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SPS' DigestIssue 52, 18-Jun-2008 |
Cardiovascular GO Annotation Initiative Year 1 Report: Why Cardiovascular GO?
Ruth C. Lovering, Emily Dimmer, Varsha K. Khodiyar, Daniel G. Barrell, Peter Scambler, Mike Hubank, Rolf Apweiler, Philippa J. Talmud
PROTEOMICS (2008) 8(10): 1950-1953
PATIKAmad: Putting microarray data into pathway context
Ozgun Babur, Recep Colak, Emek Demir, Ugur Dogrusoz
PROTEOMICS (2008) 8(11): 2196-2198
Computational methods for protein identification from mass spectrometry data
McHugh L, Arthur JW.
PLoS Comput Biol (2008) 4(2): e12
Integrating clinical, gene expression, protein expression and preanalytical data for in silico cancer research
Rossille D, Burgun A, Pangault-Lorho C, Fest T.
Stud Health Technol Inform (2008) 136: 455-60
Linear Discriminant Analysis-Based Estimation of the False Discovery Rate for Phosphopeptide Identifications
Xiuxia Du, Feng Yang, Nathan P. Manes, David L. Stenoien, Matthew E. Monroe, Joshua N. Adkins, David J. States, Samuel O. Purvine, David G. Camp, II, and Richard D. Smith
JOURNAL OF PROTEOME RESEARCH (2008) 7(06): 2195-2203
UniProtJAPI: a remote API for accessing UniProt data
Samuel Patient, Daniela Wieser, Michael Kleen, Ernst Kretschmann, Maria Jesus Martin, and Rolf Apweiler
Bioinformatics (2008) 24(10): 1321-1322; doi:10.1093/bioinformatics/btn122
PARPST: a PARallel algorithm to find peptide sequence tags
Brunetti S, Lodi E, Mori E, Stella M.
BMC Bioinformatics (2008) 9(Suppl 4): S11
Novel approaches to predict the retention of histidine-containing peptides in immobilized metal-affinity chromatography
Hongying Du, Xiaoyun Zhang, Jie Wang, Xiaojun Yao, Zhide Hu
PROTEOMICS (2008) 8(11): 2185-2195
Uncovering genes with divergent mRNA-protein dynamics in Streptomyces coelicolor
Jayapal KP, Philp RJ, Kok YJ, Yap MG, Sherman DH, Griffin TJ, Hu WS.
PLoS ONE (2008) 3(5): e2097
Using spectral moments of spiral networks based on PSA/mass spectra outcomes to derive quantitative proteome-disease relationships (QPDRs) and predicting prostate cancer
Ferino G, González-DÃaz H, Delogu G, Podda G, Uriarte E.
Biochem Biophys Res Commun (2008) 372(2): 320-5
Isoform Analysis of LC−MS/MS Data from Multidimensional Fractionation of the Serum Proteome
Alexei L. Krasnoselsky, Vitor M. Faca, Sharon J. Pitteri, Qing Zhang, and Samir M. Hanash
JOURNAL OF PROTEOME RESEARCH (2008) 7(06): 2546-2552
A review of algorithmic techniques for disulfide-bond determination
Rahul Singh
Brief Funct Genomic Proteomic (2008) 7(2): 157-172; doi:10.1093/bfgp/eln008
MTMDAT: Automated analysis and visualization of mass spectrometry data for tertiary and quaternary structure probing of proteins
Janosch Hennig, Klaus D. M. Hennig, and Maria Sunnerhagen
Bioinformatics (2008) 24(10): 1310-1312; doi:10.1093/bioinformatics/btn116
Statistical analysis of image data provided by two-dimensional gel electrophoresis for discovery proteomics
Crossett B, Edwards AV, White MY, Cordwell SJ.
Methods Mol Med (2008) 141: 271-85
Incorporating high-throughput proteomics experiments into structural biology pipelines: Identification of the low-hanging fruits
Roland A. Pache, Patrick Aloy
PROTEOMICS (2008) 8(10): 1959-1964
Interpretation of large-scale quantitative shotgun proteomic profiles for biomarker discovery
Isserlin R, Emili A.
Curr Opin Mol Ther (2008) 10(3): 231-42
A novel series of compositionally biased substitution matrices for comparing Plasmodium proteins
Brick K, Pizzi E.
BMC Bioinformatics (2008) 9(1): 236
MAPRes: Mining association patterns among preferred amino acid residues in the vicinity of amino acids targeted for post-translational modifications
Ishtiaq Ahmad, Wajahat M. Qazi, Ahmed Khurshid, Munir Ahmad, Daniel C. Hoessli, Iffat Khawaja, M. Iqbal Choudhary, Abdul R. Shakoori, Nasir-ud-Din
PROTEOMICS (2008) 8(10): 1954-1958
NetMHC-3.0: accurate web accessible predictions of human, mouse and monkey MHC class I affinities for peptides of length 8-11
Lundegaard C, Lamberth K, Harndahl M, Buus S, Lund O, Nielsen M.
Nucl Acids Res Early Edition: published 7-May-2008
A method for discovering transmembrane beta-barrel proteins in Gram-negative bacterial proteomes
Hu J, Yan C.
Comput Biol Chem Early Edition: published 1-Apr-2008
Cell interaction knowledgebase: an online database for innate immune cells, cytokines and chemokines
Chen S, Chinnaswamy A, Biswas SK, Goryachev AB, Yap CK, Lam KY, Tay CP, Low HS, Pokhilko A, Da-Jun T, Mishra SK.
In Silico Biol (2007) 7(6): 569-74
Using inferred residue contacts to distinguish between correct and incorrect protein models
Miller CS, Eisenberg D.
Bioinformatics Early Edition: published 29-May-2008
FFPred: an integrated feature-based function prediction server for vertebrate proteomes
Lobley AE, Nugent T, Orengo CA, Jones DT.
Nucl Acids Res Early Edition: published 7-May-2008
A Framework for the Automated Analysis of Subcellular Patterns in Human Protein Atlas Images
Justin Newberg and Robert F. Murphy
JOURNAL OF PROTEOME RESEARCH (2008) 7(06): 2300-2308
Identification and characterization of microbial proteins using peptide mass fingerprinting strategies
Arthur JW.
Methods Mol Med (2008) 141: 257-70
IMGT((R)), the International ImMunoGeneTics Information System((R) )for Immunoinformatics : Methods for Querying IMGT((R)) Databases, Tools, and Web Resources in the Context of Immunoinformatics
Lefranc MP.
Mol Biotechnol Early Edition: published 8-May-2008
Computational Approaches to Protein-Protein Docking
Lee, Kyoungrim; Lee, Joo-Woon
Current Proteomics (2008) 5(1): 10-19
Proteomic and phosphoproteomic analysis of cellular responses in medaka fish (Oryzias latipes) following oral gavage with microcystin-LR
Mezhoud K, Bauchet AL, Château-Joubert S, Praseuth D, Marie A, François JC, Fontaine JJ, Jaeg JP, Cravedi JP, Puiseux-Dao S, Edery M.
Toxicon Early Edition: published 25-Mar-2008
Proteomic Identification of the Cus System as a Major Determinant of Constitutive Escherichia coli Silver Resistance of Chromosomal Origin
Chun-Nam Lok, Chi-Ming Ho, Rong Chen, Paul Kwong-Hang Tam, Jen-Fu Chiu, and Chi-Ming Che
JOURNAL OF PROTEOME RESEARCH (2008) 7(06): 2351-2356
Bacillus anthracis Spores Influence ATP Synthase Activity in Murine Macrophages
Seo GM, Jung KH, Kim SJ, Kim JC, Yoon JW, Oh KK, Lee JH, Chai YG.
J Microbiol Biotechnol (2008) 18(4): 778-83
MicroRNA and proteome expression profiling in early-symptomatic ?-synuclein(A30P)-transgenic mice
Frank Gillardon, Matthias Mack, Wolfgang Rist, Cathrin Schnack, Martin Lenter, Tobias Hildebrandt, Bastian Hengerer
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(5): 697-705
Metabolic Action of Thyroid Hormones: Insights from Functional and Proteomic Studies
Silvestri, Elena; Lombardi, Assunta; Lange, Pieter d.; Lanni, Antonia; Goglia, Fernando; Moreno, Maria
Current Proteomics (2008) 5(1): 45-61
Searching for candidate speciation genes using a proteomic approach: seminal proteins in field crickets
Andrés JA, Maroja LS, Harrison RG.
Proc Biol Sci Early Edition: published 21-May-2008
Cysteine proteinases regulate chloroplast protein content and composition in tobacco leaves: a model for dynamic interactions with ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) vesicular bodies
Prins A, van Heerden PD, Olmos E, Kunert KJ, Foyer CH.
J Exp Bot (2008) 59(7): 1935-50
Integrative proteomic analysis of the nucleus accumbens in rhesus monkeys following cocaine self-administration
Tannu NS, Howell LL, Hemby SE.
Mol Psychiatry Early Edition: published 27-May-2008
Proteomic and Metabolomic Analyses of the White-Rot Fungus Phanerochaete chrysosporium Exposed to Exogenous Benzoic Acid
Fumiko Matsuzaki, Motoyuki Shimizu, and Hiroyuki Wariishi
JOURNAL OF PROTEOME RESEARCH (2008) 7(06): 2342-2350
Chaperone proteins identified from synthetic proteasome inhibitor-induced inclusions in PC12 cells by proteomic analysis
Li X, Zhang Y, Hu Y, Chang M, Liu T, Wang D, Zhang Y, Zhang L, Hu L.
Acta Biochim Biophys Sin (Shanghai) (2008) 40(5): 406-18
Proteome of monocyte priming by lipopolysaccharide, including changes in interleukin 1 beta and leukocyte elastase inhibitor
Pabst MJ, Pabst KM, Handsman DB, Beranova-Giorgianni S, Giorgianni F.
Proteome Science (2008) 6(1): 13
Plastoglobule proteome
Grennan AK.
Plant Physiol (2008) 147(2): 443-5
An evaluation of the basis and consequences of a stay-green mutation in the navel negra (nan) citrus mutant using transcriptomic and proteomic profiling and metabolite analysis
Alos E, Roca M, Iglesias DJ, Minguez-Mosquera MI, Damasceno CM, Thannhauser TW, Rose JK, Talon M, Cercos M.
Plant Physiol Early Edition: published 8-May-2008
Redox proteomics: understanding oxidative stress in the progression of age-related neurodegenerative disorders
Butterfield DA, Sultana R
Expert Rev Proteomics (2008) 5(2): 157-60
Proteomic analyses of Fusarium graminearum grown under mycotoxin-inducing conditions
Rebecca D. Taylor, Audrey Saparno, Barbara Blackwell, Valar Anoop, Steve Gleddie, Nicholas A. Tinker, Linda J. Harris
PROTEOMICS (2008) 8(11): 2256-2265
Global and comparative protein profiles of the pronotum of the southern pine beetle, Dendroctonus frontalis
Pechanova O, Stone WD, Monroe W, Nebeker TE, Klepzig KD, Yuceer C.
Insect Mol Biol (2008) 17(3): 261-77
Different Signaling Pathways Expressed by Chicken Naïve CD4+ T Cells, CD4+ Lymphocytes Activated with Staphylococcal Enterotoxin B, and Those Malignantly Transformed by Marek’s Disease Virus
Joram J. Buza and Shane C. Burgess
JOURNAL OF PROTEOME RESEARCH (2008) 7(06): 2380-2387
The rat sperm proteome characterized via IPG strip prefractionation and LC-MS/MS identification
Mark A. Baker, Louise Hetherington, Gabi Reeves, Jörg Müller, R. John Aitken
PROTEOMICS (2008) 8(11): 2312-2321
Identification of Genes Associated with Fumonisin Biosynthesis in Fusarium verticillioides via Proteomics and Quantitative Real-Time PCR
Choi YE, Shim WB.
J Microbiol Biotechnol (2008) 18(4): 648-57
Comparative proteomic analysis of brains of naturally aging mice
Yang S, Liu T, Li S, Zhang X, Ding Q, Que H, Yan X, Wei K, Liu S.
Neuroscience Early Edition: published 12-Apr-2008
Analysis of organelles within the nervous system: impact on brain and organelle functions
Tribl F, Meyer HE, Marcus K
Expert Rev Proteomics (2008) 5(2): 333-51
Proteomics in the study of hippocampal plasticity
Cobb SR, Pitt A
Expert Rev Proteomics (2008) 5(3): 393-404
Heat-shock protein-27, -70 and peroxiredoxin-II show molecular chaperone function in sickle red cells: Evidence from transgenic sickle cell mouse model
Andrea Biondani, Franco Turrini, Franco Carta, Alessandro Matté, Alida Filippini, Angela Siciliano, Yves Beuzard, Lucia De Franceschi
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(5): 706-719
Acid adaptation of Lactobacillus delbrueckii subsp. bulgaricus induces physiological responses at membrane and cytosolic levels that improves cryotolerance
Streit F, Delettre J, Corrieu G, Béal C.
J Appl Microbiol Early Edition: published 21-May-2008
Proteomic response to iron deficiency in tomato root
Jie Li, Xu-Dong Wu, Shan-Ting Hao, Xiu-Jie Wang, Hong-Qing Ling
PROTEOMICS (2008) 8(11): 2299-2311
Identification of Pasteurella multocida CHAPS-soluble outer membrane proteins
Tabatabai LB.
Avian Dis (2008) 52(1): 147-9
HDGF is dephosphorylated during the early steps of endothelial cell apoptosis in a caspase-dependent way
Clermont F, Gonzalez NS, Communi D, Franken S, Dumont JE, Robaye B.
J Cell Biochem Early Edition: published 8-May-2008
Proteomic analysis of miltefosine-resistant Leishmania reveals the possible involvement of eukaryotic initiation factor 4A (eIF4A)
Singh G, Chavan HD, Dey CS.
