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SPS' DigestIssue 53, 22-Jul-2008 |
Matching isotopic distributions from metabolically labeled samples
Sean McIlwain, David Page, Edward L. Huttlin, and Michael R. Sussman
Bioinformatics (2008) 24(13): i339-i347
A Computational Strategy to Analyze Label-Free Temporal Bottom-Up Proteomics Data
Xiuxia Du, Stephen J. Callister, Nathan P. Manes, Joshua N. Adkins, Roxana A. Alexandridis, Xiaohua Zeng, Jung Hyeob Roh, William E. Smith, Timothy J. Donohue, Samuel Kaplan, Richard D. Smith, and Mary S. Lipton
JOURNAL OF PROTEOME RESEARCH (2008) 7(07): 2595-2604
High-performance hardware implementation of a parallel database search engine for real-time peptide mass fingerprinting
Istvan A. Bogdan, Jenny Rivers, Robert J. Beynon, and Daniel Coca
Bioinformatics (2008) 24(13): 1498-1502
PhosphoScan: A Probability-Based Method for Phosphorylation Site Prediction Using MS2/MS3 Pair Information
Yunhu Wan, Diane Cripps, Stefani Thomas, Patricia Campbell, Nicholas Ambulos, Ting Chen, and Austin Yang
JOURNAL OF PROTEOME RESEARCH (2008) 7(07): 2803-2811
Logical Analysis of Data (LAD) model for the early diagnosis of acute ischemic stroke
Reddy A, Wang H, Yu H, Bonates TO, Gulabani V, Azok J, Hoehn G, Hammer PL, Baird AE, Li KC.
BMC Med Inform Decis Mak (2008) 8(1): 30
Data standards and controlled vocabularies for proteomics
Martens L, Palazzi LM, Hermjakob H.
Methods Mol Biol (2008) 484: 279-86
MIAPEGelDB, a web-based submission tool and public repository for MIAPE gel electrophoresis documents
Xavier Robin, Christine Hoogland, Ron D. Appel, Frédérique Lisacek
Journal of Proteomics (2008) 71(2): 249-251
Detection of co-eluted peptides using database search methods
Alves G, Ogurtsov AY, Kwok S, Wu WW, Wang G, Shen RF, Yu YK.
Biol Direct (2008) 3(1): 27
PhosphoScore: An Open-Source Phosphorylation Site Assignment Tool for MSn Data
Brian E. Ruttenberg, Trairak Pisitkun, Mark A. Knepper, and Jason D. Hoffert
JOURNAL OF PROTEOME RESEARCH (2008) 7(07): 3054-3059
DAnTE: a statistical tool for quantitative analysis of -omics data
Ashoka D. Polpitiya, Wei-Jun Qian, Navdeep Jaitly, Vladislav A. Petyuk, Joshua N. Adkins, David G. Camp, II, Gordon A. Anderson, and Richard D. Smith
Bioinformatics (2008) 24(13): 1556-1558
On E-values for tandem MS scoring schemes
Mark R. Segal
Bioinformatics (2008) 24(14): 1652-1653
The PRIDE Proteomics Identifications Database: Data Submission, Query, and Dataset Comparison
Jones P, Côté R.
Methods Mol Biol (2008) 484: 287-303
Proteomic analysis of amniotic fluid to identify women with preterm labor and intra-amniotic inflammation/infection: The use of a novel computational method to analyze mass spectrometric profiling
Romero R, Espinoza J, Rogers WT, Moser A, Kae Nien J, Pedro Kusanovic J, Gotsch F, Erez O, Gomez R, Edwin S, Hassan SS.
J Matern Fetal Neonatal Med (2008) 21(6): 367-87
Hubba: hub objects analyzer--a framework of interactome hubs identification for network biology
Lin CY, Chin CH, Wu HH, Chen SH, Ho CW, Ko MT.
Nucl Acids Res (2008) 36(Web Server issue): W438-43
An accurate and efficient algorithm for Peptide and ptm identification by tandem mass spectrometry
Ning K, Ng HK, Leong HW.
Genome Inform (2007) 19: 119-30
Monte Carlo Simulation-Based Algorithms for Analysis of Shotgun Proteomic Data
Hua Xu and Michael A. Freitas
JOURNAL OF PROTEOME RESEARCH (2008) 7(07): 2605-2615
A Bayesian estimator of protein-protein association probabilities
Jason M. Gilmore, Deanna L. Auberry, Julia L. Sharp, Amanda M. White, Kevin K. Anderson, and Don S. Daly
Bioinformatics (2008) 24(13): 1554-1555
Classification of premalignant pancreatic cancer mass-spectrometry data using decision tree ensembles
Ge G, Wong GW.
BMC Bioinformatics (2008) 9(1): 275
Comprehensive Comparison of Collision Induced Dissociation and Electron Transfer Dissociation
Henrik Molina, Rune Matthiesen, Kumaran Kandasamy, and Akhilesh Pandey
ANALYTICAL CHEMISTRY (2008) 80(13): 4825-4835
PRINCESS, a Protein Interaction Confidence Evaluation System with Multiple Data Sources
Dong Li, Wanlin Liu, Zhongyang Liu, Jian Wang, Qijun Liu, Yunping Zhu, and Fuchu He
Mol Cell Proteomics (2008) 7(6): 1043-1052
Aligning LC peaks by converting gradient retention times to retention index of peptides in proteomic experiments
Kosaku Shinoda, Masaru Tomita, and Yasushi Ishihama
Bioinformatics (2008) 24(14): 1590-1595
A support vector machine model for the prediction of proteotypic peptides for accurate mass and time proteomics
Bobbie-Jo M. Webb-Robertson, William R. Cannon, Christopher S. Oehmen, Anuj R. Shah, Vidhya Gurumoorthi, Mary S. Lipton, and Katrina M. Waters
Bioinformatics (2008) 24(13): 1503-1509
Rapid and Accurate Peptide Identification from Tandem Mass Spectra
Christopher Y. Park, Aaron A. Klammer, Lukas Käll, Michael J. MacCoss, and William S. Noble
JOURNAL OF PROTEOME RESEARCH (2008) 7(07): 3022-3027
OMSSAGUI: An open-source user interface component to configure and run the OMSSA search engine
Ravi Tharakan, Lennart Martens, Jennifer E. Van Eyk, David R. Graham
PROTEOMICS (2008) 8(12): 2376-2378
In response to 'On E-value for tandem MS scoring schemes'
Jainab Khatun and Morgan Giddings
Bioinformatics (2008) 24(14): 1654
Ovarian cancer diagnosis with complementary learning fuzzy neural network
Tan TZ, Quek C, Ng GS, Razvi K.
Artif Intell Med (2008) 43(3): 207-22
On preprocessing and antisymmetry in de novo Peptide sequencing: improving efficiency and accuracy
Ning K, Ye N, Leong HW.
J Bioinform Comput Biol (2008) 6(3): 467-92
Validation of Endogenous Peptide Identifications Using a Database of Tandem Mass Spectra
Maria Fälth, Marcus Svensson, Anna Nilsson, Karl Sköld, David Fenyö, and Per E. Andren
JOURNAL OF PROTEOME RESEARCH (2008) 7(07): 3049-3053
Properties of Average Score Distributions of SEQUEST: The Probability Ratio Method
Salvador Martinez-Bartolome, Pedro Navarro, Fernando Martin-Maroto, Daniel Lopez-Ferrer, Antonio Ramos-Fernandez, Margarita Villar, Josefa P. Garcia-Ruiz, and Jesus Vazquez
Mol Cell Proteomics (2008) 7(6): 1135-1145
Postexperiment Monoisotopic Mass Filtering and Refinement (PE-MMR) of Tandem Mass Spectrometric Data Increases Accuracy of Peptide Identification in LC/MS/MS
Byunghee Shin, Hee-Jung Jung, Seok-Won Hyung, Hokeun Kim, Dongkyu Lee, Cheolju Lee, Myeong-Hee Yu, and Sang-Won Lee
Mol Cell Proteomics (2008) 7(6): 1124-1134
High accuracy mass spectrometry analysis as a tool to verify and improve gene annotation using Mycobacterium tuberculosis as an example
de Souza GA, Malen H, Softeland T, Salensminde G, Prasad S, Jonassen I, Wiker HG.
BMC Genomics (2008) 9(1): 316
Quantitative Analysis of Isotope Distributions In Proteomic Mass Spectrometry Using Least-Squares Fourier Transform Convolution
Edit Sperling, Anne E. Bunner, Michael T. Sykes, and James R. Williamson
ANALYTICAL CHEMISTRY (2008) 80(13): 4906-4917
The zebrafish secretome
Klee EW.
Zebrafish (2008) 5(2): 131-8
PepSeeker: Mining Information from Proteomic Data
Siepen JA, Selley JN, Hubbard SJ.
Methods Mol Biol (2008) 484: 319-32
Exploiting the proteome to improve the genome-wide genetic analysis of epistasis in common human diseases
Pattin KA, Moore JH.
Hum Genet Early Edition: published 13-Jun-2008
Modeling peptide fragmentation with dynamic Bayesian networks for peptide identification
Aaron A. Klammer, Sheila M. Reynolds, Jeff A. Bilmes, Michael J. MacCoss, and William Stafford Noble
Bioinformatics (2008) 24(13): i348-i356
A central resource for platelet proteomics
Cagney G, McRedmond J.
Arterioscler Thromb Vasc Biol (2008) 28(7): 1214-5
Evaluation of the Variables Characterized by Significant Discriminating Power in the Application of SIMCA Classification Method to Proteomic Studies
Emilio Marengo, Elisa Robotti, Marco Bobba, and Pier Giorgio Righetti
JOURNAL OF PROTEOME RESEARCH (2008) 7(07): 2789-2796
Isotope correction of mass spectrometry profiles
Günther Eibl, Katussevani Bernardo, Therese Koal, Steven L. Ramsay, Klaus M. Weinberger, Armin Graber
Rapid Communications in Mass Spectrometry (2008) 22(14): 2248-2252
LIMS and the art of MS proteomics
Piggee C
Anal Chem (2008) 80(13): 4801-6
Toward High-Throughput and Reliable Peptide Identification via MS/MS Spectra
Liu J.
Methods Mol Biol (2008) 484: 333-44
TOPDOM: database of domains and motifs with conservative location in transmembrane proteins
Gabor E. Tusnady, Lajos Kalmar, Hedi Hegyi, Peter Tompa, and Istvan Simon
Bioinformatics (2008) 24(12): 1469-1470
The World-2DPAGE Constellation to promote and publish gel-based proteomics data through the ExPASy server
Christine Hoogland, Khaled Mostaguir, Ron D. Appel, Frédérique Lisacek
Journal of Proteomics (2008) 71(2): 245-248
SjTPdb: integrated transcriptome and proteome database and analysis platform for Schistosoma japonicum
Liu F, Chen P, Cui SJ, Wang ZQ, Han ZG.
