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SPS' DigestIssue 54, 8-Sep-2008 |
Gain and loss of phosphorylation sites in human cancer
Predrag Radivojac, Peter H. Baenziger, Maricel G. Kann, Matthew E. Mort, Matthew W. Hahn, and Sean D. Mooney
Bioinformatics (2008) 24(16): i241-i247
Clinical mass spectrometry proteomic diagnosis by conformal predictors
Gammerman A, Nouretdinov I, Burford B, Chervonenkis A, Vovk V, Luo Z.
Stat Appl Genet Mol Biol (2008) 7(2): Article13
Connect the dots: exposing hidden protein family connections from the entire sequence tree
Yaniv Loewenstein and Michal Linial
Bioinformatics (2008) 24(16): i193-i199
Towards de novo identification of metabolites by analyzing tandem mass spectra
Sebastian Bocker and Florian Rasche
Bioinformatics (2008) 24(16): i49-i55
Prediction of disordered regions in proteins based on the meta approach
Takashi Ishida and Kengo Kinoshita
Bioinformatics (2008) 24(11): 1344-1348
Software for the calculation of isotope patterns in tandem mass spectrometry
Louis Ramaley, Lisandra Cubero Herrera
Rapid Communications in Mass Spectrometry (2008) 22(17): 2707-2714
BioMAJ: a flexible framework for databanks synchronization and processing
Olivier Filangi, Yoann Beausse, Anthony Assi, Ludovic Legrand, Jean-Marc Larre, Veronique Martin, Olivier Collin, Christophe Caron, Hugues Leroy, and David Allouche
Bioinformatics (2008) 24(16): 1823-1825
Predicting sub-Golgi localization of type II membrane proteins
A. D. J. van Dijk, D. Bosch, C. J. F. ter Braak, A. R. van der Krol, and R. C. H. J. van Ham
Bioinformatics (2008) 24(16): 1779-1786
Identifying components of complexes
Goffard N, Weiller G.
Methods Mol Biol (2008) 453: 257-65
Extent of N-terminal modifications in cytosolic proteins from eukaryotes
Aude Martinez, José A. Traverso, Benoît Valot, Myriam Ferro, Christelle Espagne, Geneviève Ephritikhine, Michel Zivy, Carmela Giglione, Thierry Meinnel
PROTEOMICS (2008) 8(14): 2809-2831
Biomarker selection and sample prediction for multi-category disease on MALDI-TOF data
Jung Hun Oh, Young Bun Kim, Prem Gurnani, Kevin P. Rosenblatt, and Jean X. Gao
Bioinformatics (2008) 24(16): 1812-1818
Validating Annotations for Uncharacterized Proteins in Shewanella oneidensis
Louie B, Tarczy-Hornoch P, Higdon R, Kolker E.
OMICS Early Edition: published 7-Aug-2008
A novel wavelet-based thresholding method for the pre-processing of mass spectrometry data that accounts for heterogeneous noise
Deukwoo Kwon, Marina Vannucci, Joon Jin Song, Jaesik Jeong, Ruth M. Pfeiffer
PROTEOMICS (2008) 8(15): 3019-3029
PhosCalc: A tool for evaluating the sites of peptide phosphorylation from Mass Spectrometer data
Maclean D, Burrell MA, Studholme DJ, Jones AM.
BMC Res Notes (2008) 1: 30.
An integrative approach for predicting interactions of protein regions
Sven-Eric Schelhorn, Thomas Lengauer, and Mario Albrecht
Bioinformatics (2008) 24(16): i35-i41
Efficient functional clustering of protein sequences using the Dirichlet process
Duncan P. Brown
Bioinformatics (2008) 24(16): 1765-1771
Enhancing Peptide Identification Confidence by Combining Search Methods
Gelio Alves, Wells W. Wu, Guanghui Wang, Rong-Fong Shen, and Yi-Kuo Yu
JOURNAL OF PROTEOME RESEARCH (2008) 7(08): 3102-3113
Protein identification pipeline for the homology-driven proteomics
Junqueira M, Spirin V, Balbuena TS, Thomas H, Adzhubei I, Sunyaev S, Shevchenko A
J Proteomics (2008) 71(3): 346-56
swissPIT: a novel approach for pipelined analysis of mass spectrometry data
Andreas Quandt, Patricia Hernandez, Alexandre Masselot, Celine Hernandez, Sergio Maffioletti, Cesare Pautasso, Ron D. Appel, and Frederique Lisacek
Bioinformatics (2008) 24(11): 1416-1417
Colander: A Probability-Based Support Vector Machine Algorithm for Automatic Screening for CID Spectra of Phosphopeptides Prior to Database Search
Bingwen Lu, Cristian I. Ruse, and John R. Yates III
JOURNAL OF PROTEOME RESEARCH (2008) 7(08): 3628-3634
mzML: A single, unifying data format for mass spectrometer output
Eric Deutsch
PROTEOMICS (2008) 8(14): 2776-2777
Spectral Probabilities and Generating Functions of Tandem Mass Spectra: A Strike against Decoy Databases
Sangtae Kim, Nitin Gupta, and Pavel A. Pevzner
JOURNAL OF PROTEOME RESEARCH (2008) 7(08): 3354-3363
Functional coherence in domain interaction networks
Jayesh Pandey, Mehmet Koyuturk, Shankar Subramaniam, and Ananth Grama
Bioinformatics (2008) 24(16): i28-i34
Non-parametric estimation of posterior error probabilities associated with peptides identified by tandem mass spectrometry
Lukas Kall, John D. Storey, and William Stafford Noble
Bioinformatics (2008) 24(16): i42-i48
Challenges and solutions in proteomics
Hongzhan H, Shukla HD, Cathy W, Satya S.