Int J Antimicrob Agents (2008) 31(6): 584-6
Proteomic analysis in the lichen Physcia adscendens exposed to cadmium stress
Rustichelli C, Visioli G, Kostecka D, Vurro E, Sanità di Toppi L, Marmiroli N.
Environ Pollut Early Edition: published 29-May-2008
Proteomic evolution of a wine yeast during the first hours of fermentation
Salvadó Z, Chiva R, RodrÃguez-Vargas S, Rández-Gil F, Mas A, Guillamón JM.
FEMS Yeast Res Early Edition: published 22-May-2008
Proteomic Analysis of Trypanosoma cruzi Resistance to Benznidazole
Hélida M. Andrade, Silvane M. F. Murta, Alex Chapeaurouge, Jonas Perales, Phillipe Nirdé, and Alvaro J. Romanha
JOURNAL OF PROTEOME RESEARCH (2008) 7(06): 2357-2367
Proteomic analysis of HuH-7 cells harboring in vitro-transcribed full-length hepatitis C virus 1b RNA
Xun M, Zhao SH, Cao CX, Song J, Shao MM, Chu YL.
Acta Pharmacol Sin (2008) 29(6): 720-7
Cellular proteins in influenza virus particles
Shaw ML, Stone KL, Colangelo CM, Gulcicek EE, Palese P.
PLoS Pathog (2008) 4(6): e1000085
Effects of Coffee Bean Aroma on the Rat Brain Stressed by Sleep Deprivation: A Selected Transcript- and 2D Gel-Based Proteome Analysis
Seo HS, Hirano M, Shibato J, Rakwal R, Hwang IK, Masuo Y.
J Agric Food Chem Early Edition: published 3-Jun-2008
Proteomic Analysis of Neonatal Mouse Brain: Evidence for Hypoxia- and Ischemia-Induced Dephosphorylation of Collapsin Response Mediator Proteins
Yuan Zhou, Inderjeet Bhatia, Zhen Cai, Qing-Yu He, Pik-To Cheung, and Jen-Fu Chiu
JOURNAL OF PROTEOME RESEARCH (2008) 7(06): 2507-2515
Analysis of outer membrane vesicle associated proteins isolated from the plant pathogenic bacterium Xanthomonas campestris pv. campestris
Sidhu VK, Vorhoelter FJ, Niehaus K, Watt SA.
BMC Microbiol (2008) 8(1): 87
Retroviral proteomics and interactomes: intricate balances of cell survival and viral replication
Van Duyne R, Kehn-Hall K, Klase Z, Easley R, Heydarian M, Saifuddin M, Wu W, Kashanchi F
Expert Rev Proteomics (2008) 5(3): 507-28
A proteomic approach to the identification of the major virion structural proteins of the marine cyanomyovirus S-PM2
Clokie MR, Thalassinos K, Boulanger P, Slade SE, Stoilova-McPhie S, Cane M, Scrivens JH, Mann NH.
Microbiology (2008) 154(Pt 6): 1775-82
Toponomics and neurotoponomics: a new way to medical systems biology
Schubert W, Bode M, Hillert R, Krusche A, Friedenberger M
Expert Rev Proteomics (2008) 5(2): 361-9
Changes in the proteome of Escherichia coli during growth at 15 degrees C after incubation at 2, 6 or 8 degrees C for 4 days
Jones TH, Johns MW, Gill CO.
Int J Food Microbiol (2008) 124(3): 299-302
Pathogenesis-related proteins in somatic hybrid rice induced by bacterial blight
Yu CL, Yan SP, Wang CC, Hu HT, Sun WN, Yan CQ, Chen JP, Yang L.
Phytochemistry Early Edition: published 3-Jun-2008
Comprehensive analysis of the mouse renal cortex using two-dimensional HPLC - tandem mass spectrometry
Zhao Y, Denner L, Haidacher SJ, Lejeune WS, Tilton RG.
Proteome Science (2008) 6(1): 15
Proteomic Analysis of Mouse Hypothalamus under Simulated Microgravity
Sarkar P, Sarkar S, Ramesh V, Kim H, Barnes S, Kulkarni A, Hall JC, Wilson BL, Thomas RL, Pellis NR, Ramesh GT.
Neurochem Res Early Edition: published 13-May-2008
The up-regulation of 14-3-3 proteins in Smad4 deficient epidermis and hair follicles at catagen
Cunzhong Yuan, Liyan Jiao, Leilei Yang, Wantao Ying, Zhishang Hu, Jinfeng Liu, Fang Cui, Lei Li, Linyi Qian, Yan Teng, Haiying Hang, Xiaohong Qian, Xiao Yang
PROTEOMICS (2008) 8(11): 2230-2243
Altered protein expression in neutrophils of calves treated with dexamethasone
Beveridge JD, Mitchell GB, Brewer D, Clark ME, Caswell JL.
Can J Vet Res (2008) 72(3): 249-52
Comparative proteome analyses of phosphorus responses in maize (Zea mays L.) roots of wild-type and low-P tolerant mutant reveal root characteristics associated with P-efficiency
Li K, Xu C, Li Z, Zhang K, Yang A, Zhang J.
Plant J Early Edition: published 19-May-2008
Biochemical characterization of membrane-associated septin from rat brain
Maimaitiyiming M, Kumanogoh H, Nakamura S, Nagata KI, Suzaki T, Maekawa S.
J Neurochem Early Edition: published 3-May-2008
Tissue imaging using MALDI-MS: a new frontier of histopathology proteomics
Fournier I, Wisztorski M, Salzet M
Expert Rev Proteomics (2008) 5(3): 413-24
Synapse proteomics: current status and quantitative applications
Li KW, Jimenez CR
Expert Rev Proteomics (2008) 5(2): 353-60
Dachshund inhibits oncogene-induced breast cancer cellular migration and invasion through suppression of interleukin-8
Wu K, Katiyar S, Li A, Liu M, Ju X, Popov VM, Jiao X, Lisanti MP, Casola A, Pestell RG.
Proc Natl Acad Sci U S A (2008) 105(19): 6924-9
Proteomic analysis of proteins associated with body mass and length in yellow perch, Perca flavescens
John Mark Reddish, Normand St-Pierre, Andy Nichols, Kari Green-Church, Macdonald Wick
PROTEOMICS (2008) 8(11): 2333-2343
Temporal Profiling of the Chromatin Proteome Reveals System-wide Responses to Replication Inhibition
Khoudoli GA, Gillespie PJ, Stewart G, Andersen JS, Swedlow JR, Blow JJ.
Curr Biol (2008) 18(11): 838-43
A proteomic approach for evaluating the cell response to a novel histone deacetylase inhibitor in colon cancer cells
Milli A, Cecconi D, Campostrini N, Timperio AM, Zolla L, Righetti SC, Zunino F, Perego P, Benedetti V, Gatti L, Odreman F, Vindigni A, Righetti PG.
Biochim Biophys Acta Early Edition: published 4-May-2008
Developmental changes in the milk fat globule membrane proteome during the transition from colostrum to milk
Reinhardt TA, Lippolis JD.
J Dairy Sci (2008) 91(6): 2307-18
Multidimensional advancement of neuroproteomics
Veenstra TD, Marcus K
Expert Rev Proteomics (2008) 5(2): 149-51
A Metabonomic and Proteomic Analysis of Changes in IMCD3 Cells Chronically Adapted to Hypertonicity
Klawitter J, Rivard CJ, Brown LM, Capasso JM, Almeida NE, Maunsbach AB, Pihakaski-Maunsbach K, Berl T, Leibfritz D, Christians U, Chan L.
Nephron Physiol (2008) 109(1): p1-p10
Proteomic analysis of phosphoproteins regulated by abscisic acid in rice leaves
He H, Li J.
Biochem Biophys Res Commun (2008) 371(4): 883-8
Critical dependence of blood-borne biomarker concentrations on the half-lives of their carrier proteins
Araujo RP, Petricoin EF, Liotta LA.
J Theor Biol Early Edition: published 18-Apr-2008
Snake Venomics and Antivenomics of the Arboreal Neotropical Pitvipers Bothriechis lateralis and Bothriechis schlegelii
Bruno Lomonte, José Escolano, Julián Fernández, Libia Sanz, Yamileth Angulo, José María Gutiérrez, and Juan J. Calvete
JOURNAL OF PROTEOME RESEARCH (2008) 7(06): 2445-2457
A Proteomic Comparison of Immature and Mature Gonadotrophs in Mice Reveals Novel Differentially Expressed Nuclear Proteins That Regulate Gonadotropin Gene Transcription and RNA Splicing
Feng J, Lawson MA, Melamed P.
Biol Reprod Early Edition: published 14-May-2008
Structure and Dynamics of Photosystem II Light-Harvesting Complex Revealed by High-Resolution FTICR Mass Spectrometric Proteome Analysis
Galetskiy D, Susnea I, Reiser V, Adamska I, Przybylski M.
J Am Soc Mass Spectrom Early Edition: published 4-Apr-2008
Proteomic identification of novel proteins associated with Lewy bodies
Xia Q, Liao L, Cheng D, Duong DM, Gearing M, Lah JJ, Levey AI, Peng J.
Front Biosci (2008) 13: 3850-6.
Proteomic changes in rat hippocampus and adrenals following short-term sleep deprivation
Poirrier JE, Guillonneau F, Renaut J, Sergeant K, Luxen A, Maquet P, Leprince P.
Proteome Science (2008) 6(1): 14
NK Cell Protease Granzyme M Targets {alpha}-Tubulin and Disorganizes the Microtubule Network
Bovenschen N, de Koning PJ, Quadir R, Broekhuizen R, Damen JM, Froelich CJ, Slijper M, Kummer JA.
J Immunol (2008) 180(12): 8184-91
Clozapine causes oxidation of proteins involved in energy metabolism: a possible mechanism for antipsychotic-induced metabolic alterations
Walss-Bass C, Weintraub ST, Hatch J, Mintz J, Chaudhuri AR.
Int J Neuropsychopharmacol Early Edition: published 9-May-2008
Identification and distribution of thioredoxin-like 2 as the antigen for the monoclonal antibody MC3 specific to colorectal cancer
Yuanyuan Lu, Xin Wang, Zhenxiong Liu, Bin Jin, Dake Chu, Huihong Zhai, Faming Zhang, Kai Li, Gui Ren, Antonio Miranda-Vizuete, Xuegang Guo, Daiming Fan
PROTEOMICS (2008) 8(11): 2220-2229
Identification of differentially expressed proteins in the heart of translationally controlled tumor protein over-expressing transgenic mice
Cheon MS, Suh JK, Kim MJ, Kim SH, Lee K.
Biomed Chromatogr Early Edition: published 27-May-2008
Protein extraction for proteome analysis from cacao leaves and meristems, organs infected by Moniliophthora perniciosa, the causal agent of the witches' broom disease
Carlos Priminho Pirovani, Heliana Argôlo Santos Carvalho, Regina Cele Reboucas Machado, Dayane Santos Gomes, Fátima Cerqueira Alvim, Alan William Vilela Pomella, Karina Peres Gramacho, Júlio Cézar de Mattos Cascardo, Gonçalo Amarante Guimarães Pereira, Fabienne Micheli
ELECTROPHORESIS (2008) 29(11): 2391-2401
Identification of peptidases in Nicotiana tabacum leaf intercellular fluid
Mélanie Delannoy, Georges Alves, Didier Vertommen, Julian Ma, Marc Boutry, Catherine Navarre
PROTEOMICS (2008) 8(11): 2285-2298
Proteomic analysis of the chicken egg vitelline membrane
Karlheinz Mann
PROTEOMICS (2008) 8(11): 2322-2332
Global Protein-expression Analysis of Bone and Soft Tissue Sarcomas
Kawai A, Kondo T, Suehara Y, Kikuta K, Hirohashi S.
Clin Orthop Relat Res Early Edition: published 6-Jun-2008
Leishmania major: Identification of developmentally regulated proteins in procyclic and metacyclic promastigotes
Mojtahedi Z, Clos J, Kamali-Sarvestani E.
Exp Parasitol Early Edition: published 14-Apr-2008
Proteomics of neural stem cells
Skalnikova H, Vodicka P, Gadher SJ, Kovarova H
Expert Rev Proteomics (2008) 5(2): 175-86
Proteomic analysis of early germs with high-oil and normal inbred lines in maize
Liu Z, Yang X, Fu Y, Zhang Y, Yan J, Song T, Rocheford T, Li J.
Mol Biol Rep Early Edition: published 4-Jun-2008
Proteomic analysis of phospholipidosis in citalopram treated U937 cells - Support for the cholesterol biosynthesis hypothesis
Hutchinson TH, Mahshid Y, Jönsson R, Björklund C, Kenne K.
Toxicol In Vitro Early Edition: published 13-Apr-2008
A comparison of the synaptic proteome in human chronic schizophrenia and rat ketamine psychosis suggest that prohibitin is involved in the synaptic pathology of schizophrenia
Smalla KH, Mikhaylova M, Sahin J, Bernstein HG, Bogerts B, Schmitt A, van der Schors R, Smit AB, Li KW, Gundelfinger ED, Kreutz MR.
Mol Psychiatry Early Edition: published 27-May-2008
A mouse plasma PeptideAtlas as a resource for disease proteomics
Zhang Q, Menon R, Deutsch EW, Pitteri SJ, Faca VM, Wang H, Newcomb LF, Depinho RA, Bardeesy N, Dinulescu D, Hung KE, Kucherlapati R, Jacks T, Politi K, Aebersold R, Omenn GS, States DJ, Hanash SM.
Genome Biol (2008) 9(6): R93
Changes in the rat skeletal muscle proteome induced by moderate-intensity endurance exercise
Burniston JG.
