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SPS' DigestIssue 46, 5-Nov-2007 |
Statistical identification of differentially labeled peptides from liquid chromatography tandem mass spectrometry
HyungJun Cho, David M. Smalley, Dan Theodorescu, Klaus Ley, Jae K. Lee
PROTEOMICS (2007) 7(20): 3681-3692
TandTRAQ: An open-source tool for integrated protein identification and quantitation
Laderas T, Bystrom C, McMillen D, Fan G, McWeeney S.
Bioinformatics Early Edition: published 25-Sep-2007
Pixel-based analysis of multiple images for the identification of changes: A novel approach applied to unravel proteome patters of 2-D electrophoresis gel images
Ellen Mosleth Fćrgestad, Morten Rye, Beata Walczak, Lars Gidskehaug, Jens Petter Wold, Harald Grove, Xiaohong Jia, Kristin Hollung, Ulf G. Indahl, Frank Westad, Frans van den Berg, Harald Martens
PROTEOMICS (2007) 7(19): 3450-3461
InSite: a computational method for identifying protein-protein interaction binding sites on a proteome-wide scale
Wang H, Segal E, Ben-Hur A, Li Q, Vidal M, Koller D.
Genome Biol (2007) 8(9): R192
Bayesian Analysis of Mass Spectrometry Proteomic Data Using Wavelet-Based Functional Mixed Models
Morris JS, Brown PJ, Herrick RC, Baggerly KA, Coombes KR.
Biometrics Early Edition: published 20-Sep-2007
SuperHirn - a novel tool for high resolution LC-MS-based peptide/protein profiling
Lukas N. Mueller, Oliver Rinner, Alexander Schmidt, Simon Letarte, Bernd Bodenmiller, Mi-Youn Brusniak, Olga Vitek, Ruedi Aebersold, Markus Müller
PROTEOMICS (2007) 7(19): 3470-3480
Protein solubility: sequence based prediction and experimental verification
Pawel Smialowski, Antonio J. Martin-Galiano, Aleksandra Mikolajka, Tobias Girschick, Tad A. Holak, and Dmitrij Frishman
Bioinformatics (2007) 23(19): 2536-2542
Computational methods for the comparative quantification of proteins in label-free LCn-MS experiments
Wong JW, Sullivan MJ, Cagney G.
Brief Bioinform Early Edition: published 28-Sep-2007
Using a Poisson approximation to predict the isotopic distribution of sulphur-containing peptides in a peptide-centric proteomic approach
Valkenborg D, Assam P, Thomas G, Krols L, Kas K, Burzykowski T.
Rapid Commun Mass Spectrom (2007) 21(20): 3387-3391
Improved model-based, platform-independent feature extraction for mass spectrometry
Karin Noy and Daniel Fasulo
Bioinformatics (2007) 23(19): 2528-2535
Synthetic gel of carotid artery plaque
Terzuoli L, Felici C, Ciari I, Guerranti R, Pagani R, Marinello E, Porcelli B.
Int J Immunopathol Pharmacol (2007) 20(3): 639-45
Construction of an open-access database that integrates cross-reference information from the transcriptome and proteome of immune cells
Hijikata A, Kitamura H, Kimura Y, Yokoyama R, Aiba Y, Bao Y, Fujita S, Hase K, Hori S, Kanagawa O, Kawamoto H, Kawano K, Koseki H, Kubo M, Kurita Miki A, Kurosaki T, Masuda K, Nakata M, Oboki K, Ohno H, Okamoto M, Okayama Y, O-Wang J, Saito H, Saito T, Sakuma M, Sato K, Sato K, Seino KI, Setoguchi R, Tamura Y, Tanaka M, Taniguchi M, Taniuchi I, Teng A, Watanabe T, Watarai H, Yamasaki S, Ohara O.
Bioinformatics Early Edition: published 25-Sep-2007
CIDB: Chlamydia Interactive Database for cross-querying genomics, transcriptomics and proteomics data
Chen Y, Timms P, Chen YP.
Biomol Eng Early Edition: published 19-Aug-2007
2DBase: 2D-PAGE database of Escherichia coli
Vijayendran C, Burgemeister S, Friehs K, Niehaus K, Flaschel E.
Biochem Biophys Res Commun (2007) 363(3): 822-7
Computational and experimental approaches assess the interactions between bovine beta-lactoglobulin and synthetic compounds of pharmacological interest
Eberini I, Rocco AG, Mantegazza M, Gianazza E, Baroni A, Vilardo MC, Donghi D, Galliano M, Beringhelli T.
J Mol Graph Model Early Edition: published 30-Aug-2007
The effects of mass accuracy, data acquisition speed, and search algorithm choice on peptide identification rates in phosphoproteomics
Bakalarski CE, Haas W, Dephoure NE, Gygi SP.
Anal Bioanal Chem (2007) 389(5): 1409-19
A parsimonious threshold-independent protein feature selection method through the area under receiver operating characteristic curve
Wang Z, Chang YC, Ying Z, Zhu L, Yang Y.
Bioinformatics Early Edition: published 18-Sep-2007
How to distinguish healthy from diseased? Classification strategy for mass spectrometry-based clinical proteomics
Margriet M. W. B. Hendriks, Suzanne Smit, Wies L. M. W. Akkermans, Theo H. Reijmers, Paul H. C. Eilers, Huub C. J. Hoefsloot, Carina M. Rubingh, Chris G. de Koster, Johannes M. Aerts, Age K. Smilde
PROTEOMICS (2007) 7(20): 3672-3680
Accurate mass as a bioinformatic parameter in data-to-knowledge conversion: Fourier transform ion cyclotron resonance mass spectrometry for peptide de novo sequencing
Spengler B.
Eur J Mass Spectrom (Chichester, Eng) (2007) 13(1): 83-7
Exploration of the omics evidence landscape: adding qualitative labels to predicted protein-protein interactions
van Noort V, Snel B, Huynen MA.
Genome Biol (2007) 8(9): R197
An error model for protein quantification
C. Kreutz, M.M. Bartolome Rodriguez, T. Maiwald, M. Seidl, H.E. Blum, L. Mohr, and J. Timmer
Bioinformatics (2007) 23(20): 2747-2753
Proteomic analysis of calcium-dependent secretion in Toxoplasma gondii
Osamu Kawase, Yoshifumi Nishikawa, Hiroshi Bannai, Houshuang Zhang, Guohong Zhang, Shigeki Jin, Eung-Goo Lee, Xuenan Xuan
PROTEOMICS (2007) 7(20): 3718-3725
Wheat (Triticum aestivum L.) root proteome and differentially expressed root proteins between hybrid and parents
Xiao Song, Zhongfu Ni, Yingyin Yao, Chaojie Xie, Zhenxing Li, Haiyan Wu, Yinhong Zhang, Qixin Sun
PROTEOMICS (2007) 7(19): 3538-3557
Proteomics Analysis of Interleukin (IL)-7-induced Signaling Effectors Shows Selective Changes in IL-7R{alpha}449F Knock-in T Cell Progenitors
Kia A. Duthie, Lisa C. Osborne, Leonard J. Foster, and Ninan Abraham
Mol Cell Proteomics (2007) 6(10): 1700-1710
A proteomic approach to the identification of salivary proteins from the argasid ticks Ornithodoros moubata and Ornithodoros erraticus
Oleaga A, Escudero-Poblacion A, Camafeita E, Perez-Sanchez R.
Insect Biochem Mol Biol (2007) 37(11): 1149-59
Selective Anchoring of TFIID to Nucleosomes by Trimethylation of Histone H3 Lysine 4
Vermeulen M, Mulder KW, Denissov S, Pijnappel WW, van Schaik FM, Varier RA, Baltissen MP, Stunnenberg HG, Mann M, Timmers HT.
Cell (2007) 131(1): 58-69
Composition of the Synaptic PSD-95 Complex
Ayse Dosemeci, Anthony J. Makusky, Ewa Jankowska-Stephens, Xiaoyu Yang, Douglas J. Slotta, and Sanford P. Markey
Mol Cell Proteomics (2007) 6(10): 1749-1760
Effect of 2,3,7,8-tetrachlorodibenzo-p-dioxin on testicular spermatogenesis-related panels and serum sex hormone levels in rats
Choi JS, Kim IW, Hwang SY, Shin BJ, Kim SK.
BJU Int Early Edition: published 14-Sep-2007
A two-dimensional proteome reference map of Herbaspirillum seropedicae proteins
Daniela Fojo Seixas Chaves, Pércio Pereira Ferrer, Emanuel Maltempi de Souza, Leonardo Magalhăes Gruz, Rose Adele Monteiro, Fábio de Oliveira Pedrosa
PROTEOMICS (2007) 7(20): 3759-3763
Proteomics Identification of Proteins in Human Cortex Using Multidimensional Separations and MALDI Tandem Mass Spectrometer
Sheng Pan, Min Shi, Jinghua Jin, Roger L. Albin, Andy Lieberman, MarlaGearing, Biaoyang Lin, Catherine Pan, Xiaowei Yan, Daniel T. Kashima, and Jing Zhang
Mol Cell Proteomics (2007) 6(10): 1818-1823
A proteomic study on postdiapaused embryonic development of brine shrimp (Artemia franciscana)
Weiwei Wang, Bo Meng, Weihua Chen, Xiaomeng Ge, Siqi Liu, Jun Yu
PROTEOMICS (2007) 7(19): 3580-3591
Studies on the glutathione S-transferase proteome of adult Drosophila melanogaster: Responsiveness to chemical challenge
Zazali Alias, Alan G. Clark
PROTEOMICS (2007) 7(19): 3618-3628
Oligodendrocytes secrete exosomes containing major myelin and stress-protective proteins: Trophic support for axons?
Eva-Maria Krämer-Albers, Niko Bretz, Stefan Tenzer, Christine Winterstein, Wiebke Möbius, Hendrik Berger, Klaus-Armin Nave, Hansjörg Schild, Jacqueline Trotter
PROTEOMICS - CLINICAL APPLICATIONS (2007) 1(11): 1446-1461
Alternative and effective proteomic analysis in Arabidopsis
Christelle Espagne, Aude Martinez, Benoît Valot, Thierry Meinnel, Carmela Giglione
PROTEOMICS (2007) 7(20): 3788-3799
Mass spectrometric approaches for elucidation of antigenantibody recognition structures in molecular immunology
Stefanescu R, Iacob RE, Damoc EN, Marquardt A, Amstalden E, Manea M, Perdivara I, Maftei M, Paraschiv G, Przybylski M.
Eur J Mass Spectrom (Chichester, Eng) (2007) 13(1): 69-75
Proteomic strategies for rapid characterization of micro-organisms
Fenselau C, Russell S, Swatkoski S, Edwards N.
