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SPS' DigestIssue 45, 2-Oct-2007 |
Meta-prediction of protein subcellular localization with reduced voting
Liu J, Kang S, Tang C, Ellis LB, Li T
Nucl Acids Res (2007) 35(15): e96
Local Pixel Value Collection Algorithm for Spot Segmentation in Two-Dimensional Gel Electrophoresis Research
Peter Peer and Luis Galo Corzo
Comp Funct Genomics (2007) 2007: 9
An Automated Method for Scanning LC-MS Data Sets for Significant Peptides and Proteins, Including Quantitative Profiling and Interactive Confirmation
A. Kaplan, M. Soderstrom, D. Fenyo, A. Nilsson, M. Falth, K. Skold, M. Svensson, H. Pettersen, S. Lindqvist, P. Svenningsson, P.E. Andren, L. Bjorkesten
Journal of Proteome Research (2007) 6(7): 2888-2895
A grid environment for high-throughput proteomics
Cannataro M, Barla A, Flor R, Jurman G, Merler S, Paoli S, Tradigo G, Veltri P, Furlanello C.
IEEE Trans Nanobioscience (2007) 6(2): 117-23
Lights, Camera, Action! Systematic variation in 2-D difference gel electrophoresis images
Kimberly F. Sellers, Jeffrey Miecznikowski, Surya Viswanathan, Jonathan S. Minden, William F. Eddy
ELECTROPHORESIS (2007) 28(18): 3324-3332
The state of the art in the analysis of two-dimensional gel electrophoresis images
Berth M, Moser FM, Kolbe M, Bernhardt J.
Appl Microbiol Biotechnol Early Edition: published 23-Aug-2007
Intersession Reproducibility of Mass Spectrometry Profiles and its Effect on Accuracy of Multivariate Classification Models
Pelikan R, Bigbee WL, Malehorn D, Lyons-Weiler J, Hauskrecht M.
Bioinformatics Early Edition: published 30-Aug-2007
Protein subcellular localization prediction based on compartment-specific features and structure conservation
Su EC, Chiu HS, Lo A, Hwang JK, Sung TY, Hsu WL.
BMC Bioinformatics (2007) 8(1): 330
N-Glycan Structure Annotation of Glycopeptides Using a Linearized Glycan Structure Database (GlyDB)
J.M. Ren, T. Rejtar, L. Li, B.L. Karger
Journal of Proteome Research (2007) 6(8): 3162-3173
Peptide correlation: A means to identify high quality quantitative information in large-scale proteomic studies
Schwarz E, Levin Y, Wang L, Leweke FM, Bahn S.
J Sep Sci Early Edition: published 7-Aug-2007
Assessing peptide de novo sequencing algorithms performance on large and diverse data sets
Erik Pitzer, Alexandre Masselot, Jacques Colinge
PROTEOMICS (2007) 7(17): 3051-3054
Electrospray ionization ion trap multiple-stage mass spectrometric fragmentation pathways of leucine and isoleucine: an ab initio computational study
Andrea Armirotti, Carlo Scapolla, Umberto Benatti, Gianluca Damonte
Rapid Communications in Mass Spectrometry (2007) 21(19): 3180-3184
Implementation and application of a versatile clustering tool for tandem mass spectrometry data
Kristian Flikka, Jeroen Meukens, Kenny Helsens, Joël Vandekerckhove, Ingvar Eidhammer, Kris Gevaert, Lennart Martens
PROTEOMICS (2007) 7(18): 3245-3258
Submit Your Interaction Data the IMEx Way: A Step by Step Guide to Trouble-free Deposition
Sandra Orchard, Samuel Kerrien, Philip Jones, Arnaud Ceol, Andrew Chatr-aryamontri, Lukasz Salwinski, Jason Nerothin, Henning Hermjakob
PROTEOMICS (2007) 7(S1): 28-34
Chromatographic Alignment of LC-MS and LC-MS/MS Datasets by Genetic Algorithm Feature Extraction
Palmblad M, Mills DJ, Bindschedler LV, Cramer R.
J Am Soc Mass Spectrom Early Edition: published 26-Jul-2007
Pretreatment of Mass Spectral Profiles: Application to Proteomic Data
Arneberg R, Rajalahti T, Flikka K, Berven FS, Kroksveen AC, Berle M, Myhr KM, Vedeler CA, Ulvik RJ And, Kvalheim OM.
Anal Chem (2007) 79(18): 7014-7026
A Platform for Accurate Mass and Time Analyses of Mass Spectrometry Data
D. May, M. Fitzgibbon, Y. Liu, T. Holzman, J. Eng, C.J. Kemp, J. Whiteaker, A. Paulovich, M. McIntosh
Journal of Proteome Research (2007) 6(7): 2685-2694
Genomics and proteomics analysis of cultured primary rat hepatocytes
Beigel J, Fella K, Kramer PJ, Kroeger M, Hewitt P.
Toxicol In Vitro Early Edition: published 21-Jul-2007
A Systematic MS-Based Approach for Identifying in vitro Substrates of PKA and PKG in Rat Uteri
S.-Y. Huang, M.-L. Tsai, G.-Y. Chen, C.-J. Wu, S.-H. Chen
Journal of Proteome Research (2007) 6(7): 2674-2684
Proteomic Variation Is as Large within as between Strawberry Varieties
R. Alm, A. Ekefjard, M. Krogh, J. Hakkinen, C. Emanuelsson
Journal of Proteome Research (2007) 6(8): 3011-3020
Comparative proteome analysis of the embryo proper and yolk sac membrane of day 11.5 cultured rat embryos
Usami M, Mitsunaga K, Nakazawa K.
Birth Defects Res B Dev Reprod Toxicol Early Edition: published 15-Aug-2007
De Novo Mass Spectrometry Sequencing and Characterization of Species-Specific Peptides from Nucleoside Diphosphate Kinase B for the Classification of Commercial Fish Species Belonging to the Family Merlucciidae
M. Carrera, B. Canas, C. Pineiro, J. Vazquez, J.M. Gallardo
Journal of Proteome Research (2007) 6(8): 3070-3080
Effect of folic acid on prenatal alcohol-induced modification of brain proteome in mice
Xu Y, Tang Y, Li Y.
Br J Nutr Early Edition: published 13-Aug-2007
The salivary glands and saliva of Anopheles gambiae as an essential step in the Plasmodium life cycle: A global proteomic study
Valérie Choumet, Annick Carmi-Leroy, Christine Laurent, Pascal Lenormand, Jean-Claude Rousselle, Abdelkader Namane, Charles Roth, Paul T. Brey
PROTEOMICS (2007) 7(18): 3384-3394
Functional proteomics to identify critical proteins in signal transduction pathways
Yan GR, He QY.
Amino Acids Early Edition: published 17-Aug-2007
Comprehensive Analysis of Proteins Secreted by Trichophyton rubrum and Trichophyton violaceum under in Vitro Conditions
K. Giddey, M. Monod, J. Barblan, A. Potts, P. Waridel, C. Zaugg, M. Quadroni
Journal of Proteome Research (2007) 6(8): 3081-3092
Microtubule-Associated Protein 1B Binds Glyceraldehyde-3-phosphate Dehydrogenase
N. Cueille, C.T. Blanc, I.M. Riederer, B.M. Riederer
Journal of Proteome Research (2007) 6(7): 2640-2647
Proteomic Analysis of Activity-Dependent Synaptic Plasticity in Hippocampal Neurons
G. Piccoli, C. Verpelli, N. Tonna, S. Romorini, M. Alessio, A.C. Nairn, A. Bachi, C. Sala
Journal of Proteome Research (2007) 6(8): 3203-3215
Proteomic Analysis of Rat Striatal Synaptosomes During Acrylamide Intoxication At a Low Dose-rate
Barber DS, Stevens S, Lopachin RM.
Toxicol Sci Early Edition: published 13-Aug-2007
Proteomic analysis of cathepsin B and L-deficient mouse brain lysosomes
Stahl S, Reinders Y, Asan E, Mothes W, Conzelmann E, Sickmann A, Felbor U.
Biochim Biophys Acta Early Edition: published 19-Jul-2007
Plasticity and robustness of protein patterns during reversible development in the honey bee (Apis mellifera)
Wolschin F, Amdam GV.
Anal Bioanal Chem (2007) 389(4): 1095-100
Redox stress proteins are involved in adaptation response of the hyperthermoacidophilic archaeon Sulfolobus solfataricus to nickel challenge
Salzano AM, Febbraio F, Farias T, Cetrangolo GP, Nucci R, Scaloni A, Manco G.
Microb Cell Fact (2007) 6(1): 25
Proteomics Study Reveals Cross-Talk between Rho Guanidine Nucleotide Dissociation Inhibitor 1 Post-Translational Modifications in Epidermal Growth Factor Stimulated Fibroblasts
I.C. Guerrera, N.H. Keep, J. Godovac-Zimmermann
Journal of Proteome Research (2007) 6(7): 2623-2630
Apoptosis induced by staurosporine alters chaperone and endoplasmic reticulum proteins: Identification by quantitative proteomics
Duncan M. Short, Ian D. Heron, Jui-Lee A. Birse-Archbold, Lorraine E. Kerr, John Sharkey, James McCulloch
PROTEOMICS (2007) 7(17): 3085-3096
Proteomic analysis of the cellular responses induced in uninfected immune cells by cell-expressed X4 HIV-1 envelope
Laurence Molina, Marina Grimaldi, Véronique Robert-Hebmann, Lucile Espert, Mihayl Varbanov, Christian Devaux, Claude Granier, Martine Biard-Piechaczyk
PROTEOMICS (2007) 7(17): 3116-3130
Proteomic identification of an upregulated isoform of annexin A3 in the rat brain following reversible cerebral ischemia
Junker H, Suofu Y, Venz S, Sascau M, Herndon JG, Kessler C, Walther R, Popa-Wagner A.
Glia (2007) 55(16): 1630-1637
Transcript and proteomic analyses of wild-type and gpa2 mutant Saccharomyces cerevisiae strains suggest a role for glycolytic carbon source sensing in pseudohyphal differentiation
Medintz IL, Vora GJ, Rahbar AM, Thach DC.
Mol Biosyst (2007) 3(9): 623-34
Hypothermia Affects Translocation of Numerous Cytoplasmic Proteins Following Global Cerebral Ischemia
M. Teilum, M. Krogh, T. Wieloch, G. Mattiasson
Journal of Proteome Research (2007) 6(7): 2822-2832
Proteomics of filamentous fungi
Kim Y, Nandakumar MP, Marten MR.