Curr Genomics (2007) 8(1): 21-8
Accurate approximation method for prediction of class I MHC affinities for peptides of length 8, 10 and 11 using prediction tools trained on 9mers
Claus Lundegaard, Ole Lund, and Morten Nielsen
Bioinformatics (2008) 24(11): 1397-1398
PhosphoPOINT: a comprehensive human kinase interactome and phospho-protein database
Chia-Ying Yang, Chao-Hui Chang, Ya-Ling Yu, Tsu-Chun Emma Lin, Sheng-An Lee, Chueh-Chuan Yen, Jinn-Moon Yang, Jin-Mei Lai, Yi-Ren Hong, Tzu-Ling Tseng, Kun-Mao Chao, and Chi-Ying F. Huang
Bioinformatics (2008) 24(16): i14-i20
Analysis of mass spectrometry data in proteomics
Matthiesen R, Jensen ON.
Methods Mol Biol (2008) 453: 105-22
Oscore: a combined score to reduce false negative rates for peptide identification in tandem mass spectrometry analysis
Shao C, Sun W, Li F, Yang R, Zhang L, Gao Y.
J Mass Spectrom Early Edition: published 12-Aug-2008
Improved image analysis workflow for 2-D gels enables large-scale 2-D gel-based proteomics studies - COPD biomarker discovery study
Julia E. Bandow, John D. Baker, Matthias Berth, Cory Painter, Osvaldo J. Sepulveda, Kelly A. Clark, Iain Kilty, Ruth A. VanBogelen
PROTEOMICS (2008) 8(15): 3030-3041
Increasing information from shotgun proteomic data by accounting for misassigned precursor ion masses
Alexander Scherl, Yihsuan Shannon Tsai, Scott A. Shaffer, David R. Goodlett
PROTEOMICS (2008) 8(14): 2791-2797
Organization and integration of biomedical knowledge with concept maps for key peroxisomal pathways
A.M. Willemsen, G.A. Jansen, J.C. Komen, S. van Hooff, H.R. Waterham, P.M.T. Brites, R.J.A. Wanders, and A.H.C. van Kampen
Bioinformatics (2008) 24(16): i21-i27
Calculation of the isoelectric point of tryptic peptides in the pH 3.5-4.5 range based on adjacent amino acid effects
Benjamin J. Cargile, Joel R. Sevinsky, Amal S. Essader, Jerry P. Eu, James L. Stephenson Jr.
ELECTROPHORESIS (2008) 29(13): 2768-2778
Predicting protein function from domain content
Kristoffer Forslund and Erik L. L. Sonnhammer
Bioinformatics (2008) 24(15): 1681-1687
A whole-genome bioinformatics approach to selection of antigens for systematic antibody generation
Lisa Berglund, Erik Björling, Kalle Jonasson, Johan Rockberg, Linn Fagerberg, Cristina Al-Khalili Szigyarto, Åsa Sivertsson, Mathias Uhlén
PROTEOMICS (2008) 8(14): 2832-2839
Separating the Wheat from the Chaff: Unbiased Filtering of Background Tandem Mass Spectra Improves Protein Identification
Magno Junqueira, Victor Spirin, Tiago Santana Balbuena, Patrice Waridel, Vineeth Surendranath, Grigoriy Kryukov, Ivan Adzhubei, Henrik Thomas, Shamil Sunyaev, and Andrej Shevchenko
JOURNAL OF PROTEOME RESEARCH (2008) 7(08): 3382-3395
Phosphorylation-Specific MS/MS Scoring for Rapid and Accurate Phosphoproteome Analysis
Samuel H. Payne, Margaret Yau, Marcus B. Smolka, Stephen Tanner, Huilin Zhou, and Vineet Bafna
JOURNAL OF PROTEOME RESEARCH (2008) 7(08): 3373-3381
Database indexing for production MegaBLAST searches
Aleksandr Morgulis, George Coulouris, Yan Raytselis, Thomas L. Madden, Richa Agarwala, and Alejandro A. Schaffer
Bioinformatics (2008) 24(16): 1757-1764
Mining significant tree patterns in carbohydrate sugar chains
Kosuke Hashimoto, Ichigaku Takigawa, Motoki Shiga, Minoru Kanehisa, and Hiroshi Mamitsuka
Bioinformatics (2008) 24(16): i167-i173
MITICS (MALDI Imaging Team Imaging Computing System): A new open source mass spectrometry imaging software
Jardin-Mathe O, Bonnel D, Franck J, Wisztorski M, Macagno E, Fournier I, Salzet M
J Proteomics (2008) 71(3): 332-45
Proteomic Dissection of Agonist-Specific TLR-Mediated Inflammatory Responses on Macrophages at Subcellular Resolution
Yan Xue, Dong Yun, Alex Esmon, Peng Zou, Shuai Zuo, Yanbao Yu, Fuchu He, Pengyuan Yang, and Xian Chen
JOURNAL OF PROTEOME RESEARCH (2008) 7(08): 3180-3193
Candida albicans biofilm formation is associated with increased anti-oxidative capacities
C. Jayampath Seneviratne, Yu Wang, Lijian Jin, Yoshi Abiko, Lakshman P. Samaranayake
PROTEOMICS (2008) 8(14): 2936-2947
Proteomic analysis of larvae during development, attachment, and metamorphosis in the fouling barnacle, Balanus amphitrite
Vengatesen Thiyagarajan, Pei-Yuan Qian
PROTEOMICS (2008) 8(15): 3164-3172
A long-term study on female mice fed on a genetically modified soybean: effects on liver ageing
Malatesta M, Boraldi F, Annovi G, Baldelli B, Battistelli S, Biggiogera M, Quaglino D.
