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SPS' DigestIssue 51, 16-May-2008 |
Significance analysis of microarray for relative quantitation of LC/MS data in proteomics
Roxas BA, Li Q.
BMC Bioinformatics (2008) 9(1): 187
ROC analysis: applications to the classification of biological sequences and 3D structures
Paolo Sonego, Andras Kocsor, and Sandor Pongor
Brief Bioinform (2008) 9(3): 198-209; doi:10.1093/bib/bbm064
Automatic Validation of Phosphopeptide Identifications by the MS2/MS3 Target-Decoy Search Strategy
Xinning Jiang, Guanghui Han, Shun Feng, Xiaogang Jiang, Mingliang Ye, Xuebiao Yao, and Hanfa Zou
JOURNAL OF PROTEOME RESEARCH (2008) 7(04): 1640-1649
Low-coverage massively parallel pyrosequencing of cDNAs enables proteomics in non-model species: Comparison of a species-specific database generated by pyrosequencing with databases from related species for proteome analysis of pea chloroplast envelopes
Bräutigam A, Shrestha RP, Whitten D, Wilkerson CG, Carr KM, Froehlich JE, Weber AP.
J Biotechnol Early Edition: published 17-Feb-2008
MassNet: a functional annotation service for protein mass spectrometry data
Park D, Kim BC, Cho SW, Park SJ, Choi JS, Kim SI, Bhak J, Lee S.
Nucleic Acids Res Early Edition: published 29-Apr-2008
GlycoBase and autoGU: tools for HPLC-based glycan analysis
Matthew P. Campbell, Louise Royle, Catherine M. Radcliffe, Raymond A. Dwek, and Pauline M. Rudd
Bioinformatics (2008) 24(9): 1214-1216
ProdoNet: identification and visualization of prokaryotic gene regulatory and metabolic networks
Klein J, Leupold S, Münch R, Pommerenke C, Johl T, Kärst U, Jänsch L, Jahn D, Retter I.
Nucleic Acids Res Early Edition: published 25-Apr-2008
Statistical Similarities between Transcriptomics and Quantitative Shotgun Proteomics Data
Norman Pavelka, Marjorie L. Fournier, Selene K. Swanson, Mattia Pelizzola, Paola Ricciardi-Castagnoli, Laurence Florens, and Michael P. Washburn
Mol Cell Proteomics (2008) 7(4): 631-644
Accelerating String Set Matching in FPGA Hardware for Bioinformatics Research
Dandass YS, Burgess SC, Lawrence M, Bridges SM.
BMC Bioinformatics (2008) 9(1): 197
Installation and use of the Computational Proteomics Analysis System (CPAS)
Myers T, Law W, Eng JK, McIntosh M
Curr Protoc Bioinformatics (2007) Chapter 13: Unit 13.5
Systematic Approach for Validating the Ubiquitinated Proteome
Seyfried NT, Xu P, Duong DM, Cheng D, Hanfelt J, Peng J
Anal Chem Early Edition: published 2008 Apr 24
PepLine: A Software Pipeline for High-Throughput Direct Mapping of Tandem Mass Spectrometry Data on Genomic Sequences
Myriam Ferro, Marianne Tardif, Erwan Reguer, Romain Cahuzac, Christophe Bruley, Thierry Vermat, Estelle Nugues, Marielle Vigouroux, Yves Vandenbrouck, Jérôme Garin, and Alain Viari
JOURNAL OF PROTEOME RESEARCH (2008) 7(05): 1873-1883
A Hybrid Method for Peptide Identification Using Integer Linear Optimization, Local Database Search, and Quadrupole Time-of-Flight or OrbiTrap Tandem Mass Spectrometry
Peter A. DiMaggio, Jr., Christodoulos A. Floudas, Bingwen Lu, and John R. Yates, III
JOURNAL OF PROTEOME RESEARCH (2008) 7(04): 1584-1593
Proteiomic patterns for endometrial cancer using SELDI-TOF-MS
Zhu LR, Zhang WY, Yu L, Zheng YH, Hu J, Liao QP.