Trends Biotechnol (2007) 25(9): 395-400
Thyroid-State Influence on Protein-Expression Profile of Rat Skeletal Muscle
E. Silvestri, L. Burrone, P. deLange, A. Lombardi, P. Farina, A. Chambery, A. Parente, A. Lanni, F. Goglia, M. Moreno
Journal of Proteome Research (2007) 6(8): 3187-3196
Effect of oxidative stress on protein thiols in the blue mussel Mytilus edulis: Proteomic identification of target proteins
Brian McDonagh, David Sheehan
PROTEOMICS (2007) 7(18): 3395-3403
Comparative genomics and proteomics to study tissue-specific response and function in natural Mycobacterium bovis infections
Naranjo V, Gortazar C, Villar M, de la Fuente J.
Anim Health Res Rev (2007) 8(1): 81-8
A proteomic approach in analyzing heat-responsive proteins in rice leaves
Dong-Gi Lee, Nagib Ahsan, Sang-Hoon Lee, Kyu Young Kang, Jeong Dong Bahk, In-Jung Lee, Byung-Hyun Lee
PROTEOMICS (2007) 7(18): 3369-3383
Comparative proteomics of extracellular proteins in vitro and in planta from the pathogenic fungus Fusarium graminearum
Janet M. Paper, John S. Scott-Craig, Neil D. Adhikari, Christina A. Cuomo, Jonathan D. Walton
PROTEOMICS (2007) 7(17): 3171-3183
Proteomic Analysis of RBC Membrane Protein Degradation during Blood Storage
G.M. D'Amici, S. Rinalducci, L. Zolla
Journal of Proteome Research (2007) 6(8): 3242-3255
Evaluation of the SELDI-TOF MS technique for protein profiling of pancreatic islets exposed to glucose and oleate
Henrik Ortsäter, Tea Sundsten, Jian-Man Lin, Peter Bergsten
PROTEOMICS (2007) 7(17): 3105-3115
Mitochondrial Proteomic Analysis and Characterization of the Intracellular Mechanisms of Bis(7)-tacrine in Protecting against Glutamate-Induced Excitotoxicity in Primary Cultured Neurons
H. Fu, W. Li, Y. Liu, Y. Lao, W. Liu, C. Chen, H. Yu, N.T.K. Lee, D.C. Chang, P. Li, Y. Pang, K.W.K. Tsim, M. Li, Y. Han
Journal of Proteome Research (2007) 6(7): 2435-2446
Analysis of the Mouse Liver Proteome Using Advanced Mass Spectrometry
R. Shi, C. Kumar, A. Zougman, Y. Zhang, A. Podtelejnikov, J. Cox, J.R. Wisniewski, M. Mann
Journal of Proteome Research (2007) 6(8): 2963-2972
Proteomics Reveals New Salt Responsive Proteins Associated with Rice Plasma Membrane
Nohzadeh Malakshah S, Habibi Rezaei M, Heidari M, Hosseini Salekdeh G.
Biosci Biotechnol Biochem (2007) 71(9): 2144-54
Proteomic profiling of chronic low-frequency stimulated fast muscle
Pamela Donoghue, Phil Doran, Kieran Wynne, Kasper Pedersen, Michael J. Dunn, Kay Ohlendieck
PROTEOMICS (2007) 7(18): 3417-3430
A Proteomics Method Revealing Disease-Related Proteins in Livers of Hepatitis-Infected Mouse Model
T. Ichibangase, K. Moriya, K. Koike, K. Imai
Journal of Proteome Research (2007) 6(7): 2841-2849
A proteomic screen reveals novel Fas ligand interacting proteins within nervous system Schwann cells
Thornhill PB, Cohn JB, Drury G, Stanford WL, Bernstein A, Desbarats J.
FEBS Lett (2007) 581(23): 4455-62
Analysis of the liver soluble proteome from bull terriers affected with inherited lethal acrodermatitis
Grider A, Mouat MF, Mauldin EA, Casal ML.
Mol Genet Metab Early Edition: published 9-Aug-2007
Identification of Novel Molecular Candidates for Acute Liver Failure in Plasma of BALB/c Murine Model
S. Lv, L. Wei, J.-h. Wang, J.-y. Wang, F. Liu
Journal of Proteome Research (2007) 6(7): 2746-2752
Proteomics and mass spectrometric studies reveal planktonic growth of Mycobacterium smegmatis in biofilm cultures in the absence of rpoZ
Mukherjee R, Chatterji D.
J Chromatogr B Analyt Technol Biomed Life Sci Early Edition: published 21-Aug-2007
The Alterations of Mouse Plasma Proteins during Septic Development
Y. Ren, J. Wang, J. Xia, C. Jiang, K. Zhao, R. Li, N. Xu, Y. Xu, S. Liu
Journal of Proteome Research (2007) 6(7): 2812-2821
Expression analysis of extracellular proteins from Phanerochaete chrysosporium grown on different liquid and solid substrates
Sato S, Liu F, Koc H, Tien M.
Microbiology (2007) 153(Pt 9): 3023-33
A milk diet partly containing soy protein does not change growth but regulates jejunal proteins in young goats
Kuhla S, Rudolph PE, Albrecht D, Schoenhusen U, Zitnan R, Tomek W, Huber K, Voigt J, Metges CC.
J Dairy Sci (2007) 90(9): 4334-45
Proteomic analysis of plasma membrane and secretory vesicles from human neutrophils
Jethwaney D, Islam MR, Leida KG, Beltran-Valero de Bernabe D, Campbell KP, Nauseef WM, Gibson BW.
Proteome Science (2007) 5(1): 12
Quantitative Proteomics and Protein Network Analysis of Hippocampal Synapses of CaMKIIα Mutant Mice
K.W. Li, S. Miller, O. Klychnikov, M. Loos, J. Stahl-Zeng, S. Spijker, M. Mayford, A.B. Smit
Journal of Proteome Research (2007) 6(8): 3127-3133
Snake Venomics of Bitis Species Reveals Large Intragenus Venom Toxin Composition Variation: Application to Taxonomy of Congeneric Taxa
J.J. Calvete, J. Escolano, L. Sanz
Journal of Proteome Research (2007) 6(7): 2732-2745
The human peripheral blood mononuclear cell proteome responds to a dietary flaxseed-intervention and proteins identified suggest a protective effect in atherosclerosis
Dagmar Fuchs, Regina Piller, Jakob Linseisen, Hannelore Daniel, Uwe Wenzel
PROTEOMICS (2007) 7(18): 3278-3288
Proteomic analysis of rice (Oryza sativa) seeds during germination
Pingfang Yang, Xiaojuan Li, Xiaoqin Wang, Hui Chen, Fan Chen, Shihua Shen
PROTEOMICS (2007) 7(18): 3358-3368
Proteome analysis of an ectomycorrhizal fungus Boletus edulis under salt shock
Liang Y, Chen H, Tang M, Shen S.
Mycol Res (2007) 111(Pt 8): 939-46
Transcriptomic and Proteomic Analyses of Pericycle Cells of the Maize (Zea mays L.) Primary Root
Dembinsky D, Woll K, Saleem M, Liu Y, Fu Y, Borsuk LA, Lamkemeyer T, Fladerer C, Madlung J, Barbazuk B, Nordheim A, Nettleton D, Schnable PS, Hochholdinger F.
Plant Physiol Early Edition: published 31-Aug-2007
Proteomic Analysis of Near-Isogenic Sunflower Varieties Differing in Seed Oil Traits
M. Hajduch, J.E. Casteel, S. Tang, L.B. Hearne, S. Knapp, J.J. Thelen
Journal of Proteome Research (2007) 6(8): 3232-3241
Proteomic analysis of rabbit tear fluid: Defensin levels after an experimental corneal wound are correlated to wound closure
Lei Zhou, Roger W. Beuerman, Liqun Huang, Amutha Barathi, Yong Hwee Foo, Sam F. Y. Li, Fook Tim Chew, Donald Tan
PROTEOMICS (2007) 7(17): 3194-3206
Dissecting Meiosis of Rye using Translational Proteomics
Phillips D, Mikhailova EI, Timofejeva L, Mitchell JL, Osina O, Sosnikhina SP, Jones RN, Jenkins G.
Ann Bot (Lond) Early Edition: published 31-Aug-2007
Characterization of Protein Changes Associated with Sugar Beet (Beta vulgaris) Resistance and Susceptibility to Fusarium oxysporum
Larson RL, Hill AL, Nunez A.
J Agric Food Chem (2007) 55(19): 7905-15
Proteome Analysis of Desulfovibrio desulfuricans G20 Mutants Using the Accurate Mass and Time (AMT) Tag Approach
Q. Luo, K.K. Hixson, S.J. Callister, M.S. Lipton, B.E.L. Morris, L.R. Krumholz
Journal of Proteome Research (2007) 6(8): 3042-3053
Proteomic and Peptidomic Characterization of the Venom from the Chinese Bird Spider, Ornithoctonus huwena Wang
C. Yuan, Q. Jin, X. Tang, W. Hu, R. Cao, S. Yang, J. Xiong, C. Xie, J. Xie, S. Liang
Journal of Proteome Research (2007) 6(7): 2792-2801
Proteomic Analysis of Silk Gland Programmed Cell Death during Metamorphosis of the Silkworm Bombyx mori
S.-h. Jia, M.-w. Li, B. Zhou, W.-b. Liu, Y. Zhang, X-x. Miao, R. Zeng, Y.-p. Huang
Journal of Proteome Research (2007) 6(8): 3003-3010
Binding specificities of the GYF domains from two Saccharomyces cerevisiae Paralogs
Georgiev A, Sjostrom M, Wieslander A.
Protein Eng Des Sel Early Edition: published 4-Sep-2007
Diversity of Toxic Components from the Venom of the Evolutionarily Distinct Black Whip Snake, Demansia vestigiata
L. StPierre, G.W. Birrell, S.T. Earl, T.P. Wallis, J.J. Gorman, J. deJersey, P.P. Masci, M.F. Lavin
Journal of Proteome Research (2007) 6(8): 3093-3107
Identification of Novel Surface Proteins of Anaplasma phagocytophilum by Affinity Purification and Proteomics
Ge Y, Rikihisa Y.
J Bacteriol Early Edition: published 31-Aug-2007
Purification, characterization, and substrate specificity of a glucoamylase with steroidal saponin-rhamnosidase activity from Curvularia lunata
Feng B, Hu W, Ma BP, Wang YZ, Huang HZ, Wang SQ, Qian XH.
Appl Microbiol Biotechnol (2007) 76(6): 1329-38
Proteomic Analysis of Pancreatic Zymogen Granules: Identification of New Granule Proteins
M.J. Rindler, C.-f. Xu, I. Gumper, N.N. Smith, T.A. Neubert
Journal of Proteome Research (2007) 6(8): 2978-2992
Profiling the Bordetella pertussis Proteome during Iron Starvation
M.L. PerezVidakovics, J. Paba, Y. Lamberti, C.A. Ricart, M. ValledeSousa, M.E. Rodriguez
Journal of Proteome Research (2007) 6(7): 2518-2528
Carbonate extraction process for the metabolic, isozymic and proteomic profiling of rose-scented geranium (Pelargonium sp.), a hyper-acidic plant
Sangwan RS, Sangwan NS, Sharma PK, Chaurasiya ND, Mishra SK, Tyagi BR, Srivastava AK.