Histochem Cell Biol Early Edition: published 22-Jul-2008
Proteomic identification of the silkworm (Bombyx mori L) prothoracic glands during the fifth instar stage
Wu XF, Li XH, Yue WF, Roy B, Li GL, Liu JM, Zhong BX, Gao QK, David WC, Miao YG.
Biosci Rep Early Edition: published 20-Aug-2008
Identification of Streptomyces lividans proteins secreted by the twin-arginine translocation pathway following growth with different carbon sources
Guimond J, Morosoli R.
Can J Microbiol (2008) 54(7): 549-58
Proteomic profiling of cellular targets of lipopolysaccharide-induced signalling in Nicotiana tabacum BY-2 cells
Gerber IB, Laukens K, De Vijlder T, Witters E, Dubery IA.
Biochim Biophys Acta Early Edition: published 25-Jun-2008
Complementary Analysis of the Vegetative Membrane Proteome of the Human Pathogen Staphylococcus aureus
Susanne Wolff, Hannes Hahne, Michael Hecker, and Dorte Becher
Mol Cell Proteomics (2008) 7(8): 1460-1468
Proteomic and transcriptomic study on the action of a cytotoxic saponin (Polyphyllin D): Induction of endoplasmic reticulum stress and mitochondria-mediated apoptotic pathways
Fung-Ming Siu, Dik-Lung Ma, Yee-Wai Cheung, Chun-Nam Lok, Kun Yan, Zhiqi Yang, Mengsu Yang, SongXiao Xu, Ben Chi-Bun Ko, Qing-Yu He, Chi-Ming Che
PROTEOMICS (2008) 8(15): 3105-3117
Physical and computational analysis of the yeast Kluyveromyces lactis secreted proteome
Catherine L. Swaim, Brian P. Anton, Shamik S. Sharma, Christopher H. Taron, Jack S. Benner
PROTEOMICS (2008) 8(13): 2714-2723
2-D DIGE analyses of enriched secretory lysosomes reveal heterogeneous profiles of functionally relevant proteins in leukemic and activated human NK cells
Hendrik Schmidt, Christoph Gelhaus, Melanie Nebendahl, Marcus Lettau, Carsten Watzl, Dieter Kabelitz, Matthias Leippe, Ottmar Janssen
PROTEOMICS (2008) 8(14): 2911-2925
A proteomic approach to the identification of tegumental proteins of male and female Schistosoma bovis worms
Pérez-Sánchez R, Valero ML, Ramajo-Hernández A, Siles-Lucas M, Ramajo-MartÃn V, Oleaga A.
Mol Biochem Parasitol (2008) 161(2): 112-23
Quantitative proteomics of a chloroplast SRP54 sorting mutant and its genetic interactions with CLPC1 in Arabidopsis thaliana
Rutschow H, Ytterberg AJ, Friso G, Nilsson R, van Wijk KJ.
Plant Physiol (2008) 148(1): 156-75
Proteome of Geobacter sulfurreducens grown with Fe(III) oxide or Fe(III) citrate as the electron acceptor
Ding YH, Hixson KK, Aklujkar MA, Lipton MS, Smith RD, Lovley DR, Mester T.
Biochim Biophys Acta Early Edition: published 25-Jun-2008
Proteome identification of binding-partners interacting with cell polarity protein Par3 in Jurkat cells
Zhou Y, Fang L, Du D, Zhou W, Feng X, Chen J, Zhang Z, Chen Z.
Acta Biochim Biophys Sin (Shanghai) (2008) 40(8): 729-39
The Response of Human Colonocytes to Folate Deficiency in Vitro: Functional and Proteomic Analyses
Susan J. Duthie, Yiannis Mavrommatis, Gary Rucklidge, Martin Reid, Gary Duncan, Mary P. Moyer, Lynn P. Pirie, and Charles S. Bestwick
JOURNAL OF PROTEOME RESEARCH (2008) 7(08): 3254-3266
Comprehensive Analysis of the Effects of Escherichia coli ORFs on Protein Translation Reaction
Yasuaki Kazuta, Jiro Adachi, Tomoaki Matsuura, Naoaki Ono, Hirotada Mori, and Tetsuya Yomo
Mol Cell Proteomics (2008) 7(8): 1530-1540
Mass spectrometric proteome analysis suggests anaerobic shift in metabolism of Dauer larvae of Caenorhabditis elegans
Mádi A, Mikkat S, Koy C, Ringel B, Thiesen HJ, Glocker MO.
Biochim Biophys Acta Early Edition: published 14-Jun-2008
Secretome analysis of Phanerochaete chrysosporium strain CIRM-BRFM41 grown on softwood
Ravalason H, Jan G, Mollé D, Pasco M, Coutinho PM, Lapierre C, Pollet B, Bertaud F, Petit-Conil M, Grisel S, Sigoillot JC, Asther M, Herpoël-Gimbert I.
Appl Microbiol Biotechnol Early Edition: published 25-Jul-2008
The impact of microRNAs on protein output
Baek D, Villén J, Shin C, Camargo FD, Gygi SP, Bartel DP.
Nature (2008) 455(7209): 64-71
A proteomic reference map for pig serum proteins as a prerequisite for diagnostic applications
Miller I, Wait R, Sipos W, Gemeiner M.
Res Vet Sci Early Edition: published 9-Jul-2008
Snake Venomics of the Lancehead Pitviper Bothrops asper: Geographic, Individual, and Ontogenetic Variations
Alberto Alape-Girón, Libia Sanz, José Escolano, Marietta Flores-Díaz, Marvin Madrigal, Mahmood Sasa, and Juan J. Calvete
JOURNAL OF PROTEOME RESEARCH (2008) 7(08): 3556-3571
Proteomic analysis of rat retina in a steroid-induced ocular hypertension model: Potential vulnerability to oxidative stress
Miyara N, Shinzato M, Yamashiro Y, Iwamatsu A, Kariya K, Sawaguchi S.