J Zhejiang Univ Sci B (2008) 9(4): 286-90
Identification of lung cancer patients by serum protein profiling using surface-enhanced laser desorption/ionization time-of-flight mass spectrometry
Han KQ, Huang G, Gao CF, Wang XL, Ma B, Sun LQ, Wei ZJ.
Am J Clin Oncol (2008) 31(2): 133-9
ISPIDER Central: an integrated database web-server for proteomics
Siepen JA, Belhajjame K, Selley JN, Embury SM, Paton NW, Goble CA, Oliver SG, Stevens R, Zamboulis L, Martin N, Poulovassillis A, Jones P, Côté R, Hermjakob H, Pentony MM, Jones DT, Orengo CA, Hubbard SJ.
Nucleic Acids Res Early Edition: published 25-Apr-2008
Steps towards a repertoire of comprehensive maps of human protein interaction networks: the Human Proteotheque Initiative (HuPI)
Coulombe B, Blanchette M, Jeronimo C.
Biochem Cell Biol (2008) 86(2): 149-56
Using the Proteomics Identifications Database (PRIDE)
Martens L, Jones P, Cote R
Curr Protoc Bioinformatics (2008) Chapter 13: Unit 13.8
HIP2: An Online Database of Human Plasma Proteins from Healthy Individuals
Saha S, Harrison SH, Shen C, Tang H, Radivojac P, Arnold RJ, Zhang X, Chen JY.
BMC Med Genomics (2008) 1(1): 12
CrossSearch, a User-friendly Search Engine for Detecting Chemically Cross-linked Peptides in Conjugated Proteins
Owen W. Nadeau, Gerald J. Wyckoff, Justin E. Paschall, Antonio Artigues, Jessica Sage, Maria T. Villar, and Gerald M. Carlson
Mol Cell Proteomics (2008) 7(4): 739-749
A cross-validation study to select a classification procedure for clinical diagnosis based on proteomic mass spectrometry
Valkenborg D, Van Sanden S, Lin D, Kasim A, Zhu Q, Haldermans P, Jansen I, Shkedy Z, Burzykowski T.
Stat Appl Genet Mol Biol (2008) 7: Article12
An a posteriori calibration method for improving protein identification accuracy in proteomics using electrospray ionization time-of-flight tandem mass spectrometry
Ishino Y, Taniguchi H.
Rapid Commun Mass Spectrom (2008) 22(8): 1335-8
Serum protein profiling in mice: Identification of Factor XIIIa as a potential biomarker for muscular dystrophy
Sharmini Alagaratnam, Bart J. A. Mertens, Johannes C. Dalebout, André M. Deelder, Gert-Jan B. van Ommen, Johan T. den Dunnen, Peter A. C. 't Hoen
PROTEOMICS (2008) 8(8): 1552-1563
A Web-based Tool for in Silico Biomarker Discovery Based on Tissue-specific Protein Profiles in Normal and Cancer Tissues
Erik Bjorling, Cecilia Lindskog, Per Oksvold, Jerker Linne, Caroline Kampf,Sophia Hober, Mathias Uhlen, and Fredrik Ponten
Mol Cell Proteomics (2008) 7(5): 825-844
Using ProSight PTM and related tools for targeted protein identification and characterization with high mass accuracy tandem MS data
Leduc RD, Kelleher NL
Curr Protoc Bioinformatics (2007) Chapter 13: Unit 13.6
Analysis of iTRAQ data using Mascot and Peaks quantification algorithms
Lacerda CM, Xin L, Rogers I, Reardon KF.
Brief Funct Genomic Proteomic Early Edition: published 4-Apr-2008
SALAMI (Spectrum ALignments Using High Accuracy Mass and HIgh Sensitivity Data): How To Make the Best out of Hybrid MS/MS Data
Flavio Monigatti and Hanno Steen
JOURNAL OF PROTEOME RESEARCH (2008) 7(05): 1984-1993
Peak Bagging for Peptide Mass Fingerprinting
He Z, Yang C, Yu W.