Eur J Mass Spectrom (Chichester, Eng) (2007) 13(1): 35-9
Analysis of differently expressed proteins and transcripts in gills of Penaeus vannamei after yellow head virus infection
Triwit Rattanarojpong, Hao-Ching Wang, Chu-Fang Lo, Timothy W. Flegel
PROTEOMICS (2007) 7(20): 3809-3814
Proteome of the Escherichia coli envelope and technological challenges in membrane proteome analysis
Weiner JH, Li L.
Biochim Biophys Acta Early Edition: published 11-Aug-2007
A proteomics strategy for the analysis of bacterial biodegradation pathways
Kim SI, Choi JS, Kahng HY.
OMICS (2007) 11(3): 280-94
Retooling Leishmania metabolism: from sand fly gut to human macrophage
Rosenzweig D, Smith D, Opperdoes F, Stern S, Olafson RW, Zilberstein D.
FASEB J Early Edition: published 20-Sep-2007
Proteomic analysis of differentially expressed proteins in Penaeus vannamei hemocytes upon Taura syndrome virus infection
Phattara-orn Chongsatja, Apichai Bourchookarn, Chu Fang Lo, Visith Thongboonkerd, Chartchai Krittanai
PROTEOMICS (2007) 7(19): 3592-3601
A hydrophobic ligand-binding protein of the Taenia solium metacestode mediates uptake of the host lipid: Implication for the maintenance of parasitic cellular homeostasis
Eung-Goo Lee, Seon-Hee Kim, Young-An Bae, Joon-Yong Chung, Myungkoo Suh, Byoung-Kuk Na, Tong-Soo Kim, Insug Kang, Liang Ma, Yoon Kong
PROTEOMICS (2007) 7(21): 4016-4030
Comparative proteomic analysis of primary mouse liver c-Kit(-)(CD45/TER119)(-) stem/progenitor cells
He YF, Liu YK, Lu HJ, Chen J, Yang PY.
J Cell Biochem (2007) 102(4): 936-46
Identification of new high mobility group A1 associated proteins
Giovanna Maria Pierantoni, Francesco Esposito, Stéphane Giraud, Willy Vincent Bienvenut, Jean Jacques Diaz, Alfredo Fusco
PROTEOMICS (2007) 7(20): 3735-3742
Partial characterization of the proteome of the mouse striatum
Ling T. Guo, Theodore Friedmann, Charles C. King
PROTEOMICS (2007) 7(21): 3867-3869
Differential expression of peroxiredoxin 6 in fetal rat testis following in utero exposure to di(nbutyl) phthalate
Zhang W, Shen H, Ma L, Shen B, Xu Z, Wang X.
Toxicology (2007) 240(1-2): 86-95
Proteome map of the normal murine ventricular myocardium
Lien Lam, Jonathan Arthur, Christopher Semsarian
PROTEOMICS (2007) 7(19): 3629-3633
Proteomic analysis of metacyclic trypomastigotes undergoing Trypanosoma cruzi metacyclogenesis
A. Parodi-Talice, V. Monteiro-Goes, N. Arrambide, A. R. Avila, R. Duran, A. Correa, B. Dallagiovanna, A. Cayota, M. Krieger, S. Goldenberg, C. Robello
Journal of Mass Spectrometry (2007) 42(11): 1422-1432
A novel late embryogenesis abundant protein and peroxidase associated with black point in barley grains
Timothy J. March, Jason A. Able, Carolyn J. Schultz, Amanda J. Able
PROTEOMICS (2007) 7(20): 3800-3808
Proteomic analysis reveals metabolic changes during yeast to hypha transition in Yarrowia lipolytica
Matías Morín, Lucía Monteoliva, María Insenser, Concha Gil, Ángel Domínguez
Journal of Mass Spectrometry (2007) 42(11): 1453-1462
Glutamine Regulates the Human Epithelial Intestinal HCT-8 Cell Proteome under Apoptotic Conditions
Nicolas Deniel, Rachel Marion-Letellier, Roland Charlionet, Francois Tron, Jerome Leprince, Hubert Vaudry, Philippe Ducrotte, Pierre Dechelotte, and Sandrine Thebault
Mol Cell Proteomics (2007) 6(10): 1671-1679
Revealing differentially expressed proteins in two morphological forms of Spirulina platensis by proteomic analysis
Hongsthong A, Sirijuntarut M, Prommeenate P, Thammathorn S, Bunnag B, Cheevadhanarak S, Tanticharoen M.
Mol Biotechnol (2007) 36(2): 123-130
Mass fingerprinting of toxic fractions from the venom of the Indian red scorpion, Mesobuthus tamulus: biotope-specific variation in the expression of venom peptides
Kirsti A. Newton, Malcolm R. Clench, Ranjana Deshmukh, Kandiah Jeyaseelan, Peter N. Strong
Rapid Communications in Mass Spectrometry (2007) 21(21): 3467-3476
EHD1 interacts with retromer to stabilise SNX1-tubules and facilitate endosome-to-Golgi retrieval
Gokool S, Tattersall D, Seaman MN.
Traffic Early Edition: published 14-Sep-2007
LC-MSMS identification of Arabidopsis thaliana heat-stable seed proteins: Enriching for LEA-type proteins by acid treatment
E. Oliveira, I. Amara, D. Bellido, M. A. Odena, E. Domínguez, M. Pagčs, A. Goday
Journal of Mass Spectrometry (2007) 42(11): 1485-1495
Proteomic analysis of a diabetic congenic rat identified age-dependent alteration of an acidic protein
Shono S, Kose H, Yamada T, Matsumoto K.
J Med Invest (2007) 54(3-4): 289-94
Hypoxia influences the cellular cross-talk of human dermal fibroblasts. A proteomic approach
Boraldi F, Annovi G, Carraro F, Naldini A, Tiozzo R, Sommer P, Quaglino D.
Biochim Biophys Acta Early Edition: published 22-Aug-2007
Proteomic Advances in Phytopathogenic Fungi
Fernandez-Acero, Francisco J.; Carbu, Maria; Garrido, Carlos; Vallejo, Inmaculada; Cantoral, Jesus M.a.n.u.e.l.
Current Proteomics (2007) 4(2): 79-88
Dihydroxyacetone-induced death is accompanied by advanced glycation endproduct formation in selected proteins of Saccharomyces cerevisiae and Caenorhabditis elegans
Mikael Molin, Marc Pilon, Anders Blomberg
PROTEOMICS (2007) 7(20): 3764-3774
Human Immunodeficiency Virus Type 1 Nef protein modulates the lipid composition of virions and host cell membrane microdomains
Brugger B, Krautkramer E, Tibroni N, Munte CE, Rauch S, Leibrecht I, Glass B, Breuer S, Geyer M, Krausslich HG, Kalbitzer HR, Wieland FT, Fackler OT.
Retrovirology (2007) 4(1): 70
Proteomic Analysis of Shade-Avoidance Response in Tomato Leaves
Hattrup E, Neilson KA, Breci L, Haynes PA.
J Agric Food Chem (2007) 55(21): 8310-8
Proteomic analysis of somatic embryogenesis in Vitis vinifera
Marsoni M, Bracale M, Espen L, Prinsi B, Negri AS, Vannini C.
Plant Cell Rep Early Edition: published 15-Sep-2007
Comparative proteomes of Corynebacterium glutamicum grown on aromatic compounds revealed novel proteins involved in aromatic degradation and a clear link between aromatic catabolism and gluconeogenesis via fructose-1,6-bisphosphatase
Su-Wei Qi, Muhammad Tausif Chaudhry, Yun Zhang, Bo Meng, Yan Huang, K.-X. Zhao, Ansgar Poetsch, Cheng-Ying Jiang, Siqi Liu, Shuang-Jiang Liu
PROTEOMICS (2007) 7(20): 3775-3787
Membrane subproteomic analysis of Mycobacterium bovis bacillus Calmette-Guérin
Jianhua Zheng, Candong Wei, Wenchuan Leng, Jie Dong, Rui Li, Weijun Li, Jin Wang, Zongde Zhang, Qi Jin
PROTEOMICS (2007) 7(21): 3919-3931
Comparative analysis of gene expression on mRNA and protein level during development of Streptomyces cultures by using singular value decomposition
Jiri Vohradsky, Pavel Branny, Charles J. Thompson
PROTEOMICS (2007) 7(21): 3853-3866
Alpha-fetoprotein is dynamically expressed in rat pancreas during development
Liu L, Guo J, Yuan L, Cheng M, Cao L, Shi H, Tong H, Wang N, De W.
Dev Growth Differ (2007) 49(8): 669-81
CIDB: Chlamydia Interactive Database for cross-querying genomics, transcriptomics and proteomics data
Chen Y, Timms P, Chen YP.
Biomol Eng Early Edition: published 19-Aug-2007
Proteome, salicylic acid, and jasmonic acid changes in cucumber plants inoculated with Trichoderma asperellum strain T34
Guillem Segarra, Eva Casanova, David Bellido, Maria Antonia Odena, Eliandre Oliveira, Isabel Trillas
PROTEOMICS (2007) 7(21): 3943-3952
Physiological and protein profiles alternation of germinating rice seedlings exposed to acute cadmium toxicity
Ahsan N, Lee SH, Lee DG, Lee H, Lee SW, Bahk JD, Lee BH.
C R Biol (2007) 330(10): 735-46
Circadian proteomics of the mouse retina
Takahiro Tsuji, Tsuyoshi Hirota, Nobuaki Takemori, Naoka Komori, Hikari Yoshitane, Masafumi Fukuda, Hiroyuki Matsumoto, Yoshitaka Fukada
PROTEOMICS (2007) 7(19): 3500-3508
Comparative quantitative proteomics to investigate the remodeling of bioenergetic pathways under iron deficiency in Chlamydomonas reinhardtii
Bianca Naumann, Andreas Busch, Jens Allmer, Elisabeth Ostendorf, Martin Zeller, Helmut Kirchhoff, Michael Hippler
PROTEOMICS (2007) 7(21): 3964-3979
Proteomic Analysis of Human Cerebral Endothelial Cells Activated by Multiple Sclerosis Serum and IFNbeta-1b
Alexander JS, Minagar A, Harper M, Robinson-Jackson S, Jennings M, Smith SJ.
J Mol Neurosci (2007) 32(3): 169-78
Plant organelle proteomics
Lilley KS, Dupree P.
Curr Opin Plant Biol Early Edition: published 1-Oct-2007
Proteomic analysis of embryonic stem cell-derived neural cells exposed to the antidepressant paroxetine
McHugh PC, Rogers GR, Loudon B, Glubb DM, Joyce PR, Kennedy MA.