Jpn J Ophthalmol (2008) 52(2): 84-90
Differential proteomics in the aging Noble rat ventral prostate
Ying Wai Lam, Neville N. C. Tam, James E. Evans, Karin M. Green, Xiang Zhang, Shuk-Mei Ho
PROTEOMICS (2008) 8(13): 2750-2763
Proteomics reveals novel Drosophila seminal fluid proteins transferred at mating
Findlay GD, Yi X, Maccoss MJ, Swanson WJ.
PLoS Biol (2008) 6(7): e178
Feeder-free Monolayer Cultures of Human Embryonic Stem Cells Express an Epithelial Plasma Membrane Protein Profile
Van Hoof D, Braam SR, Dormeyers W, Ward-van Oostwaard D, Heck AJ, Krijgsveld J, Mummery CL.
Stem Cells Early Edition: published 14-Aug-2008
Proteomic analysis of CTGF-activated lung fibroblasts: identification of IQGAP1 as a key player in lung fibroblast migration
Bogatkevich GS, Ludwicka-Bradley A, Singleton CB, Bethard JR, Silver RM.
Am J Physiol Lung Cell Mol Physiol Early Edition: published 1-Aug-2008
Pathogenic rabies virus alters host protein expression in the central nervous system: implications for neuronal dysfunction
Fu ZF, Li X, Dhingra V.
Dev Biol (Basel) (2008) 131: 83-91
Domain organization of long signal peptides of single-pass integral membrane proteins reveals multiple functional capacity
Hiss JA, Resch E, Schreiner A, Meissner M, Starzinski-Powitz A, Schneider G.
PLoS ONE (2008) 3(7): e2767
Profiling the proteome dynamics during the cell cycle of human hepatoma cells
Sen-Yung Hsieh, Feng-Hui Zhuang, Yi-Ting Wu, Jen-Kun Chen, Yun-Lin Lee
PROTEOMICS (2008) 8(14): 2872-2884
Proteomics in Trypanosoma cruzi - localization of novel proteins to various organelles
Marcela Ferella, Daniel Nilsson, Hamid Darban, Claudia Rodrigues, Esteban J. Bontempi, Roberto Docampo, Björn Andersson
PROTEOMICS (2008) 8(13): 2735-2749
Differentially Expressed Protein Profile of Human Dental Pulp Cells in the Early Process of Odontoblast-like Differentiation In Vitro
Wei X, Wu L, Ling J, Liu L, Liu S, Liu W, Li M, Xiao Y.
J Endod (2008) 34(9): 1077-84
Proteomic profiling of neuromas reveals alterations in protein composition and local protein synthesis in hyper-excitable nerves
Huang HL, Cendan CM, Roza C, Okuse K, Cramer R, Timms JF, Wood JN.
Mol Pain (2008) 4(1): 33
Cross-species Global Proteomics Reveals Conserved and Unique Processes in Phytophthora sojae and Phytophthora ramorum
Alon Savidor, Ryan S. Donahoo, Oscar Hurtado-Gonzales, Miriam L. Land, Manesh B. Shah, Kurt H. Lamour, and W. Hayes McDonald
Mol Cell Proteomics (2008) 7(8): 1501-1516
Genetic or chemical protease inhibition causes significant changes in the Bacillus subtilis exoproteome
Lidia Westers, Helga Westers, Geeske Zanen, Haike Antelmann, Michael Hecker, David Noone, Kevin M. Devine, Jan Maarten van Dijl, Wim J. Quax
PROTEOMICS (2008) 8(13): 2704-2713
Determination of protein-incorporated methylated arginine reference values in healthy subjects whole blood and evaluation of factors affecting protein methylation
Zinellu A, Sotgia S, Scanu B, Deiana L, Carru C.
Clin Biochem Early Edition: published 30-Jul-2008
New observations on the compact myelin proteome
Roth AD, Ivanova A, Colman DR.
Neuron Glia Biol (2006) 2(1): 15-21
Deciphering animal development through proteomics: requirements and prospects
Reintsch WE, Mandato CA.
Proteome Science (2008) 6(1): 21
Proteomic analysis of ubiquitinated proteins in normal hepatocyte cell line Chang liver cells
Fengwei Tan, Lifang Lu, Yun Cai, Jinglan Wang, Yunfei Xie, Lin Wang, Yanhua Gong, Bing-e Xu, Jun Wu, Ying Luo, Boqin Qiang, Jiangang Yuan, Xiaoqing Sun, Xiaozhong Peng
PROTEOMICS (2008) 8(14): 2885-2896
Quantitative proteomic analysis of LPS-induced differential immune response associated with TLR4 Polymorphisms by multiplex amino acid coded mass tagging
Sheng Gu, Tianyi Wang, Xian Chen
PROTEOMICS (2008) 8(15): 3061-3070
The Identification of Potential Factors Associated with the Development of
Type 2 Diabetes: A Quantitative Proteomics Approach
Mol Cell Proteomics (2008) 7(8): 1434-1451
Comprehensive Royal Jelly (RJ) Proteomics Using One- and Two-Dimensional Proteomics Platforms Reveals Novel RJ Proteins and Potential Phospho/Glycoproteins
Takako Furusawa, Randeep Rakwal, Hyung Wook Nam, Junko Shibato, Ganesh Kumar Agrawal, Yu Sam Kim, Yoko Ogawa, Yasukazu Yoshida, Yoshiaki Kouzuma, Yoshinori Masuo, and Masami Yonekura
JOURNAL OF PROTEOME RESEARCH (2008) 7(08): 3194-3229
Triplex Profiling of Functionally Distinct Chaperones (ERp29/PDI/BiP) Reveals Marked Heterogeneity of the Endoplasmic Reticulum Proteome in Cancer
Steven D. Shnyder, Jonathan E. Mangum, and Michael J. Hubbard
JOURNAL OF PROTEOME RESEARCH (2008) 7(08): 3364-3372
Proteomic profile of osteoclast membrane proteins: Identification of Na+/H+ exchanger domain containing 2 and its role in osteoclast fusion
Byung Geun Ha, Jung Min Hong, Ju-Yong Park, Mi-Hyun Ha, Tae-Ho Kim, Je-Yeol Cho, Hyun-Mo Ryoo, Je-Yong Choi, Hong-In Shin, So Young Chun, Shin-Yoon Kim, Eui Kyun Park
PROTEOMICS (2008) 8(13): 2625-2639
Proteomics Analysis of Major Royal Jelly Protein Changes under Different Storage Conditions
Jian-ke Li, Mao Feng, Lan Zhang, Zhao-hui Zhang, and Ying-hong Pan
JOURNAL OF PROTEOME RESEARCH (2008) 7(08): 3339-3353
Exploring the Chicken Egg White Proteome with Combinatorial Peptide Ligand Libraries
Chiara D’Ambrosio, Simona Arena, Andrea Scaloni, Luc Guerrier, Egisto Boschetti, Martha Elena Mendieta, Attilio Citterio, and Pier Giorgio Righetti
JOURNAL OF PROTEOME RESEARCH (2008) 7(08): 3461-3474
Root-microbe communication through protein secretion
De-la-Peña C, Lei Z, Watson BS, Sumner LW, Vivanco JM.