BMC Genomics (2008) 9(1): 304
Wavelet-Based Method for Noise Characterization and Rejection in High-Performance Liquid Chromatography Coupled to Mass Spectrometry
Salvatore Cappadona, Fredrik Levander, Maria Jansson, Peter James, Sergio Cerutti, and Linda Pattini
ANALYTICAL CHEMISTRY (2008) 80(13): 4960-4968
Assessment and improvement of the Plasmodium yoelii yoelii genome annotation through comparative analysis
Ashley Vaughan, Sum-Ying Chiu, Gowthaman Ramasamy, Ling Li, Malcolm J. Gardner, Alice S. Tarun, Stefan H.I. Kappe, and Xinxia Peng
Bioinformatics (2008) 24(13): i383-i389
Comparison of Drug Distribution Images from Whole-Body Thin Tissue Sections Obtained Using Desorption Electrospray Ionization Tandem Mass Spectrometry and Autoradiography
Vilmos Kertesz, Gary J. Van Berkel, Marissa Vavrek, Kenneth A. Koeplinger, Bradley B. Schneider, and Thomas R. Covey
ANALYTICAL CHEMISTRY (2008) 80(13): 5168-5177
Reversible jump MCMC approach for peak identification for stroke SELDI mass spectrometry using mixture model
Yuan Wang, Xiaobo Zhou, Honghui Wang, King Li, Lixiu Yao, and Stephen T.C. Wong
Bioinformatics (2008) 24(13): i407-i413
The Expression of Heat Shock Protein HSP60A Reveals a Dynamic Mitochondrial Pattern in Drosophila melanogaster Embryos
Luis Alberto Baena-López, Jana Alonso, Javier Rodriguez, and Juan F. Santarén
JOURNAL OF PROTEOME RESEARCH (2008) 7(07): 2780-2788
Toward a Full Characterization of the Human 20S Proteasome Subunits and Their Isoforms by a Combination of Proteomic Approaches
Uttenweiler-Joseph S, Claverol S, Sylvius L, Bousquet-Dubouch MP, Burlet-Schiltz O, Monsarrat B.
Methods Mol Biol (2008) 484: 111-30
The zebrafish secretome
Klee EW.
Zebrafish (2008) 5(2): 131-8
Proteomes of the aphid Macrosiphum euphorbiae in its resistance and susceptibility responses to differently compatible parasitoids
Nguyen TT, Boudreault S, Michaud D, Cloutier C.
Insect Biochem Mol Biol (2008) 38(7): 730-9
Plasmodium lipid rafts contain proteins implicated in vesicular trafficking and signalling as well as members of the PIR superfamily, potentially implicated in host immune system interactions
Francesco Di Girolamo, Carla Raggi, Cecilia Birago, Elisabetta Pizzi, Marco Lalle, Leonardo Picci, Tomasino Pace, Angela Bachi, Joke de Jong, Chris J. Janse, Andrew P. Waters, Massimo Sargiacomo, Marta Ponzi
PROTEOMICS (2008) 8(12): 2500-2513
Current developments on Schistosoma proteomics
Verjovski-Almeida S, Demarco R.
Acta Trop Early Edition: published 1-May-2008
Evolutionary and Transcriptional Analysis of Karyopherin {beta} Superfamily Proteins
Yu Quan, Zhi-Liang Ji, Xiao Wang, Alan M. Tartakoff, and Tao Tao
Mol Cell Proteomics (2008) 7(7): 1254-1269
From genome to proteome: great progress in the domesticated silkworm(Bombyx mori L.)
Zhou Z, Yang H, Zhong B.
Acta Biochim Biophys Sin (Shanghai) (2008) 40(7): 601-11
Identification of Glucose-Derived Cross-Linking Sites in Ribonuclease A
Zhenyu Dai, Benlian Wang, Gang Sun, Xingjun Fan, Vernon E. Anderson, and Vincent M. Monnier
JOURNAL OF PROTEOME RESEARCH (2008) 7(07): 2756-2768
Rho-GDI{alpha} Downregulated by Low Shear Stress Promotes Vascular Smooth Muscle Cell Migration and Apoptosis: A Proteomic Analysis
Qi YX, Qu MJ, Long DK, Liu B, Yao QP, Chien S, Jiang ZL.
Cardiovasc Res Early Edition: published 7-Jun-2008
Multiple Phosphorylations in the C-terminal Tail of Plant Plasma Membrane Aquaporins: Role in Subcellular Trafficking of AtPIP2;1 in Response to Salt Stress
Sodana Prak, Sonia Hem, Julie Boudet, Gaelle Viennois, Nicolas Sommerer, Michel Rossignol, Christophe Maurel, and Veronique Santoni
Mol Cell Proteomics (2008) 7(6): 1019-1030
Comparative proteomics of chloroplasts envelopes from C3 and C4 plants reveals specific adaptations of the plastid envelope to C4 photosynthesis and candidate proteins required for maintaining C4 metabolite fluxes
Brautigam A, Hofmann-Benning S, Weber AP.
Plant Physiol Early Edition: published 3-Jul-2008
CRHR1-dependent effects on protein expression and posttranslational modification in AtT-20 cells
Kronsbein HC, Jastorff AM, Maccarrone G, Stalla G, Wurst W, Holsboer F, Turck CW, Deussing JM.
Mol Cell Endocrinol Early Edition: published 5-Jun-2008
A Proteomic Profiling Approach to Reveal a Novel Role of BnD22 (Brassica napus drought 22 kD)/Water Soluble Chlorophyll binding Protein in young leaves during Nitrogen Remobilization induced by Stressful conditions
Desclos M, Dubousset L, Etienne P, Caherec FL, Satoh H, Bonnefoy J, Ourry A, Avice JC.
Plant Physiol Early Edition: published 13-Jun-2008
Evolutionary expansion and anatomical specialization of synapse proteome complexity
Emes RD, Pocklington AJ, Anderson CN, Bayes A, Collins MO, Vickers CA, Croning MD, Malik BR, Choudhary JS, Armstrong JD, Grant SG.
Nat Neurosci (2008) 11(7): 799-806
The in Vivo Phosphorylation Sites in Multiple Isoforms of Amphiphysin I from Rat Brain Nerve Terminals
George E. Craft, Mark E. Graham, Nicolai Bache, Martin R. Larsen, and Phillip J. Robinson
Mol Cell Proteomics (2008) 7(6): 1146-1161
Large Scale Screening for Novel Rab Effectors Reveals Unexpected Broad Rab Binding Specificity
Mitsunori Fukuda, Eiko Kanno, Koutaro Ishibashi, and Takashi Itoh
Mol Cell Proteomics (2008) 7(6): 1031-1042
Scaled-Down Purification Protocol To Access Proteomic Analysis of 20S Proteasome from Human Tissue Samples: Comparison of Normal and Tumor Colorectal Cells
Manuelle Ducoux-Petit, Sandrine Uttenweiler-Joseph, Franck Brichory, Marie-Pierre Bousquet-Dubouch, Odile Burlet-Schiltz, Jean-François Haeuw, and Bernard Monsarrat
JOURNAL OF PROTEOME RESEARCH (2008) 7(07): 2852-2859
Effect of Environmental Stress during Grain Filling on the Soluble Proteome of Wheat (Triticum aestivum) Dough Liquor
Sancho AI, Gillabert M, Tapp H, Shewry PR, Skeggs PK, Mills EN.
J Agric Food Chem (2008) 56(13): 5386-93
Trypanosoma brucei Mitochondrial Ribosomes: Affinity Purification and Component Identification by Mass Spectrometry
Alena Zikova, Aswini K. Panigrahi, Rachel A. Dalley, Nathalie Acestor, Atashi Anupama, Yuko Ogata, Peter J. Myler, and Kenneth Stuart
Mol Cell Proteomics (2008) 7(7): 1286-1296
In-Depth Investigation of Soybean Seed-Filling Proteome and Comparison with a Parallel Study of Rapeseed
Agrawal GK, Hajduch M, Graham K, Thelen JJ.
Plant Physiol Early Edition: published 3-Jul-2008
Proteomic Analysis of the Retinal Rod Outer Segment Disks
Isabella Panfoli, Luca Musante, Angela Bachi, Silvia Ravera, Daniela Calzia, Angela Cattaneo, Maurizio Bruschi, Paolo Bianchini, Alberto Diaspro, Alessandro Morelli, Isidoro M. Pepe, Carlo Tacchetti, and Giovanni Candiano
JOURNAL OF PROTEOME RESEARCH (2008) 7(07): 2654-2669
Electrophoretic Analysis of the Mitochondrial Outer Membrane Rupture Induced by Permeability Transition
Hans Zischka, Nathanael Larochette, Florian Hoffmann, Daniela Hamöller, Nora Jägemann, Josef Lichtmannegger, Luise Jennen, Josef Müller-Höcker, Frigga Roggel, Martin Göttlicher, Angelika M. Vollmar, and Guido Kroemer
ANALYTICAL CHEMISTRY (2008) 80(13): 5051-5058
The recovery of Mycobacterium avium subspecies paratuberculosis from the intestine of infected ruminants for proteomic evaluation
Egan S, Lanigan M, Shiell B, Beddome G, Stewart D, Vaughan J, Michalski WP.
J Microbiol Methods Early Edition: published 14-May-2008
Grape berry plasma membrane proteome analysis and its differential expression during ripening
Zhang J, Ma H, Feng J, Zeng L, Wang Z, Chen S.
J Exp Bot Early Edition: published 11-Jun-2008
DsbA plays a critical and multi-faceted role in the production of secreted virulence factors by the phytopathogen, Erwinia carotovora subsp. atroseptica
Coulthurst SJ, Lilley KS, Hedley PE, Liu H, Toth IK, Salmond GP.
J Biol Chem Early Edition: published 18-Jun-2008
Oviductal Cell Proteome Alterations during the Reproductive Cycle in Pigs
Adil Seytanoglu, A. Stephen Georgiou, Edita Sostaric, Paul F. Watson, William V. Holt, and Alireza Fazeli
JOURNAL OF PROTEOME RESEARCH (2008) 7(07): 2825-2833
Hydroponic isotope labelling of entire plants (HILEP) for quantitative plant proteomics; an oxidative stress case study
Bindschedler LV, Palmblad M, Cramer R.
Phytochemistry (2008) 69(10): 1962-72
In-cell Selectivity Profiling of Serine Protease Inhibitors by Activity-based Proteomics
Ludovic C. J. Gillet, Kenji Namoto, Alexandra Ruchti, Sjouke Hoving, Danielle Boesch, Bruno Inverardi, Dieter Mueller, Michele Coulot, Patrick Schindler, Patrick Schweigler, Anna Bernardi, and Shirley Gil-Parrado
Mol Cell Proteomics (2008) 7(7): 1241-1253
Enrichment of Distinct Microfilament-Associated and GTP-Binding-Proteins in Membrane/Microvilli Fractions from Lymphoid Cells
Jian-Jiang Hao, Guanghui Wang, Trairak Pisitkun, Genaro Patino-Lopez, Kunio Nagashima, Mark A. Knepper, Rong-Fong Shen, and Stephen Shaw
JOURNAL OF PROTEOME RESEARCH (2008) 7(07): 2911-2927
Snake venomics of the Armenian mountain vipers Macrovipera lebetina obtusa and Vipera raddei
Libia Sanz, Naira Ayvazyan, Juan J. Calvete
Journal of Proteomics (2008) 71(2): 198-209
Deciphering the proteomic profile of Mycobacterium leprae cell envelope
Maria Angela M. Marques, Ana Gisele C. Neves-Ferreira, Erika K. Xavier da Silveira, Richard H. Valente, Alexander Chapeaurouge, Jonas Perales, Renato da Silva Bernardes, Karen M. Dobos, John S. Spencer, Patrick J. Brennan, Maria Cristina V. Pessolani
PROTEOMICS (2008) 8(12): 2477-2491
Proteomic Analysis of Pinus radiata Needles: 2-DE Map and Protein Identification by LC/MS/MS and Substitution-Tolerant Database Searching
Luis Valledor, Maria A. Castillejo, Christof Lenz, Roberto Rodríguez, Maria J. Cañal, and Jesús Jorrín
JOURNAL OF PROTEOME RESEARCH (2008) 7(07): 2616-2631
Difference gel electrophoresis analysis of Ras-transformed fibroblast cell-derived exosomes
Hong Ji, Nasrollah Erfani, Bow J. Tauro, Eugene A. Kapp, Hong-Jian Zhu, Robert L. Moritz, Justin W. E. Lim, Richard J. Simpson
ELECTROPHORESIS (2008) 29(12): 2660-2671
Proteomic analysis of the honey bee worker venom gland focusing on the mechanisms of protection against tissue damage
Peiren N, de Graaf DC, Vanrobaeys F, Danneels EL, Devreese B, Van Beeumen J, Jacobs FJ.