J Neurosci Res Early Edition: published 14-Sep-2007
Integral and Associated Lysosomal Membrane Proteins
Schroder B, Wrocklage C, Pan C, Jager R, Kosters B, Schafer H, Elsasser HP, Mann M, Hasilik A.
Traffic Early Edition: published 26-Sep-2007
Cellular Responses and Proteomic Analysis of Escherichia coli Exposed to Green Tea Polyphenols
Cho YS, Schiller NL, Kahng HY, Oh KH.
Curr Microbiol (2007) 55(6): 501-6
The chicken egg white proteome
Karlheinz Mann
PROTEOMICS (2007) 7(19): 3558-3568
Protein Changes in the Albedo of Citrus Fruits on Postharvesting Storage
Lliso I, Tadeo FR, Phinney BS, Wilkerson CG, Talon M.
J Agric Food Chem (2007) 55(22): 9047-53
Pro-oxidative DEP chemicals induce heat shock proteins and an unfolding protein response in a bronchial epithelial cell line as determined by DIGE analysis
EunMi Juliana Jung, Nuraly K. Avliyakulov, Pinmanee Boontheung, Joseph A. Loo, Andre E. Nel
PROTEOMICS (2007) 7(21): 3906-3918
Differential analysis of Bacillus anthracis after pX01 plasmid curing and comprehensive data on Bacillus anthracis infection in macrophages and glial cells
Sung-Ha Park, Hee-Bok Oh, Won-Keun Seong, Chan-Wha Kim, Sang-Yun Cho, Cheon-Kwon Yoo
PROTEOMICS (2007) 7(20): 3743-3758
Fruit flies and the sperm proteome
Karr TL.
Hum Mol Genet (2007) 16 Spec No 2: R124-33.
Differentially expressed nuclear proteins in human CCRF-CEM, HL-60, MEC-1 and Raji cells correlate with cellular properties
Silke Henrich, Ben Crossett, Richard I. Christopherson
PROTEOMICS - CLINICAL APPLICATIONS (2007) 1(10): 1252-1265
Proteomic profiling of a parasitic wasp exposed to constant and fluctuating cold exposure
Colinet H, Nguyen TT, Cloutier C, Michaud D, Hance T.
Insect Biochem Mol Biol (2007) 37(11): 1177-1188
Proteomic analysis of the amyloid precursor protein fragment C99: expression in yeast
Sparvero LJ, Patz S, Brodsky JL, Coughlan CM.
Anal Biochem (2007) 370(2): 162-70
Temporal Analysis of Sucrose-induced Phosphorylation Changes in Plasma Membrane Proteins of Arabidopsis
Totte Niittyla, Anja T. Fuglsang, Michael G. Palmgren, Wolf B. Frommer, and Waltraud X. Schulze
Mol Cell Proteomics (2007) 6(10): 1711-1726
Identification of Two Proteins Associated with Mammalian ATP Synthase
Bjorn Meyer, Ilka Wittig, Elisabeth Trifilieff, Michael Karas, and Hermann Schagger
Mol Cell Proteomics (2007) 6(10): 1690-1699
Host-extract induced changes in the secretome of the plant pathogenic bacterium Pectobacterium atrosepticum
Laura Mattinen, Riitta Nissinen, Tero Riipi, Nisse Kalkkinen, Minna Pirhonen
PROTEOMICS (2007) 7(19): 3527-3537
The hippocampal protein machinery varies over the estrous cycle
Wei-Fei Diao, Wei-Qiang Chen, Harald Höger, Ki Shuk Shim, Arnold Pollak, Gert Lubec
PROTEOMICS - CLINICAL APPLICATIONS (2007) 1(11): 1462-1475
Proteomic analysis of the cortisol-mediated stress response in THP-1 monocytes using DIGE technology
Anja M. Billing, Fred Fack, Jenny Renaut, Christophe M. Olinger, Andrea B. Schote, Jonathan D. Turner, Claude P. Muller
Journal of Mass Spectrometry (2007) 42(11): 1433-1444
Proteomics analysis of hypothalamic response to energy restriction in dairy cows
Björn Kuhla, Siegfried Kuhla, Paul Eberhard Rudolph, Dirk Albrecht, Cornelia C. Metges
PROTEOMICS (2007) 7(19): 3602-3617
Distinct roles of the pepper hypersensitive induced reaction protein gene CaHIR1 in disease and osmotic stress, as determined by comparative transcriptome and proteome analyses
Jung HW, Lim CW, Lee SC, Choi HW, Hwang CH, Hwang BK.
Planta Early Edition: published 27-Sep-2007
Elucidating the Secretion Proteome of Human Embryonic Stem Cell-derived Mesenchymal Stem Cells
Siu Kwan Sze, Dominique P. V. de Kleijn, Ruenn Chai Lai, Eileen Khia Way Tan, Hui Zhao, Keng Suan Yeo, Teck Yew Low, Qizhou Lian, Chuen Neng Lee, Wayne Mitchell, Reida Menshawe El Oakley, and Sai-Kiang Lim
Mol Cell Proteomics (2007) 6(10): 1680-1689
Aerobic L-ascorbate metabolism and associated oxidative stress in Escherichia coli
Campos E, Montella C, Garces F, Baldoma L, Aguilar J, Badia J.
Microbiology (2007) 153(Pt 10): 3399-408
Comparative proteomic analysis of NaCl stress-responsive proteins in Arabidopsis roots
Jiang Y, Yang B, Harris NS, Deyholos MK.
J Exp Bot Early Edition: published 4-Oct-2007
Membrane proteins from the cyanobacterium Synechocystis sp. PCC 6803 interacting with thioredoxin
Alejandro Mata-Cabana, Francisco J. Florencio, Marika Lindahl
PROTEOMICS (2007) 7(21): 3953-3963
Proteomic characterization of the site-dependent functional difference in the rat small intestine
Iiizumi G, Sadoya Y, Hino S, Shibuya N, Kawabata H.
Biochim Biophys Acta (2007) 1774(10): 1289-98
Abnormal pathways in the genu of the corpus callosum in schizophrenia pathogenesis: a proteome study
Sinthuja Sivagnanasundaram, Ben Crossett, Irina Dedova, Stuart Cordwell, Izuru Matsumoto
PROTEOMICS - CLINICAL APPLICATIONS (2007) 1(10): 1291-1305
The use of isobaric tag peptide labeling (iTRAQ) and mass spectrometry to examine rare, primitive hematopoietic cells from patients with chronic myeloid leukemia
Griffiths SD, Burthem J, Unwin RD, Holyoake TL, Melo JV, Lucas GS, Whetton AD.
Mol Biotechnol (2007) 36(2): 81-9
Proteomic analysis of ovomucoid hypersensitivity in mice by two-dimensional difference gel electrophoresis (2D-DIGE)
Hobson DJ, Rupa P, Diaz GJ, Zhang H, Yang M, Mine Y, Turner PV, Kirby GM.
Food Chem Toxicol (2007) 45(12): 2372-80
Desmin is oxidized and nitrated in affected muscles in myotilinopathies and desminopathies
Janue A, Odena MA, Oliveira E, Olive M, Ferrer I.
J Neuropathol Exp Neurol (2007) 66(8): 711-23
Serum proteomics of lung adenocarcinomas induced by targeted overexpression of c-raf in alveolar epithelium identifies candidate biomarkers
Bijon Chatterji, Jürgen Borlak
PROTEOMICS (2007) 7(21): 3980-3991
OC143: Proteomic analysis of mid-trimester amniotic fluid for identification of subclinical intra-amniotic inflammation followed by preterm birth
Bamberg C, Thomas A, Schaller G, Bollmann R, Dudenhausen J, Kalache KD.
Ultrasound Obstet Gynecol (2007) 30(4): 411
Comparative proteomic analysis of human adenomyosis using two-dimensional gel electrophoresis and mass spectrometry
Liu H, Lang J, Wang X, Wu S.
Fertil Steril Early Edition: published 18-Sep-2007
Disease proteomics reveals altered basic gene expression regulation in leukocytes of Normal-Tension and Primary Open-Angle glaucoma patients
Olga Golubnitschaja, Kristina Yeghiazaryan, Kerstin Wunderlich, Hans H. Schild, Josef Flammer
PROTEOMICS - CLINICAL APPLICATIONS (2007) 1(10): 1316-1323
Diagnostic accuracy of MALDI mass spectrometric analysis of unfractionated serum in lung cancer
Yildiz PB, Shyr Y, Rahman JS, Wardwell NR, Zimmerman LJ, Shakhtour B, Gray WH, Chen S, Li M, Roder H, Liebler DC, Bigbee WL, Siegfried JM, Weissfeld JL, Gonzalez AL, Ninan M, Johnson DH, Carbone DP, Caprioli RM, Massion PP.
J Thorac Oncol (2007) 2(10): 893-901
Sex difference in ischemic acute renal failure in rats: approach by proteomic analysis
Takayama J, Takaoka M, Sugino Y, Yamamoto Y, Ohkita M, Matsumura Y.
Biol Pharm Bull (2007) 30(10): 1905-12
Proteomics from the clinical perspective: many hopes and much debate
Beretta L.
Nat Methods (2007) 4(10): 785-6
Synthetic gel of carotid artery plaque
Terzuoli L, Felici C, Ciari I, Guerranti R, Pagani R, Marinello E, Porcelli B.
Int J Immunopathol Pharmacol (2007) 20(3): 639-45
Comprehensive identification of proteins in Hodgkin lymphoma-derived Reed-Sternberg cells by LC-MS/MS
Wallentine JC, Kim KK, Iii CE, Vaughn CP, Crockett DK, Tripp SR, Elenitoba-Johnson KS, Lim MS.
Lab Invest (2007) 87(11): 1113-24
Screening of serum samples from Wegener's granulomatosis patients using antibody microarrays
Eric W. Olle, Michael P. Deogracias, James E. Messamore, Shannon D. McClintock, Adam G. Barron, Timothy D. Anderson, Kent J. Johnson
PROTEOMICS - CLINICAL APPLICATIONS (2007) 1(10): 1212-1220
Proteomic Investigation of the Ventral Rat Hippocampus Links DRP-2 to Escitalopram Treatment Resistance and SNAP to Stress Resilience in the Chronic Mild Stress Model of Depression
Bisgaard CF, Jayatissa MN, Enghild JJ, Sanchez C, Artemychyn R, Wiborg O.