Bioinformatics Early Edition: published 7-Apr-2008
PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows
Deutsch EW, Lam H, Aebersold R.
EMBO Rep (2008) 9(5): 429-34
Overview of kidney and urine proteome databases
Yoshida Y, Miyamoto M, Bo X, Yaoita E, Yamamoto T.
Contrib Nephrol (2008) 160: 186-97
IMGT, the international ImMunoGeneTics information system for Immunoinformatics. Methods for querying IMGT databases, tools, and Web resources in the context of immunoinformatics
Lefranc MP.
Methods Mol Biol (2007) 409: 19-42
Using GFS to identify encoding genomic loci from protein mass spectral data
Holmes MR, Giddings MC
Curr Protoc Bioinformatics (2008) Chapter 13: Unit 13.9
Comparison of Mascot and X!Tandem Performance for Low and High Accuracy Mass Spectrometry and the Development of an Adjusted Mascot Threshold
Markus Brosch, Sajani Swamy, Tim Hubbard, and Jyoti Choudhary
Mol Cell Proteomics (2008) 7(5): 962-970
MASIC: A software program for fast quantitation and flexible visualization of chromatographic profiles from detected LC-MS(/MS) features
Monroe ME, Shaw JL, Daly DS, Adkins JN, Smith RD.
Comput Biol Chem Early Edition: published 26-Feb-2008
Overview of tandem mass spectrometry (MS/MS) database search algorithms
Kapp E, Schutz F
Curr Protoc Protein Sci (2007) Chapter 25: Unit25.2
Using support vector machine combined with auto covariance to predict protein-protein interactions from protein sequences
Guo Y, Yu L, Wen Z, Li M.
Nucleic Acids Res Early Edition: published 4-Apr-2008
EPO-KB: A searchable knowledge base of biomarker to protein links
Lustgarten JL, Kimmel C, Ryberg H, Hogan W.
Bioinformatics Early Edition: published 9-Apr-2008
GlycoWorkbench: A Tool for the Computer-Assisted Annotation of Mass Spectra of Glycans
Alessio Ceroni, Kai Maass, Hildegard Geyer, Rudolf Geyer, Anne Dell, and Stuart M. Haslam
JOURNAL OF PROTEOME RESEARCH (2008) 7(04): 1650-1659
Mathematical biodescriptors of proteomics maps: Background and applications
Basak SC, Gute BD
Curr Opin Drug Discov Devel (2008) 11(3): 320-6
The Reductive Desulfurization of Met and Cys Residues in Bovine RNase A Is Associated with trans Lipids Formation in a Mimetic Model of Biological Membranes
Carla Ferreri, Chryssostomos Chatgilialoglu, Armida Torreggiani, Anna Maria Salzano, Giovanni Renzone, and Andrea Scaloni
JOURNAL OF PROTEOME RESEARCH (2008) 7(05): 2007-2015
Mapping the Larval Midgut Lumen Proteome of Helicoverpa armigera, a Generalist Herbivorous Insect
Yannick Pauchet, Alexander Muck, Aleš Svatoš, David G. Heckel, and Susanne Preiss
JOURNAL OF PROTEOME RESEARCH (2008) 7(04): 1629-1639
Proteomic and Metabolomic Analysis of Smooth Muscle Cells Derived From the Arterial Media and Adventitial Progenitors of Apolipoprotein E-Deficient Mice
Mayr M, Zampetaki A, Sidibe A, Mayr U, Yin X, De Souza AI, Chung YL, Madhu B, Quax PH, Hu Y, Griffiths JR, Xu Q.
Circ Res Early Edition: published 3-Apr-2008
Nuclear proteome analysis of undifferentiated mouse embryonic stem and germ cells
Buhr N, Carapito C, Schaeffer C, Kieffer E, Van Dorsselaer A, Viville S.