Toxicon Early Edition: published 29-May-2008
The molecular basis of shoot responses of maize seedlings to Trichoderma harzianum T22 inoculation of the root: a proteomic approach
Shoresh M, Harman GE.
Plant Physiol Early Edition: published 18-Jun-2008
Proteomics and Phylogenetic Analysis of the Cathepsin L Protease Family of the Helminth Pathogen Fasciola hepatica: Expansion of a Repertoire of Virulence-associated Factors
Mark W. Robinson, Jose F. Tort, Jonathan Lowther, Sheila M. Donnelly, Emily Wong, Weibo Xu, Colin M. Stack, Matthew Padula, Ben Herbert, and John P. Dalton
Mol Cell Proteomics (2008) 7(6): 1111-1123
Spatial Differences in an Integral Membrane Proteome Detected in Laser Capture Microdissected Samples
Zhen Wang, Jun Han, and Kevin L Schey
JOURNAL OF PROTEOME RESEARCH (2008) 7(07): 2696-2702
Plant-pathogen interactions: what is proteomics telling us?
Mehta A, Brasileiro AC, Souza DS, Romano E, Campos MA, Grossi-de-Sá MF, Silva MS, Franco OL, Fragoso RR, Bevitori R, Rocha TL.
FEBS J Early Edition: published 27-Jun-2008
Leishmania infantum: tuning digitonin fractionation for comparative proteomic of the mitochondrial protein content
Hide M, Ritleng AS, Brizard JP, Monte-Allegre A, Sereno D.
Parasitol Res Early Edition: published 25-Jun-2008
Proteolytic profiling of the extracellular matrix degradome
Baronas-Lowell D, Lauer-Fields JL, Al-Ghoul M, Fields GB.
Methods Mol Biol (2007) 386: 167-202
Identification of protein components from the mature ovary of the sea urchin Evechinus chloroticus (Echinodermata: Echinoidea)
Mary A. Sewell, Soren Eriksen, Martin J. Middleditch
PROTEOMICS (2008) 8(12): 2531-2542
Proteome-wide characterization of seed aging in Arabidopsis. A comparison between artificial and natural aging protocols
Rajjou L, Lovigny Y, Groot SP, Belghazi M, Job C, Job D.
Plant Physiol Early Edition: published 3-Jul-2008
Chemical Rescue of {Delta}F508-CFTR Mimics Genetic Repair in Cystic Fibrosis Bronchial Epithelial Cells
Om V. Singh, Harvey B. Pollard, and Pamela L. Zeitlin
Mol Cell Proteomics (2008) 7(6): 1099-1110
Physiological manipulation of cellular activity tunes protein and ultrastructural profiles in a neuroendocrine cell
Van Herp F, Bakel N, Coenen A, Sergeant K, Devreese B, Martens G.
J Endocrinol Early Edition: published 24-Jun-2008
Analysis of environmental stress response on the proteome level
Nesatyy VJ, Suter MJ.
Mass Spectrom Rev Early Edition: published 13-Jun-2008
Proteomic modeling for HIV-1 infected microglia-astrocyte crosstalk
Wang T, Gong N, Liu J, Kadiu I, Kraft-Terry SD, Mosley RL, Volsky DJ, Ciborowski P, Gendelman HE.
PLoS ONE (2008) 3(6): e2507
Surveying Ubiquitin Structure by Noncovalent Attachment of Distance Constrained Bis(crown) Ethers
Tony Ly, Zhenjiu Liu, Brian G. Pujanauski, Richmond Sarpong, and Ryan R. Julian
ANALYTICAL CHEMISTRY (2008) 80(13): 5059-5064
The role of post-translational modifications for learning and memory formation
Berta Sunyer, Weifei Diao, Gert Lubec
ELECTROPHORESIS (2008) 29(12): 2593-2602
Altered expression of calreticulin during the development of fibrosis
Katerina P. Kypreou, Panagiotis Kavvadas, Panagiotis Karamessinis, Michalis Peroulis, Avra Alberti, Paschalis Sideras, Stelios Psarras, Yasemie Capetanaki, Panagiotis K. Politis, Aristidis S. Charonis
PROTEOMICS (2008) 8(12): 2407-2419
A gel-based reference map of the porcine hepatocyte proteome
Caperna TJ, Shannon AE, Garrett WM.
Domest Anim Endocrinol Early Edition: published 6-Mar-2008
Proteomics as a tool for the modelling of biological processes and biomarker development in nutrition research
de Roos B, McArdle HJ.
Br J Nutr (2008) 99(S3): S66-S71
Plasma Membrane Proteomics of Human Embryonic Stem Cells and Human Embryonal Carcinoma Cells
Wilma Dormeyer, Dennis van Hoof, Stefan R. Braam, Albert J. R. Heck, Christine L. Mummery, and Jeroen Krijgsveld
JOURNAL OF PROTEOME RESEARCH (2008) 7(07): 2936-2951
A proteomic and phosphoproteomic analysis of Oryza sativa plasma membrane and vacuolar membrane
Whiteman SA, Nühse TS, Ashford DA, Sanders D, Maathuis FJ.
Plant J Early Edition: published 13-Jun-2008
Altered Proteins in MDCK Renal Tubular Cells in Response to Calcium Oxalate Dihydrate Crystal Adhesion: A Proteomics Approach
Theptida Semangoen, Supachok Sinchaikul, Shui-Tein Chen, and Visith Thongboonkerd
JOURNAL OF PROTEOME RESEARCH (2008) 7(07): 2889-2896
Retinal Pigment Epithelium Lipofuscin Proteomics
Kwok-Peng Ng, Bogdan Gugiu, Kutralanathan Renganathan, Matthew W. Davies, Xiaorong Gu, John S. Crabb, So Ra Kim, Malgorzata B. Rozanowska, Vera L. Bonilha, Mary E. Rayborn, Robert G. Salomon, Janet R. Sparrow, Michael E. Boulton, Joe G. Hollyfield, and John W. Crabb
Mol Cell Proteomics (2008) 7(7): 1397-1405
Characterization of the Cholesterol-Reducing Activity in a Cell-Free Supernatant of Lactobacillus acidophilus ATCC 43121
Kim Y, Whang JY, Whang KY, Oh S, Kim SH.
Biosci Biotechnol Biochem (2008) 72(6): 1483-90
Integrated Transcriptomics, Proteomics, and Metabolomics Analyses To Survey Ozone Responses in the Leaves of Rice Seedling
Kyoungwon Cho, Junko Shibato, Ganesh Kumar Agrawal, Young-Ho Jung, Akihiro Kubo, Nam-Soo Jwa, Shigeru Tamogami, Kouji Satoh, Shoshi Kikuchi, Tetsuji Higashi, Shinzo Kimura, Hikaru Saji, Yoshihide Tanaka, Hitoshi Iwahashi, Yoshinori Masuo, and Randeep Rakwal
JOURNAL OF PROTEOME RESEARCH (2008) 7(07): 2980-2998
Carboxypeptidase E mediates palmitate-induced {beta}-cell ER stress and apoptosis
Jeffrey KD, Alejandro EU, Luciani DS, Kalynyak TB, Hu X, Li H, Lin Y, Townsend RR, Polonsky KS, Johnson JD.
Proc Natl Acad Sci U S A (2008) 105(24): 8452-7
Comparative proteomic analysis of PAI-1 and TNF-alpha-derived endothelial microparticles
Danielle B. Peterson, Tara Sander, Sushma Kaul, Bassam T. Wakim, Brian Halligan, Simon Twigger, Kirkwood A. Pritchard Jr., Keith T. Oldham, Jing-Song Ou
PROTEOMICS (2008) 8(12): 2430-2446
NEUROLOGICAL AND PHYSIOLOGICAL DISORDERS IN ARTEMIA HARBORING MANIPULATIVE CESTODES
Sanchez MI, Thomas F, Perrot-Minnot MJ, Biron D, Bertrand-Michel J, Misse D.
J Parasitol Early Edition: published 28-May-2008
Insight into the proteome of the hyperthermophilic Crenarchaeon Ignicoccus hospitalis: the major cytosolic and membrane proteins
Burghardt T, Saller M, Gürster S, Müller D, Meyer C, Jahn U, Hochmuth E, Deutzmann R, Siedler F, Babinger P, Wirth R, Huber H, Rachel R.
Arch Microbiol Early Edition: published 27-Jun-2008
Quantitative changes in protein expression of cadmium-exposed poplar plants
Pol Kieffer, Jacques Dommes, Lucien Hoffmann, Jean-François Hausman, Jenny Renaut
PROTEOMICS (2008) 8(12): 2514-2530
Mitochondrial ATP synthase is a target for TNBS-induced protein carbonylation in XS-106 dendritic cells
Jeong Hwan Je, Tae Hyung Lee, Dong Hyun Kim, Young Hun Cho, Ju Hee Lee, Soo Chan Kim, Sang-Kyou Lee, Jaewon Lee, Min-Geol Lee
PROTEOMICS (2008) 8(12): 2384-2393
Physiological Role of the Cellular Prion Protein (PrPc): Protein Profiling Study in Two Cell Culture Systems
Sanja Ramljak, Abdul R. Asif, Victor W. Armstrong, Arne Wrede, Martin H. Groschup, Anne Buschmann, Walter Schulz-Schaeffer, Walter Bodemer, and Inga Zerr
JOURNAL OF PROTEOME RESEARCH (2008) 7(07): 2681-2695
Transcriptomic and Proteomic Analyses of Mouse Cerebellum Reveals Alterations in RasGRF1 Expression Following In Vivo Chronic Treatment with Delta 9-Tetrahydrocannabinol
Colombo G, Rusconi F, Rubino T, Cattaneo A, Martegani E, Parolaro D, Bachi A, Zippel R.
J Mol Neurosci Early Edition: published 27-Jun-2008
Phosphorylation of the Human Full-Length Protein Kinase Cι
Boris Macek, Christian Benda, Anja Jestel, Klaus Maskos, Matthias Mann, and Albrecht Messerschmidt
JOURNAL OF PROTEOME RESEARCH (2008) 7(07): 2928-2935
Excretory-secretory products of larval Fasciola hepatica investigated using a two-dimensional proteomic approach
Gourbal BE, Guillou F, Mitta G, Sibille P, Thèron A, Pointier JP, Coustau C.