J Biol Chem Early Edition: published 17-Jul-2008
Proteome-wide characterization of sugarbeet seed vigor and its tissue specific expression
Catusse J, Strub JM, Job C, Van Dorsselaer A, Job D.
Proc Natl Acad Sci U S A Early Edition: published 17-Jul-2008
Potato skin proteome is enriched with plant defence components
Barel G, Ginzberg I.
J Exp Bot (2008) 59(12): 3347-57
Comparative Proteomics Analysis Reveals an Intimate Protein Network Provoked by Hydrogen Peroxide Stress in Rice Seedling Leaves
Xiang-Yuan Wan and Jin-Yuan Liu
Mol Cell Proteomics (2008) 7(8): 1469-1488
Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle
Daub H, Olsen JV, Bairlein M, Gnad F, Oppermann FS, Körner R, Greff Z, Kéri G, Stemmann O, Mann M.
Mol Cell (2008) 31(3): 438-48
Proteomic Study of Biocontrol Mechanisms of Trichoderma harzianum ETS 323 in Response to Rhizoctonia solani
Tseng SC, Liu SY, Yang HH, Lo CT, Peng KC.
J Agric Food Chem (2008) 56(16): 6914-22
Comparative proteomic and transcriptional profiling of a bread wheat cultivar and its derived transgenic line overexpressing a low molecular weight glutenin subunit gene in the endosperm
Federico Scossa, Debbie Laudencia-Chingcuanco, Olin D. Anderson, William H. Vensel, Domenico Lafiandra, Renato D'Ovidio, Stefania Masci
PROTEOMICS (2008) 8(14): 2948-2966
Proteomic profiling of CHO cells with enhanced rhBMP-2 productivity following co-expression of PACEsol
Paula Meleady, Michael Henry, Patrick Gammell, Padraig Doolan, Martin Sinacore, Mark Melville, Linda Francullo, Mark Leonard, Timothy Charlebois, Martin Clynes
PROTEOMICS (2008) 8(13): 2611-2624
Exploring the nuclear proteome of Medicago truncatula at the switch towards seed filling
Repetto O, Rogniaux H, Firnhaber C, Zuber H, Küster H, Larré C, Thompson R, Gallardo K.
Plant J Early Edition: published 4-Jul-2008
Proteomic analysis of the effect of bile salts on the intestinal and probiotic bacterium Lactobacillus reuteri
Lee K, Pi K.
J Biotechnol Early Edition: published 16-Jul-2008
Proteomic Analysis of Lupin Seed Proteins To Identify Conglutin beta as an Allergen, Lup an 1
Goggin DE, Mir G, Smith WB, Stuckey M, Smith PM.
J Agric Food Chem (2008) 56(15): 6370-7
Expressed sequence tags and proteomics of antennae from the tortricid moth, Epiphyas postvittana
Jordan MD, Stanley D, Marshall SD, De Silva D, Crowhurst RN, Gleave AP, Greenwood DR, Newcomb RD.
Insect Mol Biol (2008) 17(4): 361-73
Mitosis-Dependent Protein Expression in Neuroblastoma Cell Line N1E-115
Amedeo A. Azizi, Sung-Ung Kang, Angelika Freilinger, Mariella Gruber-Olipitz, Wei-Qiang Chen, Jae-Won Yang, Markus Hengstschläger, Irene Slavc, and Gert Lubec
JOURNAL OF PROTEOME RESEARCH (2008) 7(08): 3412-3422
HP-Lattice QSAR for dynein proteins: Experimental proteomics (2D-electrophoresis, mass spectrometry) and theoretic study of a Leishmania infantum sequence
Dea-Ayuela MA, Pérez-Castillo Y, Meneses-Marcel A, Ubeira FM, Bolas-Fernández F, Chou KC, González-DÃaz H.
Bioorg Med Chem (2008) 16(16): 7770-6
Proteomic analysis of fructose-induced fatty liver in hamsters
Zhang L, Perdomo G, Kim DH, Qu S, Ringquist S, Trucco M, Dong HH.