Biochim Biophys Acta Early Edition: published 24-Apr-2008
Evaluation of differentially expressed proteins following serum exposure in avian pathogenic Escherichia coli
Tyler CD, Lichti CF, Diekman AB, Foley SL.
Avian Dis (2008) 52(1): 23-7
Identification of Protein Remains in Archaeological Potsherds by Proteomics
Caroline Solazzo, William W. Fitzhugh, Christian Rolando, and Caroline Tokarski
ANALYTICAL CHEMISTRY (2008) 80(12): 4590-4597
Time Series Proteome Profiling To Study Endoplasmic Reticulum Stress Response
Michelle Mintz, Adeline Vanderver, Kristy J. Brown, Joseph Lin, Zuyi Wang, Christine Kaneski, Raphael Schiffmann, Kanneboyina Nagaraju, Eric P. Hoffman, and Yetrib Hathout
JOURNAL OF PROTEOME RESEARCH (2008) 7(06): 2435-2444
Hippocampal metabolic proteins are modulated in voluntary and treadmill exercise rats
Kirchner L, Chen WQ, Afjehi-Sadat L, Viidik A, Skalicky M, Höger H, Lubec G.
Exp Neurol (2008) 212(1): 145-51
Gene expression changes in a transgenic mouse model overexpressing human wildtype and mutant torsinA
Kathrin Grundmann, Jeannette Hübener, Karina Häbig, Bettina Reischmann, Sven Poths, Till-Karsten Hauser, Janine Magg, Olaf Riess, Michael Bonin, Huu Phuc Nguyen
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(5): 720-736
Identification of Guanylate Cyclases and Related Signaling Proteins in Sperm Tail from Sea Stars by Mass Spectrometry
Nakachi M, Matsumoto M, Terry PM, Cerny RL, Moriyama H.
Mar Biotechnol (NY) Early Edition: published 7-May-2008
Clinical Proteomics in Application to Predictive Diagnostics and Personalized Treatment of Diabetic Patients
Golubnitschaja, Olga
Current Proteomics (2008) 5(1): 35-44
Proteomic analysis of autocrine/paracrine effects of human growth hormone in human mammary carcinoma cells
Vouyovitch CM, Vidal L, Borges S, Raccurt M, Arnould C, Chiesa J, Lobie PE, Lachuer J, Mertani HC.
Adv Exp Med Biol (2008) 617: 493-500
Psychiatric research: psychoproteomics, degradomics and systems biology
Kobeissy FH, Sadasivan S, Liu J, Gold MS, Wang KK
Expert Rev Proteomics (2008) 5(2): 293-314
Expression profiling of the cerebral ischemic and hypoxic response
Van Elzen R, Moens L, Dewilde S
Expert Rev Proteomics (2008) 5(2): 263-82
Subproteomic analysis of the mitochondrial proteins in rats 24 h after partial hepatectomy
Sun Q, Miao M, Jia X, Guo W, Wang L, Yao Z, Liu C, Jiao B.
J Cell Biochem Early Edition: published 3-Jun-2008
Performance characteristics of an FT MS-based workflow for label-free differential MS analysis of human plasma: standards, reproducibility, targeted feature investigation, and application to a model of controlled myocardial infarction
Jennifer Sutton, Tori Richmond, Xu Shi, Michael Athanas, Celeste Ptak, Robert Gerszten, Leo Bonilla
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(6): 862-881
Proteomic Evaluation of Urine from Renal Cell Carcinoma Using SELDI-TOF-MS and Tree Analysis Pattern
Wu DL, Zhang WH, Wang WJ, Jing SB, Xu YM.
Technol Cancer Res Treat (2008) 7(3): 155-60
The Use of Proteomics to Study Infectious Diseases
List EO, Berryman DE, Bower B, Sackmann-Sala L, Gosney E, Ding J, Okada S, Kopchick JJ.
Infect Disord Drug Targets (2008) 8(1): 31-45
Hepatocystin Is Not Secreted in Cyst Fluid of Hepatocystin Mutant Polycystic Liver Patients
Esmé Waanders, Anke L. L. Lameris, Huub J. M. Op den Camp, Wendy Pluk, Jolein Gloerich, Simon P. Strijk, and Joost P. H. Drenth
JOURNAL OF PROTEOME RESEARCH (2008) 7(06): 2490-2495
Identification of apolipoprotein C-III as a potential plasmatic biomarker associated with the resolution of hepatitis C virus infection
Sonia Molina, Dorothée Missé, Stéphane Roche, Stéphanie Badiou, Jean-Paul Cristol, Claude Bonfils, Jean-François Dierick, Francisco Veas, Thierry Levayer, Dominique Bonnefont-Rousselot, Patrick Maurel, Joliette Coste, Chantal Fournier-Wirth
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(5): 751-761
Differential protein expression in the corpus callosum (genu) of human alcoholics
Kashem MA, Harper C, Matsumoto I.
Neurochem Int Early Edition: published 20-Apr-2008
Protein biomarkers for amyotrophic lateral sclerosis
Ryberg H, Bowser R
Expert Rev Proteomics (2008) 5(2): 249-62
Matching of oligoclonal immunoglobulin transcriptomes and proteomes of cerebrospinal fluid in multiple sclerosis
Obermeier B, Mentele R, Malotka J, Kellermann J, Kümpfel T, Wekerle H, Lottspeich F, Hohlfeld R, Dornmair K.
Nat Med Early Edition: published 18-May-2008
Human tumor nanoparticles induce apoptosis of pancreatic cancer cells
Ristorcelli E, Beraud E, Verrando P, Villard C, Lafitte D, Sbarra V, Lombardo D, Verine A.
FASEB J Early Edition: published 29-May-2008
Diagnostic and prognostic needs in neurodegenerative disorders: focus on proteomics
Bibl M, Wiltfang J
Expert Rev Proteomics (2008) 5(2): 153-6
Redox proteomics studies of in vivo amyloid beta-peptide animal models of Alzheimer's disease: Insight into the role of oxidative stress
Rukhsana Sultana, D. Allan Butterfield
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(5): 685-696
Proteomic investigation of taxol and taxotere resistance and invasiveness in a squamous lung carcinoma cell line
Murphy L, Clynes M, Keenan J.
Biochim Biophys Acta Early Edition: published 1-May-2008
Proteome Analysis of Cerebrospinal Fluid in Amyotrophic Lateral Sclerosis (ALS)
Brettschneider J, Mogel H, Lehmensiek V, Ahlert T, Süssmuth S, Ludolph AC, Tumani H.
Neurochem Res Early Edition: published 15-May-2008
Proteomic alteration in lung tissue of rats exposed to cigarette smoke
Zhang S, Xu N, Nie J, Dong L, Li J, Tong J.
Toxicol Lett (2008) 178(3): 191-6
Proteomic and transcriptomic analysis for streptozotocin-induced diabetic rat pancreas in response to fungal polysaccharide treatments
Sang Woo Kim, Hye Jin Hwang, Yu Mi Baek, Sung Hak Lee, Hee Sun Hwang, Jong Won Yun
PROTEOMICS (2008) 8(11): 2344-2361
Senescence marker protein 30 in acute liver failure: validation of a mass spectrometry proteomics assay
Lv S, Wang JH, Liu F, Gao Y, Fei R, Du SC, Wei L.
BMC Gastroenterol (2008) 8(1): 17
A comparison of the synaptic proteome in human chronic schizophrenia and rat ketamine psychosis suggest that prohibitin is involved in the synaptic pathology of schizophrenia
Smalla KH, Mikhaylova M, Sahin J, Bernstein HG, Bogerts B, Schmitt A, van der Schors R, Smit AB, Li KW, Gundelfinger ED, Kreutz MR.
Mol Psychiatry Early Edition: published 27-May-2008
Proteomics for prediction and characterization of response to infliximab in Crohn's disease: A pilot study
Meuwis MA, Fillet M, Lutteri L, Marée R, Geurts P, de Seny D, Malaise M, Chapelle JP, Wehenkel L, Belaiche J, Merville MP, Louis E.
Clin Biochem Early Edition: published 6-May-2008
Probing mechanisms of axonopathy. Part I: Protein targets of 1,2-diacetylbenzene, the neurotoxic metabolite of aromatic solvent 1,2-diethylbenzene
Desire TK, Victor M, Robert K, Michael L, Mohammad S, Peter S.
Toxicol Sci Early Edition: published 22-May-2008
A comparative study on proteomics between LNCap and DU145 cells by quantitative detection and SELDI analysis
Sun W, Ye Z, Mi Z, Shi T, Han C, Guo S.
J Huazhong Univ Sci Technolog Med Sci (2008) 28(2): 174-8
Proteomic analysis of differential proteins related to the neuropathic pain and neuroprotection in the dorsal root ganglion following its chronic compression in rats
Zhang Y, Wang YH, Zhang XH, Ge HY, Arendt-Nielsen L, Shao JM, Yue SW.
Exp Brain Res Early Edition: published 21-May-2008
Protein expression overlap: more important than which proteins change in expression?
Zabel C, Andreew A, Mao L, Hartl D
Expert Rev Proteomics (2008) 5(2): 187-205
Characterization of the Vitreous Proteome in Diabetes without Diabetic Retinopathy and Diabetes with Proliferative Diabetic Retinopathy
Ben-Bo Gao, Xiaohong Chen, Nigel Timothy, Lloyd Paul Aiello, and Edward P. Feener
JOURNAL OF PROTEOME RESEARCH (2008) 7(06): 2516-2525
Proteomics- and Transcriptomics-Based Screening of Differentially Expressed Proteins and Genes in Brain of Wig Rat: A Model for Attention Deficit Hyperactivity Disorder (ADHD) Research
Misato Hirano, Randeep Rakwal, Junko Shibato, Hirofumi Sawa, Kazuo Nagashima, Yoko Ogawa, Yasukazu Yoshida, Hitoshi Iwahashi, Etsuo Niki, and Yoshinori Masuo
JOURNAL OF PROTEOME RESEARCH (2008) 7(06): 2471-2489
Analysis of changes in the proteome of HL-60 promyeloid leukemia cells induced by the proteasome inhibitor PSI
Choi MR, Najafi F, Safa AR, Drexler HC.
Biochem Pharmacol (2008) 75(12): 2276-88
Direct tissue proteomics in human diseases: potential applications to melanoma research
Rezaul K, Wilson LL, Han DK
Expert Rev Proteomics (2008) 5(3): 405-12
Fetal Heart Rate Monitoring Patterns in Women with Amniotic Fluid Proteomic Profiles Indicative of Inflammation
Buhimschi CS, Abdel-Razeq S, Cackovic M, Pettker CM, Dulay AT, Bahtiyar MO, Zambrano E, Martin R, Norwitz ER, Bhandari V, Buhimschi IA.
Am J Perinatol Early Edition: published 29-May-2008
Proteomic techniques identify urine proteins that differentiate patients with interstitial cystitis from asymptomatic control subjects
Canter MP, Graham CA, Heit MH, Blackwell LS, Wilkey DW, Klein JB, Merchant ML.
Am J Obstet Gynecol (2008) 198(5): 553.e1-6
Breast tumor metastasis: analysis via proteomic profiling
Goodison S, Urquidi V
Expert Rev Proteomics (2008) 5(3): 457-67
The early detection of ovarian cancer: from traditional methods to proteomics. Can we really do better than serum CA-125?
Nossov V, Amneus M, Su F, Lang J, Janco JM, Reddy ST, Farias-Eisner R.
Am J Obstet Gynecol Early Edition: published 9-May-2008
SELDI-TOF proteomic profiling of breast carcinomas identifies clinicopathologically relevant groups of patients similar to previously defined clusters from cDNA expression
Brozkova K, Budinska E, Bouchal P, Hernychova L, Knoflickova D, Valik D, Vyzula R, Vojtesek B, Nenutil R.
Breast Cancer Res (2008) 10(3): R48
Urinary aprotinin as a predictor of acute kidney injury after cardiac surgery in children receiving aprotinin therapy
Nguyen MT, Dent CL, Ross GF, Harris N, Manning PB, Mitsnefes MM, Devarajan P.
Pediatr Nephrol Early Edition: published 28-May-2008
Identification of proteins in human substantia nigra
Efstathia Kitsou, Sheng Pan, JianPeng Zhang, Min Shi, Aram Zabeti, Dennis W. Dickson, Roger Albin, Marla Gearing, Daniel T. Kashima, Yan Wang, Richard P. Beyer, Yong Zhou, Catherine Pan, W. Michael Caudle, Jing Zhang
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(5): 776-782
Glycomic Analysis of Alpha-Fetoprotein L3 in Hepatoma Cell Lines and Hepatocellular Carcinoma Patients
Takatoshi Nakagawa, Eiji Miyoshi, Takayuki Yakushijin, Naoki Hiramatsu, Takumi Igura, Norio Hayashi, Naoyuki Taniguchi, and Akihiro Kondo
JOURNAL OF PROTEOME RESEARCH (2008) 7(06): 2222-2233
Immunoproteomic identification of the hypothetical protein NMB1468 as a novel lipoprotein ubiquitous in Neisseria meningitidis with vaccine potential
Chi-An Hsu, Wei-Ru Lin, Jung-Chen Li, Yi-Lung Liu, Yen-Tzu Tseng, Chun-Mien Chang, Yeong-Sheng Lee, Chiou-Ying Yang
PROTEOMICS (2008) 8(10): 2115-2125
Proteomic analysis of human articular cartilage: Identification of differentially expressed proteins in knee osteoarthritis
Guo D, Tan W, Wang F, Lv Z, Hu J, Lv T, Chen Q, Gu X, Wan B, Zhang Z.
