Proteomics-Based Method for the Assessment of Marine Pollution Using Liquid Chromatography Coupled with Two-Dimensional Electrophoresis
H. Amelina, I. Apraiz, W. Sun, S. Cristobal
Journal of Proteome Research (2007) 6(6): 2094-2104
An Immuno-PF2D-MS/MS Proteomic Approach for Bacterial Antigenic Characterization: To Bacillus and Beyond
V. Ruelle, N. Falisse-Poirrier, B. ElMoualij, D. Zorzi, O. Pierard, E. Heinen, E. DePauw, W. Zorzi
Journal of Proteome Research (2007) 6(6): 2168-2175
Investigation of sample-purification procedures for MALDI-based proteomic studies
Andre M, Karas M.
Anal Bioanal Chem Early Edition: published 1-Aug-2007
Comparing SILAC and Two-Dimensional Gel Electrophoresis Image Analysis for Profiling Urokinase Plasminogen Activator Signaling in Ovarian Cancer Cells
P.M. Uitto, B.K. Lance, G.R. Wood, J. Sherman, M.S. Baker, M.P. Molloy
Journal of Proteome Research (2007) 6(6): 2105-2112
Urinary Proteome Profiling Using Microfluidic Technology on a Chip
V. Thongboonkerd, N. Songtawee, S. Sritippayawan
Journal of Proteome Research (2007) 6(5): 2011-2018
On-Chip Identification and Interaction Analysis of Gel-Resolved Proteins Using a Diamond-like Carbon-Coated Plate
Y. Iwafune, J.-Z. Tan, Y. Ino, A. Okayama, Y. Ishigaki, K. Saito, N. Suzuki, M. Arima, M. Oba, S. Kamei, M. Tanga, T. Okada, H. Hirano
Journal of Proteome Research (2007) 6(6): 2315-2322
Unbiased identification of cysteine S-nitrosylation sites on proteins
Derakhshan B, Wille PC, Gross SS.
Nat Protoc (2007) 2(7): 1685-91
A direct and simple method of coupling matrix-assisted laser desorption and ionization time-of-flight mass spectrometry (MALDI-TOF MS) to thin-layer chromatography (TLC) for the analysis of phospholipids from egg yolk
Fuchs B, Schiller J, Suss R, Schurenberg M, Suckau D.
Anal Bioanal Chem Early Edition: published 3-Aug-2007
On studying protein phosphorylation patterns using bottom-up LC-MS/MS: the case of human alpha-casein
Kjeldsen F, Savitski MM, Nielsen ML, Shi L, Zubarev RA.
Analyst (2007) 132(8): 768-76
Desorption electrospray ionization mass spectrometry of intact bacteria
Mohammed A. Meetani, Yong-Seung Shin, Shaofeng Zhang, Richard Mayer, Franco Basile
Journal of Mass Spectrometry (2007) 42(9): 1186-1193
Tag-Mass: Specific Molecular Imaging of Transcriptome and Proteome by Mass Spectrometry Based on Photocleavable Tag
R. Lemaire, J. Stauber, M. Wisztorski, C. VanCamp, A. Desmons, M. Deschamps, G. Proess, I. Rudlof, A.S. Woods, R. Day, M. Salzet, I. Fournier
Journal of Proteome Research (2007) 6(6): 2057-2067
Plasma/serum proteomics: pre-analytical issues
Barelli S, Crettaz D, Thadikkaran L, Rubin O, Tissot JD
Expert Rev Proteomics (2007) 4(3): 363-70
Label-free LC-MS/MS quantitative proteomics for large-scale biomarker discovery in complex samples
Levin Y, Schwarz E, Wang L, Leweke FM, Bahn S.