Phytochem Anal Early Edition: published 24-Aug-2007
Comparative proteomic analysis of myotube caveolae after milli-calpain deregulation
Sébastien Goudenege, Elise Dargelos, Stéphane Claverol, Marc Bonneu, Patrick Cottin, Sylvie Poussard
PROTEOMICS (2007) 7(18): 3289-3298
Pulse field gel electrophoresis, pertactin, pertussis toxin S1 subunit polymorphisms and surfaceome analysis of vaccine and clinical Bordetella pertussis strains
Bottero D, Gaillard ME, Fingermann M, Weltman G, Fernandez J, Sisti F, Graieb A, Roberts R, Rico O, Rios G, Regueira M, Binsztein N, Hozbor D.
Clin Vaccine Immunol Early Edition: published 15-Aug-2007
Proteomic Profiling of Plasma in Huntington's Disease Reveals Neuroinflammatory Activation and Biomarker Candidates
A. Dalrymple, E.J. Wild, R. Joubert, K. Sathasivam, M. Bjorkqvist, A. Petersen, G.S. Jackson, J.D. Isaacs, M. Kristiansen, G.P. Bates, B.R. Leavitt, G. Keir, M. Ward, S.J. Tabrizi
Journal of Proteome Research (2007) 6(7): 2833-2840
Characterization of Biomarkers in Polycystic Ovary Syndrome (PCOS) Using Multiple Distinct Proteomic Platforms
B. Matharoo-Ball, C. Hughes, L. Lancashire, D. Tooth, G. Ball, C. Creaser, M. Elgasim, R. Rees, R. Layfield, W. Atiomo
Journal of Proteome Research (2007) 6(8): 3321-3328
Novel Serum Biomarker Candidates for Liver Fibrosis in Hepatitis C Patients
Gangadharan B, Antrobus R, Dwek RA, Zitzmann N.
Clin Chem (2007) 53(10): 1792-9
Serum proteomics with SELDI-TOF-MS in congenital human cytomegalovirus hepatitis
Liu Z, Tian Y, Wang B, Yan Z, Qian D, Ding S, Song X, Bai Z, Li L.
J Med Virol (2007) 79(10): 1500-5
Quantitative Proteomics Identifies Surfactant-Resistant {alpha}-Synuclein in Cerebral Cortex of Parkinsonism-Dementia Complex of Guam but Not Alzheimer's Disease or Progressive Supranuclear Palsy
Yang W, Woltjer RL, Sokal I, Pan C, Wang Y, Brodey M, Peskind ER, Leverenz JB, Zhang J, Perl DP, Galasko DR, Montine TJ.
Am J Pathol (2007) 171(3): 993-1002
Biomarker Discovery from Uveal Melanoma Secretomes: Identification of gp100 and Cathepsin D in Patient Serum
M. Pardo, A. Garcia, R. Antrobus, M.J. Blanco, R.A. Dwek, N. Zitzmann
Journal of Proteome Research (2007) 6(7): 2802-2811
Urine proteomics: the present and future of measuring urinary protein components in disease
Barratt J, Topham P.
CMAJ (2007) 177(4): 361-8
Bladder Cancer Associated Glycoprotein Signatures Revealed by Urinary Proteomic Profiling
P. Kreunin, J. Zhao, C. Rosser, V. Urquidi, D.M. Lubman, S. Goodison
Journal of Proteome Research (2007) 6(7): 2631-2639
Analyses of intricate kinetics of the serum proteome during and after colon surgery by protein expression time series
Han Roelofsen, Gloria Alvarez-Llamas, Martijn Dijkstra, Rainer Breitling, Klaas Havenga, Johan Bijzet, Wouter Zandbergen, Marcel P. de Vries, Rutger J. Ploeg, Roel J. Vonk
PROTEOMICS (2007) 7(17): 3219-3228
Identification of Differentially Secreted Biomarkers Using LC-MS/MS in Isogenic Cell Lines Representing a Progression of Breast Cancer
F. Mbeunkui, B.J. Metge, L.A. Shevde, L.K. Pannell
Journal of Proteome Research (2007) 6(8): 2993-3002
Cerebrospinal fluid biomarkers in clinically isolated syndromes and multiple sclerosis
Michele Fiorini, Gianluigi Zanusso, Maria Donata Benedetti, Pier Giorgio Righetti, Salvatore Monaco
PROTEOMICS - CLINICAL APPLICATIONS (2007) 1(9): 963-971
Protein damage and inflammation in uraemia and dialysis patients
Galli F.
Nephrol Dial Transplant (2007) 22(Suppl 5): v20-36
Proteomic identification of nitrated brain proteins in amnestic mild cognitive impairment: a regional study
Sultana R, Reed T, Perluigi M, Coccia R, Pierce WM, Butterfield DA.
J Cell Mol Med (2007) 11(4): 839-51
Serum proteomic profiling of dementia with Lewy bodies: diagnostic potential of SELDI-TOF MS analysis
Wada-Isoe K, Michio K, Imamura K, Nakaso K, Kusumi M, Kowa H, Nakashima K.
J Neural Transm Early Edition: published 10-Aug-2007
Proteome Analysis and Tissue Microarray for Profiling Protein Markers Associated with Lymph Node Metastasis in Colorectal Cancer
H. Pei, H. Zhu, S. Zeng, Y. Li, H. Yang, L. Shen, J. Chen, L. Zeng, J. Fan, X. Li, Y. Gong, H. Shen
Journal of Proteome Research (2007) 6(7): 2495-2501
A Combined SDS-PAGE and Proteomics Approach to Identify Target Autoantigens in Healthy Individuals and Patients with Autoimmune Diseases
Guilpain P, Servettaz A, Tamby MC, Chanseaud Y, Tamas N, Pena-Lefebvre PG, Broussard C, Guillevin L, Camoin L, Mouthon L.
Ann N Y Acad Sci (2007) 1109: 538-549.
Proteomic analysis of hepatitis B surface antigen positive transgenic mouse liver and decrease of cyclophilin A
Zhao C, Fang CY, Tian XC, Wang L, Yang PY, Wen YM.
J Med Virol (2007) 79(10): 1478-84
Oncoproteomics of hepatocellular carcinoma: from cancer markers' discovery to functional pathways
Sun S, Lee NP, Poon RT, Fan ST, He QY, Lau GK, Luk JM.
Liver Int (2007) 27(8): 1021-38
Relationship between Vitamin D Binding Protein and Aspirin Resistance in Coronary Ischemic Patients: A Proteomic Study
A.J. Lopez-Farre, P.J. Mateos-Caceres, D. Sacristan, L. Azcona, E. Bernardo, T. PerezdePrada, S. Alonso-Orgaz, M. Fernandez-Arquero, A. Fernandez-Ortiz, C. Macaya
Journal of Proteome Research (2007) 6(7): 2481-2487
Identification of novel proteins affected by rotenone in mitochondria of dopaminergic cells
Jin J, Davis J, Zhu D, Kashima DT, Leroueil M, Pan C, Montine KS, Zhang J.
BMC Neurosci (2007) 8(1): 67
Proteomic approaches for identifying new allergens and diagnosing allergic diseases
Gonzalez-Buitrago JM, Ferreira L, Isidoro-Garcia M, Sanz C, Lorente F, Davila I.
Clin Chim Acta (2007) 385(1-2): 21-7
Clinical significance of protein adsorbable membranes--long-term clinical effects and analysis using a proteomic technique
Aoike I.
Nephrol Dial Transplant (2007) 22(Suppl 5): v13-9
Proteomic analysis of immature murine melanocytes at different stages of maturation: A crucial role for calreticulin
Kawase A, Kushimoto T, Kawa Y, Ohsumi K, Nishikawa H, Kawakami T, Mizoguchi M, Soma Y.
J Dermatol Sci Early Edition: published 6-Sep-2007
Protein Expression in the Striatum and Cortex Regions of the Brain for a Mouse Model of Huntington's Disease
X. Liu, B.R. Miller, G.V. Rebec, D.E. Clemmer
Journal of Proteome Research (2007) 6(8): 3134-3142
Proteomic analysis of EZH2 downstream target proteins in hepatocellular carcinoma
Yangchao Chen, Marie Chia-mi Lin, Hua Wang, Chu-yan Chan, Lei Jiang, Sai Ming Ngai, Jun Yu, Ming-liang He, Pang-Chui Shaw, David T. Yew, Joseph J. Sung, Hsiang-fu Kung
PROTEOMICS (2007) 7(17): 3097-3104
Shared Immunoproteome for Ovarian Cancer Diagnostics and Immunotherapy: Potential Theranostic Approach to Cancer
R. Philip, S. Murthy, J. Krakover, G. Sinnathamby, J. Zerfass, L. Keller, M. Philip
Journal of Proteome Research (2007) 6(7): 2509-2517
Identification by proteomic tool of atypical anti-liver/kidney microsome autoantibodies targets in de novo autoimmune hepatitis after liver transplantation
Huguet S, Vinh J, Johanet C, Samuel D, Gigou M, Zamfir O, Duclos-Vallee JC, Ballot E.
Ann N Y Acad Sci (2007) 1109: 345-57.
Comparative proteomic profiling of cerebrospinal fluid between living and post mortem ALS and control subjects
Ranganathan S, Nicholl GC, Henry S, Lutka F, Sathanoori R, Lacomis D, Bowser R.
Amyotroph Lateral Scler Early Edition: published 3-Aug-2007
The ongoing evolution of proteomics in malignancy
Dhamoon AS, Kohn EC, Azad NS.
Drug Discov Today (2007) 12(17-18): 700-8
Key clinical issues in renal cancer: a challenge for proteomics
Banks RE, Craven RA, Harnden P, Madaan S, Joyce A, Selby PJ.
World J Urol Early Edition: published 25-Aug-2007
Novel Neutrophil-Derived Proteins in Bronchoalveolar Lavage Fluid Indicate an Exaggerated Inflammatory Response in Pediatric Cystic Fibrosis Patients
McMorran BJ, Ouvry Patat SA, Carlin JB, Grimwood K, Jones A, Armstrong DS, Galati JC, Cooper PJ, Byrnes CA, Francis PW, Robertson CF, Hume DA, Borchers CH, Wainwright CE, Wainwright BJ.
Clin Chem (2007) 53(10): 1782-91
Changes in the protein spectrum of mitochondria isolated from hydroxycamptothecin-treated hepatoma cells
Fu YR, Yi ZJ, Yan YR, Qiu ZY.
Anticancer Drugs (2007) 18(9): 1045-52
Proteome analyses of the growth inhibitory effects of NCH-51, a novel histone deacetylase inhibitor, on lymphoid malignant cells
Sanda T, Okamoto T, Uchida Y, Nakagawa H, Iida S, Kayukawa S, Suzuki T, Oshizawa T, Suzuki T, Miyata N, Ueda R.