Mol Biochem Parasitol Early Edition: published 8-May-2008
A High Throughput Proteomics Screen Identifies Novel Substrates of Death-associated Protein Kinase
Shani Bialik, Hanna Berissi, and Adi Kimchi
Mol Cell Proteomics (2008) 7(6): 1089-1098
A proteomic analysis of rice seedlings responding to 1,2,4-trichlorobenzene stress
Ge C, Wan D, Wang Z, Ding Y, Wang Y, Shang Q, Ma F, Luo S.
J Environ Sci (China) (2008) 20(3): 309-19
Differences in the protein expression in limbal versus central human corneal epithelium - a search for stem cell markers
Lyngholm M, Vorum H, Nielsen K, Ostergaard M, Honoré B, Ehlers N.
Exp Eye Res Early Edition: published 10-May-2008
Proteomic analysis of spore wall proteins and identification of two spore wall proteins from Nosema bombycis (Microsporidia)
Zhengli Wu, Yanhong Li, Guoqing Pan, Xiaohui Tan, Junhua Hu, Zeyang Zhou, Zhonghuai Xiang
PROTEOMICS (2008) 8(12): 2447-2461
Proteomics of Photoreceptor Outer Segments Identifies a Subset of SNARE and Rab Proteins Implicated in Membrane Vesicle Trafficking and Fusion
Michael C. M. Kwok, Juha M. Holopainen, Laurie L. Molday, Leonard J. Foster, and Robert S. Molday
Mol Cell Proteomics (2008) 7(6): 1053-1066
Deep Coverage Mouse Red Blood Cell Proteome: A First Comparison with the Human Red Blood Cell
Erica M. Pasini, Morten Kirkegaard, Doris Salerno, Peter Mortensen, Matthias Mann, and Alan W. Thomas
Mol Cell Proteomics (2008) 7(7): 1317-1330
Purification from Human Milk of Matriptase Complexes with Secreted Serpins: Mechanism for Inhibition of Matriptase in The Absence of HAI-1
Tseng IC, Chou FP, Su SF, Oberst MD, Madayiputhiya N, Lee MS, Wang JK, Sloane DE, Johnson MD, Lin CY.
Am J Physiol Cell Physiol Early Edition: published 11-Jun-2008
Protease proteomics: Revealing protease in vivo functions using systems biology approaches
Doucet A, Overall CM.
Mol Aspects Med Early Edition: published 1-May-2008
Heterogeneity of the Mitochondrial Proteome for Photosynthetic and Non-photosynthetic Arabidopsis Metabolism
Chun Pong Lee, Holger Eubel, Nicholas O'Toole, and A. Harvey Millar
Mol Cell Proteomics (2008) 7(7): 1297-1316
Combined Effect of Gender and Caloric Restriction on Liver Proteomic Expression Profile
Adamo Valle, Elena Silvestri, Maria Moreno, Angela Chambery, Jordi Oliver, Pilar Roca, and Fernando Goglia
JOURNAL OF PROTEOME RESEARCH (2008) 7(07): 2872-2881
Plant proteomics
Sarnighausen E, Reski R.
Methods Mol Biol (2008) 484: 29-44
Staphylococcus aureus Clumping Factor A Binds to Complement Regulator Factor I and Increases Factor I Cleavage of C3b
Hair PS, Ward MD, Semmes OJ, Foster TJ, Cunnion KM.
J Infect Dis (2008) 198(1): 125-133
Protein expression in the nucleus accumbens of rats exposed to developmental vitamin D deficiency
McGrath J, Iwazaki T, Eyles D, Burne T, Cui X, Ko P, Matsumoto I.
PLoS ONE (2008) 3(6): e2383
Serological Proteomics of Gastritis: Degradation of Apolipoprotein A-I and Alpha1-Antitrypsin Is a Common Response to Inflammation Irrespective of Helicobacter pylori Infection
He QY, Yang H, Wong BC, Chiu JF.
Dig Dis Sci Early Edition: published 2-Jul-2008
A Proteomic Analysis of Vibrio cholerae in Human Stool
Larocque RC, Krastins B, Harris JB, Lebrun LM, Parker KC, Chase M, Ryan ET, Qadri F, Sarracino D, Calderwood SB.
Infect Immun Early Edition: published 30-Jun-2008
Recent advances in tumor markers of human hepatocellular carcinoma
Yoon SK.
Intervirology (2008) 51(Suppl 1): 34-41
Proteomics of grade three infiltrating ductal carcinoma in malaysian chinese breast cancer patients
Izani OM, M I A M, Singh M, S S, Liang S, Gam LH.
Biotechnol Appl Biochem Early Edition: published 13-Jun-2008
A proteomic study of the aortic media in human thoracic aortic dissection: implication for oxidative stress
Liao M, Liu Z, Bao J, Zhao Z, Hu J, Feng X, Feng R, Lu Q, Mei Z, Liu Y, Wu Q, Jing Z.
J Thorac Cardiovasc Surg (2008) 136(1): 65-72, 72.e1-3
Proteomic analysis of zygote and ookinete stages of the avian malaria parasite Plasmodium gallinaceum delineates the homologous proteomes of the lethal human malaria parasite Plasmodium falciparum
Kailash P. Patra, Jeff R. Johnson, Greg T. Cantin, John R. Yates III, Joseph M. Vinetz
PROTEOMICS (2008) 8(12): 2492-2499
Identification of proteomic biomarkers of preeclampsia in amniotic fluid using SELDI-TOF mass spectrometry
Park JS, Oh KJ, Norwitz ER, Han JS, Choi HJ, Seong HS, Kang YD, Park CW, Kim BJ, Jun JK, Syn HC.
Reprod Sci (2008) 15(5): 457-68
Increased concentration of neutrophil elastase in urine from patients with interstitial cystitis
Kuromitsu S, Yokota H, Hiramoto M, Morita S, Mita H, Yamada T.
Scand J Urol Nephrol Early Edition: published 30-Apr-2008
Comparative serum proteome expression of osteonecrosis of the femoral head in adults
Wu RW, Wang FS, Ko JY, Wang CJ, Wu SL.
Bone Early Edition: published 7-May-2008
Proteomic pattern of plasma in off-pump coronary artery bypass surgery
Silva J, López-Farré AJ, Mateos-Cáceres PJ, González A, Maroto L, Macaya C, RodrÃguez E.
Clin Chem Lab Med Early Edition: published 7-Jul-2008
Increased {alpha}-Defensins as a Blood Marker for Schizophrenia Susceptibility
Rachel M. Craddock, Jeffrey T. Huang, Edmund Jackson, Nathan Harris, E. Fuller Torrey, Marlis Herberth, and Sabine Bahn
Mol Cell Proteomics (2008) 7(7): 1204-1213
Alternative Splicing in Colon, Bladder, and Prostate Cancer Identified by Exon Array Analysis
Kasper Thorsen, Karina D. Sorensen, Anne Sofie Brems-Eskildsen, Charlotte Modin, Mette Gaustadnes, Anne-Mette K. Hein, Mogens Kruhoffer, Soren Laurberg, Michael Borre, Kai Wang, Soren Brunak, Adrian R. Krainer, Niels Torring, Lars Dyrskjot, Claus L. Andersen, and Torben F. Orntoft
Mol Cell Proteomics (2008) 7(7): 1214-1224
Comparison of Drug Distribution Images from Whole-Body Thin Tissue Sections Obtained Using Desorption Electrospray Ionization Tandem Mass Spectrometry and Autoradiography
Vilmos Kertesz, Gary J. Van Berkel, Marissa Vavrek, Kenneth A. Koeplinger, Bradley B. Schneider, and Thomas R. Covey
ANALYTICAL CHEMISTRY (2008) 80(13): 5168-5177
New biomarkers of Crohn's disease: serum biomarkers and development of diagnostic tools
Meuwis MA, Fillet M, Chapelle JP, Malaise M, Louis E, Merville MP.
Expert Rev Mol Diagn (2008) 8(3): 327-337
Is the failing heart out of fuel or a worn engine running rich? A study of mitochondria in old spontaneously hypertensive rats
Mia Jüllig, Anthony J. R. Hickey, Chau C. Chai, Gretchen L. Skea, Martin J. Middleditch, Silvana Costa, Soon Y. Choong, Anthony R. J. Philips, Garth J. S. Cooper
PROTEOMICS (2008) 8(12): 2556-2572
Reproducibility of proteomic profiles over 3 years in postmenopausal women not taking postmenopausal hormones
Tworoger SS, Spentzos D, Grall FT, Liebermann TA, Hankinson SE.
Cancer Epidemiol Biomarkers Prev (2008) 17(6): 1480-5
The application of proteomics to articular cartilage: A new hope for the treatment of osteoarthritis
De Ceuninck F.
Joint Bone Spine (2008) 75(4): 376-8
High throughput techniques for characterizing the expression profile of Barrett's esophagus
van Baal JW, Krishnadath KK.
Dis Esophagus Early Edition: published 17-Jun-2008
Influence of increased adiposity on mitochondrial-associated proteins of the rat colon: A proteomic and transcriptomic analysis
Padidar S, Farquharson AJ, Rucklidge GJ, Drew JE.
Biochim Biophys Acta Early Edition: published 13-Jun-2008
Proteomic Expression Analysis of Surgical Human Colorectal Cancer Tissues: Up-Regulation of PSB7, PRDX1, and SRP9 and Hypoxic Adaptation in Cancer
Jung-hyun Rho, Shuzhen Qin, Julia Y. Wang, and Michael H. A. Roehrl
JOURNAL OF PROTEOME RESEARCH (2008) 7(07): 2959-2972
Application of genomic and proteomic technologiesto early detection of cancer
M Ardekani A, Akhondi MM, Sadeghi MR.
Arch Iran Med (2008) 11(4): 427-34
Proteomic and oxidative stress analysis in human brain samples of Huntington disease
Sorolla MA, Reverter-Branchat G, Tamarit J, Ferrer I, Ros J, Cabiscol E.
Free Radic Biol Med Early Edition: published 28-May-2008
Sputum Proteomics in Inflammatory and Suppurative Respiratory Diseases
Gray RD, Macgregor G, Noble D, Imrie M, Dewar M, Boyd AC, Innes JA, Porteous DJ, Greening AP.
Am J Respir Crit Care Med Early Edition: published 19-Jun-2008
Human voltage-dependent anion selective channel 1 is a target antigen for antiglomerular endothelial cell antibody in mixed connective tissue disease
Kikuchi T, Yoshida Y, Morioka T, Gejyo F, Oite T.
Mod Rheumatol Early Edition: published 21-Jun-2008
Proteome Analysis of Chronically Inflamed Lungs in a Mouse Chronic Asthma Model
Wong WS, Zhao J.
Int Arch Allergy Immunol (2008) 147(3): 179-189
Using peripheral blood mononuclear cells to determine proteome profiles in human cardiac failure
Mazzola A, Cianti R, Bini L, Armini A, Eberini I, Pompella G, Capecchi PL, Natale M, Abbracchio MP, Laghi-Pasini F.