Joint Bone Spine Early Edition: published 10-May-2008
Amyotrophic lateral sclerosis: Protein chaperone dysfunction revealed by proteomic studies of animal models
Mohit Raja Jain, Wei-wen Ge, Stella Elkabes, Hong Li
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(5): 670-684
Targeted proteomics in Alzheimer's disease: focus on amyloid-beta
Portelius E, Zetterberg H, Gobom J, Andreasson U, Blennow K
Expert Rev Proteomics (2008) 5(2): 225-37
Analysis of the interaction of influenza virus polymerase complex with human cell factors
Núria Jorba, Silvia Juarez, Eva Torreira, Pablo Gastaminza, Noelia Zamarreño, Juan Pablo Albar, Juan Ortín
PROTEOMICS (2008) 8(10): 2077-2088
Development of proteomic signatures of platelet activation using surface-enhanced laser desorption/ionization technology in a clinical setting
Yin W, Czuchlewski D, Peerschke EI.
Am J Clin Pathol (2008) 129(6): 862-9
Proteomic Data Analysis Workflow for Discovery of Candidate Biomarker Peaks Predictive of Clinical Outcome for Patients with Acute Myeloid Leukemia
Jenny Forshed, Maria Pernemalm, Chuen Seng Tan, Marita Lindberg, Lena Kanter, Yudi Pawitan, Rolf Lewensohn, Leif Stenke, and Janne Lehtiö
JOURNAL OF PROTEOME RESEARCH (2008) 7(06): 2332-2341
Alterations in the proteome of pulmonary alveolar type II cells in the rat after hepatic ischemia-reperfusion
Hirsch J, Niemann CU, Hansen KC, Choi S, Su X, Frank JA, Fang X, Hirose R, Theodore P, Sapru A, Burlingame AL, Matthay MA.
Crit Care Med Early Edition: published 19-May-2008
Identificating Cathepsin D as a Biomarker for Differentiation and Prognosis of Nasopharyngeal Carcinoma by Laser Capture Microdissection and Proteomic Analysis
Ai-Lan Cheng, Wei-Guo Huang, Zhu-Chu Chen, Peng-Fei Zhang, Mao-Yu Li, Feng Li, Jian-Ling Li, Cui Li, Hong Yi, Fang Peng, Chao-Jun Duan, and Zhi-Qiang Xiao
JOURNAL OF PROTEOME RESEARCH (2008) 7(06): 2415-2426
Haptoglobin-beta chain defined by monoclonal antibody RM2 as a novel serum marker for prostate cancer
Saito S, Murayama Y, Pan Y, Taima T, Fujimura T, Murayama K, Sadilek M, Egawa S, Ueno S, Ito A, Ishidoya S, Nakagawa H, Kato M, Satoh M, Endoh M, Arai Y.
Int J Cancer (2008) 123(3): 633-40
Upregulation of Copine1 in trabecular meshwork cells of POAG patients: a membrane proteomics approach
Zhang Y, Gao Q, Duan S, He Y, Sun X, Jiang R, Duan Y, Zhong X, Ge J.
Mol Vis (2008) 14: 1028-36.
Optimizing protein recovery for urinary proteomics, a tool to monitor renal transplantation
Sigdel TK, Lau K, Schilling J, Sarwal M.
Clin Transplant Early Edition: published 3-May-2008
Protein composition of human epididymosomes collected during surgical vasectomy reversal: aproteomic and genomic approach
Thimon V, Frenette G, Saez F, Thabet M, Sullivan R.
Hum Reprod Early Edition: published 14-May-2008
Protein profiling of formalin fixed paraffin embedded tissue: Identification of potential biomarkers for pediatric brainstem glioma
Javad Nazarian, Mariarita Santi, Yetrib Hathout, Tobey J. MacDonald
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(6): 915-924
Proteomics in atherosclerosis
Martinez-Pinna R, Martin-Ventura JL, Mas S, Blanco-Colio LM, Tuñon J, Egido J.
Curr Atheroscler Rep (2008) 10(3): 209-15
Decreased Urinary Beta Defensin-1 Expression as a Biomarker of Response to Arsenic
Hegedus CM, Skibola CF, Warner M, Skibola DR, Alexander D, Lim S, Dangleben N, Zhang L, Clark M, Pfeiffer RM, Steinmaus C, Smith AH, Smith MT, Moore LE.
Toxicol Sci Early Edition: published 28-May-2008
The Effect of Trophoblasts on T Lymphocytes: Possible Regulatory Effector Molecules - A Proteomic Analysis
Dong M, Ding G, Zhou J, Wang H, Zhao Y, Huang H.
Cell Physiol Biochem (2008) 21(5-6): 463-472
Altered Proteome Biology of Cardiac Mitochondria Under Stress Conditions
Jun Zhang, David A. Liem, Michael Mueller, Yueju Wang, Chenggong Zong, Ning Deng, Thomas M. Vondriska, Paavo Korge, Oliver Drews, W. Robb MacLellan, Henry Honda, James N. Weiss, Rolf Apweiler, and Peipei Ping
JOURNAL OF PROTEOME RESEARCH (2008) 7(06): 2204-2214
Comparative proteomic analysis of mouse livers from embryo to adult reveals an association with progression of hepatocellular carcinoma
Nikki P. Y. Lee, Kar-wai Leung, Nicole Cheung, Brian Y. Lam, Michelle Z. Xu, Pak C. Sham, George K. Lau, Ronnie T. P. Poon, Sheung Tat Fan, John M. Luk
PROTEOMICS (2008) 8(10): 2136-2149
Heavy marijuana users show increased serum apolipoprotein C-III levels: evidence from proteomic analyses
Jayanthi S, Buie S, Moore S, Herning RI, Better W, Wilson NM, Contoreggi C, Cadet JL.
Mol Psychiatry Early Edition: published 13-May-2008
Identification of potential serum biomarkers of inflammation and lipid modulation that are altered by fish oil supplementation in healthy volunteers
Baukje de Roos, Anouk Geelen, Karen Ross, Garry Rucklidge, Martin Reid, Gary Duncan, Muriel Caslake, Graham Horgan, Ingeborg A. Brouwer
PROTEOMICS (2008) 8(10): 1965-1974
Mining the oncoproteome and studying molecular interactions for biomarker development by 2DE, ChIP and SPR technologies
Ahmed FE
Expert Rev Proteomics (2008) 5(3): 469-96
Proteomic analysis of traumatic brain injury: the search for biomarkers
Prieto DA, Ye X, Veenstra TD
Expert Rev Proteomics (2008) 5(2): 283-91
Analysis of human serum from women affected by cervical lesions
Barba de la Rosa AP, Lugo-Melchor OY, Briones-Cerecero EP, Chagolla-López A, De León-RodrÃguez A, Santos L, Vázquez-Ortiz G, Salcedo M.
J Exp Ther Oncol (2008) 7(1): 65-72
Proteomic analysis of a rat model of depression
Mu J, Yang ZS, Xie P
Expert Rev Proteomics (2008) 5(2): 315-20
Aorta protein networks in marginal and acute zinc deficiency
John H. Beattie, Margaret-Jane Gordon, Garry J. Rucklidge, Martin D. Reid, Gary J. Duncan, Graham W. Horgan, Young-Eun Cho, In-Sook Kwun
PROTEOMICS (2008) 8(10): 2126-2135
Proteomic Based Identification of Manganese Superoxide Dismutase 2 (SOD2) as a Metastasis Marker for Oral Squamous Cell Carcinoma
Ye H, Wang A, Lee BS, Yu T, Sheng S, Peng T, Hu S, Crowe DL, Zhou X.
Cancer Genomics Proteomics (2008) 5(2): 85-94
Comparative Proteomic Analysis of Non-small-cell Lung Cancer and Normal Controls Using Serum Label-Free Quantitative Shotgun Technology
Pan J, Chen HQ, Sun YH, Zhang JH, Luo XY.
Lung Early Edition: published 9-May-2008
Alpha-synuclein and Parkinson's disease: a proteomic view
Fasano M, Lopiano L
Expert Rev Proteomics (2008) 5(2): 239-48
Proteomic map of peripheral blood mononuclear cells
Daniele Vergara, Fernanda Chiriacò, Raffaele Acierno, Michele Maffia
PROTEOMICS (2008) 8(10): 2045-2051
Alcoholism: protein expression profiles in a human hippocampal model
Matsumoto H, Matsumoto I
Expert Rev Proteomics (2008) 5(2): 321-31
Pharmacoproteomics of a metalloproteinase hydroxamate inhibitor in breast cancer cells: Dynamics of matrix metalloproteinase-14 (MT1-MMP) mediated membrane protein shedding
Butler GS, Dean RA, Tam EM, Overall CM.
Mol Cell Biol Early Edition: published 27-May-2008
Proteomic analysis permits the identification of new biomarkers of arterial wall remodeling in hypertension
Delbosc S, Haloui M, Louedec L, Dupuis M, Cubizolles M, Podust VN, Fung ET, Michel JB, Meilhac O.
Mol Med Early Edition: published 22-May-2008
Distinct cardiogenic preferences of two human embryonic stem cell (hESC) lines are imprinted in their proteomes in the pluripotent state
Moore JC, Fu J, Chan YC, Lin D, Tran H, Tse HF, Li RA.
Biochem Biophys Res Commun Early Edition: published 23-May-2008
A Liquid Chromatography−Quadrupole Time-of-Flight (LC−QTOF)-based Metabolomic Approach Reveals New Metabolic Effects of Catechin in Rats Fed High-Fat Diets
Anthony Fardet, Rafael Llorach, Jean-François Martin, Catherine Besson, Bernard Lyan, Estelle Pujos-Guillot, and Augustin Scalbert
JOURNAL OF PROTEOME RESEARCH (2008) 7(06): 2388-2398
Neuroproteomics as a promising tool in Parkinson's disease research
Pienaar IS, Daniels WM, Götz J.
J Neural Transm Early Edition: published 4-Jun-2008
Proteomic analysis of cellular protein alterations using a hepatitis B virus-producing cellular model
Aiping Tong, Lihong Wu, Qingsong Lin, Quek Choon Lau, Xia Zhao, Jiong Li, Ping Chen, Lijuan Chen, Hong Tang, Canhua Huang, Yu-quan Wei
PROTEOMICS (2008) 8(10): 2012-2023
Proteomic and Metabolomic Analyses of the White-Rot Fungus Phanerochaete chrysosporium Exposed to Exogenous Benzoic Acid
Fumiko Matsuzaki, Motoyuki Shimizu, and Hiroyuki Wariishi
JOURNAL OF PROTEOME RESEARCH (2008) 7(06): 2342-2350
Proteomic analysis of early germs with high-oil and normal inbred lines in maize
Liu Z, Yang X, Fu Y, Zhang Y, Yan J, Song T, Rocheford T, Li J.
Mol Biol Rep Early Edition: published 4-Jun-2008
Leishmania major: Identification of developmentally regulated proteins in procyclic and metacyclic promastigotes
Mojtahedi Z, Clos J, Kamali-Sarvestani E.
Exp Parasitol Early Edition: published 14-Apr-2008
Proteomic Analysis of Trypanosoma cruzi Resistance to Benznidazole
Hélida M. Andrade, Silvane M. F. Murta, Alex Chapeaurouge, Jonas Perales, Phillipe Nirdé, and Alvaro J. Romanha
JOURNAL OF PROTEOME RESEARCH (2008) 7(06): 2357-2367
Applications of proteomics to the study of adipose tissue
Hess S, Chen X.
Methods Mol Biol (2008) 456: 131-40
Phosphoproteome analysis of the human Chang liver cells using SCX and a complementary mass spectrometric strategy
Shaohui Sui, Jinglan Wang, Bing Yang, Lina Song, Jiyang Zhang, Ming Chen, Jinfeng Liu, Zhuang Lu, Yun Cai, Shuo Chen, Wei Bi, Yunping Zhu, Fuchu He, Xiaohong Qian
PROTEOMICS (2008) 8(10): 2024-2034
Second Prize: Comprehensive Proteomic Analysis of Human Calcium Oxalate Monohydrate Kidney Stone Matrix
Canales BK, Anderson L, Higgins L, Slaton J, Roberts KP, Liu N, Monga M.
J Endourol Early Edition: published 16-May-2008
Proteomic Methodological Recommendations for Studies Involving Human Plasma, Platelets, and Peripheral Blood Mononuclear Cells
Baukje de Roos, Susan J. Duthie, Abigael C. J. Polley, Francis Mulholland, Freek G. Bouwman, Carolin Heim, Garry J. Rucklidge, Ian T. Johnson, Edwin C. Mariman, Hannelore Daniel, and Ruan M. Elliott
JOURNAL OF PROTEOME RESEARCH (2008) 7(06): 2280-2290
Site-Specific Phosphorylation Profiling of Arabidopsis Proteins by Mass Spectrometry and Peptide Chip Analysis
Sergio de la Fuente van Bentem, Dorothea Anrather, Ilse Dohnal, Elisabeth Roitinger, Edina Csaszar, Jos Joore, Joshua Buijnink, Alessandro Carreri, Celine Forzani, Zdravko J. Lorkovic, Andrea Barta, David Lecourieux, Andreas Verhounig, Claudia Jonak, and Heribert Hirt
JOURNAL OF PROTEOME RESEARCH (2008) 7(06): 2458-2470
MALDI-MS Monitoring of Differential Biomolecule Secretion from Human Lung Cells in Vitro Following Incubation with <150 Particles
Allen E. Haddrell, Stephen van Eeden, and George R. Agnes
JOURNAL OF PROTEOME RESEARCH (2008) 7(06): 2539-2545
Large-scale identification by shotgun proteomics of proteins expressed in porcine liver and salivary gland
Tsujita T, Kang D, Moon MH, Ohno N, Inoue T, Matsumoto M, Kaji Y, Yamaguchi Y.
Zoolog Sci (2008) 25(2): 129-38
Facts and artifacts in proteomics of body fluids. What proteomics of saliva is telling us?
Messana I, Inzitari R, Fanali C, Cabras T, Castagnola M.