Electrophoresis Early Edition: published 30-Apr-2008
Proteomics Studies of Brassinosteroid Signal Transduction Using Prefractionation and Two-dimensional DIGE
Wenqiang Tang, Zhiping Deng, Juan A. Oses-Prieto, Nagi Suzuki, Shengwei Zhu, Xin Zhang, Alma L. Burlingame, and Zhi-Yong Wang
Mol Cell Proteomics (2008) 7(4): 728-738
Quantitative Shotgun Proteomics of Enriched Heterocysts from Nostoc sp. PCC 7120 Using 8-Plex Isobaric Peptide Tags
Saw Yen Ow, Tanai Cardona, Arnaud Taton, Ann Magnuson, Peter Lindblad, Karin Stensjö, and Phillip C. Wright
JOURNAL OF PROTEOME RESEARCH (2008) 7(04): 1615-1628
Trafficking and Postsecretory Events Responsible for the Formation of Secreted Human Salivary Peptides: A Proteomics Approach
Irene Messana, Tiziana Cabras, Elisabetta Pisano, Maria Teresa Sanna, Alessandra Olianas, Barbara Manconi, Mariagiuseppina Pellegrini, Gaetano Paludetti, Emanuele Scarano, Antonella Fiorita, Stefania Agostino, Alessia M. Contucci, Lea Calo, Pasqualina M. Picciotti, Armando Manni, Anders Bennick, Alberto Vitali, Chiara Fanali, Rosanna Inzitari, and Massimo Castagnola
Mol Cell Proteomics (2008) 7(5): 911-926
Sodium-deoxycholate-assisted tryptic digestion and identification of proteolytically resistant proteins
Lin Y, Zhou J, Bi D, Chen P, Wang X, Liang S.
Anal Biochem Early Edition: published 14-Mar-2008
Proteomic Analysis of Hepatic Protein Profiles in Rare Minnow (Gobiocypris rarus) Exposed to Perfluorooctanoic Acid
Yanhong Wei, Leo. L. Chan, Dazhi Wang, Hongxia Zhang, Jianshe Wang, and Jiayin Dai
JOURNAL OF PROTEOME RESEARCH (2008) 7(04): 1729-1739
Proteomic characterisation of the conditioned media produced by the visceral endoderm-like cell lines HepG2 and End2: Towards a defined medium for the osteogenic/chondrogenic differentiation of embryonic stem cells
Kang Y, Nagy JM, Polak JM, Mantalaris A.
Stem Cells Dev Early Edition: published 31-Mar-2008
Rooteomics: the challenge of discovering plant defense-related proteins in roots
Mehta A, Magalhães BS, Souza DS, Vasconcelos EA, Silva LP, Grossi-de-Sa MF, Franco OL, da Costa PH, Rocha TL.
Curr Protein Pept Sci (2008) 9(2): 108-16
Proteomic analysis of pathogenesis-related proteins (PRs) induced by compatible and incompatible interactions of pepper mild mottle virus (PMMoV) in Capsicum chinense L3 plants
Elvira MI, Galdeano MM, Gilardi P, GarcÃa-Luque I, Serra MT.
J Exp Bot Early Edition: published 28-Mar-2008
Sorting signals, N-terminal modifications and abundance of the chloroplast proteome
Zybailov B, Rutschow H, Friso G, Rudella A, Emanuelsson O, Sun Q, van Wijk KJ
PLoS ONE (2008) 3(4): e1994
Predominant Release of Lysosomal Enzymes by Newborn Rat Microglia After LPS Treatment Revealed by Proteomic Studies
Jun Liu, Zhen Hong, Jianqing Ding, Jianrong Liu, Jing Zhang, and Shengdi Chen
JOURNAL OF PROTEOME RESEARCH (2008) 7(05): 2033-2049
Rapid MALDI-TOF-MS analysis in the study of interaction between whole bacterial cells and human target molecules: Binding of Bifidobacterium to human plasminogen
Candela M, Fiori J, Dipalo S, Naldi M, Gotti R, Brigidi P
J Microbiol Methods Early Edition: published 2008 Mar 6
Protein fingerprints of cultured CA3-CA1 hippocampal neurons: comparative analysis of the distribution of synaptosomal and cytosolic proteins
Corti V, Sanchez-Ruiz Y, Piccoli G, Bergamaschi A, Cannistraci CV, Pattini L, Cerutti S, Bachi A, Alessio M, Malgaroli A.