J Mol Neurosci (2007) 32(2): 132-44
Application of two-dimensional electrophoresis and matrix-assisted laser desorption/ionization time-of-flight mass spectrometry for proteomic analysis of the sexually transmitted parasite Trichomonas vaginalis
Jose Batista De Jesus, Patricia Cuervo, Magno Junqueira, Constança Britto, Fernando Costa Silva-Filho, Leonardo Sabóia-Vahia, Luis Javier González, Gilberto Barbosa Domont
Journal of Mass Spectrometry (2007) 42(11): 1463-1473
Identification of proteins involved in aggregation of human dermal papilla cells by proteomics
Rushan X, Fei H, Zhirong M, Yu-Zhang W.
J Dermatol Sci Early Edition: published 15-Sep-2007
Development of reverse phase protein microarrays for clinical applications and patient-tailored therapy
Speer R, Wulfkuhle J, Espina V, Aurajo R, Edmiston KH, Liotta LA, Petricoin EF 3rd.
Cancer Genomics Proteomics (2007) 4(3): 157-64
HUPO BPP pilot study: A proteomics analysis of the mouse brain of different developmental stages
Jing Wang, Yong Gu, Lihong Wang, Xingyi Hang, Yan Gao, Hangyan Wang, Chenggang Zhang
PROTEOMICS (2007) 7(21): 4008-4015
Cerebrospinal fluid proteome profile in multiple sclerosis
Lehmensiek V, Sussmuth S, Tauscher G, Brettschneider J, Felk S, Gillardon F, Tumani H.
Mult Scler (2007) 13(7): 840-9
Differential expression of mimecan and thioredoxin domain containing protein 5 in colorectal adenoma and cancer: a proteomic study
Wang Y, Ma Y, Lu B, Xu E, Huang Q, Lai M.
Exp Biol Med (Maywood) (2007) 232(9): 1152-9
Proteomic analysis of protein expression changes in a model of gliomagenesis
Joshua K. McBee, Li-Rong Yu, Yoshito Kinoshita, Takuma Uo, Richard P. Beyer, Timothy D. Veenstra, Richard S. Morrison
PROTEOMICS - CLINICAL APPLICATIONS (2007) 1(11): 1485-1498
Differential protein expression in male and female human lumbar cerebrospinal fluid using iTRAQ reagents after abundant protein depletion
Yuko Ogata, M. Cristine Charlesworth, LeeAnn Higgins, B. Mark Keegan, Steven Vernino, David C. Muddiman
PROTEOMICS (2007) 7(20): 3726-3734
Preliminary explorations of the role of mitochondrial proteins in refractory epilepsy: Some Findings From Comparative Proteomics
Jiang W, Du B, Chi Z, Ma L, Wang S, Zhang X, Wu W, Wang X, Xu G, Guo C.
J Neurosci Res (2007) 85(14): 3160-70
Identification of a urinary proteomic signature for lupus nephritis in children
Suzuki M, Ross GF, Wiers K, Nelson S, Bennett M, Passo MH, Devarajan P, Brunner HI.
Pediatr Nephrol Early Edition: published 28-Sep-2007
Proteomic strategies in multiple sclerosis and its animal models
Stella Elkabes, Hong Li
PROTEOMICS - CLINICAL APPLICATIONS (2007) 1(11): 1393-1405
Identification of Candidate Angiogenic Inhibitors Processed by MMP-2 in Cell Based Proteomic Screens: Disruption of VEGF/HARP (Pleiotrophin) and VEGF / CTGF Angiogenic Inhibitory Complexes by MMP-2 Proteolysis
Dean RA, Butler GS, Hamma-Kourbali Y, Delbe J, Brigstock DR, Courty J, Overall CM.
Mol Cell Biol Early Edition: published 1-Oct-2007
Urinary proteome and potential biomarkers associated with serial pathogenesis steps of focal segmental glomerulosclerosis
Shui HA, Huang TH, Ka SM, Chen PH, Lin YF, Chen A.
Nephrol Dial Transplant Early Edition: published 19-Sep-2007
Reliability of antibodies to Candida methionine synthase for diagnosis, prognosis and risk stratification in systemic candidiasis: A generic strategy for the prototype development phase of proteomic markers
Aida Pitarch, César Nombela, Concha Gil
PROTEOMICS - CLINICAL APPLICATIONS (2007) 1(10): 1221-1242
Proteomic analysis of two head and neck cancer cell lines presenting different radiation sensitivity
Lee YS, Chang HW, Jeong JE, Lee SW, Kim SY.
Acta Otolaryngol Early Edition: published 4-Oct-2007
Altered protein profile of lymphocytes in an antigen-specific model of colitis: A comparative proteomic study
Liu BG, Cao YB, Cao YY, Zhang JD, An MM, Wang Y, Gao PH, Yan L, Xu Y, Jiang YY.
Inflamm Res (2007) 56(9): 377-84
An organelle proteomic method to study neurotransmission-related proteins, applied to a neurodevelopmental model of schizophrenia
Freya G. G. Vercauteren, Gonzalo Flores, Weiya Ma, Jean-Guy Chabot, Lieve Geenen, Stefan Clerens, Ali Fazel, John J. M. Bergeron, Lalit K. Srivastava, Lutgarde Arckens, Rémi Quirion
PROTEOMICS (2007) 7(19): 3569-3579
Preconditioning Results in S-Nitrosylation of Proteins Involved in Regulation of Mitochondrial Energetics and Calcium Transport
Sun J, Morgan M, Shen RF, Steenbergen C, Murphy E.
Circ Res Early Edition: published 4-Oct-2007
Mining the liver proteome for drug targets for sepsis
Bowler R, Reisdorph N.
Crit Care Med (2007) 35(10): 2443-4
Proteomic profiling of proteins associated with methamphetamine-induced neurotoxicity in different regions of rat brain
Li X, Wang H, Qiu P, Luo H.
Neurochem Int Early Edition: published 27-Jun-2007
Comparative proteome analysis of human epithelial ovarian cancer
Gagne JP, Ethier C, Gagne P, Mercier G, Bonicalzi ME, Mes-Masson AM, Droit A, Winstall E, Isabelle M, Poirier GG.
Proteome Science (2007) 5(1): 16
Differential protein expression in tree shrew sclera during development of lens-induced myopia and recovery
Frost MR, Norton TT.
Mol Vis (2007) 13: 1580-8.
Characterization of discriminant human brain antigenic targets in neuropsychiatric systemic lupus erythematosus using an immunoproteomic approach
Lefranc D, Launay D, Dubucquoi S, Seze JD, Dussart P, Vermersch M, Hachulla E, Hatron PY, Vermersch P, Mouthon L, Prin L.
Arthritis Rheum (2007) 56(10): 3420-3432
Proteomic analysis of protein expression in the eutopic endometrium of women with endometriosis
Sara ten Have, Ian Fraser, Robert Markham, Alan Lam, Izuru Matsumoto
PROTEOMICS - CLINICAL APPLICATIONS (2007) 1(10): 1243-1251
Deep proteome profiling of sera from never-smoked lung cancer patients
Au JS, Cho WC, Yip TT, Yip C, Zhu H, Leung WW, Tsui PY, Kwok DL, Kwan SS, Cheng WW, Tzang LC, Yang M, Law SC.
Biomed Pharmacother (2007) 61(9): 570-7
Cerebrospinal Fluid Proteomes: From Neural Development to Neurodegenerative Diseases
Parada, Carolina; Parvas, Maryam; Bueno, David
Current Proteomics (2007) 4(2): 89-106
8-Plex quantitation of changes in cerebrospinal fluid protein expression in subjects undergoing intravenous immunoglobulin treatment for Alzheimer's disease
Leila Choe, Mark D'Ascenzo, Norman R. Relkin, Darryl Pappin, Philip Ross, Brian Williamson, Steven Guertin, Patrick Pribil, Kelvin H. Lee
PROTEOMICS (2007) 7(20): 3651-3660
A cell proteomic approach for the detection of secretable biomarkers of invasiveness in oral squamous cell carcinoma
Mlynarek AM, Balys RL, Su J, Hier MP, Black MJ, Alaoui-Jamali MA.
Arch Otolaryngol Head Neck Surg (2007) 133(9): 910-8
Platelet-associated PF-4 as a biomarker of early tumor growth
Cervi D, Yip TT, Bhattacharya N, Podust VN, Peterson J, Abou-Slaybi A, Naumov GN, Bender E, Almog N, Italiano JE Jr, Folkman J, Klement GL.
Blood Early Edition: published 3-Oct-2007
Biomarkers for Alzheimer's disease
Ward M.
Expert Rev Mol Diagn (2007) 7(5): 635-46
Identification and validation of novel CSF biomarkers for early stages of Alzheimer's disease
Yan Hu, Ava Hosseini, John S. K. Kauwe, Julia Gross, Nigel J. Cairns, Alison M. Goate, Anne M. Fagan, R. Reid Townsend, David M. Holtzman
PROTEOMICS - CLINICAL APPLICATIONS (2007) 1(11): 1373-1384
A density-based proteomics sample fractionation technology: folate deficiency induced oxidative stress response in liver and brain
Lan W, Guhaniyogi J, Horn MJ, Xia JQ, Graham B.
J Biomol Tech (2007) 18(4): 213-25
Differential valine metabolism in adipose tissue of low and high fat-oxidizing obese subjects
Mandy Claessens, Wim H. M. Saris, Freek G. Bouwman, Chris T. A. Evelo, Gabby B. J. Hul, Ellen E. Blaak, Edwin C. M. Mariman
PROTEOMICS - CLINICAL APPLICATIONS (2007) 1(10): 1306-1315
A comparative proteinomic analysis of nipple aspiration fluid from healthy women and women with breast cancer
Noble JL, Dua RS, Coulton GR, Isacke CM, Gui GP.
Eur J Cancer (2007) 43(16): 2315-20
Proteome Analysis of Hepatocellular Carcinoma by Two-dimensional Difference Gel Electrophoresis: Novel Protein Markers in Hepatocellular Carcinoma Tissues
Wei Sun, Baocai Xing, Yi Sun, Xiaojuan Du, Min Lu, Chunyi Hao, Zhuang Lu, Wei Mi, Songfeng Wu, Handong Wei, Xue Gao, Yunping Zhu, Ying Jiang, Xiaohong Qian, and Fuchu He
Mol Cell Proteomics (2007) 6(10): 1798-1808
Antibody response against saliva antigens of Anopheles gambiae and Aedes aegypti in travellers in tropical Africa
Orlandi-Pradines E, Almeras L, Denis de Senneville L, Barbe S, Remoue F, Villard C, Cornelie S, Penhoat K, Pascual A, Bourgouin C, Fontenille D, Bonnet J, Corre-Catelin N, Reiter P, Pages F, Laffite D, Boulanger D, Simondon F, Pradines B, Fusai T, Rogier C.