J Sep Sci Early Edition: published 19-May-2008
Next issue: Mitochondria and ageing
[No authors listed]
Biotechnol J (2008) 3(5): 698
Hepatocystin Is Not Secreted in Cyst Fluid of Hepatocystin Mutant Polycystic Liver Patients
Esmé Waanders, Anke L. L. Lameris, Huub J. M. Op den Camp, Wendy Pluk, Jolein Gloerich, Simon P. Strijk, and Joost P. H. Drenth
JOURNAL OF PROTEOME RESEARCH (2008) 7(06): 2490-2495
A Framework for the Automated Analysis of Subcellular Patterns in Human Protein Atlas Images
Justin Newberg and Robert F. Murphy
JOURNAL OF PROTEOME RESEARCH (2008) 7(06): 2300-2308
Application of proteomics to hematology: the revolution is starting
Lion N, Tissot JD
Expert Rev Proteomics (2008) 5(3): 375-9
A proteomic approach to the identification of the major virion structural proteins of the marine cyanomyovirus S-PM2
Clokie MR, Thalassinos K, Boulanger P, Slade SE, Stoilova-McPhie S, Cane M, Scrivens JH, Mann NH.
Microbiology (2008) 154(Pt 6): 1775-82
Protein profiling of the dimorphic, pathogenic fungus, Penicillium marneffei
Chandler JM, Treece ER, Trenary HR, Brenneman JL, Flickner TJ, Frommelt JL, Oo ZM, Patterson MM, Rundle WT, Valle OV, Kim TD, Walker GR, Cooper CR Jr.
Proteome Science (2008) 6(1): 17
Proteomic Analysis of Nalidixic Acid Resistance in Escherichia coli: Identification and Functional Characterization of OM Proteins
Xiang-min Lin, Hui Li, Chao Wang, and Xuan-xian Peng
JOURNAL OF PROTEOME RESEARCH (2008) 7(06): 2399-2405
Proteomic Analysis of and Immune Responses to Ehrlichia chaffeensis Lipoproteins
Huang H, Lin M, Wang X, Kikuchi T, Mottaz H, Norbeck A, Rikihisa Y.
Infect Immun Early Edition: published 19-May-2008
Proteomic Analysis of Stationary Phase in the Marine Bacterium Candidatus Pelagibacter ubique
Sowell SM, Norbeck AD, Lipton MS, Nicora CD, Callister SJ, Smith RD, Barofsky DF, Giovannoni SJ.
Appl Environ Microbiol Early Edition: published 9-May-2008
Ralstonia eutropha H16 changes flagellation according to nutrient supply and state of poly(3-hydroxybutyrate) accumulation
Raberg M, Reinecke F, Reichelt R, Malkus U, König S, Pötter M, Fricke WF, Pohlmann A, Voigt B, Hecker M, Friedrich B, Bowien B, Steinbüchel A.
Appl Environ Microbiol Early Edition: published 23-May-2008
Identification and Characterization of Sulfolobus solfataricus P2 Proteome Using Multidimensional Liquid Phase Protein Separations
Bobby F. Assiddiq, Ambrosius P. L. Snijders, Poh Kuan Chong, Phillip C. Wright, and Mark. J. Dickman
JOURNAL OF PROTEOME RESEARCH (2008) 7(06): 2253-2261
A systematic approach to identify STRE-binding proteins of the gsn glycogen synthase gene promoter in Neurospora crassa
Fernanda Zanolli Freitas, Alex Chapeaurouge, Jonas Perales, Maria Célia Bertolini
PROTEOMICS (2008) 8(10): 2052-2061
Comparison of the extracellular proteomes of Escherichia coli B and K-12 strains during high cell density cultivation
Xiao-Xia Xia, Mee-Jung Han, Sang Yup Lee, Jong-Shin Yoo
PROTEOMICS (2008) 8(10): 2089-2103
Proteomics of stress response in Bifidobacterium
Sanchez B, Ruiz L, Reyes-Gavilan CG, Margolles A.
Front Biosci (2008) 13: 6905-19.
Proteomic and molecular investigation on the physiological adaptation of Comamonas sp. strain CNB-1 growing on 4-chloronitrobenzene
Zhang Y, Wu JF, Zeyer J, Meng B, Liu L, Jiang CY, Liu SQ, Liu SJ.
Biodegradation Early Edition: published 29-May-2008
Analysis of outer membrane vesicle associated proteins isolated from the plant pathogenic bacterium Xanthomonas campestris pv. campestris
Sidhu VK, Vorhoelter FJ, Niehaus K, Watt SA.
BMC Microbiol (2008) 8(1): 87
Quantitative analysis of Streptococcus pneumoniae TIGR4 response to in vitro iron restriction by 2-D LC ESI MS/MS
Bindu Nanduri, Pratik Shah, Mahalingam Ramkumar, Edward B. Allen, Edwin Swiatlo, Shane C. Burgess, Mark L. Lawrence
PROTEOMICS (2008) 8(10): 2104-2114
Monitoring of changes in the membrane proteome during stationary phase adaptation of Bacillus subtilis using in vivo labeling techniques
Annette Dreisbach, Andreas Otto, Dörte Becher, Elke Hammer, Alexander Teumer, Joost W. Gouw, Michael Hecker, Uwe Völker
PROTEOMICS (2008) 8(10): 2062-2076
Bacillus anthracis Spores Influence ATP Synthase Activity in Murine Macrophages
Seo GM, Jung KH, Kim SJ, Kim JC, Yoon JW, Oh KK, Lee JH, Chai YG.
J Microbiol Biotechnol (2008) 18(4): 778-83
Post-Translational Modifications of Desulfovibrio vulgaris Hildenborough Sulfate Reduction Pathway Proteins
Sara P. Gaucher, Alyssa M. Redding, Aindrila Mukhopadhyay, Jay D. Keasling, and Anup K. Singh
JOURNAL OF PROTEOME RESEARCH (2008) 7(06): 2320-2331
Proteomic Identification of the Cus System as a Major Determinant of Constitutive Escherichia coli Silver Resistance of Chromosomal Origin
Chun-Nam Lok, Chi-Ming Ho, Rong Chen, Paul Kwong-Hang Tam, Jen-Fu Chiu, and Chi-Ming Che
JOURNAL OF PROTEOME RESEARCH (2008) 7(06): 2351-2356
Acid adaptation of Lactobacillus delbrueckii subsp. bulgaricus induces physiological responses at membrane and cytosolic levels that improves cryotolerance
Streit F, Delettre J, Corrieu G, Béal C.
J Appl Microbiol Early Edition: published 21-May-2008
Decreased Urinary Beta Defensin-1 Expression as a Biomarker of Response to Arsenic
Hegedus CM, Skibola CF, Warner M, Skibola DR, Alexander D, Lim S, Dangleben N, Zhang L, Clark M, Pfeiffer RM, Steinmaus C, Smith AH, Smith MT, Moore LE.
Toxicol Sci Early Edition: published 28-May-2008
Ecstasy produces left ventricular dysfunction and oxidative stress in rats
Shenouda SK, Lord KC, McIlwain E, Lucchesi PA, Varner KJ.
Cardiovasc Res Early Edition: published 20-May-2008
Comparison of two anoxia models in rainbow trout cells by a 2-DE and MS/MS-based proteome approach
Tune Wulff, Else K. Hoffmann, Peter Roepstorff, Flemming Jessen
PROTEOMICS (2008) 8(10): 2035-2044
Proteomic analysis of MCF-7 cells treated with benzo[a]pyrene, dibenzo[a,l]pyrene, coal tar extract, and diesel exhaust extract
Hooven LA, Baird WM.
Toxicology Early Edition: published 30-Mar-2008
Zinc adaptation and resistance to cadmium toxicity in mammalian cells: Molecular insight by proteomic analysis
Estelle Rousselet, Alain Martelli, Mireille Chevallet, Hélène Diemer, Alain Van Dorsselaer, Thierry Rabilloud, Jean-Marc Moulis
PROTEOMICS (2008) 8(11): 2244-2255
Cetuximab inhibits thymidylate synthase in colorectal cells expressing epidermal growth factor receptor
Sergej Skvortsov, Bettina Sarg, Herbert Lindner, Peter Lukas, Wolfgang Hilbe, Heinz Zwierzina, Ira Skvortsova
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(6): 908-914
Proteomic analysis in the lichen Physcia adscendens exposed to cadmium stress
Rustichelli C, Visioli G, Kostecka D, Vurro E, Sanità di Toppi L, Marmiroli N.
Environ Pollut Early Edition: published 29-May-2008
Global quantitative analysis of protein phosphorylation status in fish exposed to microcystin
Mezhoud K, Praseuth D, Francois JC, Bernard C, Edery M.
Adv Exp Med Biol (2008) 617: 419-26
Effects of Subminimum Inhibitory Concentrations of Antibiotics on the Pasteurella multocida Proteome: A Systems Approach
Nanduri B, Lawrence ML, Peddinti DS, Burgess SC.
Comp Funct Genomics (2008) : 254836.
Troglitazone-induced hepatic mitochondrial proteome expression dynamics in heterozygous Sod2(+/-) mice: Two-stage oxidative injury
Lee YH, Chung MC, Lin Q, Boelsterli UA.
Toxicol Appl Pharmacol Early Edition: published 12-Apr-2008
Pharmacoproteomics of a metalloproteinase hydroxamate inhibitor in breast cancer cells: Dynamics of matrix metalloproteinase-14 (MT1-MMP) mediated membrane protein shedding
Butler GS, Dean RA, Tam EM, Overall CM.
Mol Cell Biol Early Edition: published 27-May-2008
Chronic wound state exacerbated by oxidative stress in Pax6(+/-) aniridia-related keratopathy
Ou J, Walczysko P, Kucerova R, Rajnicek A, McCaig C, Zhao M, Collinson J.
J Pathol Early Edition: published 17-Apr-2008
Disparate proteome reactivity profiles of carbon electrophiles
Weerapana E, Simon GM, Cravatt BF.
Nat Chem Biol Early Edition: published 18-May-2008
Identification of novel substrates for Cdk5 and new targets for Cdk5 inhibitors using high-density protein microarrays
Cathrin Schnack, Bastian Hengerer, Frank Gillardon
PROTEOMICS (2008) 8(10): 1980-1986
Immobilization strategies for single-chain antibody microarrays
Shannon L. Seurynck-Servoss, Cheryl L. Baird, Keith D. Miller, Noah B. Pefaur, Rachel M. Gonzalez, David O. Apiyo, Heather E. Engelmann, Sudhir Srivastava, Jacob Kagan, Karin D. Rodland, Richard C. Zangar
PROTEOMICS (2008) 8(11): 2199-2210
Development and Validation of Sandwich ELISA Microarrays with Minimal Assay Interference
Rachel M. Gonzalez, Shannon L. Seurynck-Servoss, Sheila A. Crowley, Marty Brown, Gilbert S. Omenn, Daniel F. Hayes, and Richard C. Zangar
JOURNAL OF PROTEOME RESEARCH (2008) 7(06): 2406-2414
Detection of pancreatic cancer using antibody microarray-based serum protein profiling
Johan Ingvarsson, Christer Wingren, Anders Carlsson, Peter Ellmark, Britta Wahren, Gunnel Engström, Ulrika Harmenberg, Morten Krogh, Carsten Peterson, Carl A. K. Borrebaeck
PROTEOMICS (2008) 8(11): 2211-2219
SELDI-TOF proteomic profiling of breast carcinomas identifies clinicopathologically relevant groups of patients similar to previously defined clusters from cDNA expression
Brozkova K, Budinska E, Bouchal P, Hernychova L, Knoflickova D, Valik D, Vyzula R, Vojtesek B, Nenutil R.
Breast Cancer Res (2008) 10(3): R48
Analysis of urinary proteomic patterns for diabetic nephropathy by ProteinChip
Wei Gu, Li-Xia Zou, Peng-Fei Shan, Yi-Ding Chen
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(5): 744-750
Enhanced Detection of Autoantibodies on Protein Microarrays Using a Modified Protein Digestion Technique
Tasneem H. Patwa, Yanfei Wang, Diane M. Simeone, and David M. Lubman
JOURNAL OF PROTEOME RESEARCH (2008) 7(06): 2553-2561
Protein and lysate array technologies in cancer research
Spurrier B, Honkanen P, Holway A, Kumamoto K, Terashima M, Takenoshita S, Wakabayashi G, Austin J, Nishizuka S.
Biotechnol Adv (2008) 26(4): 361-9
A simple strategy for the creation of a recombinant lectin microarray
Hsu KL, Gildersleeve JC, Mahal LK.
Mol Biosyst (2008) 4(6): 654-62. Epub 2008 Apr 14
Cdc34p ubiquitin-conjugating enzyme is a component of the tombusvirus replicase complex and ubiquitinates p33 replication protein
Li Z, Barajas D, Panavas T, Herbst DA, Nagy PD.
J Virol Early Edition: published 7-May-2008
Next-generation high-density self-assembling functional protein arrays
Ramachandran N, Raphael JV, Hainsworth E, Demirkan G, Fuentes MG, Rolfs A, Hu Y, Labaer J.
Nat Methods (2008) 5(6): 535-8
Proteomic analysis of autocrine/paracrine effects of human growth hormone in human mammary carcinoma cells
Vouyovitch CM, Vidal L, Borges S, Raccurt M, Arnould C, Chiesa J, Lobie PE, Lachuer J, Mertani HC.
Adv Exp Med Biol (2008) 617: 493-500
Niobium(V) Oxide (Nb2O5): Application to Phosphoproteomics
Scott B. Ficarro, Jignesh R. Parikh, Nathaniel C. Blank, and Jarrod A. Marto
ANALYTICAL CHEMISTRY (2008) 80(12): 4606-4613
In vivo targets of S-thiolation in Chlamydomonas reinhardtii
Michelet L, Zaffagnini M, Vanacker H, Le Maréchal P, Marchand C, Schroda M, Lemaire SD, Decottignies P.