BMC Neurosci (2008) 9(1): 36
Synthesis, Chaperoning, and Metabolism of Proteins Are Regulated by NT-3/TrkC Signaling in the Medulloblastoma Cell Line DAOY
Mariella Gruber-Olipitz, Thomas Ströbel, Wei-Qiang Chen, Michael A. Grotzer, Franz Quehenberger, Irene Slavc, and Gert Lubec
JOURNAL OF PROTEOME RESEARCH (2008) 7(05): 1932-1944
A Combined Metabolomic and Proteomic Investigation of the Effects of a Failure to Express Dystrophin in the Mouse Heart
Melanie K. Gulston, Denis V. Rubtsov, Helen J. Atherton, Kieran Clarke, Kay E. Davies, Kathryn S. Lilley, and Julian L. Griffin
JOURNAL OF PROTEOME RESEARCH (2008) 7(05): 2069-2077
Shotgun proteomic analysis of vaginal fluid from women in late pregnancy
Klein LL, Jonscher KR, Heerwagen MJ, Gibbs RS, McManaman JL
Reprod Sci (2008) 15(3): 263-73
Protective effects of peroxiredoxin-1 at the injured blood-brain barrier
Schreibelt G, van Horssen J, Haseloff RF, Reijerkerk A, van der Pol SM, Nieuwenhuizen O, Krause E, Blasig IE, Dijkstra CD, Ronken E, de Vries HE.
Free Radic Biol Med Early Edition: published 16-Apr-2008
Elucidation of lipoprotein particles structure by proteomic analysis
Tonino Alonzi, Carmine Mancone, Laura Amicone, and Marco Tripodi
Expert Review of Proteomics (2008) 5(1): 91-104
Arabidopsis thaliana mutants reveal a role for CSP41a and CSP41b, two ribosome-associated endonucleases, in chloroplast ribosomal RNA metabolism
Beligni MV, Mayfield SP.
Plant Mol Biol Early Edition: published 9-Apr-2008
Modulation of the Phagosome Proteome by Interferon-{gamma}
Isabelle Jutras, Mathieu Houde, Nathan Currier, Jonathan Boulais, Sophie Duclos, Sylvie LaBoissiere, Eric Bonneil, Paul Kearney, Pierre Thibault, Eustache Paramithiotis, Patrice Hugo, and Michel Desjardins
Mol Cell Proteomics (2008) 7(4): 697-715
Differential Protein Expression Following Low Temperature Culture of Suspension CHO-K1 Cells
Kumar N, Gammell P, Meleady P, Henry M, Clynes M
BMC Biotechnol (2008) 8(1): 42
Proteome of human minor salivary gland secretion
Siqueira WL, Salih E, Wan DL, Helmerhorst EJ, Oppenheim FG
J Dent Res (2008) 87(5): 445-50
Proteomic analysis of hearts from frataxin knockout mice: Marked rearrangement of energy metabolism, a response to cellular stress and altered expression of proteins involved in cell structure, motility and metabolism
Robert Sutak, Xiangcong Xu, Megan Whitnall, Mohammed Abul Kashem, Daniel Vyoral, Des R. Richardson
PROTEOMICS (2008) 8(8): 1731-1741
Phosphoproteome Analysis of Drosophila melanogaster Embryos
Bo Zhai, Judit Villén, Sean A. Beausoleil, Julian Mintseris, and Steven P. Gygi
JOURNAL OF PROTEOME RESEARCH (2008) 7(04): 1675-1682
New Insight into Stimulus-Induced Plasticity of the Olfactory Epithelium in Mus musculus by Quantitative Proteomics
Jon Barbour, Eva M. Neuhaus, Heike Piechura, Nadine Stoepel, Anastasia Mashukova, Daniela Brunert, Barbara Sitek, Kai Stühler, Helmut E. Meyer, Hanns Hatt, and Bettina Warscheid
JOURNAL OF PROTEOME RESEARCH (2008) 7(04): 1594-1605
Quantitative Proteomics Reveals Regulation of Dynamic Components within TATA-binding Protein (TBP) Transcription Complexes
Florence Mousson, Annemieke Kolkman, W. W. M. Pim Pijnappel, H. Th. Marc Timmers, and Albert J. R. Heck
Mol Cell Proteomics (2008) 7(5): 845-852