Microbes Infect Early Edition: published 7-Aug-2007
Oldest known case of metastasizing prostate carcinoma diagnosed in the skeleton of a 2,700-year-old Scythian king from Arzhan (Siberia, Russia)
Schultz M, Parzinger H, Posdnjakov DV, Chikisheva TA, Schmidt-Schultz TH.
Int J Cancer (2007) 121(12): 2591-5
Analysis of membrane microdomain-associated proteins in the insular cortex of post-mortem human brain
Áine T. Behan, Martina Foy, Kieran Wynne, Michael Clarke, Matthew Sullivan, David R. Cotter, Patricia B. Maguire
PROTEOMICS - CLINICAL APPLICATIONS (2007) 1(10): 1324-1331
Proteomic analysis of peripheral T lymphocytes, suitable circulating biosensors of strictly related diseases
Borro M, Gentile G, Stigliano A, Misiti S, Toscano V, Simmaco M.
Clin Exp Immunol Early Edition: published 27-Sep-2007
Dynamic Proteome Changes of Shigella flexneri 2a During Transition from Exponential Growth to Stationary Phase
Zhu L, Liu XK, Zhao G, Zhi YD, Bu X, Ying TY, Feng EL, Wang J, Zhang XM, Huang PT, Wang HL.
Genomics Proteomics Bioinformatics (2007) 5(2): 111-20
Proteomic analysis of water insoluble proteins from normal and cataractous human lenses
Harrington V, Srivastava OP, Kirk M.
Mol Vis (2007) 13: 1680-94.
Proteome and immunome of pathogenic Leptospira spp. revealed by 2DE and 2DE-immunoblotting with immune serum
Sakolvaree Y, Maneewatch S, Jiemsup S, Klaysing B, Tongtawe P, Srimanote P, Saengjaruk P, Banyen S, Tapchaisri P, Chonsa-nguan M, Chaicumpa W.
Asian Pac J Allergy Immunol (2007) 25(1): 53-73
Proteomic analysis of supernatant from pooled buffy-coat platelet concentrates throughout 7-day storage
Glenister KM, Payne KA, Sparrow RL.
Transfusion Early Edition: published 25-Sep-2007
Recent advances in the characterisation of the platelet membrane system by proteomics
Foy M, Maguire PB.
Curr Pharm Des (2007) 13(26): 2647-55
Proteomic analysis of porcine oocytes during in vitro maturation reveals essential role for the ubiquitin C-terminal hydrolase-L1
Susor A, Ellederova Z, Jelinkova L, Halada P, Kavan D, Kubelka M, Kovarova H.
Reproduction (2007) 134(4): 559-68
Composite sequence proteomic analysis of protein biomarkers of Campylobacter coli, C. lari and C. concisus for bacterial identification
Fagerquist CK, Yee E, Miller WG.
Analyst (2007) 132(10): 1010-23
Proteomic Characterization of Enterohemorrhagic Escherichia coli O157:H7 in the Oxidation-Induced Viable but Non-Culturable State
Asakura H, Panutdaporn N, Kawamoto K, Igimi S, Yamamoto S, Makino S.
Microbiol Immunol (2007) 51(9): 875-81
Non-disruptive release of Pseudomonas putida proteins by in situ electric breakdown of intact cells
Pfluger K, di Bartolo I, Velazquez F, de Lorenzo V.
J Microbiol Methods Early Edition: published 23-Aug-2007
Functioning of the mercury resistance operon at extremely high Hg(II) loads in a chemostat: A proteome analysis
Leonhauser J, Wang W, Deckwer WD, Wagner-Dobler I.
J Biotechnol Early Edition: published 14-Aug-2007
2DBase: 2D-PAGE database of Escherichia coli
Vijayendran C, Burgemeister S, Friehs K, Niehaus K, Flaschel E.
Biochem Biophys Res Commun (2007) 363(3): 822-7
Analysis of gene expression in two human-derived cell lines exposed in vitro to a 1.9 GHz pulse-modulated radiofrequency field
Vinita Chauhan, Sami S. Qutob, Stephanie Lui, Anu Mariampillai, Pascale V. Bellier, Carole L. Yauk, George R. Douglas, Andrew Williams, James P. McNamee
PROTEOMICS (2007) 7(21): 3896-3905
Proteomic profiling of proteins associated with methamphetamine-induced neurotoxicity in different regions of rat brain
Li X, Wang H, Qiu P, Luo H.
Neurochem Int Early Edition: published 27-Jun-2007
Time-course analysis of mouse serum proteome changes following exposure of the skin to ionizing radiation
Olivier Guipaud, Valérie Holler, Valérie Buard, Georges Tarlet, Nicolas Royer, Joëlle Vinh, Marc Benderitter
PROTEOMICS (2007) 7(21): 3992-4002
Study of protein targets for covalent modification by the antitumoral and anti-inflammatory prostaglandin PGA1: focus on vimentin
Severine Gharbi, Beatriz Garzón, Javier Gayarre, John Timms, Dolores Pérez-Sala
Journal of Mass Spectrometry (2007) 42(11): 1474-1484
Use of proteomics for the discovery of early markers of drug toxicity
Collins BC, Clarke A, Kitteringham NR, Gallagher WM, Pennington SR.
Expert Opin Drug Metab Toxicol (2007) 3(5): 689-704
Proteomic analysis of the response of the human neutrophil-like cell line NB-4 after exposure to anthrax lethal toxin
Jun X. Wheeler, Gail Whiting, Sjoerd Rijpkema
PROTEOMICS - CLINICAL APPLICATIONS (2007) 1(10): 1266-1279
Chemical proteomic probes for profiling cytochrome p450 activities and drug interactions in vivo
Wright AT, Cravatt BF.
Chem Biol (2007) 14(9): 1043-51
Reverse-phase protein microarrays: application to biomarker discovery and translational medicine
VanMeter A, Signore M, Pierobon M, Espina V, Liotta LA, Petricoin EF 3rd.
Expert Rev Mol Diagn (2007) 7(5): 625-33
High-throughput proteomics using antibody microarrays: an update
Borrebaeck CA, Wingren C.
Expert Rev Mol Diagn (2007) 7(5): 673-86
Affinity-based chemical proteomic probe for dehydrogenases: Fluorescence and visible binding assays in gels
Ge X, Sem DS.
Anal Biochem (2007) 370(2): 171-9
Development of reverse phase protein microarrays for clinical applications and patient-tailored therapy
Speer R, Wulfkuhle J, Espina V, Aurajo R, Edmiston KH, Liotta LA, Petricoin EF 3rd.
Cancer Genomics Proteomics (2007) 4(3): 157-64
Activity-based protein profiling for the functional annotation of enzymes
Barglow KT, Cravatt BF.
Nat Methods (2007) 4(10): 822-7
Identification of protein phosphorylation sites within Ser/Thr-rich cluster domains using site-directed mutagenesis and hybrid linear quadrupole ion trap Fourier transform ion cyclotron resonance mass spectrometry
Julie B. King, Julia Gross, Christine M. Lovly, Helen Piwnica-Worms, R. Reid Townsend
Rapid Communications in Mass Spectrometry (2007) 21(21): 3443-3451
Quantitative analysis of myofilament protein phosphorylation in small cardiac biopsies
Ruud Zaremba, Daphne Merkus, Nazha Hamdani, Jos M. J. Lamers, Walter J. Paulus, Cris dos Remedios, Dirk J. Duncker, Ger J. M. Stienen, Jolanda van der Velden
PROTEOMICS - CLINICAL APPLICATIONS (2007) 1(10): 1285-1290
Structure elucidation of glycoproteins by direct nanoESI MS and MS/MS analysis of proteolytic glycopeptides
Stefanie Henning, Jasna Peter-Katalini?, Gottfried Pohlentz
Journal of Mass Spectrometry (2007) 42(11): 1415-1421
FragAnchor: A Large-Scale Predictor of Glycosylphosphatidylinositol Anchors in Eukaryote Protein Sequences by Qualitative Scoring
Poisson G, Chauve C, Chen X, Bergeron A.
Genomics Proteomics Bioinformatics (2007) 5(2): 121-30
Exploring the Sialiome Using Titanium Dioxide Chromatography and Mass Spectrometry
Martin R. Larsen, Soren S. Jensen, Lene A. Jakobsen, and Niels H. H. Heegaard
Mol Cell Proteomics (2007) 6(10): 1778-1787
Evaluation of the impact of some experimental procedures on different phosphopeptide enrichment techniques
Sřren S. Jensen, Martin R. Larsen
Rapid Communications in Mass Spectrometry (2007) 21(22): 3635-3645
Identification of Cytochrome P450 3A4 Modification Site with Reactive Metabolite Using Linear Ion Trap-Fourier Transform Mass Spectrometry
Yukinaga H, Takami T, Shioyama SH, Tozuka Z, Masumoto H, Okazaki O, Sudo KI.
Chem Res Toxicol (2007) 20(10): 1373-8
Analysis of Glycoproteins in Human Serum by Means of Glycospecific Magnetic Bead Separation and LC-MALDI-TOF/TOF Analysis with Automated Glycopeptide Detection
Sparbier K, Asperger A, Resemann A, Kessler I, Koch S, Wenzel T, Stein G, Vorwerg L, Suckau D, Kostrzewa M.
J Biomol Tech (2007) 18(4): 252-8
High Sensitivity Detection of Plasma Proteins by Multiple Reaction Monitoring of N-Glycosites
Jianru Stahl-Zeng, Vinzenz Lange, Reto Ossola, Katrin Eckhardt, Wilhelm Krek, Ruedi Aebersold, and Bruno Domon
Mol Cell Proteomics (2007) 6(10): 1809-1817
Dynamics of protein phosphorylation on Ser/Thr/Tyr in Bacillus subtilis
Christine Eymann, Dörte Becher, Jörg Bernhardt, Katrin Gronau, Anja Klutzny, Michael Hecker
PROTEOMICS (2007) 7(19): 3509-3526
Quantitative Comparison of IMAC and TiO(2) Surfaces Used in the Study of Regulated, Dynamic Protein Phosphorylation
Liang X, Fonnum G, Hajivandi M, Stene T, Kjus NH, Ragnhildstveit E, Amshey JW, Predki P, Pope RM.
J Am Soc Mass Spectrom (2007) 18(11): 1932-1944
Novel subsets of the Arabidopsis plasmalemma phosphoproteome identify phosphorylation sites in secondary active transporters
Hem S, Rofidal V, Sommerer N, Rossignol M.