Eur J Heart Fail (2008) 10(8): 749-57
Identification of 5-fluorouracil response proteins in colorectal carcinoma cell line SW480 by two-dimensional electrophoresis and MALDI-TOF mass spectrometry
Wong CS, Wong VW, Chan CM, Ma BB, Hui EP, Wong MC, Lam MY, Au TC, Chan WH, Cheuk W, Chan AT.
Oncol Rep (2008) 20(1): 89-98
Proteomic analysis of amniotic fluid to identify women with preterm labor and intra-amniotic inflammation/infection: The use of a novel computational method to analyze mass spectrometric profiling
Romero R, Espinoza J, Rogers WT, Moser A, Kae Nien J, Pedro Kusanovic J, Gotsch F, Erez O, Gomez R, Edwin S, Hassan SS.
J Matern Fetal Neonatal Med (2008) 21(6): 367-87
Protein biomarker analysis by mass spectrometry in patients with rheumatoid arthritis receiving anti-tumor necrosis factor-alpha antibody therapy
Sekigawa I, Yanagida M, Iwabuchi K, Kaneda K, Kaneko H, Takasaki Y, Jung G, Sone S, Tanaka Y, Ogawa H, Takamori K.
Clin Exp Rheumatol (2008) 26(2): 261-267
Quantitative Proteomics of a Presymptomatic A53T {alpha}-Synuclein Drosophila Model of Parkinson Disease
Zhiyin Xun, Rena A. Sowell, Thomas C. Kaufman, and David E. Clemmer
Mol Cell Proteomics (2008) 7(7): 1191-1203
A Mouse to Human Search for Plasma Proteome Changes Associated with Pancreatic Tumor Development
Faca VM, Song KS, Wang H, Zhang Q, Krasnoselsky AL, Newcomb LF, Plentz RR, Gurumurthy S, Redston MS, Pitteri SJ, Pereira-Faca SR, Ireton RC, Katayama H, Glukhova V, Phanstiel D, Brenner DE, Anderson MA, Misek D, Scholler N, Urban ND, Barnett MJ, Edelstein C, Goodman GE, Thornquist MD, McIntosh MW, Depinho RA, Bardeesy N, Hanash SM.
PLoS Med (2008) 5(6): e123
Logical Analysis of Data (LAD) model for the early diagnosis of acute ischemic stroke
Reddy A, Wang H, Yu H, Bonates TO, Gulabani V, Azok J, Hoehn G, Hammer PL, Baird AE, Li KC.
BMC Med Inform Decis Mak (2008) 8(1): 30
Proteomic analysis of plasma from Portuguese patients with familial amyotrophic lateral sclerosis
Palma AS, De Carvalho M, Grammel N, Pinto S, Barata N, Conradt HS, Costa J.
Amyotroph Lateral Scler Early Edition: published 1-Apr-2008
Proteomics Analysis Identifies Molecular Targets Related to Diabetes Mellitus-associated Bladder Dysfunction
Elizabeth Yohannes, Jinsook Chang, George J. Christ, Kelvin P. Davies, and Mark R. Chance
Mol Cell Proteomics (2008) 7(7): 1270-1285
Proteomic analysis of ovarian cancer cells reveals dynamic processes of protein secretion and shedding of extra-cellular domains
Faça VM, Ventura AP, Fitzgibbon MP, Pereira-Faça SR, Pitteri SJ, Green AE, Ireton RC, Zhang Q, Wang H, O'Briant KC, Drescher CW, Schummer M, McIntosh MW, Knudsen BS, Hanash SM.
PLoS ONE (2008) 3(6): e2425
HIV-1-Infected Astrocytes and the Microglial Proteome
Wang T, Gong N, Liu J, Kadiu I, Kraft-Terry SD, Schlautman JD, Ciborowski P, Volsky DJ, Gendelman HE.
J Neuroimmune Pharmacol Early Edition: published 28-Jun-2008
Proteomic analysis of lamellar bodies isolated from rat lungs
Wang P, Chintagari NR, Narayanaperumal J, Ayalew S, Hartson S, Liu L.
BMC Cell Biol (2008) 9(1): 34
Analysis of the saliva proteome from patients with head and neck squamous cell carcinoma reveals differences in abundance levels of proteins associated with tumour progression and metastasis
Paul Dowling, Robert Wormald, Paula Meleady, Michael Henry, Aongus Curran, Martin Clynes
Journal of Proteomics (2008) 71(2): 168-175
Application of proteomics for the identification of differentially expressed protein markers for Down syndrome in maternal plasma
Kolialexi A, Tsangaris GT, Papantoniou N, Anagnostopoulos AK, Vougas K, Bagiokos V, Antsaklis A, Mavrou A.
Prenat Diagn Early Edition: published 13-Jun-2008
A proteomic study of the effects of ramipril on post-infarction left ventricular remodelling in the rabbit
Chen CY, Lee BC, Hsu HC, Lin HJ, Chao CL, Lin YH, Ho YL, Chen MF.
Eur J Heart Fail (2008) 10(8): 740-8
Proteomic surveillance of retinal autoantigens in endogenous uveitis: implication of esterase D and brain-type creatine kinase as novel autoantigens
Okunuki Y, Usui Y, Kezuka T, Hattori T, Masuko K, Nakamura H, Yudoh K, Goto H, Usui M, Nishioka K, Kato T, Takeuchi M.
Mol Vis (2008) 14: 1094-104.
Protein biochip array technology for cytokine profiling predicts etanercept responsiveness in rheumatoid arthritis
Fabre S, Dupuy AM, Dossat N, Guisset C, Cohen JD, Cristol JP, Daures JP, Jorgensen C.
Clin Exp Immunol Early Edition: published 10-Jun-2008
Detection of serum proteomic changes and discovery of serum biomarkers for Kashin-Beck disease using surface-enhanced laser desorption ionization mass spectrometry (SELDI-TOF MS)
Wang S, Guo X, Tan WH, Geng D, Deng BP, Wang CE, Qu X.
J Bone Miner Metab (2008) 26(4): 385-393
Discovery of altered protein profiles in epithelial ovarian carcinogenesis by SELDI mass spectrometry
Luo J, Qian JH, Yu JK, Zheng S, Xie X, Lu WG.
Eur J Gynaecol Oncol (2008) 29(3): 233-8
Vaccinia Peptides Eluted from HLA-DR1 Isolated from Virus-Infected Cells Are Recognized by CD4+ T Cells from a Vaccinated Donor
Iwona Strug, J. Mauricio Calvo-Calle, Karin M. Green, John Cruz, Francis A. Ennis, James E. Evans, and Lawrence J. Stern
JOURNAL OF PROTEOME RESEARCH (2008) 7(07): 2703-2711
Mass spectrometric and linear discriminant analysis of N-glycans of human serum alpha-1-acid glycoprotein in cancer patients and healthy individuals
Tímea Imre, Tibor Kremmer, Károly Héberger, Éva Molnár-Szöllosi, Krisztina Ludányi, Gabriella Pócsfalvi, Antonio Malorni, László Drahos, Károly Vékey
Journal of Proteomics (2008) 71(2): 186-197
Stress alters the cellular and proteomic compartments of bovine bronchoalveolar lavage fluid
Mitchell GB, Clark ME, Siwicky M, Caswell JL.
Vet Immunol Immunopathol Early Edition: published 14-May-2008
Quantification of Low-Picomolar Concentrations of TNF-α in Serum Using the Dual-Network Microfluidic ELISA Platform
Marc Herrmann, Teodor Veres, and Maryam Tabrizian
ANALYTICAL CHEMISTRY (2008) 80(13): 5160-5167
Proteomic analysis of exhaled breath condensate from single patients with pulmonary emphysema associated to [alpha]1-antitrypsin deficiency
Marco Fumagalli, Lorenzo Dolcini, Alberto Sala, Jan Stolk, Laura Fregonese, Fabio Ferrari, Simona Viglio, Maurizio Luisetti, Paolo Iadarola
Journal of Proteomics (2008) 71(2): 211-221
Biomarkers of lupus nephritis determined by serial urine proteomics
Zhang X, Jin M, Wu H, Nadasdy T, Nadasdy G, Harris N, Green-Church K, Nagaraja H, Birmingham DJ, Yu CY, Hebert LA, Rovin BH.
Kidney Int Early Edition: published 2-Jul-2008
Effect of duration of ischemia on myocardial proteome in ischemia/reperfusion injury
Justyna Fert-Bober, Rasphal S. Basran, Jolanta Sawicka, Grzegorz Sawicki
PROTEOMICS (2008) 8(12): 2543-2555
Mass spectrometry-based proteomics in reproductive medicine
Kolialexi A, Mavrou A, Spyrou G, Tsangaris GT.
Mass Spectrom Rev Early Edition: published 10-Jul-2008
Molecular analysis of nipple fluid for breast cancer screening
Suijkerbuijk KP, van der Wall E, Vooijs M, van Diest PJ.
Pathobiology (2008) 75(2): 149-52
Downregulation of two isoforms of ubiquitin carboxyl-terminal hydrolase isozyme L1 correlates with high metastatic potentials of human SN12C renal cell carcinoma cell clones
Toshiyuki Tanaka, Yasuhiro Kuramitsu, Masanori Fujimoto, Seiji Naito, Masaaki Oka, Kazuyuki Nakamura
ELECTROPHORESIS (2008) 29(12): 2651-2659
Proteomics Analysis in Post Transplant Lymphoproliferative Disorders (PTLD)
Alsayed Y, Leleu X, Leontovich A, Oton AB, Melhem M, George D, Ghobrial IM.
Eur J Haematol Early Edition: published 20-Jun-2008
Detection of citrullinated proteins in synovial fluids derived from patients with rheumatoid arthritis by proteomics-based analysis
Tabushi Y, Nakanishi T, Takeuchi T, Nakajima M, Ueda K, Kotani T, Makino S, Shimizu A, Hanafusa T, Takubo T.
Ann Clin Biochem (2008) 45(Pt 4): 413-7
Increase in Endoplasmic Reticulum (ER) Stress Related Proteins and Genes in Adipose Tissue of Obese, Insulin Resistant Individuals
Boden G, Duan X, Homko C, Molina EJ, Song W, Perez O, Cheung P, Merali S.
Diabetes Early Edition: published 20-Jun-2008
Lectin-based electrophoretic analysis of the expression of the 35 kDa inter-?-trypsin inhibitor heavy chain H4 fragment in sera of patients with five different malignancies
Emida Mohamed, Puteri Shafinaz Abdul-Rahman, Saeid Reza Doustjalali, Yeng Chen, Boon-Kiong Lim, Siti Zawiah Omar, Anita Zarina Bustam, Vivek Ajit Singh, Nur Aishah Mohd-Taib, Cheng-Har Yip, Onn Haji Hashim
ELECTROPHORESIS (2008) 29(12): 2645-2650
Proteomic analysis of cardiac metabolic enzymes in asphyxiated newborn piglets
Fert-Bober J, Sawicki G, Lopaschuk GD, Cheung PY.
Mol Cell Biochem Early Edition: published 8-Jul-2008
Proteomic profiling of urine for the detection of colon cancer
Ward DG, Nyangoma S, Howard J, Emma H, Wei W, Tselepis C, Steven N, Wakelam MJ, Johnson PJ, Ismail T, Martin A.