Differential soluble protein expression between Trichomonas vaginalis isolates exhibiting low and high virulence phenotypes
Patrícia Cuervo, Elisa Cupolillo, Constança Britto, Luis Javier González, Fernando Costa e Silva-Filho, Letícia Coutinho Lopes, Gilberto Barbosa Domont, Jose Batista De Jesus
Journal of Proteomics (2008) 71(1): 109-122
Chilling stress-induced proteomic changes in rice roots
Lee DG, Ahsan N, Lee SH, Lee JJ, Bahk JD, Kang KY, Lee BH
J Plant Physiol Early Edition: published 2008 Apr 21
Multiple sclerosis-related proteins identified in cerebrospinal fluid by advanced mass spectrometry
Marcel P. Stoop, Lennard J. Dekker, Mark K. Titulaer, Peter C. Burgers, Peter A. E. Sillevis Smitt, Theo M. Luider, Rogier Q. Hintzen
PROTEOMICS (2008) 8(8): 1576-1585
Proteomic analysis of the winter-protected phenotype of hibernating ground squirrel intestine
Martin SL, Epperson LE, Rose JC, Kurtz CC, Ane C, Carey HV
Am J Physiol Regul Integr Comp Physiol Early Edition: published 2008 Apr 23
A Differential Proteomic Approach Reveals an Evolutionary Conserved Regulation of Nme Proteins by Fe65 in C. elegans and Mouse
Napolitano F, D'Angelo F, Bimonte M, Perrina V, D'Ambrosio C, Scaloni A, Russo T, Zambrano N.
Neurochem Res Early Edition: published 10-Apr-2008
Characterization of Domain Interfaces in Monomeric and Dimeric ATP Synthase
Ilka Wittig, Jean Velours, Rosemary Stuart, and Hermann Schagger
Mol Cell Proteomics (2008) 7(5): 995-1004
Proteomics as a Complementary Tool for Identifying Unintended Side Effects Occurring in Transgenic Maize Seeds As a Result of Genetic Modifications
Lello Zolla, Sara Rinalducci, Paolo Antonioli, and Pier Giorgio Righetti
JOURNAL OF PROTEOME RESEARCH (2008) 7(05): 1850-1861
Chromatin proteomics and epigenetic regulatory circuits
Clemens Bonisch, Sonja M Nieratschker, Nikos K Orfanos, and Sandra B Hake
Expert Review of Proteomics (2008) 5(1): 105-119
Proteomics Analysis of Rice Lesion Mimic Mutant (spl1) Reveals Tightly Localized Probenazole-Induced Protein (PBZ1) in Cells Undergoing Programmed Cell Death
Sun Tae Kim, Sang Gon Kim, Young Hyun Kang, Yiming Wang, Jae-Yean Kim, Nari Yi, Ju-Kon Kim, Randeep Rakwal, Hee-Jong Koh, and Kyu Young Kang
JOURNAL OF PROTEOME RESEARCH (2008) 7(04): 1750-1760
Characterization of Tau in Cerebrospinal Fluid Using Mass Spectrometry
Erik Portelius, Sara F. Hansson, Ai Jun Tran, Henrik Zetterberg, Pierre Grognet, Eugeen Vanmechelen, Kina Höglund, Gunnar Brinkmalm, Ann Westman-Brinkmalm, Eckhard Nordhoff, Kaj Blennow, and Johan Gobom
JOURNAL OF PROTEOME RESEARCH (2008) 7(05): 2114-2120
Serum Proteomic Profiling Associated with Immune System Impaired by Stress Using ProteinChip Technology
Hui L, Diandong H, Baoxia Z, Da W, Hong Y, Xiaoyi W
Neuroimmunomodulation (2008) 14(6): 326-330
Differences in Hippocampal Protein Expression at 3 Days, 3 Weeks, and 3 Months Following Induction of Perinatal Asphyxia in the Rat
Rachel Weitzdörfer, Harald Höger, Gudrun Burda, Arnold Pollak, and Gert Lubec
JOURNAL OF PROTEOME RESEARCH (2008) 7(05): 1945-1952
Monitoring of transcriptome and proteome profiles to investigate the cellular response of E. coli towards recombinant protein expression under defined chemostat conditions
Dürrschmid K, Reischer H, Schmidt-Heck W, Hrebicek T, Guthke R, Rizzi A, Bayer K.