Biochem Biophys Res Commun (2007) 363(2): 375-80
Glycosylation status of the membrane protein CD9P-1
Magali André, Willy Morelle, Sébastien Planchon, Pierre-Emmanuel Milhiet, Eric Rubinstein, Rosella Mollicone, Julia Chamot-Rooke, François Le Naour
PROTEOMICS (2007) 7(21): 3880-3895
Targeted mass spectrometric strategy for global mapping of ubiquitination on proteins
Mollah S, Wertz IE, Phung Q, Arnott D, Dixit VM, Lill JR.
Rapid Commun Mass Spectrom (2007) 21(20): 3357-3364
Mapping protein post-translational modifications with mass spectrometry
Witze ES, Old WM, Resing KA, Ahn NG.
Nat Methods (2007) 4(10): 798-806
Glycomic mapping of pseudomucinous human ovarian cyst glycoproteins: Identification of Lewis and sialyl Lewis glycotopes
Albert M. Wu, Kay-Hooi Khoo, Shin-Yi Yu, Zhangung Yang, Reiji Kannagi, Winifred M. Watkins
PROTEOMICS (2007) 7(20): 3699-3717
Exploration of the omics evidence landscape: adding qualitative labels to predicted protein-protein interactions
van Noort V, Snel B, Huynen MA.
Genome Biol (2007) 8(9): R197
Computational and experimental approaches assess the interactions between bovine beta-lactoglobulin and synthetic compounds of pharmacological interest
Eberini I, Rocco AG, Mantegazza M, Gianazza E, Baroni A, Vilardo MC, Donghi D, Galliano M, Beringhelli T.
J Mol Graph Model Early Edition: published 30-Aug-2007
InSite: a computational method for identifying protein-protein interaction binding sites on a proteome-wide scale
Wang H, Segal E, Ben-Hur A, Li Q, Vidal M, Koller D.
Genome Biol (2007) 8(9): R192
Interactome and interface protocol (2IP): A novel strategy for high sensitivity topology mapping of protein complexes
Rasanjala Weerasekera, Yi-Min She, Kelly A. Markham, Yu Bai, Natacha Opalka, Stephen Orlicky, Frank Sicheri, Thomas Kislinger, Gerold Schmitt-Ulms
PROTEOMICS (2007) 7(21): 3835-3852
Mass spectrometry-based functional proteomics: from molecular machines to protein networks
Kocher T, Superti-Furga G.
Nat Methods (2007) 4(10): 807-15
One- plus Two-hybrid System, a Novel Yeast Genetic Selection for Specific Missense Mutations Disrupting Protein/Protein Interactions
Ji Young Kim, Ok Gu Park, Jae Woon Lee, and Young Chul Lee
Mol Cell Proteomics (2007) 6(10): 1727-1740
Studying the protein-protein interactions in the postsynaptic density by means of immunoabsorption and chemical crosslinking
Chia-Wei Chang, Sheng-Chih Peng, Wen-Yao Cheng, Szu-Heng Liu, Huei-Hsuan Cheng, San-Yuan Huang, Yen-Chung Chang
PROTEOMICS - CLINICAL APPLICATIONS (2007) 1(11): 1499-1512
Quantitative analysis of amyloid-{beta} peptides in cerebrospinal fluid using immunoprecipitation and MALDI-Tof mass spectrometry
Valentina Gelfanova, Richard E. Higgs, Robert A. Dean, David M. Holtzman, Martin R. Farlow, Eric R. Siemers, Amechand Boodhoo, Yue-Wei Qian, Xiaohua He, Zhaoyan Jin, Deborah L. Fisher, Karen L. Cox, and John E. Hale
Brief Funct Genomic Proteomic (2007) 6(2): 149-158
Quantitative proteomics using uniform 15N-labeling, MASCOT, and the trans-proteomic pipeline
Magnus Palmblad, Laurence V. Bindschedler, Rainer Cramer
PROTEOMICS (2007) 7(19): 3462-3469
A novel pyrimidine-based stable-isotope labeling reagent and its application to quantitative analysis using matrix-assisted laser desorption/ionization mass spectrometry
Jing Zhang, Li Zhang, Ying Zhou, Yin-Long Guo
Journal of Mass Spectrometry (2007) 42(11): 1514-1521
Non-Gel-Based Dual (18)O Labeling Quantitative Proteomics Strategy
Liu H, Zhang Y, Meng L, Qin P, Wei J, Jia W, Li X, Cai Y, Qian X.
Anal Chem (2007) 79(20): 7700-7707
Mechanistic Insights Into the Global Response to Phenol in the Phenol-biodegrading Strain Pseudomonas sp. M1 Revealed by Quantitative Proteomics
Santos PM, Roma V, Benndorf D, von Bergen M, Harms H, Sa-Correia I.
OMICS (2007) 11(3): 233-51
High-sensitivity analysis of specific peptides in complex samples by selected MS/MS ion monitoring and linear ion trap mass spectrometry: Application to biological studies
Inmaculada Jorge, Elisabet Miró Casas, Margarita Villar, Inmaculada Ortega-Pérez, Daniel López-Ferrer, Antonio Martínez-Ruiz, Mónica Carrera, Anabel Marina, Pablo Martínez, Horacio Serrano, Benito Cańas, Felipe Were, José Manuel Gallardo, Santiago Lamas, Juan Miguel Redondo, David García-Dorado, Jesús Vázquez
Journal of Mass Spectrometry (2007) 42(11): 1391-1403
Proteome-based diagnostics and prognosis of bladder transitional cell carcinoma
Wu TF, Ku WL, Tsay YG
Expert Rev Proteomics (2007) 4(5): 639-47
Proteomics of proteasome complexes and ubiquitinated proteins
Wang X, Guerrero C, Kaiser P, Huang L
Expert Rev Proteomics (2007) 4(5): 649-65
ImmunoCell-Array: a novel technology for pathway discovery and cell profiling
Giorgetti L, Zanardi A, Venturini S, Carbone R
Expert Rev Proteomics (2007) 4(5): 609-16
Helicobacter pylori: immunoproteomics related to different pathologies
Bernardini G, Braconi D, Lusini P, Santucci A
Expert Rev Proteomics (2007) 4(5): 679-89
The significance of organellar proteomics for the nervous system
Linda C. Miller, Wayne S. Sossin
PROTEOMICS - CLINICAL APPLICATIONS (2007) 1(11): 1436-1445
Methods for mapping of interaction networks involving membrane proteins
Hooker BS, Bigelow DJ, Lin CT.
Biochem Biophys Res Commun (2007) 363(3): 457-61
SEProt-EuPA joint meeting ?proteomics and pathology: Linking both sides of the Atlantic Ocean?
Juan J Calvete
Journal of Mass Spectrometry (2007) 42(11): 1404
Transfected cell microarrays: an efficient tool for high-throughput functional analysis
Starkuviene V, Pepperkok R, Erfle H
Expert Rev Proteomics (2007) 4(4): 479-89
Proteomics of brain synapses and molecular dissection of synaptic subdomains
Ka Wan Li, August B. Smit
PROTEOMICS - CLINICAL APPLICATIONS (2007) 1(11): 1476-1484
Functional proteomics in histone research and epigenetics
Trelle MB, Jensen ON
Expert Rev Proteomics (2007) 4(4): 491-503
New access to Alzheimer's and other neurodegenerative diseases
Hamacher M, Meyer HE, Marcus K
Expert Rev Proteomics (2007) 4(5): 591-4
Recent advances in protein profiling of tissues and tissue fluids
Yang S, Huang CM
Expert Rev Proteomics (2007) 4(4): 515-29
The proteomic approach in Parkinson's disease
Mauro Fasano, Bruno Bergamasco, Leonardo Lopiano
PROTEOMICS - CLINICAL APPLICATIONS (2007) 1(11): 1428-1435
Emerging technologies for the molecular study of infertility, and potential clinical applications
Varghese AC, Goldberg E, Bhattacharyya AK, Agarwal A.
Reprod Biomed Online (2007) 15(4): 451-6
Proteomic approach to breast cancer
Laronga C, Drake RR.
Cancer Control (2007) 14(4): 360-8
Histone proteomics and the epigenetic regulation of nucleosome mobility
Cosgrove MS
Expert Rev Proteomics (2007) 4(4): 465-78
High-throughput antibody microarrays for quantitative proteomic analysis
Lv LL, Liu BC
Expert Rev Proteomics (2007) 4(4): 505-13
Elemental mass spectrometry for quantitative proteomics
Sanz-Medel A, Montes-Bayon M, Del Rosario Fernandez de la Campa M, Encinar JR, Bettmer J.
Anal Bioanal Chem Early Edition: published 2-Oct-2007
Soluble polymer-based isotopic labeling (SoPIL): a new strategy to discover protein biomarkers?
Tao WA
Expert Rev Proteomics (2007) 4(5): 603-7
Advancing signaling networks through proteomics
Tekirian TL, Thomas SN, Yang A
Expert Rev Proteomics (2007) 4(4): 573-83
Alternative profiling platform based on MELDI and its applicability in clinical proteomics
Najam-ul-Haq M, Rainer M, Trojer L, Feuerstein I, Vallant RM, Huck CW, Bakry R, Bonn GK
Expert Rev Proteomics (2007) 4(4): 447-52
Human saliva proteome analysis and disease biomarker discovery
Hu S, Loo JA, Wong DT
Expert Rev Proteomics (2007) 4(4): 531-8
Neuroproteomics and its applications in research on nicotine and other drugs of abuse
Ming D. Li, Ju Wang
PROTEOMICS - CLINICAL APPLICATIONS (2007) 1(11): 1406-1427
Clinical proteomics in neurodegenerative diseases
Jian-Ying Zhou, John Hanfelt, Junmin Peng
PROTEOMICS - CLINICAL APPLICATIONS (2007) 1(11): 1342-1350
Fourier transform ion cyclotron resonance: state of the art
Marshall AG, Hendrickson CL, Emmett MR, Rodgers RP, Blakney GT, Nilsson CL.
Eur J Mass Spectrom (Chichester, Eng) (2007) 13(1): 57-9
Carrier ampholytes for IEF, on their fortieth anniversary (1967-2007), brought to trial in court: The verdict
Pier Giorgio Righetti, Carolina Simó, Roberto Sebastiano, Attilio Citterio
ELECTROPHORESIS (2007) 28(21): 3799-3810
Advances in Neuroproteomics
Gert Lubec
PROTEOMICS - CLINICAL APPLICATIONS (2007) 1(11): 1339-1341
High-throughput proteomics using antibody microarrays: an update
Borrebaeck CA, Wingren C.