Proteome Science (2008) 6(1): 19
Discovery and Verification of Head-and-neck Cancer Biomarkers by Differential Protein Expression Analysis Using iTRAQ Labeling, Multidimensional Liquid Chromatography, and Tandem Mass Spectrometry
Ranju Ralhan, Leroi V. DeSouza, Ajay Matta, Satyendra Chandra Tripathi, Shaun Ghanny, Siddartha Datta Gupta, Sudhir Bahadur, and K. W. Michael Siu
Mol Cell Proteomics (2008) 7(6): 1162-1173
Changes of the Hepatic Proteome in Hepatitis B-Infected Mouse Model at Early Stages of Fibrosis
Daniela Spano, Flora Cimmino, Mario Capasso, Fulvio D’Angelo, Nicola Zambrano, Luigi Terracciano, and Achille Iolascon
JOURNAL OF PROTEOME RESEARCH (2008) 7(07): 2642-2653
Identification of pathways associated with invasive behavior by ovarian cancer cells using multidimensional protein identification technology (MudPIT)
Sodek KL, Evangelou AI, Ignatchenko A, Agochiya M, Brown TJ, Ringuette MJ, Jurisica I, Kislinger T.
Mol Biosyst (2008) 4(7): 762-73
The expression of tomato prosystemin gene in tobacco plants highly affects host proteomic repertoire
Mariapina Rocco, Giandomenico Corrado, Simona Arena, Chiara D'Ambrosio, Claudia Tortiglione, Stefano Sellaroli, Mauro Marra, Rosa Rao, Andrea Scaloni
Journal of Proteomics (2008) 71(2): 176-185
Lectin-based proteomic profiling of aged skeletal muscle: Decreased pyruvate kinase isozyme M1 exhibits drastically increased levels of N-glycosylation
O'Connell K, Doran P, Gannon J, Ohlendieck K.
Eur J Cell Biol Early Edition: published 3-Jul-2008
Large-scale quantitative LC-MS/MS analysis of detergent-resistant membrane proteins from rat renal collecting duct
Yu MJ, Pisitkun T, Wang G, Aranda JF, Gonzales PA, Tchapyjnikov D, Shen RF, Alonso MA, Knepper MA.
Am J Physiol Cell Physiol Early Edition: published 2-Jul-2008
Label-Free Proteomics of Serum
Govorukhina N, Horvatovich P, Bischoff R.
Methods Mol Biol (2008) 484: 67-77
A central resource for platelet proteomics
Cagney G, McRedmond J.
Arterioscler Thromb Vasc Biol (2008) 28(7): 1214-5
A proteomic analysis of rice seedlings responding to 1,2,4-trichlorobenzene stress
Ge C, Wan D, Wang Z, Ding Y, Wang Y, Shang Q, Ma F, Luo S.
J Environ Sci (China) (2008) 20(3): 309-19
Differences in the protein expression in limbal versus central human corneal epithelium - a search for stem cell markers
Lyngholm M, Vorum H, Nielsen K, Ostergaard M, Honoré B, Ehlers N.
Exp Eye Res Early Edition: published 10-May-2008
Proteomic analysis of human bone marrow mesenchymal stem cells transduced with human telomerase reverse transcriptase gene during proliferation
Huang GP, Pan ZJ, Huang JP, Yang JF, Guo CJ, Wang YG, Zheng Q, Chen R, Xu YL, Wang GZ, Xi YM, Shen D, Jin J, Wang JF.
Cell Prolif Early Edition: published 19-Jun-2008
Massive peptide sharing between viral and human proteomes
Kanduc D, Stufano A, Lucchese G, Kusalik A.
Peptides Early Edition: published 5-Jun-2008
Methods for human CD8(+) T lymphocyte proteome analysis
Thadikkaran L, Rufer N, Benay C, Crettaz D, Tissot JD.
Methods Mol Biol (2008) 484: 45-65
Leishmania infantum: tuning digitonin fractionation for comparative proteomic of the mitochondrial protein content
Hide M, Ritleng AS, Brizard JP, Monte-Allegre A, Sereno D.
Parasitol Res Early Edition: published 25-Jun-2008
Application of capillary isotachophoresis-based multidimensional separations coupled with electrospray ionization-tandem mass spectrometry for characterization of mouse brain mitochondrial proteome
Xueping Fang, Weijie Wang, Li Yang, Krish Chandrasekaran, Tibor Kristian, Brian M. Balgley, Cheng S. Lee
ELECTROPHORESIS (2008) 29(10): 2215-2223
Bovine viral diarrhea viruses differentially alter the expression of the protein kinases and related proteins affecting the development of infection and anti-viral mechanisms in bovine monocytes
Pinchuk GV, Lee SR, Nanduri B, Honsinger KL, Stokes JV, Pinchuk LM.
Biochim Biophys Acta Early Edition: published 23-May-2008
Assessing CMT cell line stability by two dimensional polyacrylamide gel electrophoresis and mass spectrometry based proteome analysis
Kelan Zhang, Krzysztof Wrzesinski, Stephen J. Fey, Peter Mose Larsen, Xumin Zhang, Peter Roepstorff
Journal of Proteomics (2008) 71(2): 160-167
Optimizing protein extraction from plant tissues for enhanced proteomics analysis
Wang W, Tai F, Chen S.
J Sep Sci (2008) 31(11): 2032-2039
Phosphoproteomic analysis of aged skeletal muscle
Gannon J, Staunton L, O'Connell K, Doran P, Ohlendieck K.
Int J Mol Med (2008) 22(1): 33-42
Free-flow electrophoresis of the human urinary proteome
Nissum M, Wildgruber R.
Methods Mol Biol (2008) 484: 131-44
Metabolic and proteomic study of NS0 myeloma cell line following the adaptation to protein-free medium
K.R. de la Luz-Hernández, L. Rojas-del Calvo, Y. Rabasa-Legón, A. Lage-Castellanos, A. Castillo-Vitlloch, J. Díaz, S. Gaskell
Journal of Proteomics (2008) 71(2): 133-147
The brain proteome profile is highly conserved between Prnp-/- and Prnp+/+ mice
Crecelius AC, Helmstetter D, Strangmann J, Mitteregger G, Fröhlich T, Arnold GJ, Kretzschmar HA.
Neuroreport (2008) 19(10): 1027-31
Proteome-wide characterization of seed aging in Arabidopsis. A comparison between artificial and natural aging protocols
Rajjou L, Lovigny Y, Groot SP, Belghazi M, Job C, Job D.
Plant Physiol Early Edition: published 3-Jul-2008
The effect of the bacterial effector protein harpin on transcriptional profile and mitochondrial proteins of Arabidopsis thaliana
Maren Livaja, M. Cristina Palmieri, Uta von Rad, Jörg Durner
Journal of Proteomics (2008) 71(2): 148-159
Comparative proteomics of chloroplasts envelopes from C3 and C4 plants reveals specific adaptations of the plastid envelope to C4 photosynthesis and candidate proteins required for maintaining C4 metabolite fluxes
Brautigam A, Hofmann-Benning S, Weber AP.
Plant Physiol Early Edition: published 3-Jul-2008
In-Depth Investigation of Soybean Seed-Filling Proteome and Comparison with a Parallel Study of Rapeseed
Agrawal GK, Hajduch M, Graham K, Thelen JJ.
Plant Physiol Early Edition: published 3-Jul-2008
Plant proteomics
Sarnighausen E, Reski R.
Methods Mol Biol (2008) 484: 29-44
Sperm membrane physiology and relevance for fertilization
Gadella BM.
Anim Reprod Sci Early Edition: published 14-May-2008
Plasmodium yoelii: Novel rhoptry proteins identified within the body of merozoite rhoptries in rodent Plasmodium malaria
Sam-Yellowe TY, Banks TL, Fujioka H, Drazba JA, Yadav SP.
Exp Parasitol Early Edition: published 27-May-2008
Proteomic Profile of Dormant Trichophyton Rubrum Conidia
Leng W, Liu T, Li R, Yang J, Wei C, Zhang W, Jin Q.
BMC Genomics (2008) 9(1): 303
Enhanced tolerance to oxidative stress in transgenic Arabidopsis thaliana plants expressing proteins of unknown function
Luhua S, Ciftci-Yilmaz S, Harper J, Cushman J, Mittler R.
Plant Physiol Early Edition: published 9-Jul-2008
Assessment and improvement of the Plasmodium yoelii yoelii genome annotation through comparative analysis
Ashley Vaughan, Sum-Ying Chiu, Gowthaman Ramasamy, Ling Li, Malcolm J. Gardner, Alice S. Tarun, Stefan H.I. Kappe, and Xinxia Peng
Bioinformatics (2008) 24(13): i383-i389
Comparative Proteomic Analysis of Extracellular Proteins Reveals Secretion of T-Kininogen from Vascular Smooth Muscle Cells in Response to Incubation with S-Enantiomer of Propranolol
Sui J, Zhang J, Ching CB, Chen WN.
Mol Pharm Early Edition: published 19-Jun-2008
Plant proteomics: Concepts, applications, and novel strategies for data interpretation
Baginsky S.
Mass Spectrom Rev Early Edition: published 10-Jul-2008
Top-Down Identification and Quantification of Stable Isotope Labeled Proteins from Aspergillus flavus Using Online Nano-Flow Reversed-Phase Liquid Chromatography Coupled to a LTQ-FTICR Mass Spectrometer
Timothy S. Collier, Adam M. Hawkridge, D. Ryan Georgianna, Gary A. Payne, and David C. Muddiman
ANALYTICAL CHEMISTRY (2008) 80(13): 4994-5001
Protein-based stable isotope probing (Protein-SIP) reveals active species within anoxic mixed cultures
Jehmlich N, Schmidt F, von Bergen M, Richnow HH, Vogt C.
ISME J Early Edition: published 19-Jun-2008
Comparative study on sugars fermentation and protein expression patterns of two Lactobacillus plantarum strains grown in three different media
Plumed-Ferrer C, Koistinen KM, Tolonen TL, Lehesranta SJ, Kärenlampi SO, Mäkimattila E, Joutsjoki V, Virtanen V, von Wright A.
Appl Environ Microbiol Early Edition: published 20-Jun-2008
Genomic and proteomic analysis of the Alkali-Tolerance Response (AlTR) in Listeria monocytogenes 10403S
Giotis ES, Muthaiyan A, Blair IS, Wilkinson BJ, McDowell DA.
BMC Microbiol (2008) 8(1): 102
Affinity Capture of Uropathogenic Escherichia coli Using Pigeon Ovalbumin-Bound Fe3O4@Al2O3 Magnetic Nanoparticles
Jr-Chi Liu, Pei-Jane Tsai, Yuan C. Lee, and Yu-Chie Chen
ANALYTICAL CHEMISTRY (2008) 80(14): 5425-5432
MALDI-TOF mass spectrometry as a tool for differentiation of invasive and noninvasive Streptococcus pyogenes isolates
Moura H, Woolfitt AR, Carvalho MG, Pavlopoulos A, Teixeira LM, Satten GA, Barr JR.
FEMS Immunol Med Microbiol Early Edition: published 3-Jun-2008
Proteomic analysis of exoproteins expressed by enterotoxigenic Staphylococcus aureus strains
Gabriella Pocsfalvi, Giuseppina Cacace, Manuela Cuccurullo, Giovanna Serluca, Alida Sorrentino, Gitta Schlosser, Giuseppe Blaiotta, Antonio Malorni
PROTEOMICS (2008) 8(12): 2462-2476
Proteomic Insights into Helicobacter pylori Coccoid Forms Under Oxidative Stress
Zeng H, Guo G, Mao XH, De Tong W, Zou QM.