J Biol Chem Early Edition: published 5-Jun-2008
Analysis of disulphide linkages in bovine ?-casein oligomers using two-dimensional electrophoresis
John W. Holland, Hilton C. Deeth, Paul F. Alewood
ELECTROPHORESIS (2008) 29(11): 2402-2410
The Influence of Sample Preparation and Replicate Analyses on HeLa Cell Phosphoproteome Coverage
Bryan M. Ham, Feng Yang, Hemalatha Jayachandran, Navdeep Jaitly, Matthew E. Monroe, Marina A. Gritsenko, Eric A. Livesay, Rui Zhao, Samuel O. Purvine, Daniel Orton, Joshua N. Adkins, David G. Camp II, Sandra Rossie, and Richard D. Smith
JOURNAL OF PROTEOME RESEARCH (2008) 7(06): 2215-2221
Proteomic Analysis of and Immune Responses to Ehrlichia chaffeensis Lipoproteins
Huang H, Lin M, Wang X, Kikuchi T, Mottaz H, Norbeck A, Rikihisa Y.
Infect Immun Early Edition: published 19-May-2008
Studying O-Linked Protein Glycosylations in Human Plasma
Taufika Islam Williams, Diana A. Saggese, and David C. Muddiman
JOURNAL OF PROTEOME RESEARCH (2008) 7(06): 2562-2568
Post-Translational Modifications of Desulfovibrio vulgaris Hildenborough Sulfate Reduction Pathway Proteins
Sara P. Gaucher, Alyssa M. Redding, Aindrila Mukhopadhyay, Jay D. Keasling, and Anup K. Singh
JOURNAL OF PROTEOME RESEARCH (2008) 7(06): 2320-2331
Proteomic analysis of phosphoproteins regulated by abscisic acid in rice leaves
He H, Li J.
Biochem Biophys Res Commun (2008) 371(4): 883-8
Selective Extraction and Enrichment of Multiphosphorylated Peptides Using Polyarginine-Coated Diamond Nanoparticles
Chia-Kai Chang, Chih-Che Wu, Yi-Sheng Wang, and Huan-Cheng Chang
ANALYTICAL CHEMISTRY (2008) 80(10): 3791-3797
Mass spectrometric identification of formaldehyde-induced peptide modifications under in vivo protein cross-linking conditions
Toews J, Rogalski JC, Clark TJ, Kast J.
Anal Chim Acta (2008) 618(2): 168-83
High-accuracy Prediction of Carcinogenicity by Global Quantitative Analysis of Post-translational Modifications in a 28-Day In Vivo Rat Study
Yamanaka H, Yakabe Y, Saito K, Sekijima M, Sato H, Shirai T.
Cancer Genomics Proteomics (2008) 5(2): 105-16
Isoform Analysis of LC−MS/MS Data from Multidimensional Fractionation of the Serum Proteome
Alexei L. Krasnoselsky, Vitor M. Faca, Sharon J. Pitteri, Qing Zhang, and Samir M. Hanash
JOURNAL OF PROTEOME RESEARCH (2008) 7(06): 2546-2552
Sweet to the extreme: protein glycosylation in Archaea
Yurist-Doutsch S, Chaban B, VanDyke DJ, Jarrell KF, Eichler J.
Mol Microbiol (2008) 68(5): 1079-84
Novel Fe3O4@TiO2 Core−Shell Microspheres for Selective Enrichment of Phosphopeptides in Phosphoproteome Analysis
Yan Li, Xiuqing Xu, Dawei Qi, Chunhui Deng, Pengyuan Yang, and Xiangmin Zhang
JOURNAL OF PROTEOME RESEARCH (2008) 7(06): 2526-2538
Identification of ubiquitinated proteins in Arabidopsis
Manzano C, Abraham Z, López-Torrejón G, Del Pozo JC.
Plant Mol Biol Early Edition: published 6-Jun-2008
Isoform separation of a multi-acetylated protein using capillary polystyrene-divinylbenzene monolithic columns
Sneekes EJ, Damen M, Swart R, Heck AJ.
J Chromatogr A Early Edition: published 24-Apr-2008
Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis
Sugiyama N, Nakagami H, Mochida K, Daudi A, Tomita M, Shirasu K, Ishihama Y.
Mol Syst Biol (2008) 4: 193
Proteomic map of peripheral blood mononuclear cells
Daniele Vergara, Fernanda Chiriacò, Raffaele Acierno, Michele Maffia
PROTEOMICS (2008) 8(10): 2045-2051
Linear Discriminant Analysis-Based Estimation of the False Discovery Rate for Phosphopeptide Identifications
Xiuxia Du, Feng Yang, Nathan P. Manes, David L. Stenoien, Matthew E. Monroe, Joshua N. Adkins, David J. States, Samuel O. Purvine, David G. Camp, II, and Richard D. Smith
JOURNAL OF PROTEOME RESEARCH (2008) 7(06): 2195-2203
On-Line Nano-HPLC/ESI QTOF MS and Tandem MS for Separation, Detection, and Structural Elucidation of Human Erythrocytes Neutral Glycosphingolipid Mixture
Stephan Kirsch, Mostafa Zarei, Mario Cindrić, Johannes Müthing, Laura Bindila, and Jasna Peter-Katalinić
ANALYTICAL CHEMISTRY (2008) 80(12): 4711-4722
Protein lipidation meets proteomics
Meinnel T, Giglione C.
Front Biosci (2008) 13: 6326-40.
Identification of a novel phosphorylation site of acyl-CoA binding protein (ACBP) in nodularin-induced apoptotic hepatocytes
Solstad T, Fismen L, Garberg H, Fladmark KE.
Exp Cell Res (2008) 314(10): 2141-2149
LC-MS for protein characterization: current capabilities and future trends
Chen G, Pramanik BN
Expert Rev Proteomics (2008) 5(3): 435-44
Global quantitative analysis of protein phosphorylation status in fish exposed to microcystin
Mezhoud K, Praseuth D, Francois JC, Bernard C, Edery M.
Adv Exp Med Biol (2008) 617: 419-26
Proteomic and phosphoproteomic analysis of cellular responses in medaka fish (Oryzias latipes) following oral gavage with microcystin-LR
Mezhoud K, Bauchet AL, Château-Joubert S, Praseuth D, Marie A, François JC, Fontaine JJ, Jaeg JP, Cravedi JP, Puiseux-Dao S, Edery M.
Toxicon (2008) 51(8): 1431-1439
Sensitive, Specific, and Quantitative FTICR Mass Spectrometry of Combinatorial Post-Translational Modifications in Intact Histone H4
C. Logan Mackay, Bernard Ramsahoye, Karl Burgess, Ken Cook, Stefan Weidt, James Creanor, David Harrison, Pat Langridge-Smith, Ted Hupp, and Larry Hayward
ANALYTICAL CHEMISTRY (2008) 80(11): 4147-4153
Site-Specific Phosphorylation Profiling of Arabidopsis Proteins by Mass Spectrometry and Peptide Chip Analysis
Sergio de la Fuente van Bentem, Dorothea Anrather, Ilse Dohnal, Elisabeth Roitinger, Edina Csaszar, Jos Joore, Joshua Buijnink, Alessandro Carreri, Celine Forzani, Zdravko J. Lorkovic, Andrea Barta, David Lecourieux, Andreas Verhounig, Claudia Jonak, and Heribert Hirt
JOURNAL OF PROTEOME RESEARCH (2008) 7(06): 2458-2470
Constitutive and dynamic phosphorylation and acetylation sites on NUCKS, a hypermodified nuclear protein, studied by quantitative proteomics
Wiśniewski JR, Zougman A, Krüger S, Ziółkowski P, Pudełko M, Bębenek M, Mann M.
Proteins Early Edition: published 19-May-2008
Insights into and speculations about snake venom metalloproteinase (SVMP) synthesis, folding and disulfide bond formation and their contribution to venom complexity
Fox JW, Serrano SM.
FEBS J (2008) 275(12): 3016-30
Finishing touches: Post-translational modification of protein factors involved in mammalian pre-mRNA 3' end formation
Ryan K, Bauer DL.
Int J Biochem Cell Biol Early Edition: published 1-Apr-2008
Biochemistry of Tau in Alzheimer's disease and related neurological disorders
Sergeant N, Bretteville A, Hamdane M, Caillet-Boudin ML, Grognet P, Bombois S, Blum D, Delacourte A, Pasquier F, Vanmechelen E, Schraen-Maschke S, Buee L
Expert Rev Proteomics (2008) 5(2): 207-24
Global Changes in and Characterization of Specific Sites of Phosphorylation in Mouse and Human Histone H1 Isoforms upon CDK Inhibitor Treatment Using Mass Spectrometry
Leesa J. Deterding, Maureen K. Bunger, Geoffrey C. Banks, Kenneth B. Tomer, and Trevor K. Archer
JOURNAL OF PROTEOME RESEARCH (2008) 7(06): 2368-2379
Phosphoproteome analysis of the human Chang liver cells using SCX and a complementary mass spectrometric strategy
Shaohui Sui, Jinglan Wang, Bing Yang, Lina Song, Jiyang Zhang, Ming Chen, Jinfeng Liu, Zhuang Lu, Yun Cai, Shuo Chen, Wei Bi, Yunping Zhu, Fuchu He, Xiaohong Qian
PROTEOMICS (2008) 8(10): 2024-2034
An improved method for de novo sequencing of arginine-containing, N?-tris(2,4,6-trimethoxyphenyl)phosphonium-acetylated peptides
Hiroki Kuyama, Kazuhiro Sonomura, Keisuke Shima, Osamu Nishimura, Susumu Tsunasawa
Rapid Communications in Mass Spectrometry (2008) 22(13): 2063-2072
MAPRes: Mining association patterns among preferred amino acid residues in the vicinity of amino acids targeted for post-translational modifications
Ishtiaq Ahmad, Wajahat M. Qazi, Ahmed Khurshid, Munir Ahmad, Daniel C. Hoessli, Iffat Khawaja, M. Iqbal Choudhary, Abdul R. Shakoori, Nasir-ud-Din
PROTEOMICS (2008) 8(10): 1954-1958
Surface Plasmon Resonance Study of Protein−Carbohydrate Interactions Using Biotinylated Sialosides
Matthew J. Linman, Joseph D. Taylor, Hai Yu, Xi Chen, and Quan Cheng
ANALYTICAL CHEMISTRY (2008) 80(11): 4007-4013
Protein Modification by Peroxidative Products of Polyunsaturated Fatty Acids
Liu, Wei; Wang, Jin-Ye
Current Proteomics (2008) 5(1): 62-72
Identification of protein kinase substrates by proteomic approaches
Hattori S, Iida N, Kosako H
Expert Rev Proteomics (2008) 5(3): 497-505
Computational Approaches to Protein-Protein Docking
Lee, Kyoungrim; Lee, Joo-Woon
Current Proteomics (2008) 5(1): 10-19
Protein interaction predictions from diverse sources
Liu Y, Kim I, Zhao H.
Drug Discov Today (2008) 13(9-10): 409-16
A review on models and algorithms for motif discovery in protein-protein interaction networks
Giovanni Ciriello and Concettina Guerra
Brief Funct Genomic Proteomic (2008) 7(2): 147-156; doi:10.1093/bfgp/eln015
Pharmacogenomics of cardiovascular pharmacology: molecular network analysis in pleiotropic effects of statin - an experimental elucidation of the pharmacologic action from protein-protein interaction analysis
Shiota M, Kusakabe H, Hikita Y, Nakao T, Izumi Y, Iwao H.
J Pharmacol Sci (2008) 107(1): 15-9
Identification of novel substrates for Cdk5 and new targets for Cdk5 inhibitors using high-density protein microarrays
Cathrin Schnack, Bastian Hengerer, Frank Gillardon
PROTEOMICS (2008) 8(10): 1980-1986
Immunoproteomic identification of the hypothetical protein NMB1468 as a novel lipoprotein ubiquitous in Neisseria meningitidis with vaccine potential
Chi-An Hsu, Wei-Ru Lin, Jung-Chen Li, Yi-Lung Liu, Yen-Tzu Tseng, Chun-Mien Chang, Yeong-Sheng Lee, Chiou-Ying Yang
PROTEOMICS (2008) 8(10): 2115-2125
Lentiviral Vpx accessory factor targets VprBP/DCAF1 substrate adaptor for cullin 4 E3 ubiquitin ligase to enable macrophage infection
Srivastava S, Swanson SK, Manel N, Florens L, Washburn MP, Skowronski J.
PLoS Pathog (2008) 4(5): e1000059
Resolving the network of cell signaling pathways using the evolving yeast two-hybrid system
Ratushny V, Golemis E.
Biotechniques (2008) 44(5): 655-62
The interaction network of the chaperonin CCT
Dekker C, Stirling PC, McCormack EA, Filmore H, Paul A, Brost RL, Costanzo M, Boone C, Leroux MR, Willison KR.
EMBO J Early Edition: published 29-May-2008
Interactive proteomics: what lies ahead?
Suter B, Kittanakom S, Stagljar I.
Biotechniques (2008) 44(5): 681-91
Incorporating high-throughput proteomics experiments into structural biology pipelines: Identification of the low-hanging fruits
Roland A. Pache, Patrick Aloy
PROTEOMICS (2008) 8(10): 1959-1964
A Novel Approach to Investigating Protein/Protein Interactions and Their Functions by TAP-tagged Yeast Strains and its Application to Examine Yeast Transcription Machinery
Jung J, Ahn YJ, Kang LW.
J Microbiol Biotechnol (2008) 18(4): 631-8
Domains mediate protein-protein interactions and nucleate protein assemblies
Costa S, Cesareni G.