J Sep Sci Early Edition: published 2-Aug-2007
Modeling the Isoelectric Focusing of Peptides in an OFFGEL Multicompartment Cell
H.-T. Lam, J. Josserand, N. Lion, H.H. Girault
Journal of Proteome Research (2007) 6(5): 1666-1676
Protein identification by syringe pump-driven reversed-phase LC-MS/MS
Lu CY, Wu CY, Lin CH.
Anal Biochem Early Edition: published 21-Jun-2007
2D Gel Proteomics: An Approach to Study Age-Related Differences in Protein Abundance or Isoform Complexity in Biological Samples
Kim H, Eliuk S, Deshane J, Meleth S, Sanderson T, Pinner A, Robinson G, Wilson L, Kirk M, Barnes S.
Methods Mol Biol (2007) 371: 349-92
Preparative Peptide Isoelectric Focusing as a Tool for Improving the Identification of Lysine-Acetylated Peptides from Complex Mixtures
H. Xie, S. Bandhakavi, M.R. Roe, T.J. Griffin
Journal of Proteome Research (2007) 6(5): 2019-2026
Sample preparation by in-gel digestion for mass spectrometry-based proteomics
Granvogl B, Ploscher M, Eichacker LA.
Anal Bioanal Chem Early Edition: published 17-Jul-2007
Affibody-mediated transferrin depletion for proteomics applications
Gronwall C, Sjoberg A, Ramstrom M, Hoiden-Guthenberg I, Hober S, Jonasson P, Stahl S.
Biotechnol J Early Edition: published 18-Jul-2007
Chip-based nano-LC-MS/MS identification of proteins in complex biological samples using a novel polymer microfluidic device
Srbek J, Eickhoff J, Effelsberg U, Kraiczek K, van de Goor T, Coufal P.
J Sep Sci (2007) 30(13): 2046-52
Multidimensional Separations-Based Shotgun Proteomics
Fournier ML, Gilmore JM, Martin-Brown SA, Washburn MP.
Chem Rev (2007) 107(8): 3654-86
A combinatorial approach to studying protein complex composition by employing size-exclusion chromatography and proteome analysis
Li SS, Giometti CS.
J Sep Sci (2007) 30(10): 1549-55
Gold Nanoparticle Assembly Microfluidic Reactor for Efficient On-line Proteolysis
Yun Liu, Yan Xue, Ji Ji, Xian Chen, Jilie Kong, Pengyuan Yang, Hubert H. Girault, and Baohong Liu
Mol Cell Proteomics (2007) 6(8): 1428-1436
In vitro transcription and translation coupled to two-dimensional electrophoresis for bacterial proteome analysis
Norais N, Garaguso I, Ferrari G, Grandi G.
Methods Mol Biol (2007) 375: 183-209
Method Development of Efficient Protein Extraction in Bone Tissue for Proteome Analysis
X. Jiang, M. Ye, X. Jiang, G. Liu, S. Feng, L. Cui, H. Zou
Journal of Proteome Research (2007) 6(6): 2287-2294
Nanocrystal-Encoded Fluorescent Microbeads for Proteomics: Antibody Profiling and Diagnostics of Autoimmune Diseases
Sukhanova A, Susha AS, Bek A, Mayilo S, Rogach AL, Feldmann J, Oleinikov V, Reveil B, Donvito B, Cohen JH, Nabiev I.
Nano Lett (2007) 7(8): 2322-2327
Silica nanoparticles as pseudostationary phase for protein separation
Weidong Qin
ELECTROPHORESIS (2007) 28(17): 3017-3023
Noncompetitive Detection of Low Molecular Weight Peptides by Open Sandwich Immunoassay
Lim SL, Ichinose H, Shinoda T, Ueda H.
Anal Chem (2007) 79(16): 6193-6200
Protein Sulfenation as a Redox Sensor: Proteomics Studies Using a Novel Biotinylated Dimedone Analogue
Rebecca L. Charles, Ewald Schroder, Georgina May, Paul Free, Piers R. J. Gaffney, Robin Wait, Shajna Begum, Richard J. Heads, and Philip Eaton
Mol Cell Proteomics (2007) 6(9): 1473-1484
Distinguishing isomeric pyridylaminated high-mannose (Man(7)) oligosaccharides based on energy-resolved mass spectra
Kurimoto A, Kanie O.