Leukemia Early Edition: published 9-Aug-2007
Structural proteomics of the SARS coronavirus: a model response to emerging infectious diseases
Bartlam M, Xu Y, Rao Z.
J Struct Funct Genomics Early Edition: published 7-Aug-2007
Identification of Differentially Expressed Proteins in Experimental Autoimmune Encephalomyelitis (EAE) by Proteomic Analysis of the Spinal Cord
T. Liu, K.C. Donahue, J. Hu, M.P. Kurnellas, J.E. Grant, H. Li, S. Elkabes
Journal of Proteome Research (2007) 6(7): 2565-2575
Proteomic identification of biomarkers in the cerebrospinal fluid in a rat model of nigrostriatal dopaminergic degeneration
Rite I, Arguelles S, Venero JL, Garcia-Rodriguez S, Ayala A, Cano J, Machado A.
J Neurosci Res Early Edition: published 17-Aug-2007
Diagnostic value of serum protein profiling by SELDI-TOF ProteinChip compared with a biochemical marker, FibroTest, for the diagnosis of advanced fibrosis in patients with chronic hepatitis C
Morra R, Munteanu M, Bedossa P, Dargere D, Janneau JL, Paradis V, Ratziu V, Charlotte F, Thibault V, Imbert-Bismut F, Poynard T.
Aliment Pharmacol Ther (2007) 26(6): 847-58
Personalized Medicine and Proteomics: Lessons from Non-Small Cell Lung Cancer
G. Marko-Varga, A. Ogiwara, T. Nishimura, T. Kawamura, K. Fujii, T. Kawakami, Y. Kyono, H.-k. Tu, H. Anyoji, M. Kanazawa, S. Akimoto, T. Hirano, M. Tsuboi, K. Nishio, S. Hada, H. Jiang, M. Fukuoka, K. Nakata, Y. Nishiwaki, H. Kunito, I.S. Peers, C.G. Harbron, M.C. South, T. Higenbottam, F. Nyberg, S. Kudoh, H. Kato
Journal of Proteome Research (2007) 6(8): 2925-2935
Evaluation of human hepatocyte chimeric mice as a model for toxicological investigation using panomic approaches - effect of acetaminophen on the expression profiles of proteins and endogenous metabolites in liver, plasma and urine
Yamamoto T, Tomizawa K, Fujikawa M, Sato Y, Yamada H, Horii I.
J Toxicol Sci (2007) 32(3): 205-15
Mass spectrometry based proteomics in urine biomarker discovery
Theodorescu D, Mischak H.
World J Urol (2007) 25(5): 435-43
CSF Metabolic and Proteomic Profiles in Patients Prodromal for Psychosis
Huang JT, Leweke FM, Tsang TM, Koethe D, Kranaster L, Gerth CW, Gross S, Schreiber D, Ruhrmann S, Schultze-Lutter F, Klosterkotter J, Holmes E, Bahn S.
PLoS ONE (2007) 2: e756.
A Controversial Tumor Marker: Is SM22 a Proper Biomarker for Gastric Cancer Cells?
N. Li, J. Zhang, Y. Liang, J. Shao, F. Peng, M. Sun, N. Xu, X. Li, R. Wang, S. Liu, Y. Lu
Journal of Proteome Research (2007) 6(8): 3304-3312
Genomic and proteomic determinants of lower extremity revascularization failure: Rationale and study design
Nelson PR, O'malley KA, Feezor RJ, Moldawer LL, Seeger JM.
J Vasc Surg (2007) 45(Suppl A): 82-91
Discovery of oral fluid biomarkers for human oral cancer by mass spectrometry
Hu S, Yu T, Xie Y, Yang Y, Li Y, Zhou X, Tsung S, Loo RR, Loo JR, Wong DT.
Cancer Genomics Proteomics (2007) 4(2): 55-64
{beta}2-Microglobulin as a Biomarker in Peripheral Arterial Disease. Proteomic Profiling and Clinical Studies
Wilson AM, Kimura E, Harada RK, Nair N, Narasimhan B, Meng XY, Zhang F, Beck KR, Olin JW, Fung ET, Cooke JP.
Circulation (2007) 116(12): 1396-403
Identification of candidate prostate cancer biomarkers in prostate needle biopsy specimens using proteomic analysis
Lin JF, Xu J, Tian HY, Gao X, Chen QX, Gu Q, Xu GJ, Song JD, Zhao FK.
Int J Cancer Early Edition: published 23-Aug-2007
Redox proteomics and immunohistology to study molecular events during ischemia-reperfusion in human liver
Avellini C, Baccarani U, Trevisan G, Cesaratto L, Vascotto C, D'Aurizio F, Pandolfi M, Adani GL, Tell G.
Transplant Proc (2007) 39(6): 1755-60
Ocular effects of exposure to industrial chemicals: clinical management and proteomic approaches to damage assessment
Bhattacharya SK, Hom GG, Fernandez C, Hom LG.
Cutan Ocul Toxicol (2007) 26(3): 203-25
Proteomic Analysis of Human Cervico-Vaginal Fluid
J.L.V. Shaw, C.R. Smith, E.P. Diamandis
Journal of Proteome Research (2007) 6(7): 2859-2865
Comparative Proteomic Expression Profile in All-trans Retinoic Acid Differentiated Neuroblastoma Cell Line
F. Cimmino, D. Spano, M. Capasso, N. Zambrano, R. Russo, M. Zollo, A. Iolascon
Journal of Proteome Research (2007) 6(7): 2550-2564
Genomic and proteomic profiling I: Leiomyomas in African Americans and Caucasians
Pan Q, Luo X, Chegini N.
Reprod Biol Endocrinol (2007) 5(1): 34
SELDI protein profiling of dunning R-3327 derived cell lines: Identification of molecular markers of prostate cancer progression
Malik G, Rojahn E, Ward MD, Gretzer MB, Partin AW, Semmes OJ, Veltri RW.
Prostate (2007) 67(14): 1565-1575
Liver proteomics for therapeutic drug discovery: Inhibition of the cyclophilin receptor CD147 attenuates sepsis-induced acute renal failure
Dear JW, Leelahavanichkul A, Aponte A, Hu X, Constant SL, Hewitt SM, Yuen PS, Star RA.
Crit Care Med Early Edition: published 14-Aug-2007
Differentiation of tumour-stage mycosis fungoides, psoriasis vulgaris and normal controls in a pilot study using serum proteomic analysis
Cowen EW, Liu CW, Steinberg SM, Kang S, Vonderheid EC, Kwak HS, Booher S, Petricoin EF, Liotta LA, Whiteley G, Hwang ST.
Br J Dermatol Early Edition: published 13-Sep-2007
Epithelial Ovarian Cancer: Disease Etiology, Treatment, Detection, and Investigational Gene, Metabolite, and Protein Biomarkers
T.I. Williams, K.L. Toups, D.A. Saggese, K.R. Kalli, W.A. Cliby, D.C. Muddiman
Journal of Proteome Research (2007) 6(8): 2936-2962
Redox Proteomics Identification of Oxidatively Modified Brain Proteins in Alzheimer's Disease and Mild Cognitive Impairment: Insights into the Progression of this Dementing Disorder
Butterfield DA, Sultana R.
J Alzheimers Dis (2007) 12(1): 61-72
Markedly Increased Urinary Preprohaptoglobin and Haptoglobin in Passive Heymann Nephritis: A Differential Proteomics Approach
H.H.-Y. Ngai, W.-H. Sit, P.-P. Jiang, V. Thongboonkerd, J.M.-F. Wan
Journal of Proteome Research (2007) 6(8): 3313-3320
Verification of Endometrial Tissue Biomarkers Previously Discovered Using Mass Spectrometry-Based Proteomics by Means of Immunohistochemistry in a Tissue Microarray Format
V. Dube, J. Grigull, L.V. DeSouza, S. Ghanny, T.J. Colgan, A.D. Romaschin, K.W.M. Siu
Journal of Proteome Research (2007) 6(7): 2648-2655
Specific Proteins Identified in Whole Saliva from Patients with Diffuse Systemic Sclerosis
Giusti L, Bazzichi L, Baldini C, Ciregia F, Mascia G, Giannaccini G, Del Rosso M, Bombardieri S, Lucacchini A.
J Rheumatol Early Edition: published 15-Aug-2007
Identification of Candidate Biomarker Proteins Released by Human Endometrial and Cervical Cancer Cells Using Two-Dimensional Liquid Chromatography/Tandem Mass Spectrometry
H. Li, L.V. DeSouza, S. Ghanny, W. Li, A.D. Romaschin, T.J. Colgan, K.W.M. Siu
Journal of Proteome Research (2007) 6(7): 2615-2622
Cancer immunomics: from serological proteome analysis to multiple affinity protein profiling
Hardouin J, Lasserre JP, Sylvius L, Joubert-Caron R, Caron M.
Ann N Y Acad Sci (2007) 1107: 223-30.
Serum Protein Profiling to Identify High-Risk Neuroblastoma: Preclinical Relevance of Blood-Based Biomarkers
Sandoval JA, Turner KE, Hoelz DJ, Rescorla FJ, Hickey RJ, Malkas LH.
J Surg Res (2007) 142(2): 268-74
Use of comparative proteomics to identify potential resistance mechanisms in cancer treatment
Zhang JT, Liu Y.
Cancer Treat Rev Early Edition: published 11-Sep-2007
Proteomic Analysis of Human Cervical-Vaginal Fluids
L.-J. Tang, F. DeSeta, F. Odreman, P. Venge, C. Piva, S. Guaschino, R.C. Garcia
Journal of Proteome Research (2007) 6(7): 2874-2883
Analysis of protein changes during grape berry ripening by 2-DE and MALDI-TOF
Marzia Giribaldi, Iolanda Perugini, François-Xavier Sauvage, Andrea Schubert
PROTEOMICS (2007) 7(17): 3154-3170
De novo protein sequence analysis of Macaca mulatta
Tannu NS, Hemby SE.
BMC Genomics (2007) 8(1): 270
Mechanisms of Laser-Induced Dissection and Transport of Histologic Specimens
Vogel A, Lorenz K, Horneffer V, Huettmann G, von Smolinski D, Gebert A.
Biophys J Early Edition: published 31-Aug-2007
In search of neutrophil granule proteins of the tammar wallaby (Macropus eugenii)
Ambatipudi K, Deane EM.
Mol Immunol Early Edition: published 14-Aug-2007
Differential proteomic profiling of mitochondria from Podospora anserina, rat and human reveals distinct patterns of age-related oxidative changes
Groebe K, Krause F, Kunstmann B, Unterluggauer H, Reifschneider NH, Scheckhuber CQ, Sastri C, Stegmann W, Wozny W, Schwall GP, Poznanovic S, Dencher NA, Jansen-Durr P, Osiewacz HD, Schrattenholz A.