Metabolism (2008) 57(8): 1115-24
Introduction of the Disulfide Proteome: Application of a Technique for the Analysis of Plant Storage Proteins as Well as Allergens
Hiroyuki Yano and Shigeru Kuroda
JOURNAL OF PROTEOME RESEARCH (2008) 7(08): 3071-3079
A Proteomic approach for protein-profiling the oncogenic ras induced transformation (H-, K-, and N-Ras) in NIH/3T3 mouse embryonic fibroblasts
Seyoon Kim, Yong Zu Lee, Yu Sam Kim, Young Yil Bahk
PROTEOMICS (2008) 8(15): 3082-3093
A Proteomics Approach for Identification of Single Strand DNA-binding Proteins Involved in Transcriptional Regulation of Mouse {micro} Opioid Receptor Gene
Hack Sun Choi, Kyu Young Song, Cheol Kyu Hwang, Chun Sung Kim, Ping-Yee Law, Li-Na Wei, and Horace H. Loh
Mol Cell Proteomics (2008) 7(8): 1517-1529
Receptor tyrosine kinase (RTK) mediated tyrosine phosphor-proteome from Drosophila S2 (ErbB1) cells reveals novel signaling networks
Krishnamoorthy S.
PLoS ONE (2008) 3(8): e2877
Aberrant expression of developmentally important signaling molecules in cloned porcine extraembryonic tissues
Jung-Il Chae, Kweon Yu, Seong-Keun Cho, Jin-Hoi Kim, Deog-Bon Koo, Kyung-Kwang Lee, Yong-Mahn Han
PROTEOMICS (2008) 8(13): 2724-2734
High sensitivity proteomics assisted discovery of a novel operon involved in the assembly of photosystem II, a membrane protein complex
Wegener KM, Welsh EA, Thornton LE, Keren N, Jacobs JM, Hixson KK, Monroe ME, Camp DG 2nd, Smith RD, Pakrasi HB.
J Biol Chem Early Edition: published 8-Aug-2008
Widespread changes in protein synthesis induced by microRNAs
Selbach M, Schwanhäusser B, Thierfelder N, Fang Z, Khanin R, Rajewsky N.
Nature (2008) 455(7209): 58-63
Serratia entomophila inoculation causes a defect in exocytosis in Costelytra zealandica larvae
Gatehouse HS, Marshall SD, Simpson RM, Gatehouse LN, Jackson TA, Christeller JT.
Insect Mol Biol (2008) 17(4): 375-85
Proteomic Characterization of Royal Jelly Proteins in Chinese (Apis cerana cerana) and European (Apis mellifera) Honeybees
Qu N, Jiang J, Sun L, Lai C, Sun L, Wu X.
Biochemistry (Mosc) (2008) 73(6): 676-80
The cellular prion protein PrP is involved in the proliferation of epithelial cells and in the distribution of junction-associated proteins
Morel E, Fouquet S, Strup-Perrot C, Thievend CP, Petit C, Loew D, Faussat AM, Yvernault L, Pinçon-Raymond M, Chambaz J, Rousset M, Thenet S, Clair C.
PLoS ONE (2008) 3(8): e3000
Characterization of metalloprotease cleavage products of human articular cartilage
Zhen EY, Brittain IJ, Laska DA, Mitchell PG, Sumer EU, Karsdal MA, Duffin KL.
Arthritis Rheum (2008) 58(8): 2420-2431
Functional Clustering of Metastasis Proteins Describes Plastic Adaptation Resources of Breast-Cancer Cells to New Microenvironments
Berta Martín, Rebeca Sanz, Ramón Aragüés, Baldo Oliva, and Angels Sierra
JOURNAL OF PROTEOME RESEARCH (2008) 7(08): 3242-3253
The role of thioredoxin TrxA in Bacillus subtilis: A proteomics and transcriptomics approach
Jörg Mostertz, Falko Hochgräfe, Britta Jürgen, Thomas Schweder, Michael Hecker
PROTEOMICS (2008) 8(13): 2676-2690
Rab18 and Rab43 have key roles in ER-Golgi trafficking
Dejgaard SY, Murshid A, Erman A, Kizilay O, Verbich D, Lodge R, Dejgaard K, Ly-Hartig TB, Pepperkok R, Simpson JC, Presley JF.
J Cell Sci (2008) 121(Pt 16): 2768-81
Proteomic analysis of the knob-producing nematode-trapping fungus Monacrosporium lysipagum
Khan A, Williams KL, Soon J, Nevalainen HK.
Mycol Res Early Edition: published 2-Jul-2008
Total, membrane, and immunogenic proteomes of macrophage- and tick cell-derived Ehrlichia chaffeensis evaluated by LC-MS/MS and MALDI-TOF methods
Seo GM, Cheng C, Tomich J, Ganta RR.
Infect Immun Early Edition: published 18-Aug-2008
Chapter seventeen two-dimensional gel-based analysis of the demolition phase of apoptosis
Lüthi AU, Cullen SP, Martin SJ.
Methods Enzymol (2008) 442: 343-54
Identification of multi-SH3 domain-containing protein interactome in pancreatic cancer: A yeast two-hybrid approach
Subhash Thalappilly, Muhtadi Suliman, Odile Gayet, Philippe Soubeyran, Aurélie Hermant, Patrick Lecine, Juan L. Iovanna, Nelson J. Dusetti
PROTEOMICS (2008) 8(15): 3071-3081
Proteomic analysis of neuroendocrine peptidergic system disruption using the AtT20 pituitary cell line as a model
Dong F, Ma L, Chrétien M, Mbikay M.
Methods Mol Biol (2008) 410: 111-22
Functional characterisation of altered outer membrane proteins for tetracycline resistance in Escherichia coli
Zhang DF, Jiang B, Xiang ZM, Wang SY.