Handb Exp Pharmacol (2008) (186): 383-405
Aptamer-Modified Monolithic Capillary Chromatography for Protein Separation and Detection
Qiang Zhao, Xing-Fang Li, and X. Chris Le
ANALYTICAL CHEMISTRY (2008) 80(10): 3915-3920
Mass Spectrometry for Studying the Interaction between Small Molecules and Proteins
Calvo, Enrique; Camafeita, Emilio; Diaz, J. F.; Lopez, Juan A.n.t.o.n.i.o.
Current Proteomics (2008) 5(1): 20-34
Label-Free Detection of Single Protein Molecules and Protein−Protein Interactions Using Synthetic Nanopores
Anpan Han, Marc Creus, Gregor Schürmann, Vincent Linder, Thomas R. Ward, Nico F. de Rooij, and Urs Staufer
ANALYTICAL CHEMISTRY (2008) 80(12): 4651-4658
Characterization of microRNA-regulated protein-protein interaction network
Chun-Wei Hsu, Hsueh-Fen Juan, Hsuan-Cheng Huang
PROTEOMICS (2008) 8(10): 1975-1979
Label-free optical detection of aptamer-protein interactions using gold-capped oxide nanostructures
Kim DK, Kerman K, Hiep HM, Saito M, Yamamura S, Takamura Y, Kwon YS, Tamiya E.
Anal Biochem Early Edition: published 25-Apr-2008
The binary protein interactome of Treponema pallidum--the syphilis spirochete
Titz B, Rajagopala SV, Goll J, Häuser R, McKevitt MT, Palzkill T, Uetz P.
PLoS ONE (2008) 3(5): e2292
A Proteomic Approach to Study Escherichia coli. Acetyl Esterase Interactors Unveil a Sequence Motif Involved in Protein-Protein Interaction
D'Ambrosio C, Mandrich L, Rossi M, Scaloni A, Manco G.
Protein Pept Lett (2008) 15(4): 333-40
Cdc34p ubiquitin-conjugating enzyme is a component of the tombusvirus replicase complex and ubiquitinates p33 replication protein
Li Z, Barajas D, Panavas T, Herbst DA, Nagy PD.
J Virol Early Edition: published 7-May-2008
Towards Absolute Quantification of Therapeutic Monoclonal Antibody in Serum by LC−MS/MS Using Isotope-Labeled Antibody Standard and Protein Cleavage Isotope Dilution Mass Spectrometry
Olivier Heudi, Samuel Barteau, Dieter Zimmer, Joerg Schmidt, Kurt Bill, Natalie Lehmann, Christian Bauer, and Olivier Kretz
ANALYTICAL CHEMISTRY (2008) 80(11): 4200-4207
High-accuracy Prediction of Carcinogenicity by Global Quantitative Analysis of Post-translational Modifications in a 28-Day In Vivo Rat Study
Yamanaka H, Yakabe Y, Saito K, Sekijima M, Sato H, Shirai T.
Cancer Genomics Proteomics (2008) 5(2): 105-16
Identification of differentially expressed proteins in Ficedula flycatchers
Laura Buggiotti, Craig R. Primmer, Petri Kouvonen, Stanislav Bure?, Garry L. Corthals, Erica H. Leder
PROTEOMICS (2008) 8(10): 2150-2153
Quantitation in proteomic experiments utilizing mass spectrometry
Paoletti AC, Washburn MP.
Biotechnol Genet Eng Rev (2006) 22: 1-19
Comparative Proteomic Analysis of Non-small-cell Lung Cancer and Normal Controls Using Serum Label-Free Quantitative Shotgun Technology
Pan J, Chen HQ, Sun YH, Zhang JH, Luo XY.
Lung Early Edition: published 9-May-2008
Identification of estrogen-responsive proteins in MCF-7 human breast cancer cells using label-free quantitative proteomics
Zheying Zhu, Alan R. Boobis, Robert J. Edwards
PROTEOMICS (2008) 8(10): 1987-2005
Evaluating the compatibility of three colorimetric protein assays for two-dimensional electrophoresis experiments
Shao-Hsuan Kao, Hin-Kwan Wong, Chia-Ying Chiang, Han-Min Chen
PROTEOMICS (2008) 8(11): 2178-2184
Proteomics-based strategies in kinase drug discovery
Bantscheff M, Hopf C, Kruse U, Drewes G.
Ernst Schering Found Symp Proc (2007) (3): 1-28
Biological and Technical Variables Affecting Immunoassay Recovery of Cytokines from Human Serum and Simulated Vaginal Fluid: A Multicenter Study
Raina N. Fichorova, Nicola Richardson-Harman, Massimo Alfano, Laurent Belec, Cedric Carbonneil, Silvia Chen, Lisa Cosentino, Kelly Curtis, Charlene S. Dezzutti, Betty Donoval, Gustavo F. Doncel, Melissa Donaghay, Jean-Charles Grivel, Esmeralda Guzman, Madeleine Hayes, Betsy Herold, Sharon Hillier, Carol Lackman-Smith, Alan Landay, Leonid Margolis, Kenneth H. Mayer, Jenna-Malia Pasicznyk, Melanie Pallansch-Cokonis, Guido Poli, Patricia Reichelderfer, Paula Roberts, Irma Rodriguez, Hela Saidi, Rosaria Rita Sassi, Robin Shattock, and James E. Cummins, Jr.
ANALYTICAL CHEMISTRY (2008) 80(12): 4741-4751
A cross-species quantitative proteomic study of salt adaptation in a halotolerant environmental isolate using 15N metabolic labelling
Jagroop Pandhal, Ambrosius P. L. Snijders, Phillip C. Wright, Catherine A. Biggs
PROTEOMICS (2008) 8(11): 2266-2284
Label-Free Detection of Differential Protein Expression by LC/MALDI Mass Spectrometry
Hendrik Neubert, Timothy P. Bonnert, Klaus Rumpel, Brandon T. Hunt, Ernst S. Henle, and Ian T. James
JOURNAL OF PROTEOME RESEARCH (2008) 7(06): 2270-2279
Protein biomarkers for amyotrophic lateral sclerosis
Ryberg H, Bowser R
Expert Rev Proteomics (2008) 5(2): 249-62
Proteomic studies in animal models of diabetes
Svante Resjö, Karin Berger, Malin Fex, Ola Hansson
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(5): 654-669
Analysis of organelles within the nervous system: impact on brain and organelle functions
Tribl F, Meyer HE, Marcus K
Expert Rev Proteomics (2008) 5(2): 333-51
Proteomics in atherosclerosis
Martinez-Pinna R, Martin-Ventura JL, Mas S, Blanco-Colio LM, Tuñon J, Egido J.
Curr Atheroscler Rep (2008) 10(3): 209-15
Mitochondria: A mirror into cellular dysfunction in heart disease
Melanie Y. White, Alistair V. G. Edwards, Stuart J. Cordwell, Jennifer E. Van Eyk
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(6): 845-861
Mass spectrometry: m/z 1983-2008
Zhou M, Veenstra T.
Biotechniques (2008) 44(5): 667-8, 670
Expression profiling of the cerebral ischemic and hypoxic response
Van Elzen R, Moens L, Dewilde S
Expert Rev Proteomics (2008) 5(2): 263-82
Biochemistry of Tau in Alzheimer's disease and related neurological disorders
Sergeant N, Bretteville A, Hamdane M, Caillet-Boudin ML, Grognet P, Bombois S, Blum D, Delacourte A, Pasquier F, Vanmechelen E, Schraen-Maschke S, Buee L
Expert Rev Proteomics (2008) 5(2): 207-24
Identification of protein kinase substrates by proteomic approaches
Hattori S, Iida N, Kosako H
Expert Rev Proteomics (2008) 5(3): 497-505
Subcellular proteomics in neuroscience
Li KW, Smit AB.
Front Biosci (2008) 13: 4416-25.
High-throughput proteomics of breast carcinoma cells: a focus on FTICR-MS
Umar A, Jaremko M, Burgers PC, Luider TM, Foekens JA, Pasa-Tolic L
Expert Rev Proteomics (2008) 5(3): 445-55
Redox signalling in cardiovascular disease
Rebecca L. Charles, Philip Eaton
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(6): 823-836
A review on models and algorithms for motif discovery in protein-protein interaction networks
Giovanni Ciriello and Concettina Guerra
Brief Funct Genomic Proteomic (2008) 7(2): 147-156; doi:10.1093/bfgp/eln015
Advances in genomic and proteomic studies of non-small-cell lung cancer: clinical and translational research perspective
Dziadziuszko R, Hirsch FR.
Clin Lung Cancer (2008) 9(2): 78-84
Quantitation in proteomic experiments utilizing mass spectrometry
Paoletti AC, Washburn MP.
Biotechnol Genet Eng Rev (2006) 22: 1-19
Redox proteomics: understanding oxidative stress in the progression of age-related neurodegenerative disorders
Butterfield DA, Sultana R
Expert Rev Proteomics (2008) 5(2): 157-60
Protein scaffolds, lipid domains and substrate recognition in protein kinase C function: implications for rational drug design
Walker JW.
Handb Exp Pharmacol (2008) (186): 185-203
Mass Spectrometry for Studying the Interaction between Small Molecules and Proteins
Calvo, Enrique; Camafeita, Emilio; Diaz, J. F.; Lopez, Juan A.n.t.o.n.i.o.
Current Proteomics (2008) 5(1): 20-34
Towards Standard Protocols and Guidelines for Urine Proteomics: A Report on the Human Kidney and Urine Proteome Project (HKUPP) Symposium and Workshop 6 October 2007, Seoul, Korea and 1 November 2007, San Francisco, CA, USA
Tadashi Yamamoto, Robyn G. Langham, Pierre Ronco, Mark A. Knepper, Visith Thongboonkerd
PROTEOMICS (2008) 8(11): 2156-2159
Systems biology approaches for the study of multiple sclerosis
Quintana FJ, Farez MF, Weiner HL.
J Cell Mol Med Early Edition: published 26-May-2008
Mining the oncoproteome and studying molecular interactions for biomarker development by 2DE, ChIP and SPR technologies
Ahmed FE
Expert Rev Proteomics (2008) 5(3): 469-96
Alpha-synuclein and Parkinson's disease: a proteomic view
Fasano M, Lopiano L
Expert Rev Proteomics (2008) 5(2): 239-48
Neuroproteomics as a promising tool in Parkinson's disease research
Pienaar IS, Daniels WM, Götz J.
J Neural Transm Early Edition: published 4-Jun-2008
Psychiatric research: psychoproteomics, degradomics and systems biology
Kobeissy FH, Sadasivan S, Liu J, Gold MS, Wang KK
Expert Rev Proteomics (2008) 5(2): 293-314
LC-MS for protein characterization: current capabilities and future trends
Chen G, Pramanik BN
Expert Rev Proteomics (2008) 5(3): 435-44
Cardiovascular Proteomics
Manuel Mayr, Jennifer E. Van Eyk
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(6): 785-786
Proteomic analysis of secretory proteins and vesicles in vascular research
Giordano Pula, Sue Perera, Marianna Prokopi, Anissa Sidibe, Chantal M. Boulanger, Manuel Mayr
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(6): 882-891
Metabolic Action of Thyroid Hormones: Insights from Functional and Proteomic Studies
Silvestri, Elena; Lombardi, Assunta; Lange, Pieter d.; Lanni, Antonia; Goglia, Fernando; Moreno, Maria
Current Proteomics (2008) 5(1): 45-61
Diagnostic and prognostic needs in neurodegenerative disorders: focus on proteomics
Bibl M, Wiltfang J
Expert Rev Proteomics (2008) 5(2): 153-6
High-Performance Mass Spectrometry: Fourier Transform Ion Cyclotron Resonance at 14.5 Tesla
Tanner M. Schaub, Christopher L. Hendrickson, Stevan Horning, John P. Quinn, Michael W. Senko, and Alan G. Marshall
ANALYTICAL CHEMISTRY (2008) 80(11): 3985-3990
Proteomics-based strategies in kinase drug discovery
Bantscheff M, Hopf C, Kruse U, Drewes G.
Ernst Schering Found Symp Proc (2007) (3): 1-28
Two-dimensional polyacrylamide gel electrophoresis (2D-PAGE): advances and perspectives
Issaq H, Veenstra T.
Biotechniques (2008) 44(5): 697-8, 700
A novel role for proteomics in the discovery of cell-surface markers on stem cells: Scratching the surface
Rebekah L. Gundry, Kenneth R. Boheler, Jennifer E. Van Eyk, Bernd Wollscheid
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(6): 892-903
A review of algorithmic techniques for disulfide-bond determination
Rahul Singh
Brief Funct Genomic Proteomic (2008) 7(2): 157-172; doi:10.1093/bfgp/eln008
Synapse proteomics: current status and quantitative applications
Li KW, Jimenez CR
Expert Rev Proteomics (2008) 5(2): 353-60
Nitric oxide-mediated protein modification in cardiovascular physiology and pathology
Axel Gödecke, Jürgen Schrader, Michael Reinartz
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(6): 811-822
Proteomics-based investigations of animal models of disease
Nicolas Bousette, Anthony O. Gramolini, Thomas Kislinger
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(5): 638-653
Protein expression overlap: more important than which proteins change in expression?
Zabel C, Andreew A, Mao L, Hartl D
Expert Rev Proteomics (2008) 5(2): 187-205
Affinity as a tool in life science
Uhlén M.
Biotechniques (2008) 44(5): 649-54
Mitochondrial comparative proteomics: Strengths and pitfalls
Mathy G, Sluse FE.
Biochim Biophys Acta Early Edition: published 3-May-2008
Proteomics of stress response in Bifidobacterium
Sanchez B, Ruiz L, Reyes-Gavilan CG, Margolles A.
Front Biosci (2008) 13: 6905-19.
Facts and artifacts in proteomics of body fluids. What proteomics of saliva is telling us?