Exp Gerontol (2007) 42(9): 887-98
Proteomic analyses of retina of excitatory amino acid carrier 1 deficient mice
Okumichi H, Kanamoto T, Souchelnytskyi N, Tanimoto S, Tanaka K, Kiuchi Y.
Proteome Science (2007) 5(1): 13
White spot syndrome virus proteins and differentially expressed host proteins identified in shrimp epithelium by shotgun proteomics and cleavable isotope-coded affinity tag
Wu J, Lin Q, Lim TK, Liu T, Hew CL.
J Virol Early Edition: published 22-Aug-2007
Quantification of the synaptosomal proteome of the rat cerebellum during post-natal development
McClatchy DB, Liao L, Park SK, Venable JD, Yates JR.
Genome Res (2007) 17(9): 1378-88
Proteomic analysis of platelet alpha-granules using mass spectrometry
Maynard DM, Heijnen HF, Horne MK, White JG, Gahl WA.
J Thromb Haemost (2007) 5(9): 1945-55
Changes in Drosophila melanogaster midgut proteins in response to dietary Bowman-Birk inhibitor
Li HM, Margam V, Muir WM, Murdock LL, Pittendrigh BR.
Insect Mol Biol (2007) 16(5): 539-49
Two-dimensional electrophoresis for comparative proteomic analysis of human bile
Chen B, Dong JQ, Chen YJ, Wang JM, Tian J, Wang CB, Zou SQ.
Hepatobiliary Pancreat Dis Int (2007) 6(4): 402-6
Analysis of transcripts and proteins expressed in the salivary glands of Hessian fly (Mayetiola destructor) larvae
Chen MS, Zhao HX, Zhu YC, Scheffler B, Liu X, Liu X, Hulbert S, Stuart JJ.
J Insect Physiol Early Edition: published 10-Aug-2007
Proteins Associated with the Myxococcus xanthus Extracellular Matrix
Curtis PD, Atwood J 3rd, Orlando R, Shimkets LJ.
J Bacteriol Early Edition: published 31-Aug-2007
Adaptation and response of Bifidobacterium animalis subsp. lactis to bile: a proteomic and physiological approach
Sanchez B, Champomier-Verges MC, Stuer-Lauridsen B, Ruas-Madiedo P, Anglade P, Baraige F, de Los Reyes-Gavilan CG, Johansen E, Zagorec M, Margolles A.
Appl Environ Microbiol Early Edition: published 7-Sep-2007
Novel identification of expressed genes and functional classification of hypothetical proteins from Neisseria meningitidis serogroup A
Giulia Bernardini, Simona Arena, Daniela Braconi, Andrea Scaloni, Annalisa Santucci
PROTEOMICS (2007) 7(18): 3342-3347
Effects of Bacterial Colonization on the Porcine Intestinal Proteome
M. Danielsen, H. Hornshoj, R.H. Siggers, B.B. Jensen, A.G. vanKessel, E. Bendixen
Journal of Proteome Research (2007) 6(7): 2596-2604
Virulence and prodigiosin antibiotic biosynthesis in Serratia are regulated pleiotropically by the GGDEF/EAL domain protein, PigX
Fineran PC, Williamson NR, Lilley KS, Salmond GP.
J Bacteriol Early Edition: published 31-Aug-2007
Membrane-bound L: - and D: -lactate dehydrogenase activities of a newly isolated Pseudomonas stutzeri strain
Ma C, Gao C, Qiu J, Hao J, Liu W, Wang A, Zhang Y, Wang M, Xu P.
Appl Microbiol Biotechnol Early Edition: published 6-Sep-2007
Analysis of Whole Cell Lysate from the Intercellular Bacterium Coxiella burnetii Using Two Gel-Based Protein Separation Techniques
G. Samoilis, A. Psaroulaki, K. Vougas, Y. Tselentis, G. Tsiotis
Journal of Proteome Research (2007) 6(8): 3032-3041
Identification of novel bacterial plasminogen-binding proteins in the human pathogen Mycobacterium tuberculosis
Wendy Xolalpa, Antonio J. Vallecillo, Martha Lara, Guillermo Mendoza-Hernandez, Marcelo Comini, Ralf Spallek, Mahavir Singh, Clara Espitia
PROTEOMICS (2007) 7(18): 3332-3341
Microbial proteomics
Timmins GS.
Drug Dev Ind Pharm (2007) 33(8): 907
A comparative proteomic approach to understand the adaptations of an H+-ATPase-defective mutant of Corynebacterium glutamicum ATCC14067 to energy deficiencies
Liyuan Li, Masaru Wada, Atsushi Yokota
PROTEOMICS (2007) 7(18): 3348-3357
Proteomics and mass spectrometric studies reveal planktonic growth of Mycobacterium smegmatis in biofilm cultures in the absence of rpoZ
Mukherjee R, Chatterji D.
J Chromatogr B Analyt Technol Biomed Life Sci Early Edition: published 21-Aug-2007
Proteomic characterization of the Rhodobacter sphaeroides 2.4.1 photosynthetic membrane: Identification of new proteins
Zeng X, Roh JH, Callister SJ, Tavano CL, Donohue TJ, Lipton MS, Kaplan S.
J Bacteriol Early Edition: published 17-Aug-2007
Global proteomic profiling of native outer membrane vesicles derived from Escherichia coli
Eun-Young Lee, Joo Young Bang, Gun Wook Park, Dong-Sic Choi, Ji Seoun Kang, Hyun-Jung Kim, Kyong-Su Park, Jeong-Ok Lee, Yoon-Keun Kim, Kyung-Hoon Kwon, Kwang-Pyo Kim, Yong Song Gho
PROTEOMICS (2007) 7(17): 3143-3153
Evaluation of human hepatocyte chimeric mice as a model for toxicological investigation using panomic approaches - effect of acetaminophen on the expression profiles of proteins and endogenous metabolites in liver, plasma and urine
Yamamoto T, Tomizawa K, Fujikawa M, Sato Y, Yamada H, Horii I.
J Toxicol Sci (2007) 32(3): 205-15
Integrated analytical approach in veal calves administered the anabolic androgenic steroids boldenone and boldione: urine and plasma kinetic profile and changes in plasma protein expression
Rosa Draisci, Clara Montesissa, Barbara Santamaria, Chiara D'Ambrosio, Giovanni Ferretti, Roberta Merlanti, Carolina Ferranti, Marco De Liguoro, Claudia Cartoni, Erika Pistarino, Lino Ferrara, Micaela Tiso, Andrea Scaloni, M. Elisabetta Cosulich
PROTEOMICS (2007) 7(17): 3184-3193
Proteomic approach to studying the cytotoxicity of YC-1 on U937 leukemia cells and antileukemia activity in orthotopic model of leukemia mice
Jing-Gung Chung, Jai-Sing Yang, Li-Jiau Huang, Fang-Yu Lee, Che-Ming Teng, Sheng-Chung Tsai, Kuei-Li Lin, Shu-Fang Wang, Sheng-Chu Kuo
PROTEOMICS (2007) 7(18): 3305-3317
Proteomic Analysis of Human NK-92 Cells after NK Cell-Mediated Cytotoxicity against K562 Cells
Liu XC, Liang H, Tian Z, Ruan YS, Zhang L, Chen Y.
Biochemistry (Mosc) (2007) 72(7): 716-27
Proteome analysis of chemically induced mouse liver tumors with different genotype
Julia Strathmann, Krisztina Paal, Carina Ittrich, Eberhard Krause, Klaus E. Appel, Howard P. Glauert, Albrecht Buchmann, Michael Schwarz
PROTEOMICS (2007) 7(18): 3318-3331
Antibody screening database for protein kinetic modeling
Brett Spurrier, Frank L. Washburn, Samuel Asin, Sundhar Ramalingam, Satoshi Nishizuka
PROTEOMICS (2007) 7(18): 3259-3263
Analysis of Signaling Pathways in 90 Cancer Cell Lines by Protein Lysate Array
K. NatarajanMendes, D. Nicorici, D. Cogdell, I. Tabus, O. Yli-Harja, R. Guerra, S.R. Hamilton, W. Zhang
Journal of Proteome Research (2007) 6(7): 2753-2767
Multifunctional CMOS Microchip Coatings for Protein and Peptide Arrays
V. Stadler, M. Beyer, K. Konig, A. Nesterov, G. Torralba, V. Lindenstruth, M. Hausmann, F.R. Bischoff, F. Breitling
Journal of Proteome Research (2007) 6(8): 3197-3202
Novel Neutrophil-Derived Proteins in Bronchoalveolar Lavage Fluid Indicate an Exaggerated Inflammatory Response in Pediatric Cystic Fibrosis Patients
McMorran BJ, Ouvry Patat SA, Carlin JB, Grimwood K, Jones A, Armstrong DS, Galati JC, Cooper PJ, Byrnes CA, Francis PW, Robertson CF, Hume DA, Borchers CH, Wainwright CE, Wainwright BJ.
Clin Chem (2007) 53(10): 1782-91
Protein microarray platforms for clinical proteomics
Harvey B. Pollard, Meera Srivastava, Ofer Eidelman, Catherine Jozwik, Stephen W. Rothwell, Gregory P. Mueller, David M. Jacobowitz, Thomas Darling, William B. Guggino, Jerry Wright, Pamela L. Zeitlin, Cloud P. Paweletz
PROTEOMICS - CLINICAL APPLICATIONS (2007) 1(9): 934-952
Design of recombinant antibody microarrays for complex proteome analysis: Choice of sample labeling-tag and solid support
Christer Wingren, Johan Ingvarsson, Linda Dexlin, Dominika Szul, Carl A. K. Borrebaeck
PROTEOMICS (2007) 7(17): 3055-3065
Generation and characterization of hybridoma antibodies for immunotherapy of tularemia
Lu Z, Roche MI, Hui JH, Unal B, Felgner PL, Gulati S, Madico G, Sharon J.
Immunol Lett (2007) 112(2): 92-103
Antibody-based Proteomics: From bench to bedside
Sophie Dahan, Eric Chevet, Jian-Feng Liu, Michel Dominguez
PROTEOMICS - CLINICAL APPLICATIONS (2007) 1(9): 922-933
Charge Switch Derivatization of Phosphopeptides for Enhanced Surface-Enhanced Raman Spectroscopy and Mass Spectrometry Detection
H. Li, N. Sundararajan
Journal of Proteome Research (2007) 6(8): 2973-2977
High-throughput profiling of posttranslational modification enzymes by phage display
Yen M, Yin J.
Biotechniques (2007) 43(1): 35 passim
Analysis of the Rana catesbeiana tadpole tail fin proteome and phosphoproteome during T3-induced apoptosis: identification of a novel type I keratin
Domanski D, Helbing CC.
BMC Dev Biol (2007) 7(1): 94
Whole proteome analysis of post-translational modifications: Applications of mass-spectrometry for proteogenomic annotation
Gupta N, Tanner S, Jaitly N, Adkins JN, Lipton M, Edwards R, Romine M, Osterman A, Bafna V, Smith RD, Pevzner PA.