Expert Rev Mol Diagn (2007) 7(5): 673-86
Laser capture sampling and analytical issues in proteomics
Gutstein HB, Morris JS
Expert Rev Proteomics (2007) 4(5): 627-37
Methodology development for predicting subcellular localization and other attributes of proteins
Shen HB, Yang J, Chou KC
Expert Rev Proteomics (2007) 4(4): 453-63
Proteomics of Alzheimer's disease: Unveiling protein dysregulation in complex neuronal systems
Keith Vosseller
PROTEOMICS - CLINICAL APPLICATIONS (2007) 1(11): 1351-1361
Primer: genomic and proteomic tools for the molecular dissection of disease
Walker EJ, Siminovitch KA.
Nat Clin Pract Rheumatol (2007) 3(10): 580-589
Proteins at membrane surfaces-a review of approaches
Macher BA, Yen TY.
Mol Biosyst (2007) 3(10): 705-13
CNS proteomes in alcohol and drug abuse and dependence
Matsumoto I, Alexander-Kaufman K, Iwazaki T, Kashem MA, Matsuda-Matsumoto H
Expert Rev Proteomics (2007) 4(4): 539-52
Postgenomics of Neisseria meningitidis for vaccines development
Bernardini G, Braconi D, Martelli P, Santucci A
Expert Rev Proteomics (2007) 4(5): 667-77
How Will Haematologists Use Proteomics?
Unwin RD, Whetton AD.
Blood Rev (2007) 21(6): 315-26
Peptide fragmentation and phospho-site detection
Savitski MM, Falth M
Expert Rev Proteomics (2007) 4(4): 445-6
Proteomics technologies and challenges
Cho WC.
Genomics Proteomics Bioinformatics (2007) 5(2): 77-85
Innovative proteomic approaches for cancer biomarker discovery
Faca V, Krasnoselsky A, Hanash S.
Biotechniques (2007) 43(3): 285
Proteomics of traumatic brain injury and regeneration
Günther K. H. Zupanc
PROTEOMICS - CLINICAL APPLICATIONS (2007) 1(11): 1362-1372
Neuroproteomics in stem cell differentiation
Susanne Beyer, Eilhard Mix, Raimund Hoffrogge, Katja Lünser, Uwe Völker, Arndt Rolfs
PROTEOMICS - CLINICAL APPLICATIONS (2007) 1(11): 1513-1523
Analysis and validation of proteomic data generated by tandem mass spectrometry
Nesvizhskii AI, Vitek O, Aebersold R.
Nat Methods (2007) 4(10): 787-97
Proteomic approaches for cancer biomarker discovery in plasma
Pitteri SJ, Hanash SM
Expert Rev Proteomics (2007) 4(5): 589-90
Nanotechnology in proteomics
Marko NF, Weil RJ, Toms SA
Expert Rev Proteomics (2007) 4(5): 617-26
A quantitative and qualitative method for direct 2-DE analysis of murine cartilage
Fabio Pecora, Antonella Forlino, Benedetta Gualeni, Anna Lupi, Sofia Giorgetti, Loredana Marchese, Monica Stoppini, Ruggero Tenni, Giuseppe Cetta, Antonio Rossi
PROTEOMICS (2007) 7(21): 4003-4007
On-plate digestion of proteins using novel trypsin-immobilized magnetic nanospheres for MALDI-TOF-MS analysis
Yan Li, Bo Yan, Chunhui Deng, Jia Tang, Junyan Liu, Xiangmin Zhang
PROTEOMICS (2007) 7(20): 3661-3671
Improved solubilization of surface proteins from Listeria monocytogenes for 2-DE
Sana Mujahid, Tibor Pechan, Chinling Wang
ELECTROPHORESIS (2007) 28(21): 3998-4007
Fiber-packed channel bioreactor for microfluidic protein digestion
Huizhi Fan, Gang Chen
PROTEOMICS (2007) 7(19): 3445-3449
Novel chromatography techniques for high-throughput analysis of proteomes
Yuan H, Zhang L, Liang Z, Zhang Y.
Anal Bioanal Chem Early Edition: published 28-Sep-2007
Specific isolation of N-terminal fragments from proteins and their high-fidelity de novo sequencing
Yamaguchi M, Obama T, Kuyama H, Nakayama D, Ando E, Okamura TA, Ueyama N, Nakazawa T, Norioka S, Nishimura O, Tsunasawa S.
Rapid Commun Mass Spectrom (2007) 21(20): 3329-3336
Effect of detergent on electromigration of proteins: CE of very low density lipoprotein receptor modules and viral proteins
Leopold Kremser, Gerhard Bilek, Ernst Kenndler
ELECTROPHORESIS (2007) 28(20): 3684-3690
A simple method to remove contaminating salt from IPG strips prior to IEF
Carrie J. Heppelmann, Linda M. Benson, H. Robert Bergen III
ELECTROPHORESIS (2007) 28(21): 3988-3991
Suction blister fluid as potential body fluid for biomarker proteins
Jeroen Kool, Léon Reubsaet, Feikje Wesseldijk, Raquel T. Maravilha, Martijn W. Pinkse, Clive S. D'Santos, Jacobus J. van Hilten, Freek J. Zijlstra, Albert J. R. Heck
PROTEOMICS (2007) 7(20): 3638-3650
Assessing Enzyme Activities Using Stable Isotope Labeling and Mass Spectrometry
Patrick A. Everley, Carlos A. Gartner, Wilhelm Haas, Alan Saghatelian,Joshua E. Elias, Benjamin F. Cravatt, Bruce R. Zetter, and Steven P. Gygi
Mol Cell Proteomics (2007) 6(10): 1771-1777
Quantifying raft proteins in neonatal mouse brain by 'tube-gel' protein digestion label-free shotgun proteomics
Yu H, Wakim B, Li M, Halligan B, Tint GS, Patel SB.
Proteome Science (2007) 5(1): 17
Non-Gel-Based Dual (18)O Labeling Quantitative Proteomics Strategy
Liu H, Zhang Y, Meng L, Qin P, Wei J, Jia W, Li X, Cai Y, Qian X.
Anal Chem (2007) 79(20): 7700-7707
A protein extraction method compatible with proteomic analysis for the euhalophyte Salicornia europaea
Xuchu Wang, Xiaofang Li, Xin Deng, Heping Han, Wuliang Shi, Yinxin Li
ELECTROPHORESIS (2007) 28(21): 3976-3987
Endogeneous peptide profiling of cerebrospinal fluid by MALDI-TOF mass spectrometry: Optimization of magnetic bead-based peptide capture and analysis of preanalytical variables
Connie R. Jimenez, Marleen Koel-Simmelink, Thang V. Pham, Laura van der Voort, Charlotte E. Teunissen
PROTEOMICS - CLINICAL APPLICATIONS (2007) 1(11): 1385-1392
Urea-based two-dimensional electrophoresis of beta-amyloid peptides in human plasma: Evidence for novel A? species
Juan Manuel Maler, Hans-Wolfgang Klafki, Sabine Paul, Philipp Spitzer, Teja Wolfgang Groemer, Andreas Wolfram Henkel, Hermann Esselmann, Piotr Lewczuk, Johannes Kornhuber, Jens Wiltfang
PROTEOMICS (2007) 7(20): 3815-3820
Non-disruptive release of Pseudomonas putida proteins by in situ electric breakdown of intact cells
Pfluger K, di Bartolo I, Velazquez F, de Lorenzo V.
J Microbiol Methods Early Edition: published 23-Aug-2007
Rapid mass spectral identification of contryphans. Detection of characteristic peptide ions by fragmentation of intact disulfide-bonded peptides in crude venom
Suman S. Thakur, Padmanabhan Balaram
Rapid Communications in Mass Spectrometry (2007) 21(21): 3420-3426
Proteomic Study of Micro-Algae: Sample Preparation for Two-Dimensional Gel Electrophoresis and De Novo Peptide Sequencing Using MALDI-TOF MS
Lee, Fred W.a.n.g-F.a.t.; Lo, Samuel C.h.u.n-L.a.p.
Current Proteomics (2007) 4(2): 67-78
Top-Down Proteomics on a Chromatographic Time Scale Using Linear Ion Trap Fourier Transform Hybrid Mass Spectrometers
Parks BA, Jiang L, Thomas PM, Wenger CD, Roth MJ, Ii MT, Burke PV, Kwast KE, Kelleher NL.
Anal Chem (2007) 79(21): 7984-91
Proteomics Evaluation of Chemically Cleavable Activity-based Probes
Marko Fonovic, Steven H. L. Verhelst, Mark T. Sorum, and Matthew Bogyo
Mol Cell Proteomics (2007) 6(10): 1761-1770
Development of BIATECH-54 standard mixtures for assessment of protein identification and relative expression
Eugene Kolker, Jason M. Hogan, Roger Higdon, Natali Kolker, Elizabeth Landorf, Alexander F. Yakunin, Frank R. Collart, Gerald van Belle
PROTEOMICS (2007) 7(20): 3693-3698
Functional assays in high-resolution clear native gels to quantify mitochondrial complexes in human biopsies and cell lines
Ilka Wittig, Rosalba Carrozzo, Filippo M. Santorelli, Hermann Schägger
ELECTROPHORESIS (2007) 28(21): 3811-3820
Modification of aluminum chips for LDI mass spectrometry of proteins
Vadim Shmanai, Sergey Gontarev, Simone K. Frey, Florian J. Schweigert
Journal of Mass Spectrometry (2007) 42(11): 1504-1513
Quality Control of Serum Albumin Depletion for Proteomic Analysis
Seam N, Gonzales DA, Kern SJ, Hortin GL, Hoehn GT, Suffredini AF.
Clin Chem (2007) 53(11): 1915-20
Direct visualisation of peptide hormones in cultured pancreatic islet alpha- and beta-cells by intact-cell mass spectrometry
Christina M. Buchanan, Arpita S. Malik, Garth J. S. Cooper
Rapid Communications in Mass Spectrometry (2007) 21(21): 3452-3458
Towards stable diagnostic setups in clinical proteomics: Absolute quantitation of peptide biomarkers using MALDI-TOF-MS
Daniel Baechle, Katrin Sparbier, Hassan Dihazi, Sabine Blaschke, Gerhard-Anton Mueller, Markus Kostrzewa, Thomas Flad
PROTEOMICS - CLINICAL APPLICATIONS (2007) 1(10): 1280-1284
Multidimensional liquid phase protein separations in conjunction with stable isotope labelling for quantitative proteomics
Bobby F. Assiddiq, James C. Williamson, Ambrosius P. L. Snijders, Ken Cook, Mark J. Dickman
PROTEOMICS (2007) 7(21): 3826-3834
A Comparison of nLC-ESI-MS/MS and nLC-MALDI-MS/MS for GeLC-Based Protein Identification and iTRAQ-Based Shotgun Quantitative Proteomics
Yang Y, Zhang S, Howe K, Wilson DB, Moser F, Irwin D, Thannhauser TW.