J Biotechnol Early Edition: published 4-Mar-2008
Interdisciplinary study for the evaluation of biochemical alterations on mussel Mytilus galloprovincialis exposed to a tributyltin-polluted area
Magi E, Liscio C, Pistarino E, Santamaria B, Di Carro M, Tiso M, Scaloni A, Renzone G, Cosulich ME.
Anal Bioanal Chem Early Edition: published 10-Apr-2008
Metabolic pathways of the wheat (Triticum aestivum) endosperm amyloplast revealed by proteomics
Dupont FM
BMC Plant Biol (2008) 8(1): 39
The Identification and Characterization of Membranome Components
Dhimankrishna Ghosh, Ron C. Beavis, and John A. Wilkins
JOURNAL OF PROTEOME RESEARCH (2008) 7(04): 1572-1583
Proteomic analysis of Staphylococcus aureus biofilms grown in vitro on mechanical heart valve leaflets
Bénard L, Litzler PY, Cosette P, Lemeland JF, Jouenne T, Junter GA.
J Biomed Mater Res A Early Edition: published 10-Apr-2008
Histone Acetylation and Chromatin Remodeling Are Required for UV-B-Dependent Transcriptional Activation of Regulated Genes in Maize
Casati P, Campi M, Chu F, Suzuki N, Maltby D, Guan S, Burlingame AL, Walbot V.
Plant Cell Early Edition: published 8-Apr-2008
Systematic characterization of the murine mitochondrial proteome using functionally validated cardiac mitochondria
Jun Zhang, Xiaohai Li, Michael Mueller, Yueju Wang, Chenggong Zong, Ning Deng, Thomas M. Vondriska, David A. Liem, Jeong-In Yang, Paavo Korge, Henry Honda, James N. Weiss, Rolf Apweiler, Peipei Ping
PROTEOMICS (2008) 8(8): 1564-1575
Characterization of a yjjQ mutant of avian pathogenic Escherichia coli (APEC)
Li G, Ewers C, Laturnus C, Diehl I, Alt K, Dai J, Antão EM, Schnetz K, Wieler LH.
Microbiology (2008) 154(Pt 4): 1082-1093
Psychoproteomic Analysis of Rat Cortex Following Acute Methamphetamine Exposure
Firas H. Kobeissy, Matthew W. Warren, Andrew K. Ottens, Shankar Sadasivan, Zhiqun Zhang, Mark S. Gold, and Kevin K. W. Wang
JOURNAL OF PROTEOME RESEARCH (2008) 7(05): 1971-1983
Proteomic identification of p53-dependent protein phosphorylation
Rahman-Roblick R, Hellman U, Becker S, Bader FG, Auer G, Wiman KG, Roblick UJ.
Oncogene Early Edition: published 28-Apr-2008
Analysis of the Zebrafish Proteome during Embryonic Development
Margaret B. Lucitt, Thomas S. Price, Angel Pizarro, Weichen Wu, Anastasia K. Yocum, Christoph Seiler, Michael A. Pack, Ian A. Blair, Garret A. FitzGerald, and Tilo Grosser
Mol Cell Proteomics (2008) 7(5): 981-994
Gold nanoparticles and oxidative stress in Mytilus edulis
Tedesco S, Doyle H, Redmond G, Sheehan D