Genome Res (2007) 17(9): 1362-77
Post-Translational Modifications in the Rat Lumbar Spinal Cord in Experimental Autoimmune Encephalomyelitis
J.E. Grant, J. Hu, T. Liu, M.R. Jain, S. Elkabes, H. Li
Journal of Proteome Research (2007) 6(7): 2786-2791
Mass spectrometric characterization of the affinity-purified human 26S proteasome complex
Wang X, Chen CF, Baker PR, Chen PL, Kaiser P, Huang L
Biochemistry (2007) 46(11): 3553-65
Human spermatozoa contain multiple targets for protein S-nitrosylation: An alternative mechanism of the modulation of sperm function by nitric oxide?
Linda Lefièvre, Yongjian Chen, Sarah J. Conner, Joanna L. Scott, Steve J. Publicover, W. Christopher L. Ford, Christopher L. R. Barratt
PROTEOMICS (2007) 7(17): 3066-3084
Dynamic Activity of Lipid Droplets: Protein Phosphorylation and GTP-Mediated Protein Translocation
R. Bartz, J.K. Zehmer, M. Zhu, Y. Chen, G. Serrero, Y. Zhao, P. Liu
Journal of Proteome Research (2007) 6(8): 3256-3265
Mass Spectrometric Studies on Mouse Hippocampal Synapsins Ia, IIa, and IIb and Identification of a Novel Phosphorylation Site at Serine-546
J.P.P. John, W.-Q. Chen, A. Pollak, G. Lubec
Journal of Proteome Research (2007) 6(7): 2695-2710
Phosphoproteomics for the discovery of kinases as cancer biomarkers and drug targets
Li-Rong Yu, Haleem J. Issaq, Timothy D. Veenstra
PROTEOMICS - CLINICAL APPLICATIONS (2007) 1(9): 1042-1057
Quantitation of Multisite EGF Receptor Phosphorylation Using Mass Spectrometry and a Novel Normalization Approach
E. BoeriErba, R. Matthiesen, J. Bunkenborg, W.X. Schulze, P. DiStefano, S. Cabodi, G. Tarone, P. Defilippi, O.N. Jensen
Journal of Proteome Research (2007) 6(7): 2768-2785
Large-scale phosphorylation analysis of mouse liver
Villen J, Beausoleil SA, Gerber SA, Gygi SP
Proc Natl Acad Sci U S A (2007) 104(5): 1488-93
The GlycanBuilder: a fast, intuitive and flexible software tool for building and displaying glycan structures
Ceroni A, Dell A, Haslam SM.
Source Code Biol Med (2007) 2(1): 3
A serial lectin approach to the mucin-type O-glycoproteome of Drosophila melanogaster S2 cells
Tilo Schwientek, Ulla Mandel, Udo Roth, Stefan Müller, Franz-Georg Hanisch
PROTEOMICS (2007) 7(18): 3264-3277
Relative Specificities of Water and Ammonia Losses from Backbone Fragments in Collision-Activated Dissociation
M.M. Savitski, F. Kjeldsen, M.L. Nielsen, R.A. Zubarev
Journal of Proteome Research (2007) 6(7): 2669-2673
FGFR3 Activates RSK2 to Mediate Hematopoietic Transformation through Tyrosine Phosphorylation of RSK2 and Activation of the MEK/ERK Pathway
Kang S, Dong S, Gu TL, Guo A, Cohen MS, Lonial S, Khoury HJ, Fabbro D, Gilliland DG, Bergsagel PL, Taunton J, Polakiewicz RD, Chen J.
Cancer Cell (2007) 12(3): 201-14
A Differential Phosphoproteomic Analysis of Retinoic Acid-Treated P19 Cells
J.C. Smith, M.A. Duchesne, P. Tozzi, M. Ethier, D. Figeys
Journal of Proteome Research (2007) 6(8): 3174-3186
Phosphorylation of human eukaryotic elongation factor 1B? is regulated by paclitaxel
Miguel A. Prado, Pedro Casado, Pedro Zuazua-Villar, Eva del Valle, Noelia Artime, Lucía Cabal-Hierro, Carlos M. Martínez-Campa, Pedro S. Lazo, Sofía Ramos
PROTEOMICS (2007) 7(18): 3299-3304
ATM and ATR substrate analysis reveals extensive protein networks responsive to DNA damage
Matsuoka S, Ballif BA, Smogorzewska A, McDonald ER 3rd, Hurov KE, Luo J, Bakalarski CE, Zhao Z, Solimini N, Lerenthal Y, Shiloh Y, Gygi SP, Elledge SJ
Science (2007) 316(5828): 1160-6
Identification of membrane proteins by tandem mass spectrometry of protein ions
Carroll J, Altman MC, Fearnley IM, Walker JE.
Proc Natl Acad Sci U S A (2007) 104(36): 14330-5
Differential proteomic profiling of mitochondria from Podospora anserina, rat and human reveals distinct patterns of age-related oxidative changes
Groebe K, Krause F, Kunstmann B, Unterluggauer H, Reifschneider NH, Scheckhuber CQ, Sastri C, Stegmann W, Wozny W, Schwall GP, Poznanovic S, Dencher NA, Jansen-Durr P, Osiewacz HD, Schrattenholz A.
Exp Gerontol (2007) 42(9): 887-98
Neutral Loss-Based Phosphopeptide Recognition: A Collection of Caveats
W.D. Lehmann, R. Kruger, M. Salek, C.-W. Hung, F. Wolschin, W. Weckwerth
Journal of Proteome Research (2007) 6(7): 2866-2873
Systemic Analysis of Tyrosine Phosphorylated Proteins in Angiopoietin-1 Induced Signaling Pathway of Endothelial Cells
Y.M. Kim, J. Seo, Y.H. Kim, J. Jeong, H.J. Joo, D.-H. Lee, G.Y. Koh, K.-J. Lee
Journal of Proteome Research (2007) 6(8): 3278-3290
An Enzymatic Deglycosylation Scheme Enabling Identification of Core Fucosylated N-Glycans and O-Glycosylation Site Mapping of Human Plasma Proteins
P. Hagglund, R. Matthiesen, F. Elortza, P. Hojrup, P. Roepstorff, O.N. Jensen, J. Bunkenborg
Journal of Proteome Research (2007) 6(8): 3021-3031
Novel Tools for the Proteomic Identification of Acylated Proteins
Wirtz J, Kolter T.
Chembiochem (2007) 8(14): 1631-1635
Analysis of phosphorylation sites on proteins from Saccharomyces cerevisiae by electron transfer dissociation (ETD) mass spectrometry
Chi A, Huttenhower C, Geer LY, Coon JJ, Syka JE, Bai DL, Shabanowitz J, Burke DJ, Troyanskaya OG, Hunt DF
Proc Natl Acad Sci U S A (2007) 104(7): 2193-8
Nine steps to proteomic wisdom: A practical guide to using protein-protein interaction networks and molecular pathways as a framework for interpreting disease proteomic profiles
Ruth Isserlin, Andrew Emili
PROTEOMICS - CLINICAL APPLICATIONS (2007) 1(9): 1156-1168
Protein-Protein Interfaces: Properties, Preferences, and Projections
J.J. Headd, Y.E.A. Ban, P. Brown, H. Edelsbrunner, M. Vaidya, J. Rudolph
Journal of Proteome Research (2007) 6(7): 2576-2586
A Novel Proteomic Approach Identifies New Interaction Partners for Proliferating Cell Nuclear Antigen
Meslet-Cladiere L, Norais C, Kuhn J, Briffotaux J, Sloostra JW, Ferrari E, Hubscher U, Flament D, Myllykallio H.
J Mol Biol (2007) 372(5): 1137-48
Proteome-wide identification of family member-specific natural substrate repertoire of caspases
Ju W, Valencia CA, Pang H, Ke Y, Gao W, Dong B, Liu R.
Proc Natl Acad Sci U S A (2007) 104(36): 14294-9
Submit Your Interaction Data the IMEx Way: A Step by Step Guide to Trouble-free Deposition
Sandra Orchard, Samuel Kerrien, Philip Jones, Arnaud Ceol, Andrew Chatr-aryamontri, Lukasz Salwinski, Jason Nerothin, Henning Hermjakob
PROTEOMICS (2007) 7(S1): 28-34
A β-Galactosidase-Based Bacterial Two-Hybrid System To Assess Protein-Protein Interactions in the Correct Cellular Environment
J. Borloo, L. DeSmet, B. Vergauwen, J.J. VanBeeumen, B. Devreese
Journal of Proteome Research (2007) 6(7): 2587-2595
Plasticity and robustness of protein patterns during reversible development in the honey bee (Apis mellifera)
Wolschin F, Amdam GV.
Anal Bioanal Chem (2007) 389(4): 1095-100
Quantitative Proteomics Identifies Surfactant-Resistant {alpha}-Synuclein in Cerebral Cortex of Parkinsonism-Dementia Complex of Guam but Not Alzheimer's Disease or Progressive Supranuclear Palsy
Yang W, Woltjer RL, Sokal I, Pan C, Wang Y, Brodey M, Peskind ER, Leverenz JB, Zhang J, Perl DP, Galasko DR, Montine TJ.
Am J Pathol (2007) 171(3): 993-1002
Two-dimensional electrophoresis for comparative proteomic analysis of human bile
Chen B, Dong JQ, Chen YJ, Wang JM, Tian J, Wang CB, Zou SQ.
Hepatobiliary Pancreat Dis Int (2007) 6(4): 402-6
Targeted protein quantitation and profiling using PVDF affinity probe and MALDI-TOF MS
Shu-Hua Chen, Hsin-Kai Liao, Chih-Yang Chang, Chiun-Gung Juo, Jenn-Han Chen, Sunney I. Chan, Yu-Ju Chen
PROTEOMICS (2007) 7(17): 3038-3050
Relative quantitation of proteins fractionated by the ProteomeLabtrade mark PF 2D system using isobaric tags for relative and absolute quantitation (iTRAQ)
Skalnikova H, Rehulka P, Chmelik J, Martinkova J, Zilvarova M, Gadher SJ, Kovarova H.
Anal Bioanal Chem Early Edition: published 28-Aug-2007
A multiple reaction monitoring method for absolute quantification of the human liver alcohol dehydrogenase ADH1C1 isoenzyme
Janecki DJ, Bemis KG, Tegeler TJ, Sanghani PC, Zhai L, Hurley TD, Bosron WF, Wang M.
Anal Biochem (2007) 369(1): 18-26
Advances in proteomic workflows for systems biology
Malmstrom J, Lee H, Aebersold R.