J Biomol Tech (2007) 18(4): 226-37
Polyacrylamide lamination enables mass spectrometry compatible staining and in-gel digestion of proteins separated by agarose IEF
Jukka Hellman
PROTEOMICS (2007) 7(19): 3441-3444
Efficient enrichment and desalting of protein digests using magnetic mesocellular carbon foams in matrix-assisted laser desorption/ionization mass spectrometry
Young-Pil Kim, Kun Cho, Dohoon Lee, Yunxian Piao, Yeong Hee Ahn, Jong Shin Yoo, Taeghwan Hyun, Hak-Sung Kim
Rapid Communications in Mass Spectrometry (2007) 21(21): 3435-3442
Targeted mass spectrometric strategy for global mapping of ubiquitination on proteins
Mollah S, Wertz IE, Phung Q, Arnott D, Dixit VM, Lill JR.
Rapid Commun Mass Spectrom (2007) 21(20): 3357-3364
Methods for mapping of interaction networks involving membrane proteins
Hooker BS, Bigelow DJ, Lin CT.
Biochem Biophys Res Commun (2007) 363(3): 457-61
Affinity-based chemical proteomic probe for dehydrogenases: Fluorescence and visible binding assays in gels
Ge X, Sem DS.
Anal Biochem (2007) 370(2): 171-9
Snake venomics. Strategy and applications
Juan J. Calvete, Paula Juárez, Libia Sanz
Journal of Mass Spectrometry (2007) 42(11): 1405-1414
A density-based proteomics sample fractionation technology: folate deficiency induced oxidative stress response in liver and brain
Lan W, Guhaniyogi J, Horn MJ, Xia JQ, Graham B.
J Biomol Tech (2007) 18(4): 213-25
Imaging mass spectrometry in biological tissues by laser ablation inductively coupled plasma mass spectrometry
Becker JS, Becker JS, Zoriy MV, Dobrowolska J, Matucsh A.
Eur J Mass Spectrom (Chichester, Eng) (2007) 13(1): 1-6
Simultaneous metabolic labeling of cells with multiple amino acids: Localization and dynamics of histone acetylation and methylation
Chen Ren, Shujun Liu, Kalpana Ghoshal, Pang-Hung Hsu, Samson T. Jacob, Guido Marcucci, Michael A. Freitas
PROTEOMICS - CLINICAL APPLICATIONS (2007) 1(10): 1338
Assessing Bias in Experiment Design for Large Scale Mass Spectrometry-based Quantitative Proteomics
Amol Prakash, Brian Piening, Jeff Whiteaker, Heidi Zhang, Scott A. Shaffer, Daniel Martin, Laura Hohmann, Kelly Cooke, James M. Olson, Stacey Hansen, Mark R. Flory, Hookeun Lee, Julian Watts, David R. Goodlett, Ruedi Aebersold, Amanda Paulovich, and Benno Schwikowski
Mol Cell Proteomics (2007) 6(10): 1741-1748
Selective Anchoring of TFIID to Nucleosomes by Trimethylation of Histone H3 Lysine 4
Vermeulen M, Mulder KW, Denissov S, Pijnappel WW, van Schaik FM, Varier RA, Baltissen MP, Stunnenberg HG, Mann M, Timmers HT.
Cell (2007) 131(1): 58-69
Dual-tagging system for the affinity purification of mammalian protein complexes
Giannone RJ, McDonald WH, Hurst GB, Huang Y, Wu J, Liu Y, Wang Y.
Biotechniques (2007) 43(3): 300 passim
Tandem mass spectrometry for the detection of plant pathogenic fungi and the effects of database composition on protein inferences
Neerav D. Padliya, Wesley M. Garrett, Kimberly B. Campbell, David L. Tabb, Bret Cooper
PROTEOMICS (2007) 7(21): 3932-3942
Integrated Membrane Protein Analysis of Mature and Embryonic Stem Cell-derived Smooth Muscle Cells Using a Novel Combination of CyDye/Biotin Labeling
Anissa Sidibe, Xiaoke Yin, Edward Tarelli, Qingzhong Xiao, Anna Zampetaki, Qingbo Xu, and Manuel Mayr
Mol Cell Proteomics (2007) 6(10): 1788-1797
Quantitative Comparison of IMAC and TiO(2) Surfaces Used in the Study of Regulated, Dynamic Protein Phosphorylation
Liang X, Fonnum G, Hajivandi M, Stene T, Kjus NH, Ragnhildstveit E, Amshey JW, Predki P, Pope RM.
J Am Soc Mass Spectrom (2007) 18(11): 1932-1944
Native PAGE eliminates the problem of PEG-SDS interaction in SDS-PAGE and provides an alternative to HPLC in characterization of protein PEGylation
Chunyang Y. Zheng, Guanghui Ma, Zhiguo Su
ELECTROPHORESIS (2007) 28(19): 3578
Fast Multiple Electron Capture Dissociation in a Linear Radio Frequency Quadrupole Ion Trap
Satake H, Hasegawa H, Hirabayashi A, Hashimoto Y, Baba T, Masuda K.
Anal Chem Early Edition: published 29-Sep-2007
A novel pyrimidine-based stable-isotope labeling reagent and its application to quantitative analysis using matrix-assisted laser desorption/ionization mass spectrometry
Jing Zhang, Li Zhang, Ying Zhou, Yin-Long Guo
Journal of Mass Spectrometry (2007) 42(11): 1514-1521
Tandem mass spectrometry acquisition approaches to enhance identification of protein-protein interactions using low-energy collision-induced dissociative chemical crosslinking reagents
Erik J. Soderblom, Benjamin G. Bobay, John Cavanagh, Michael B. Goshe
Rapid Communications in Mass Spectrometry (2007) 21(21): 3395-3408
Prompt disulfide fragmentations of disulfide-containing proteins in a matrix-assisted laser desorption/ionization source
Xiaoyan Qiu, Meng Cui, Huilin Li, Zhiqiang Liu, Shuying Liu
Rapid Communications in Mass Spectrometry (2007) 21(21): 3520-3525
Analysis of opioid peptides by on-line SPE-CE-ESI-MS
Elena Hernández, Fernando Benavente, Victoria Sanz-Nebot, José Barbosa
ELECTROPHORESIS (2007) 28(21): 3957-3965
Direct chemiluminescent imaging detection of human serum proteins in two-dimensional polyacrylamide gel electrophoresis
Qian Tao, Zhenzhen Wang, Heping Zhao, Willy R. G. Baeyens, Joris R. Delanghe, Lingyun Huang, Jin Ouyang, Dacheng He, Xianhua Zhang
PROTEOMICS (2007) 7(19): 3481-3490
Safe and Convenient Fluorescent Stain Imager for Proteome Analysis
Terakawa, Takahiro; Keicho, Naoto; Uchida, Chiyoko; Uchida, Takafumi
Current Proteomics (2007) 4(2): 115-120
Comparative Genomics and Proteomics in Drug Discovery. By John Parrington and Kevin Coward (Eds.)
Marc A. Reymond
PROTEOMICS - CLINICAL APPLICATIONS (2007) 1(10): 1336-1337
Comparative Genomics and Proteomics in Drug Discovery Edited by J. Parrington and K. Coward. Taylor and Francis, New York. 2007. vii + 182 pp. 16 x 24 cm. ISBN 978-0-415-39653-0. $198.00
Windle B.
J Med Chem (2007) 50(22): 5533
Metabolome Analysis: An Introduction Wiley-Interscience Series on Mass Spectrometry. By Silas G. Villas-Bôas, Ute Roessner, Michael A. E. Hansen, Jřrn Smedsgaard, Jens Nielsen
Frederique Lisacek
PROTEOMICS - CLINICAL APPLICATIONS (2007) 1(10): 1332
Biomacromolecules: Introduction to structure, Function and Informatics. By C. Stan Tsai
Pier Giorgio Righetti
PROTEOMICS - CLINICAL APPLICATIONS (2007) 1(10): 1333-1334
Metabolome Analysis: An Introduction. By Silas G. Villas-Bôas, Ute Roessner, Michael A. E. Hansen, Jřrn Smedsgaard, Jens Nielsen
Frederique Lisacek
PROTEOMICS (2007) 7(19): 3634
Biomacromolecules: Intrduction to structure, Function and Informatics. By C. Stan Tsai
Pier Giorgio Righetti
PROTEOMICS (2007) 7(19): 3635-3636
Cancer Biomarkers - Analytical Techniques for Discovery Wiley-Interscience Series on Mass Spectrometry. By Mahmoud H. Hamdan
Eric Schiffer
PROTEOMICS - CLINICAL APPLICATIONS (2007) 1(10): 1334-1335
Exploring the Human Plasma Proteome. By Gilbert Omenn (Ed.)
Giuliano Elia
PROTEOMICS - CLINICAL APPLICATIONS (2007) 1(10): 1335-1336
International Symposium on High Performance Proteomics 2007: A contribution to Proteomics May 14-16, 2007 Dortmund, Germany
Michael Hamacher, Petra Grünewald, Klaus Rammert, Nadine Palacios Bustamante, Tanja Hardt, André van Hall, Helmut E. Meyer
PROTEOMICS (2007) 7(19): 3432-3435
Five years of progress in the Standardization of Proteomics Data 4th Annual Spring Workshop of the HUPO-Proteomics Standards Initiative April 23-25, 2007 Ecole Nationale Supérieure (ENS), Lyon, France
Sandra Orchard, Luisa Montechi-Palazzi, Eric W. Deutsch, Pierre-Alain Binz, Andrew R. Jones, Norman Paton, Angel Pizarro, David M. Creasy, Jérôme Wojcik, Henning Hermjakob
PROTEOMICS (2007) 7(19): 3436-3440
Cytoview: Development of a cell modelling framework
Khodade P, Malhotra S, Kumar N, Iyengar MS, Balakrishnan N, Chandra N.
J Biosci (2007) 32(5): 965-77
A genetic code alteration generates a proteome of high diversity in the human pathogen Candida albicans
Gomes AC, Miranda I, Silva RM, Moura GR, Thomas B, Akoulitchev A, Santos MA.
Genome Biol (2007) 8(10): R206
The protein microscope: incorporating mass spectrometry into cell biology
Bell AW, Nilsson T, Kearney RE, Bergeron JJ.
Nat Methods (2007) 4(10): 783-4
Reductive evolution of architectural repertoires in proteomes and the birth of the tripartite world
Wang M, Yafremava LS, Caetano-Anolles D, Mittenthal JE, Caetano-Anolles G.
Genome Res (2007) 17(11): 1572-1585