Curr Microbiol Early Edition: published 28-Jun-2008
Comparative proteome analysis of secreted proteins of Streptococcus suis serotype 9 isolates from diseased and healthy pigs
Wu Z, Zhang W, Lu C.
Microb Pathog Early Edition: published 9-May-2008
Proteomic analysis of Helicobacter pylori cellular proteins fractionated by ammonium sulfate precipitation
Park JW, Lee SG, Song JY, Joo JS, Chung MJ, Kim SC, Youn HS, Kang HL, Baik SC, Lee WK, Cho MJ, Rhee KH.
Electrophoresis (2008) 29(13): 2891-903
Experimental setups and considerations to study microbial interactions
Melin P.
Methods Mol Biol (2008) 484: 17-26
Immunoproteomic assay of extracellular proteins in Streptococcus equi ssp. zooepidemicus
Mao Y, Fan H, Lu C.
FEMS Microbiol Lett Early Edition: published 27-Jun-2008
High accuracy mass spectrometry analysis as a tool to verify and improve gene annotation using Mycobacterium tuberculosis as an example
de Souza GA, Malen H, Softeland T, Salensminde G, Prasad S, Jonassen I, Wiker HG.
BMC Genomics (2008) 9(1): 316
The changes of proteomes components of Helicobacter pylori in response to acid stress without urea
Shao C, Zhang Q, Tang W, Qu W, Zhou Y, Sun Y, Yu H, Jia J.
J Microbiol (2008) 46(3): 331-7
The recovery of Mycobacterium avium subspecies paratuberculosis from the intestine of infected ruminants for proteomic evaluation
Egan S, Lanigan M, Shiell B, Beddome G, Stewart D, Vaughan J, Michalski WP.
J Microbiol Methods Early Edition: published 14-May-2008
Proteomics of marine bacteria
Thomas Schweder, Stephanie Markert, Michael Hecker
ELECTROPHORESIS (2008) 29(12): 2603-2616
Proteomics as a tool to investigate cell models for dopamine toxicity
Fasano M, Alberio T, Colapinto M, Mila S, Lopiano L.
Parkinsonism Relat Disord Early Edition: published 26-Jun-2008
Induction of Apoptosis in Jeko-1 Mantle Cell Lymphoma Cell Line by Resveratrol: A Proteomic Analysis
Daniela Cecconi, Alberto Zamò, Alice Parisi, Elena Bianchi, Claudia Parolini, Anna Maria Timperio, Lello Zolla, and Marco Chilosi
JOURNAL OF PROTEOME RESEARCH (2008) 7(07): 2670-2680
Proteomic analysis of chromium cytotoxicity in cultured rat lung epithelial cells
Ting Lei, Qing-Yu He, Zhen Cai, Yuan Zhou, Yi-Li Wang, Lu-Sheng Si, Zongwei Cai, Jen-Fu Chiu
PROTEOMICS (2008) 8(12): 2420-2429
Proteomic Analysis Identifies Protein Targets Responsible for Depsipeptide Sensitivity in Tumor Cells
Guozhu Chen, Ailing Li, Ming Zhao, Ying Gao, Tao Zhou, Yuanji Xu, Zhiyan Du, Xuemin Zhang, and Xiaodan Yu
JOURNAL OF PROTEOME RESEARCH (2008) 7(07): 2733-2742
Comparative Proteomics Analysis of Vascular Smooth Muscle Cells Incubated with S- and R-Enantiomers of Atenolol Using iTRAQ-coupled Two-dimensional LC-MS/MS
Jianjun Sui, Jianhua Zhang, Tuan Lin Tan, Chi Bun Ching, and Wei Ning Chen
Mol Cell Proteomics (2008) 7(6): 1007-1018
Proteomic Analysis of Different Temporal Expression Patterns Induced by N-Methyl-N′-nitro-N-nitrosoguanidine Treatment
Jing Shen, Wenzhang Chen, Xuefeng Yin, and Yingnian Yu
JOURNAL OF PROTEOME RESEARCH (2008) 7(07): 2999-3009
Proteomic analysis of an imatinib-resistant K562 cell line highlights opposing roles of heat shock cognate 70 and heat shock 70 proteins in resistance
Marion Pocaly, Valérie Lagarde, Gabriel Etienne, Maryse Dupouy, Delphine Lapaillerie, Stéphane Claverol, Sébastien Vilain, Marc Bonneu, Béatrice Turcq, François-Xavier Mahon, Jean-Max Pasquet
PROTEOMICS (2008) 8(12): 2394-2406
An Unbiased Evaluation of CK2 Inhibitors by Chemoproteomics: Characterization of Inhibitor Effects on CK2 and Identification of Novel Inhibitor Targets
James S. Duncan, Laszlo Gyenis, John Lenehan, Maria Bretner, Lee M. Graves, Timothy A. Haystead, and David W. Litchfield
Mol Cell Proteomics (2008) 7(6): 1077-1088
A proteomic investigation of similarities between conventional and herbal antidepressant treatments
Pennington K, Föcking M, McManus CA, Pariante CM, Dunn MJ, Cotter DR.
J Psychopharmacol Early Edition: published 18-Jun-2008
Quantitative and Temporal Proteome Analysis of Butyrate-treated Colorectal Cancer Cells
Hwee Tong Tan, Sandra Tan, Qingsong Lin, Teck Kwang Lim, Choy Leong Hew, and Maxey C. M. Chung
Mol Cell Proteomics (2008) 7(6): 1174-1185
Comparative Proteomic Analysis of Extracellular Proteins Reveals Secretion of T-Kininogen from Vascular Smooth Muscle Cells in Response to Incubation with S-Enantiomer of Propranolol
Sui J, Zhang J, Ching CB, Chen WN.
Mol Pharm Early Edition: published 19-Jun-2008
Antibody Microarray Analyses of Signal Transduction Protein Expression and Phosphorylation during Porcine Oocyte Maturation
Steven Pelech, Lucie Jelinkova, Andrej Susor, Hong Zhang, Xiaoqing Shi, Antonin Pavlok, Michal Kubelka, and Hana Kovarova
JOURNAL OF PROTEOME RESEARCH (2008) 7(07): 2860-2871
Small-molecule microarrays as tools in ligand discovery
Vegas AJ, Fuller JH, Koehler AN.
Chem Soc Rev (2008) 37(7): 1385-94
Protein reactions with surface-bound molecular targets detected by oblique-incidence reflectivity difference microscopes
Landry JP, Sun YS, Guo XW, Zhu XD.
Appl Opt (2008) 47(18): 3275-88
Proteomes take the electrophilic bait
Kodadek T.
Nat Chem Biol (2008) 4(7): 387-8
Reproducibility of proteomic profiles over 3 years in postmenopausal women not taking postmenopausal hormones
Tworoger SS, Spentzos D, Grall FT, Liebermann TA, Hankinson SE.
Cancer Epidemiol Biomarkers Prev (2008) 17(6): 1480-5
Antibody technology in proteomics
Saerens D, Ghassabeh GH, Muyldermans S.
Brief Funct Genomic Proteomic Early Edition: published 27-Jun-2008
Protein biochip array technology for cytokine profiling predicts etanercept responsiveness in rheumatoid arthritis
Fabre S, Dupuy AM, Dossat N, Guisset C, Cohen JD, Cristol JP, Daures JP, Jorgensen C.
Clin Exp Immunol Early Edition: published 10-Jun-2008
Blocking and detection chemistries affect antibody performance on reverse phase protein arrays
Kristi L. H. Ambroz, Yonghong Zhang, Amy Schutz-Geschwender, D. Michael Olive
PROTEOMICS (2008) 8(12): 2379-2383
Large-scale study of phosphoproteins involved in long-term potentiation in the rat dentate gyrus in vivo
Chardonnet S, Le Marechal P, Cheval H, Le Caer JP, Decottignies P, Laprevote O, Laroche S, Davis S.
Eur J Neurosci (2008) 27(11): 2985-98
Comparative conservation analysis of the human mitotic phosphoproteome
Rainer Malik, Erich A. Nigg, and Roman Korner
Bioinformatics (2008) 24(12): 1426-1432
Glycosylation analysis of glycoproteins and proteoglycans using capillary electrophoresis-mass spectrometry strategies
Sabine Amon, Alina D. Zamfir, Andreas Rizzi
ELECTROPHORESIS (2008) 29(12): 2485-2507
Phosphoprotein Profiling by PA-GeLC−MS/MS
Kolbrun Kristjansdottir, Donald Wolfgeher, Nick Lucius, David Sigfredo Angulo, and Stephen J. Kron
JOURNAL OF PROTEOME RESEARCH (2008) 7(07): 2812-2824
Capillary isoelectric focusing hyphenated to single- and multistage matrix-assisted laser desorption/ionization-mass spectrometry using automated sheath-flow-assisted sample deposition
Michael Lechner, Alexandra Seifner, Andreas M. Rizzi
ELECTROPHORESIS (2008) 29(10): 1974-1984
Quantitative Derivatization of Sialic Acids for the Detection of Sialoglycans by MALDI MS
Masaaki Toyoda, Hiromi Ito, Yu-ki Matsuno, Hisashi Narimatsu, and Akihiko Kameyama
ANALYTICAL CHEMISTRY (2008) 80(13): 5211-5218
Immunoaffinity Enrichments Followed by Mass Spectrometric Detection for Studying Global Protein Tyrosine Phosphorylation
Sara Bergström Lind, Magnus Molin, Mikhail M. Savitski, Lina Emilsson, Jonas Åström, Ludwig Hedberg, Chris Adams, Michael L. Nielsen, Åke Engström, Lioudmila Elfineh, Eva Andersson, Roman A. Zubarev, and Ulf Pettersson
JOURNAL OF PROTEOME RESEARCH (2008) 7(07): 2897-2910
DNA Separation Methodology Based on Charge Neutralization in a Polycationic Gel Matrix
Gleb Zilberstein, Leonid Korol, Joanna Znaleziona, Roberto Sebastiano, Pier Giorgio Righetti, Ilya Shlar, Emmanuil Baskin, and Shmuel Bukshpan
ANALYTICAL CHEMISTRY (2008) 80(13): 5031-5035
Identification and characterization of N-glycosylated proteins using proteomics
Selby DS, Larsen MR, Calvano CD, Jensen ON.
Methods Mol Biol (2008) 484: 263-76
Capture of phosphopeptides using alpha-zirconium phosphate nanoplatelets
Xu S, Whitin JC, Yu TT, Zhou H, Sun D, Sue HJ, Zou H, Cohen HJ, Zare RN
Anal Chem (2008) 80(14): 5542-9
Chapter 21 nitric oxide and cardiobiology-methods for intact hearts and isolated myocytes
Hare JM, Beigi F, Tziomalos K.
Methods Enzymol (2008) 441: 369-92
Serial protein labeling with infrared maleimide dyes to identify cysteine modifications
Irène M. Riederer, Rosario Moreno Herrero, Geneviève Leuba, Beat M. Riederer
Journal of Proteomics (2008) 71(2): 222-230
Analysis of histones, histone variants, and their post-translationally modified forms
Herbert H. Lindner
ELECTROPHORESIS (2008) 29(12): 2516-2532
Identification of proteins based on MS/MS spectra and location of posttranslational modifications
Stone KL, Crawford M, McMurray W, Williams N, Williams KR.