Curr Opin Biotechnol (2007) 18(4): 378-84
Markers of breast and gynecological malignancies: The clinical approach of proteomics-based studies
Marta Lomnytska, Serhiy Souchelnytskyi
PROTEOMICS - CLINICAL APPLICATIONS (2007) 1(9): 1090-1101
High-performance Proteomics as a Tool in Biomarker Discovery
Helmut E. Meyer, Kai Stühler
PROTEOMICS (2007) 7(S1): 18-26
Separation-based Glycoprofiling Approaches using Fluorescent Labels
Paula Jane Domann, Ana Carmen Pardos-Pardos, Daryl Ludger Fernandes, Daniel Ian Richard Spencer, Catherine Mavis Radcliffe, Louise Royle, Raymond Allen Dwek, Pauline Mary Rudd
PROTEOMICS (2007) 7(S1): 70-76
Design and Analysis Issues in Quantitative Proteomics Studies
Natasha A. Karp, Kathryn S. Lilley
PROTEOMICS (2007) 7(S1): 42-50
Vascular proteomics
Fernando Vivanco, Sebastian Mas, Veronica M. Darde, Fernando De la Cuesta, Gloria Alvarez-Llamas, Maria G. Barderas
PROTEOMICS - CLINICAL APPLICATIONS (2007) 1(9): 1102-1122
Proteomic strategies to elucidate pathogenic mechanisms of spirochetes
Jarlath E. Nally, Julian P. Whitelegge, James A. Carroll
PROTEOMICS - CLINICAL APPLICATIONS (2007) 1(9): 1185-1197
Exploring the proteome of meningococcal outer membrane vesicle vaccines
Jun X. Wheeler, Caroline Vipond, Ian M. Feavers
PROTEOMICS - CLINICAL APPLICATIONS (2007) 1(9): 1198-1210
The state of the art in the analysis of two-dimensional gel electrophoresis images
Berth M, Moser FM, Kolbe M, Bernhardt J.
Appl Microbiol Biotechnol (2007) 76(6): 1223-43
Quantitative proteomics for identification of cancer biomarkers
Raghothama Chaerkady, Akhilesh Pandey
PROTEOMICS - CLINICAL APPLICATIONS (2007) 1(9): 1080-1089
Proteomics of integral membrane proteins-theory and application
Speers AE, Wu CC.
Chem Rev (2007) 107(8): 3687-714
Microbial proteomics: a mass spectrometry primer for biologists
Graham RL, Graham C, McMullan G.
Microb Cell Fact (2007) 6(1): 26
Organellar proteomics to create the cell map
Au CE, Bell AW, Gilchrist A, Hiding J, Nilsson T, Bergeron JJ.
Curr Opin Cell Biol (2007) 19(4): 376-85
Promoting Proteomics Knowledge in Europe: Report on the Activities of the EuPA Education Committee 2006 - 2007
Juan Pablo Albar, Garry L. Corthals, Concha Gil, Peter James, Ole N. Jensen, Patricia M. Palagi, Deborah Penque
PROTEOMICS (2007) 7(S1): 90-94
Renal transplant rejection markers
Gwinner W.
World J Urol (2007) 25(5): 445-55
Proteomic profiling of animal models mimicking skeletal muscle disorders
Philip Doran, Joan Gannon, Kathleen O'Connell, Kay Ohlendieck
PROTEOMICS - CLINICAL APPLICATIONS (2007) 1(9): 1169-1184
Extracting Protein Regulatory Networks with Graphical Models
Marco Grzegorczyk
PROTEOMICS (2007) 7(S1): 51-59
Hydroxyl radical-mediated modification of proteins as probes for structural proteomics
Xu G, Chance MR.
Chem Rev (2007) 107(8): 3514-43
The pancreatic cancer proteome - recent advances and future promise
Mark Aspinall-O'Dea, Eithne Costello
PROTEOMICS - CLINICAL APPLICATIONS (2007) 1(9): 1066-1079
Body fluid proteomics: Prospects for biomarker discovery
Sung-Min Ahn, Richard J. Simpson
PROTEOMICS - CLINICAL APPLICATIONS (2007) 1(9): 1004-1015
Elucidation of the molecular mechanisms of preeclampsia using proteomic technologies
Rose P. Webster, Leslie Myatt
PROTEOMICS - CLINICAL APPLICATIONS (2007) 1(9): 1147-1155
A better understanding of molecular mechanisms underlying human disease
José Bermúdez-Crespo, José Luis López
PROTEOMICS - CLINICAL APPLICATIONS (2007) 1(9): 983-1003
Advances in hyphenated analytical techniques for shotgun proteome and peptidome analysis--a review
Hu L, Ye M, Jiang X, Feng S, Zou H.
Anal Chim Acta (2007) 598(2): 193-204
Proteomics in cancer
Reymond MA, Schlegel W.
Adv Clin Chem (2007) 44: 103-42
Biomarkers for prostate cancer
Schiffer E.
World J Urol Early Edition: published 10-Aug-2007
Proteomics of filamentous fungi
Kim Y, Nandakumar MP, Marten MR.
Trends Biotechnol (2007) 25(9): 395-400
Frequently Made Mistakes in Electrophoresis
Reiner Westermeier
PROTEOMICS (2007) 7(S1): 60-63
Quantitative proteomic approaches for biomarker discovery
Zhiyuan Hu, Leroy Hood, Qiang Tian
PROTEOMICS - CLINICAL APPLICATIONS (2007) 1(9): 1036-1041
Confronting high-throughput protein refolding using high pressure and solution screens
Qoronfleh MW, Hesterberg LK, Seefeldt MB.
Protein Expr Purif (2007) 55(2): 209-24
Lysosomal proteomics and disease
David E. Sleat, Michel Jadot, Peter Lobel
PROTEOMICS - CLINICAL APPLICATIONS (2007) 1(9): 1134-1146
Lyophilization, a Practical Way to Store and Transport Tissues Prior to Protein Extraction for 2DE Analysis?
Sebastien C. Carpentier, Koen Dens, Ines Van den houwe, Rony Swennen, Bart Panis
PROTEOMICS (2007) 7(S1): 64-69
Avian proteomics: advances, challenges and new technologies
Doherty MK, McLean L, Beynon RJ.
Cytogenet Genome Res (2007) 117(1-4): 358-69
Proteomics in clinical prostate research
Magnus Hellström, Sara Jonmarker, Janne Lehtiö, Gert Auer, Lars Egevad
PROTEOMICS - CLINICAL APPLICATIONS (2007) 1(9): 1058-1065
Clinical proteomics in chronic inflammatory diseases: A review
Judith A. P. Bons, Marja P. van Dieijen-Visser, Will K. W. H. Wodzig
PROTEOMICS - CLINICAL APPLICATIONS (2007) 1(9): 1123-1133
An Update on Data Standards for Gel Electrophoresis
Andrew R Jones, Frank Gibson
PROTEOMICS (2007) 7(S1): 35-40
Clinical application of tear proteomics: Present and future prospects
Kaili Wu, Yanli Zhang
PROTEOMICS - CLINICAL APPLICATIONS (2007) 1(9): 972-982
How to Analyze Protein Complexes by 2D Blue Native SDS-PAGE
Veronika Reisinger, Lutz Andreas Eichacker
PROTEOMICS (2007) 7(S1): 6-16
Combination of peptide OFFGEL fractionation and label-free quantitation facilitated proteomics profiling of extraocular muscle
Sven Fraterman, Ulrike Zeiger, Tejvir S. Khurana, Neal A. Rubinstein, Matthias Wilm
PROTEOMICS (2007) 7(18): 3404-3416
Free-flow electrophoresis for purification of plant mitochondria by surface charge
Eubel H, Lee CP, Kuo J, Meyer EH, Taylor NL, Millar AH.
Plant J Early Edition: published 28-Aug-2007
Identification and Quantification of Basic and Acidic Proteins Using Solution-Based Two-Dimensional Protein Fractionation and Label-Free or 18O-Labeling Mass Spectrometry
W.W. Wu, G. Wang, M.-J. Yu, M.A. Knepper, R.-F. Shen
Journal of Proteome Research (2007) 6(7): 2447-2459
Mechanisms of Laser-Induced Dissection and Transport of Histologic Specimens
Vogel A, Lorenz K, Horneffer V, Huettmann G, von Smolinski D, Gebert A.
Biophys J Early Edition: published 31-Aug-2007
The resistance of metallothionein to proteolytic digestion: An LC-MS/MS analysis
Wang R, Sens DA, Garrett S, Somji S, Sens MA, Lu X.
Electrophoresis (2007) 28(16): 2942-2952
Ion Trap Collisional Activation of c and z• Ions Formed via Gas-Phase Ion/Ion Electron-Transfer Dissociation
H. Han, Y. Xia, S.A. McLuckey
Journal of Proteome Research (2007) 6(8): 3062-3069
Implications of Strain- and Species-Level Sequence Divergence for Community and Isolate Shotgun Proteomic Analysis
V.J. Denef, M.B. Shah, N.C. VerBerkmoes, R.L. Hettich, J.F. Banfield
Journal of Proteome Research (2007) 6(8): 3152-3161
Selective Isolation of N-Blocked Peptides by Isocyanate-Coupled Resin
Mikami T, Takao T.
Anal Chem Early Edition: published 14-Sep-2007
Simultaneous separation of anionic and cationic proteins by capillary electrophoresis using high concentration of poly(diallyldimethylammonium chloride) as an additive
Lin CY, Yu CJ, Chen YM, Chang HC, Tseng WL.
J Chromatogr A (2007) 1165(1-2): 219-25
Capillary Trap Column with Strong Cation-Exchange Monolith for Automated Shotgun Proteome Analysis
Wang F, Dong J, Jiang X, Ye M, Zou H.
Anal Chem (2007) 79(17): 6599-606
In vivo secretome sampling technology for proteomics
Chun-Ming Huang
PROTEOMICS - CLINICAL APPLICATIONS (2007) 1(9): 953-962
A Qit-q-Tof mass spectrometer for two-dimensional tandem mass spectrometry
Houle Wang, David S. Kennedy, Kerry D. Nugent, Gregory K. Taylor, David R. Goodlett
Rapid Communications in Mass Spectrometry (2007) 21(19): 3223-3226
Optimization of Mass Spectrometry-Compatible Surfactants for Shotgun Proteomics
E.I. Chen, D. Cociorva, J.L. Norris, J.R. Yates
Journal of Proteome Research (2007) 6(7): 2529-2538
An optimized procedure for solubilization, reduction, and transfer of human breast cancer membrane-enriched fraction by 2-DE
Yusong Ruan, Mingxi Wan
ELECTROPHORESIS (2007) 28(18): 3333-3340
Methods for pseudopodia purification and proteomic analysis
Wang Y, Ding SJ, Wang W, Yang F, Jacobs JM, Camp D 2nd, Smith RD, Klemke RL.