Messana I, Inzitari R, Fanali C, Cabras T, Castagnola M.
J Sep Sci Early Edition: published 19-May-2008
Proteomics of neural stem cells
Skalnikova H, Vodicka P, Gadher SJ, Kovarova H
Expert Rev Proteomics (2008) 5(2): 175-86
Insights into and speculations about snake venom metalloproteinase (SVMP) synthesis, folding and disulfide bond formation and their contribution to venom complexity
Fox JW, Serrano SM.
FEBS J (2008) 275(12): 3016-30
Surface plasmon resonance mass spectrometry in proteomics
Visser NF, Heck AJ
Expert Rev Proteomics (2008) 5(3): 425-33
Challenges in Translating Plasma Proteomics from Bench to Bedside: Update from the NHLBI Clinical Proteomics Programs
Gerszten RE, Accurso FJ, Bernard GR, Caprioli RM, Klee EW, Klee GG, Kullo IJ, Laguna TA, Roth FP, Sabatine M, Srinivas P, Wang TJ, Ware LB.
Am J Physiol Lung Cell Mol Physiol Early Edition: published 2-May-2008
Multidimensional advancement of neuroproteomics
Veenstra TD, Marcus K
Expert Rev Proteomics (2008) 5(2): 149-51
Proteomic analysis of a rat model of depression
Mu J, Yang ZS, Xie P
Expert Rev Proteomics (2008) 5(2): 315-20
Animal models in human disease
Claus Zabel, Joachim Klose
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(5): 635-637
Toponomics and neurotoponomics: a new way to medical systems biology
Schubert W, Bode M, Hillert R, Krusche A, Friedenberger M
Expert Rev Proteomics (2008) 5(2): 361-9
Protein interaction predictions from diverse sources
Liu Y, Kim I, Zhao H.
Drug Discov Today (2008) 13(9-10): 409-16
Tissue imaging using MALDI-MS: a new frontier of histopathology proteomics
Fournier I, Wisztorski M, Salzet M
Expert Rev Proteomics (2008) 5(3): 413-24
Protein and lysate array technologies in cancer research
Spurrier B, Honkanen P, Holway A, Kumamoto K, Terashima M, Takenoshita S, Wakabayashi G, Austin J, Nishizuka S.
Biotechnol Adv (2008) 26(4): 361-9
Cardiac myofilaments: from proteome to pathophysiology
Wenhai Jin, Anna T. Brown, Anne M. Murphy
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(6): 800-810
Application of proteomics to hematology: the revolution is starting
Lion N, Tissot JD
Expert Rev Proteomics (2008) 5(3): 375-9
Retroviral proteomics and interactomes: intricate balances of cell survival and viral replication
Van Duyne R, Kehn-Hall K, Klase Z, Easley R, Heydarian M, Saifuddin M, Wu W, Kashanchi F
Expert Rev Proteomics (2008) 5(3): 507-28
Targeted proteomics in Alzheimer's disease: focus on amyloid-beta
Portelius E, Zetterberg H, Gobom J, Andreasson U, Blennow K
Expert Rev Proteomics (2008) 5(2): 225-37
Proteomics as a research tool in clinical and experimental ophthalmology
Lorna M. Cryan, Colm O'Brien
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(5): 762-775
The untiring search for the most complete proteome representation: reviewing the methods
de Souza DM, Oliveira BM, Castro-Dias E, Winck FV, Horiuchi RS, Baldasso PA, Caetano HT, Pires NK, Marangoni S, Novello JC.
Brief Funct Genomic Proteomic Early Edition: published 29-May-2008
Computational methods for protein identification from mass spectrometry data
McHugh L, Arthur JW.
PLoS Comput Biol (2008) 4(2): e12
Proteomic analysis of traumatic brain injury: the search for biomarkers
Prieto DA, Ye X, Veenstra TD
Expert Rev Proteomics (2008) 5(2): 283-91
Protein Modification by Peroxidative Products of Polyunsaturated Fatty Acids
Liu, Wei; Wang, Jin-Ye
Current Proteomics (2008) 5(1): 62-72
Breast tumor metastasis: analysis via proteomic profiling
Goodison S, Urquidi V
Expert Rev Proteomics (2008) 5(3): 457-67
Myofilament proteins: From cardiac disorders to proteomic changes
Chao Yuan, R. John Solaro
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(6): 788-799
Proteomic insights into cardiac cell death and survival
W. Robb MacLellan, Yibin Wang, Thomas M. Vondriska, James N. Weiss, Peipei Ping
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(6): 837-844
The early detection of ovarian cancer: from traditional methods to proteomics. Can we really do better than serum CA-125?
Nossov V, Amneus M, Su F, Lang J, Janco JM, Reddy ST, Farias-Eisner R.
Am J Obstet Gynecol Early Edition: published 9-May-2008
Alcoholism: protein expression profiles in a human hippocampal model
Matsumoto H, Matsumoto I
Expert Rev Proteomics (2008) 5(2): 321-31
Clinical Proteomics in Application to Predictive Diagnostics and Personalized Treatment of Diabetic Patients
Golubnitschaja, Olga
Current Proteomics (2008) 5(1): 35-44
Methods and protocols for the assessment of protein allergenicity and cross-reactivity
Tong JC, Tammi MT.
Front Biosci (2008) 13: 4882-8.
Proteomics Based on Peptide Fractionation by SDS-Free PAGE
Yassel Ramos, Elain Gutierrez, Yoan Machado, Aniel Sánchez, Lila Castellanos-Serra, Luis J. González, Jorge Fernández-de-Cossio, Yasset Pérez-Riverol, Lázaro Betancourt, Jeovanis Gil, Gabriel Padrón, and Vladimir Besada
JOURNAL OF PROTEOME RESEARCH (2008) 7(06): 2427-2434
Mass spectrometric identification of formaldehyde-induced peptide modifications under in vivo protein cross-linking conditions
Toews J, Rogalski JC, Clark TJ, Kast J.
Anal Chim Acta (2008) 618(2): 168-83
Element-tagged immunoassay with ICP-MS detection: Evaluation and comparison to conventional immunoassays
Razumienko E, Ornatsky O, Kinach R, Milyavsky M, Lechman E, Baranov V, Winnik MA, Tanner SD.
J Immunol Methods (2008) 336(1): 56-63
Isoform separation of a multi-acetylated protein using capillary polystyrene-divinylbenzene monolithic columns
Sneekes EJ, Damen M, Swart R, Heck AJ.
J Chromatogr A Early Edition: published 24-Apr-2008
Exploring the Precursor Ion Exclusion Feature of Liquid Chromatography−Electrospray Ionization Quadrupole Time-of-Flight Mass Spectrometry for Improving Protein Identification in Shotgun Proteome Analysis
Nan Wang and Liang Li
ANALYTICAL CHEMISTRY (2008) 80(12): 4696-4710
Identification of differentially expressed proteins in Ficedula flycatchers
Laura Buggiotti, Craig R. Primmer, Petri Kouvonen, Stanislav Bure?, Garry L. Corthals, Erica H. Leder
PROTEOMICS (2008) 8(10): 2150-2153
An application of the 2-nitrobenzenesulfenyl method to proteomic profiling of human colorectal carcinoma: A novel approach for biomarker discovery
Makoto Watanabe, Ichiro Takemasa, Naomasa Kawaguchi, Masakazu Miyake, Noriko Nishimura, Toshiya Matsubara, Ei-ichi Matsuo, Mitsugu Sekimoto, Katsuya Nagai, Nariaki Matsuura, Morito Monden, Osamu Nishimura
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(6): 925-935
In vivo targets of S-thiolation in Chlamydomonas reinhardtii
Michelet L, Zaffagnini M, Vanacker H, Le Maréchal P, Marchand C, Schroda M, Lemaire SD, Decottignies P.
J Biol Chem Early Edition: published 5-Jun-2008
Surface plasmon resonance mass spectrometry in proteomics
Visser NF, Heck AJ
Expert Rev Proteomics (2008) 5(3): 425-33
Novel Fe3O4@TiO2 Core−Shell Microspheres for Selective Enrichment of Phosphopeptides in Phosphoproteome Analysis
Yan Li, Xiuqing Xu, Dawei Qi, Chunhui Deng, Pengyuan Yang, and Xiangmin Zhang
JOURNAL OF PROTEOME RESEARCH (2008) 7(06): 2526-2538
Guided protein extraction from formalin-fixed tissues for quantitative multiplex analysis avoids detrimental effects of histological stains
Karl-Friedrich Becker, Christina Schott, Ingrid Becker, Heinz Höfler
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(5): 737-743
Osmium Tetroxide, 2,2′-Bipyridine: Electroactive Marker for Probing Accessibility of Tryptophan Residues in Proteins
Miroslav Fojta, Sabina Billová, Luděk Havran, Hana Pivoňková, Hana Černocká, Petra Horáková, and Emil Paleček
ANALYTICAL CHEMISTRY (2008) 80(12): 4598-4605
Label-free optical detection of aptamer-protein interactions using gold-capped oxide nanostructures
Kim DK, Kerman K, Hiep HM, Saito M, Yamamura S, Takamura Y, Kwon YS, Tamiya E.
Anal Biochem Early Edition: published 25-Apr-2008
Label-Free Detection of Differential Protein Expression by LC/MALDI Mass Spectrometry
Hendrik Neubert, Timothy P. Bonnert, Klaus Rumpel, Brandon T. Hunt, Ernst S. Henle, and Ian T. James
JOURNAL OF PROTEOME RESEARCH (2008) 7(06): 2270-2279
Enhanced Detection of Autoantibodies on Protein Microarrays Using a Modified Protein Digestion Technique
Tasneem H. Patwa, Yanfei Wang, Diane M. Simeone, and David M. Lubman
JOURNAL OF PROTEOME RESEARCH (2008) 7(06): 2553-2561
Thermodynamic Analysis of Protein Stability and Ligand Binding Using a Chemical Modification- and Mass Spectrometry-Based Strategy
Graham M. West, Liangjie Tang, and Michael C. Fitzgerald
ANALYTICAL CHEMISTRY (2008) 80(11): 4175-4185
Rapid preparation of nuclei-depleted detergent-resistant membrane fractions suitable for proteomics analysis
Adam RM, Yang W, Di Vizio D, Mukhopadhyay NK, Steen H.
BMC Cell Biol (2008) 9(1): 30
Hexapeptide combinatorial ligand libraries: the march for the detection of the low-abundance proteome continues
Boschetti E, Giorgio Righetti P.
Biotechniques (2008) 44(5): 663-5
A simple strategy for the creation of a recombinant lectin microarray
Hsu KL, Gildersleeve JC, Mahal LK.
Mol Biosyst (2008) 4(6): 654-62. Epub 2008 Apr 14
Pooling serum samples may lead to loss of potential biomarkers in SELDI-ToF MS proteomic profiling
Sadiq ST, Agranoff D.
Proteome Science (2008) 6(1): 16
Time-lapse analysis and microdissection of living 3D melanoma cell cultures for genomics and proteomics
Demou ZN.
Biotechnol Bioeng Early Edition: published 19-Mar-2008
Performance of Combinatorial Peptide Libraries in Capturing the Low-Abundance Proteome of Red Blood Cells. 2. Behavior of Resins Containing Individual Amino Acids
Angela Bachi, Carolina Simó, Umberto Restuccia, Luc Guerrier, Frederic Fortis, Egisto Boschetti, Marco Masseroli, and Pier Giorgio Righetti
ANALYTICAL CHEMISTRY (2008) 80(10): 3557-3565
Immunoassays: biological tools for high throughput screening and characterisation of combinatorial libraries
Taipa MA.
Comb Chem High Throughput Screen (2008) 11(4): 325-35
Enhancement of Protein Sensitivity for MALDI Imaging Mass Spectrometry After Chemical Treatment of Tissue Sections
Seeley EH, Oppenheimer SR, Mi D, Chaurand P, Caprioli RM.
J Am Soc Mass Spectrom Early Edition: published 8-Apr-2008
Proteomic Methodological Recommendations for Studies Involving Human Plasma, Platelets, and Peripheral Blood Mononuclear Cells
Baukje de Roos, Susan J. Duthie, Abigael C. J. Polley, Francis Mulholland, Freek G. Bouwman, Carolin Heim, Garry J. Rucklidge, Ian T. Johnson, Edwin C. Mariman, Hannelore Daniel, and Ruan M. Elliott
JOURNAL OF PROTEOME RESEARCH (2008) 7(06): 2280-2290
Polyacrylamide gel plugs enabling 2-D microfluidic protein separations via isoelectric focusing and multiplexed sodium dodecyl sulfate gel electrophoresis
Jikun Liu, Shuang Yang, Cheng S. Lee, Don L. DeVoe
ELECTROPHORESIS (2008) 29(11): 2241-2250
Applications of microwave-assisted proteomics in biotechnology
Sandoval WN, Pham V, Ingle ES, Liu PS, Lill JR.
Comb Chem High Throughput Screen (2007) 10(9): 751-65
Technical Brief: a novel strategy for enrichment of trabecular meshwork protease proteome
Picciani R, Junk AK, Bhattacharya SK.
Mol Vis (2008) 14: 871-7.
Lab-on-a-chip technologies for proteomic analysis from isolated cells
Sedgwick H, Caron F, Monaghan PB, Kolch W, Cooper JM.
J R Soc Interface Early Edition: published 5-Jun-2008
Proteomics as a tool for optimization of human plasma protein separation
Kovac S, Yang X, Huang F, Hixson D, Josic D.
J Chromatogr A Early Edition: published 18-Apr-2008
Fast and Efficient Proteolysis by Microwave-Assisted Protein Digestion Using Trypsin-Immobilized Magnetic Silica Microspheres
Shuang Lin, Guoping Yao, Dawei Qi, Yan Li, Chunhui Deng, Pengyuan Yang, and Xiangmin Zhang
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