Int J Antimicrob Agents Early Edition: published 10-Jul-2008
Construction of a Proteome Profile and Functional Analysis of the Proteins Involved in the Initiation of Mouse Spermatogenesis
Xiao-yan Huang, Xue-jiang Guo, Jian Shen, Yu-feng Wang, Lin Chen, Jin Xie, Ning-ling Wang, Fu-qiang Wang, Chun Zhao, Ran Huo, Min Lin, Xinru Wang, Zuo-min Zhou, and Jia-hao Sha
JOURNAL OF PROTEOME RESEARCH (2008) 7(08): 3435-3446
Proteomic analysis of parasitized Plutella xylostella larvae plasma
Song KH, Jung MK, Eum JH, Hwang IC, Han SS.
J Insect Physiol Early Edition: published 10-Jul-2008
A high-temporal resolution technology for dynamic proteomic analysis based on 35S labeling
Zhang Z, Chen J, Guo F, He L, Wu Y, Zeng C, Xiao X, He D.
PLoS ONE (2008) 3(8): e2991
Proteomic investigation of amino acid catabolism in the indigenous gut anaerobe Fusobacterium varium
Joanna Potrykus, Robert L. White, Stephen L. Bearne
PROTEOMICS (2008) 8(13): 2691-2703
A Proteomics Approach To Quantify Protein Levels Following RNA Interference: Case Study with Glutathione Transferase Superfamily from the Model Metazoan Caenorhabditis elegans
E. J. LaCourse, S. Perally, M. Hernandez-Viadel, H. A. Wright, and P. M. Brophy
JOURNAL OF PROTEOME RESEARCH (2008) 7(08): 3314-3318
Targeted Quantitative Analysis of Streptococcus pyogenes Virulence Factors by Multiple Reaction Monitoring
Vinzenz Lange, Johan A. Malmstrom, John Didion, Nichole L. King, Bjorn P. Johansson, Juliane Schafer, Jonathan Rameseder, Chee-Hong Wong, Eric W. Deutsch, Mi-Youn Brusniak, Peter Buhlmann, Lars Bjorck, Bruno Domon, and Ruedi Aebersold
Mol Cell Proteomics (2008) 7(8): 1489-1500
A comparative proteomic analysis of Gluconacetobacter diazotrophicus PAL5 at exponential and stationary phases of cultures in the presence of high and low levels of inorganic nitrogen compound
Lery LM, von Krüger WM, Viana FC, Teixeira KR, Bisch PM.
Biochim Biophys Acta Early Edition: published 9-Jul-2008
Proteomic analysis of antioxidant strategies of Staphylococcus aureus: Diverse responses to different oxidants
Carmen Wolf, Falko Hochgräfe, Harald Kusch, Dirk Albrecht, Michael Hecker, Susanne Engelmann
PROTEOMICS (2008) 8(15): 3139-3153
Farnesol, a fungal quorum-sensing molecule triggers apoptosis in human oral squamous carcinoma cells
Scheper MA, Shirtliff ME, Meiller TF, Peters BM, Jabra-Rizk MA.
Neoplasia (2008) 10(9): 954-63
Analysis of growth phase-dependent proteome profiles reveals differential regulation of mRNA and protein in Helicobacter pylori
Young Wook Choi, Shin Ae Park, Hyang Woo Lee, Dong Su Kim, Na Gyong Lee
PROTEOMICS (2008) 8(13): 2665-2675
Differential proteomic analysis of bovine conceptus fluid proteins in pregnancies generated by assisted reproductive technologies
George A. Riding, Jonathan R. Hill, Alun Jones, Michael K. Holland, Peter F. Josh, Sigrid A. Lehnert
PROTEOMICS (2008) 8(14): 2967-2982
Proteomic and metabolic characterization of a Candida albicans mutant resistant to the antimicrobial peptide MUC7 12-mer
Lis M, Bobek LA.
FEMS Immunol Med Microbiol Early Edition: published 1-Aug-2008
Secretome of HepG2 cells infected with dengue virus: Implications for pathogenesis
Higa LM, Caruso MB, Canellas F, Soares MR, Oliveira-Carvalho AL, Chapeaurouge DA, Almeida PM, Perales J, Zingali RB, Da Poian AT.
Biochim Biophys Acta Early Edition: published 28-Jun-2008
Proteomic analysis of differential protein expression in rat platelets treated with notoginsengnosides
Yao Y, Wu WY, Guan SH, Jiang BH, Yang M, Chen XH, Bi KS, Liu X, Guo DA.
Phytomedicine Early Edition: published 13-Aug-2008
Structural proteomics of dengue virus
Perera R, Kuhn RJ.
Curr Opin Microbiol (2008) 11(4): 369-77
Protein Profiling of Human Breast Tumor Cells Identifies Novel Biomarkers Associated with Molecular Subtypes
Anthony Goncalves, Emmanuelle Charafe-Jauffret, Francois Bertucci, Stephane Audebert, Yves Toiron, Benjamin Esterni, Florence Monville, Carole Tarpin, Jocelyne Jacquemier, Gilles Houvenaeghel, Christian Chabannon, Jean-Marc Extra, Patrice Viens, Jean-Paul Borg, and Daniel Birnbaum
Mol Cell Proteomics (2008) 7(8): 1420-1433
Search for Potential Markers for Prostate Cancer Diagnosis, Prognosis and Treatment in Clinical Tissue Specimens Using Amine-Specific Isobaric Tagging (iTRAQ) with Two-Dimensional Liquid Chromatography and Tandem Mass Spectrometry
Spiros D. Garbis, Stavros I. Tyritzis, Theodoros Roumeliotis, Panagiotis Zerefos, Eugenia G. Giannopoulou, Antonia Vlahou, Sophia Kossida, Jose Diaz, Stavros Vourekas, Constantin Tamvakopoulos, Kitty Pavlakis, Despina Sanoudou, and Constantinos A. Constantinides
JOURNAL OF PROTEOME RESEARCH (2008) 7(08): 3146-3158
Elevation of apolipoprotein A-I and apolipoprotein H levels in the vitreous fluid and overexpression in the retina of diabetic patients
Simó R, Higuera M, GarcÃa-RamÃrez M, Canals F, GarcÃa-Arumà J, Hernández C.