Sci STKE (2007) 2007(400): pl4
Identification of Vascular Surface Proteins by in Vivo Biotinylation: A Method Sufficiently Sensitive To Detect Changes in Rat Liver 2 Weeks after Partial Hepatectomy
L.A. McCann, M.C. Haywood, B.H. Ren, A.M. Simpson, M. Guilhaus, V.C. Wasinger, M.J. Raftery, R.A. Davey
Journal of Proteome Research (2007) 6(8): 3108-3113
New Method for Characterizing Highly Disulfide-Bridged Peptides in Complex Mixtures: Application to Toxin Identification from Crude Venoms
L. Quinton, K. Demeure, R. Dobson, N. Gilles, V. Gabelica, E. DePauw
Journal of Proteome Research (2007) 6(8): 3216-3223
Proteome Changes in Bovine Longissimus Thoracis Muscle During the Early Postmortem Storage Period
X. Jia, M. Ekman, H. Grove, E.M. Fargestad, L. Aass, K.I. Hildrum, K. Hollung
Journal of Proteome Research (2007) 6(7): 2720-2731
Sample Size and Replication in 2D Gel Electrophoresis Studies
G.W. Horgan
Journal of Proteome Research (2007) 6(7): 2884-2887
Higher-energy C-trap dissociation for peptide modification analysis
Olsen JV, Macek B, Lange O, Makarov A, Horning S, Mann M.
Nat Methods (2007) 4(9): 709-12
Peptide Shifter: Enhancing Separation Reproducibility Using Correlated Expression Profiles
Sitnikov D, Hunter JM, Hayward C, Eng K, Migneault I, Tessier S, Opiteck GJ, Kearney P.
J Am Soc Mass Spectrom (2007) 18(9): 1638-45
Direct On-Membrane Glycoproteomic Approach Using MALDI-TOF Mass Spectrometry Coupled with Microdispensing of Multiple Enzymes
S. Kimura, A. Kameyama, S. Nakaya, H. Ito, H. Narimatsu
Journal of Proteome Research (2007) 6(7): 2488-2494
Polymeric Inverse Micelles as Selective Peptide Extraction Agents for MALDI-MS Analysis
Combariza MY, Savariar EN, Vutukuri DR, Thayumanavan S, Vachet RW.
Anal Chem (2007) 79(18): 7124-30
Development of a titanium dioxide nanoparticle pipette-tip for the selective enrichment of phosphorylated peptides
Hsieh HC, Sheu C, Shi FK, Li DT.
J Chromatogr A (2007) 1165(1-2): 128-35
A Novel Approach to Identify Proteins Modified by Nitric Oxide: the HIS-TAG Switch Method
S. Camerini, M.L. Polci, U. Restuccia, V. Usuelli, A. Malgaroli, A. Bachi
Journal of Proteome Research (2007) 6(8): 3224-3231
Quantitative chemical proteomics reveals mechanisms of action of clinical ABL kinase inhibitors
Bantscheff M, Eberhard D, Abraham Y, Bastuck S, Boesche M, Hobson S, Mathieson T, Perrin J, Raida M, Rau C, Reader V, Sweetman G, Bauer A, Bouwmeester T, Hopf C, Kruse U, Neubauer G, Ramsden N, Rick J, Kuster B, Drewes G.
Nat Biotechnol (2007) 25(9): 1035-44
A Probabilistic Treatment of the Missing Spot Problem in 2D Gel Electrophoresis Experiments
M. Krogh, C. Fernandez, M. Teilum, S. Bengtsson, P. James
Journal of Proteome Research (2007) 6(8): 3335-3343
SELDI-TOF mass spectrometry of High-Density Lipoprotein
Levels JH, Bleijlevens B, Rezaee F, Aerts JM, Meijers JC.
Proteome Science (2007) 5(1): 15
Mass distribution, polydispersity, and focusing properties of carrier ampholytes for IEF. Part V: pH 9-11 interval
Carolina Simó, Attilio Citterio, Pier Giorgio Righetti
ELECTROPHORESIS (2007) 28(18): 3156-3162
Protein Desolvation in UV Matrix-Assisted Laser Desorption/Ionization (MALDI)
Sachon E, Clodic G, Blasco T, Bolbach G.
J Am Soc Mass Spectrom (2007) 18(10): 1880-90
New Candidate Targets of AMP-Activated Protein Kinase in Murine Brain Revealed by a Novel Multidimensional Substrate-Screen for Protein Kinases
R.D. Tuerk, R.F. Thali, Y. Auchli, H. Rechsteiner, R. Brunisholz, U. Schlattner, T. Wallimann, D. Neumann
Journal of Proteome Research (2007) 6(8): 3266-3277
Fragmentation of Multiply-Charged Intact Protein Ions Using MALDI TOF-TOF Mass Spectrometry
Liu Z, Schey KL.
J Am Soc Mass Spectrom Early Edition: published 20-Jun-2007
Ultrafast coelectrophoretic fluorescent staining of proteins with carbocyanines
Sylvie Luche, Cécile Lelong, Hélène Diemer, Alain Van Dorsselaer, Thierry Rabilloud
PROTEOMICS (2007) 7(18): 3234-3244
Improving the Diagnostic Accuracy of N-Terminal B-Type Natriuretic Peptide in Human Systolic Heart Failure by Plasma Profiling Using Mass Spectrometry
D.J.L. Jones, R. Willingale, P.A. Quinn, J.H. Lamb, P.B. Farmer, J.E. Davies, L.L. Ng
Journal of Proteome Research (2007) 6(8): 3329-3334
Comparison of Digestion Protocols for Microgram Quantities of Enriched Protein Samples
W.J. Hervey, M.B. Strader, G.B. Hurst
Journal of Proteome Research (2007) 6(8): 3054-3061
Diagnostic value of serum protein profiling by SELDI-TOF ProteinChip compared with a biochemical marker, FibroTest, for the diagnosis of advanced fibrosis in patients with chronic hepatitis C
Morra R, Munteanu M, Bedossa P, Dargere D, Janneau JL, Paradis V, Ratziu V, Charlotte F, Thibault V, Imbert-Bismut F, Poynard T.
Aliment Pharmacol Ther (2007) 26(6): 847-58
Protocol for micro-purification, enrichment, pre-fractionation and storage of peptides for proteomics using StageTips
Rappsilber J, Mann M, Ishihama Y.
Nat Protoc (2007) 2(8): 1896-906
An experimental correction for arginine-to-proline conversion artifacts in SILAC-based quantitative proteomics
Van Hoof D, Pinkse MW, Oostwaard DW, Mummery CL, Heck AJ, Krijgsveld J.
Nat Methods (2007) 4(9): 677-678
Metrological sharp shooting for plasma proteins and peptides: The need for reference materials for accurate measurements in clinical proteomics and in vitro diagnostics to generate reliable results
Frank Vitzthum, Gérard Siest, David M. Bunk, Tobias Preckel, Christian Wenz, Patric Hoerth, Peter Schulz-Knappe, Harald Tammen, Juergen Adamkiewicz, Giampaolo Merlini, N. Leigh Anderson
PROTEOMICS - CLINICAL APPLICATIONS (2007) 1(9): 1016-1035
Serum Peptide Profiling using MALDI Mass Spectrometry: Avoiding the Pitfalls of Coated Magnetic Beads using Well-established ZipTip Technology
Ali Tiss, Celia Smith, Stephane Camuzeaux, Musarat Kabir, Simon Gayther, Usha Menon, Mike Waterfield, John Timms, Ian Jacobs, Rainer Cramer
PROTEOMICS (2007) 7(S1): 77-89
Identification of Proteolytic Cleavage Sites by Quantitative Proteomics
M. Enoksson, J. Li, M.M. Ivancic, J.C. Timmer, E. Wildfang, A. Eroshkin, G.S. Salvesen, W.A. Tao
Journal of Proteome Research (2007) 6(7): 2850-2858
Improved Method for Proteome Mapping of the Liver by 2-DE MALDI-TOF MS
G. Gazzana, J. Borlak
Journal of Proteome Research (2007) 6(8): 3143-3151
Gel-free sample preparation for the nanoscale LC-MS/MS analysis and identification of low-nanogram protein samples
Gaspari M, Abbonante V, Cuda G.
J Sep Sci (2007) 30(14): 2210-2216
Multistrip Western blotting to increase quantitative data output
Edita Aksamitiene, Jan B. Hoek, Boris Kholodenko, Anatoly Kiyatkin
ELECTROPHORESIS (2007) 28(18): 3163-3173
Amino Acid Sequence Determination of Protein Biomarkers of Campylobacter upsaliensis and C. helveticus by "Composite" Sequence Proteomic Analysis
C.K. Fagerquist
Journal of Proteome Research (2007) 6(7): 2539-2549
Novel staining-free proteomic method for simultaneous identification of proteins and determination of their pI values by using low-molecular-mass pI markers
Josef Chmelík, Karel Mazanec, Karel ?lais
ELECTROPHORESIS (2007) 28(18): 3315-3323
Confronting high-throughput protein refolding using high pressure and solution screens
Qoronfleh MW, Hesterberg LK, Seefeldt MB.
Protein Expr Purif (2007) 55(2): 209-24
Nanotechnology in clinical proteomics
Geho DH, Luchini A, Garaci E, Belluco C, Petricoin E, Liotta LA.
Nanomed (2007) 2(1): 1-5
Book Review: Comparative Genomics and Proteomics in Drug Discovery. By John Parrington and Kevin Coward (Eds.)
Marc A. Reymond
PROTEOMICS (2007) 7(17): 3230
Book Review: Exploring the Human Plasma Proteome. By Gilbert Omenn (Ed.)
Giuliano Elia
PROTEOMICS (2007) 7(17): 3229-3230
Proteomics Data Collection - The 1st ProDaC workshop 26 April 2007 Ecole Normale Supérieur, Lyon, France
Martin Eisenacher, Tanja Hardt, Michael Hamacher, Lennart Martens, Jari Häkkinen, Fredrik Levander, Rolf Apweiler, Helmut E. Meyer, Christian Stephan
PROTEOMICS (2007) 7(17): 3034-3037
Meetings Diary: Proteomics 17/2007
PROTEOMICS (2007) 7(17): 3230
Focus on proteomics
Lehmann WD.
Anal Bioanal Chem (2007) 389(4): 989
Is proteomics the new genomics?
Cox J, Mann M.
Cell (2007) 130(3): 395-8
The minimum information about a proteomics experiment (MIAPE)
Taylor CF, Paton NW, Lilley KS, Binz PA, Julian RK Jr, Jones AR, Zhu W, Apweiler R, Aebersold R, Deutsch EW, Dunn MJ, Heck AJ, Leitner A, Macht M, Mann M, Martens L, Neubert TA, Patterson SD, Ping P, Seymour SL, Souda P, Tsugita A, Vandekerckhove J, Vondriska TM, Whitelegge JP, Wilkins MR, Xenarios I, Yates JR 3rd, Hermjakob H.
Nat Biotechnol (2007) 25(8): 887-93
Application of proteomics to ecology and population biology
Karr TL.
Heredity Early Edition: published 15-Aug-2007