Methods Mol Biol (2007) 386: 57-77
Comprehensive Comparison of Collision Induced Dissociation and Electron Transfer Dissociation
Henrik Molina, Rune Matthiesen, Kumaran Kandasamy, and Akhilesh Pandey
ANALYTICAL CHEMISTRY (2008) 80(13): 4825-4835
Towards Liquid Chromatography Time-Scale Peptide Sequencing and Characterization of Post-Translational Modifications in the Negative-Ion Mode Using Electron Detachment Dissociation Tandem Mass Spectrometry
Kjeldsen F, Hørning OB, Jensen SS, Giessing AM, Jensen ON.
J Am Soc Mass Spectrom Early Edition: published 3-May-2008
The Mannose 6-Phosphate Glycoprotein Proteome
David E. Sleat, Maria Cecilia Della Valle, Haiyan Zheng, Dirk F. Moore, and Peter Lobel
JOURNAL OF PROTEOME RESEARCH (2008) 7(07): 3010-3021
Protease-catalysed protein splicing: a new post-translational modification?
Saska I, Craik DJ.
Trends Biochem Sci Early Edition: published 1-Jul-2008
The role of post-translational modifications for learning and memory formation
Berta Sunyer, Weifei Diao, Gert Lubec
ELECTROPHORESIS (2008) 29(12): 2593-2602
Protein arginine methylation in health and disease
Aletta JM, Hu JC.
Biotechnol Annu Rev (2008) 14: 203-24
Quantitative Comparison of Sarcomeric Phospho-Proteomes of Neonatal and Adult Rat Hearts
Yuan C, Sheng Q, Tang H, Li Y, Zeng R, Solaro RJ.
Am J Physiol Heart Circ Physiol Early Edition: published 13-Jun-2008
Lectin-based proteomic profiling of aged skeletal muscle: Decreased pyruvate kinase isozyme M1 exhibits drastically increased levels of N-glycosylation
O'Connell K, Doran P, Gannon J, Ohlendieck K.
Eur J Cell Biol Early Edition: published 3-Jul-2008
A proteomic and phosphoproteomic analysis of Oryza sativa plasma membrane and vacuolar membrane
Whiteman SA, Nühse TS, Ashford DA, Sanders D, Maathuis FJ.
Plant J Early Edition: published 13-Jun-2008
A Multidimensional Chromatography Technology for In-depth Phosphoproteome Analysis
Claudio P. Albuquerque, Marcus B. Smolka, Samuel H. Payne, Vineet Bafna, Jimmy Eng, and Huilin Zhou
Mol Cell Proteomics (2008) 7(7): 1389-1396
Phosphoproteomic Analysis of the Mouse Brain Cytosol Reveals a Predominance of Protein Phosphorylation in Regions of Intrinsic Sequence Disorder
Mark O. Collins, Lu Yu, Iain Campuzano, Seth G. N. Grant, and Jyoti S. Choudhary
Mol Cell Proteomics (2008) 7(7): 1331-1348
Immonium Ion Scanning for the Discovery of Post-Translational Modifications and Its Application to Histones
Timothy A. Couttas, Mark J. Raftery, Giulia Bernardini, and Marc R. Wilkins
JOURNAL OF PROTEOME RESEARCH (2008) 7(07): 2632-2641
Post-translational modification of proteins during intermittent hypoxia
Kumar GK, Prabhakar NR.
Respir Physiol Neurobiol Early Edition: published 4-Jul-2008
Phosphoproteomic Analysis of Human Brain by Calcium Phosphate Precipitation and Mass Spectrometry
Qiangwei Xia, Dongmei Cheng, Duc M. Duong, Marla Gearing, James J. Lah, Allan I. Levey, and Junmin Peng
JOURNAL OF PROTEOME RESEARCH (2008) 7(07): 2845-2851
Chapter 1 protein 3-nitrotyrosine in complex biological samples: quantification by high-pressure liquid chromatography/electrochemical detection and emergence of proteomic approaches for unbiased identification of modification sites
Nuriel T, Deeb RS, Hajjar DP, Gross SS.
Methods Enzymol (2008) 441: 1-17
Phosphoproteomic analysis of aged skeletal muscle
Gannon J, Staunton L, O'Connell K, Doran P, Ohlendieck K.
Int J Mol Med (2008) 22(1): 33-42
Bimolecular fluorescence complementation (BiFC) analysis of protein interactions in Caenorhabditis elegans
Hiatt SM, Shyu YJ, Duren HM, Hu CD.
Methods Early Edition: published 26-Jun-2008
Monitoring Protein-Protein Interactions between the Mammalian Integral Membrane Transporters and PDZ-interacting Partners Using a Modified Split-ubiquitin Membrane Yeast Two-hybrid System
Serge M. Gisler, Saranya Kittanakom, Daniel Fuster, Victoria Wong, Mia Bertic, Tamara Radanovic, Randy A. Hall, Heini Murer, Jurg Biber, Daniel Markovich, Orson W. Moe, and Igor Stagljar
Mol Cell Proteomics (2008) 7(7): 1362-1377
Preparative isolation of protein complexes and other bioparticles by elution from polyacrylamide gels
Holger Seelert, Frank Krause
ELECTROPHORESIS (2008) 29(12): 2617-2636
A Bayesian estimator of protein-protein association probabilities
Jason M. Gilmore, Deanna L. Auberry, Julia L. Sharp, Amanda M. White, Kevin K. Anderson, and Don S. Daly
Bioinformatics (2008) 24(13): 1554-1555
Identification of Novel RasGRF1 Interacting Partners by Large-Scale Proteomic Analysis
Lavagni P, Indrigo M, Colombo G, Martegani E, Rosenblum K, Gnesutta N, Zippel R.
J Mol Neurosci Early Edition: published 8-Jul-2008
Mining of Caspase-7 Substrates Using a Degradomic Approach
Jang M, Park BC, Kang S, Lee DH, Cho S, Lee SC, Bae KH, Park SG.
Mol Cells Early Edition: published 3-Jul-2008
Chromogenic Cross-Linker for the Characterization of Protein Structure by Infrared Multiphoton Dissociation Mass Spectrometry
Myles W. Gardner, Lisa A. Vasicek, Shagufta Shabbir, Eric V. Anslyn, and Jennifer S. Brodbelt
ANALYTICAL CHEMISTRY (2008) 80(13): 4807-4819
High confidence determination of specific protein-protein interactions using quantitative mass spectrometry
Vermeulen M, Hubner NC, Mann M.
Curr Opin Biotechnol Early Edition: published 27-Jun-2008
Mapping of signaling pathways by functional interaction proteomics
Kriegsheim A, Preisinger C, Kolch W.
Methods Mol Biol (2008) 484: 177-92
Small-molecule microarrays as tools in ligand discovery
Vegas AJ, Fuller JH, Koehler AN.
Chem Soc Rev (2008) 37(7): 1385-94
Mapping multiprotein complexes by affinity purification and mass spectrometry
Collins MO, Choudhary JS.
Curr Opin Biotechnol Early Edition: published 30-Jun-2008
Versatile screening for binary protein-protein interactions by yeast two-hybrid mating
Letteboer SJ, Roepman R.
Methods Mol Biol (2008) 484: 145-59
The social network of a cell: Recent advances in interactome mapping
Charbonnier S, Gallego O, Gavin AC.
Biotechnol Annu Rev (2008) 14: 1-28
Hydroponic isotope labelling of entire plants (HILEP) for quantitative plant proteomics; an oxidative stress case study
Bindschedler LV, Palmblad M, Cramer R.
Phytochemistry (2008) 69(10): 1962-72
18O Labeling over a Coffee Break: A Rapid Strategy for Quantitative Proteomics
Shama P. Mirza, Andrew S. Greene, and Michael Olivier
JOURNAL OF PROTEOME RESEARCH (2008) 7(07): 3042-3048
Chapter 1 protein 3-nitrotyrosine in complex biological samples: quantification by high-pressure liquid chromatography/electrochemical detection and emergence of proteomic approaches for unbiased identification of modification sites
Nuriel T, Deeb RS, Hajjar DP, Gross SS.
Methods Enzymol (2008) 441: 1-17
Chapter 2 selective fluorogenic derivatization of 3-nitrotyrosine and 3,4-dihydroxyphenylalanine in peptides: a method designed for quantitative proteomic analysis
Sharov VS, Dremina ES, Pennington J, Killmer J, Asmus C, Thorson M, Hong SJ, Li X, Stobaugh JF, Schöneich C.
Methods Enzymol (2008) 441: 19-32
Stable Isotopic Labeling by Amino Acids in Cultured Primary Neurons: Application to Brain-derived Neurotrophic Factor-dependent Phosphotyrosine-associated Signaling
Daniel S. Spellman, Katrin Deinhardt, Costel C. Darie, Moses V. Chao, and Thomas A. Neubert
Mol Cell Proteomics (2008) 7(6): 1067-1076
Discrimination between stable and dynamic components of protein complexes by means of quantitative proteomics
Keiji Kito, Noriko Kawaguchi, Satoshi Okada, Takashi Ito
PROTEOMICS (2008) 8(12): 2366-2370
Top-Down Identification and Quantification of Stable Isotope Labeled Proteins from Aspergillus flavus Using Online Nano-Flow Reversed-Phase Liquid Chromatography Coupled to a LTQ-FTICR Mass Spectrometer
Timothy S. Collier, Adam M. Hawkridge, D. Ryan Georgianna, Gary A. Payne, and David C. Muddiman
ANALYTICAL CHEMISTRY (2008) 80(13): 4994-5001
iTRAQ Experimental Design for Plasma Biomarker Discovery
Xiaomin Song, Julia Bandow, Jamie Sherman, J. David Baker, Paul W. Brown, Michael T. McDowell, and Mark P. Molloy
JOURNAL OF PROTEOME RESEARCH (2008) 7(07): 2952-2958
Label-free mass spectrometry-based protein quantification technologies in proteomic analysis
Wang M, You J, Bemis KG, Tegeler TJ, Brown DP.
Brief Funct Genomic Proteomic Early Edition: published 25-Jun-2008
Metabolic and proteomic study of NS0 myeloma cell line following the adaptation to protein-free medium
K.R. de la Luz-Hernández, L. Rojas-del Calvo, Y. Rabasa-Legón, A. Lage-Castellanos, A. Castillo-Vitlloch, J. Díaz, S. Gaskell
Journal of Proteomics (2008) 71(2): 133-147
Temperature-Dependent Regulation of Proteins in Aspergillus flavus: Whole Organism Stable Isotope Labeling by Amino Acids
D. Ryan Georgianna, Adam M. Hawkridge, David C. Muddiman, and Gary A. Payne
JOURNAL OF PROTEOME RESEARCH (2008) 7(07): 2973-2979
Quantitative Comparison of Sarcomeric Phospho-Proteomes of Neonatal and Adult Rat Hearts
Yuan C, Sheng Q, Tang H, Li Y, Zeng R, Solaro RJ.
Am J Physiol Heart Circ Physiol Early Edition: published 13-Jun-2008