Rapid Commun Mass Spectrom (2007) 21(16): 2770-8
Detection of potential ion suppression for peptide analysis in nanoflow liquid chromatography/mass spectrometry
Atsumu Hirabayashi, Masako Ishimaru, Naomi Manri, Toshiyuki Yokosuka, Hiroko Hanzawa
Rapid Communications in Mass Spectrometry (2007) 21(17): 2860-2866
HPLC-chip-mass spectrometry for protein signature identifications
Hardouin J, Joubert-Caron R, Caron M.
J Sep Sci (2007) 30(10): 1482-7
Inhibition of Intrinsic Proteolytic Activities Moderates Preanalytical Variability and Instability of Human Plasma
J. Yi, C. Kim, C.A. Gelfand
Journal of Proteome Research (2007) 6(5): 1768-1781
Using high-concentration trypsin-immobilized magnetic nanoparticles for rapid in situ protein digestion at elevated temperature
Jingyueh Jeng, Mon-Fang Lin, Fong-Yu Cheng, Chen-Sheng Yeh, Jentaie Shiea
Rapid Communications in Mass Spectrometry (2007) 21(18): 3060-3068
Accurate Mass Measurements in Proteomics
Liu T, Belov ME, Jaitly N, Qian WJ, Smith RD.
Chem Rev (2007) 107(8): 3621-53
Mild Performic Acid Oxidation Enhances Chromatographic and Top Down Mass Spectrometric Analyses of Histones
James J. Pesavento, Benjamin A. Garcia, James A. Streeky, Neil L. Kelleher, and Craig A. Mizzen
Mol Cell Proteomics (2007) 6(9): 1510-1526
Reproducible and efficient separation of aggregatable zein proteins by CZE using a volatile background electrolyte
Guillaume L. Erny, Maria Luisa Marina, Alejandro Cifuentes
ELECTROPHORESIS (2007) 28(17): 2988-2997
Proteomics for Biological Discovery * Edited by T.D. Veenstra and John R. Yates
Phillip C. Wright
Brief Funct Genomic Proteomic (2007) 6(1): 76-78
Molecular diagnostics and proteomics on the outskirts of personalized medicine
Goldknopf IL.
Expert Rev Mol Diagn (2007) 7(4): 339-343
THE HUPO Human Plasma Proteome Project
Gilbert S. Omenn
PROTEOMICS - CLINICAL APPLICATIONS (2007) 1(8): 769-779
Mapping the Human Proteome Using Antibodies
Mathias Uhlen
Mol Cell Proteomics (2007) 6(8): 1455-1456
Insights into the biology of Escherichia coli through structural proteomics
Matte A, Jia Z, Sunita S, Sivaraman J, Cygler M.
J Struct Funct Genomics Early Edition: published 1-Aug-2007
Pharmacoproteomics: Advancing the Efficacy and Safety of Regenerative Therapeutics
Arrell DK, Niederlander NJ, Perez-Terzic C, Chung S, Behfar A, Terzic A.
Clin Pharmacol Ther Early Edition: published 1-Aug-2007
Human Proteome Organization Proteomics Standards Initiative: Data Standardization, a View on Developments and Policy
Lennart Martens, Sandra Orchard, Rolf Apweiler, and Henning Hermjakob
Mol Cell Proteomics (2007) 6(9): 1666-1667
Proteomics data validation: why all must provide data
Martens L, Hermjakob H.
Mol Biosyst (2007) 3(8): 518-22
Vascular proteomic mapping in vivo
Simonson AB, Schnitzer JE.
J Thromb Haemost (2007) 5(Suppl 1): 183-7