Arch Ophthalmol (2008) 126(8): 1076-81
Prediction of Acute Cellular Renal Allograft Rejection by Urinary Metabolomics Using MALDI-FTMS
Ji-Na Wang, Ying Zhou, Tong-Yu Zhu, Xiangdong Wang, and Yin-Long Guo
JOURNAL OF PROTEOME RESEARCH (2008) 7(08): 3597-3601
Proteomic analysis of mononuclear cells of patients with minimal-change nephrotic syndrome of childhood
González E, Neuhaus T, Kemper MJ, Girardin E.
Nephrol Dial Transplant Early Edition: published 12-Aug-2008
The urinary proteome in diabetes and diabetes-associated complications: New ways to assess disease progression and evaluate therapy
Kasper Rossing, Harald Mischak, Peter Rossing, Joost P. Schanstra, Alex Wiseman, David M. Maahs
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(7-8): 997-1007
CSF proteome analysis in multiple sclerosis patients by two-dimensional electrophoresis
Chiasserini D, Di Filippo M, Candeliere A, Susta F, Orvietani PL, Calabresi P, Binaglia L, Sarchielli P.
Eur J Neurol Early Edition: published 15-Jul-2008
Immunoproteomics to examine cystic fibrosis host interactions with extracellular Pseudomonas aeruginosa proteins
Upritchard HG, Cordwell SJ, Lamont IL.
Infect Immun Early Edition: published 28-Jul-2008
MS-based phenotypic characterization of a human blood protein from urinary waste products
Urban A. Kiernan, Lisa Hernandez, Eric E. Niederkofler, Kemmons A. Tubbs, Randall W. Nelson
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(7-8): 1019-1024
Ligand-induced Flt3-downregulation modulates cell death associated proteins and enhances chemosensitivity to idarubicin in THP-1 acute myeloid leukemia cells
Oveland E, Gjertsen BT, Wergeland L, Selheim F, Fladmark KE, Hovland R.
Leuk Res Early Edition: published 6-Aug-2008
Tissue culture-based breast cancer biomarker discovery platform
Kulasingam V, Diamandis EP.
Int J Cancer (2008) 123(9): 2007-12
Genomic and proteomic profiling of oxidative stress response in human diploid fibroblasts
Xie L, Pandey R, Xu B, Tsaprailis G, Chen QM.
Biogerontology Early Edition: published 25-Jul-2008
Paliperidone as a mood stabilizer: A pre-frontal cortex synaptoneurosomal proteomics comparison with lithium and valproic acid after chronic treatment reveals similarities in protein expression
Corena-McLeod MD, Oliveros A, Charlesworth C, Madden B, Liang YQ, Boules M, Shaw A, Williams K, Richelson E.
Brain Res Early Edition: published 15-Jul-2008
Proteomic studies of early-stage and advanced ovarian cancer patients
Wang J, Zhang X, Ge X, Guo H, Xiong G, Zhu Y.
Gynecol Oncol Early Edition: published 12-Aug-2008
HIV replication enhances production of free fatty acids, low density lipoproteins and many key proteins involved in lipid metabolism: a proteomics study
Rasheed S, Yan JS, Lau A, Chan AS.
PLoS ONE (2008) 3(8): e3003
Proteomic analysis of peanut seed storage proteins and genetic variation in a potential peanut allergen
Guo B, Liang X, Chung SY, Holbrook CC, Maleki SJ.
Protein Pept Lett (2008) 15(6): 567-77
Proteomic analysis identifies MMP-9, DJ-1 and A1BG as overexpressed proteins in pancreatic juice from pancreatic ductal adenocarcinoma patients
Tian M, Cui Y, Song G, Zong M, Zhou X, Chen Y, Han J.
BMC Cancer (2008) 8(1): 241
Autoantibodies as potential biomarkers for nasopharyngeal carcinoma
Yong-Qing Tong, Zhi-Jie Zhang, Bei Liu, Jian Huang, Hui Liu, Yan Liu, Feng-Jie Guo, Guo-Hua Zhou, Ping-Li Xie, Yue-Hui Li, Chao-Hu Zuo, Jin-Yue Hu, Guan-Cheng Li
PROTEOMICS (2008) 8(15): 3185-3193
Biomarker Discovery in Clinical Proteomics: Strategies for Exposing Low Abundant Proteins
Yu Wang, Jayampath Seneviratne
Current Proteomics (2008) 5(2): 104-114
Serum proteomic profiling of lung cancer in high-risk groups and determination of clinical outcomes
Jacot W, Lhermitte L, Dossat N, Pujol JL, Molinari N, Daurès JP, Maudelonde T, Mangé A, Solassol J.
J Thorac Oncol (2008) 3(8): 840-50
The potential biomarkers for thromboembolism detected by SELDI-TOF-MS
Hong M, Zhang X, Hu Y, Wang H, He W, Mei H, Yu J, Guo T, Song S.
Thromb Res Early Edition: published 10-Jul-2008
Proteome analysis for pathogenicity and new diagnostic markers for Aspergillus fumigatus
Kniemeyer O, Lessing F, Brakhage AA.
Med Mycol Early Edition: published 24-Jul-2008
Tumor expression of S100A6 correlates with survival of patients with stage I non-small-cell lung cancer
De Petris L, Orre LM, Kanter L, Pernemalm M, Koyi H, Lewensohn R, Lehtiö J.
Lung Cancer Early Edition: published 10-Jul-2008
A proteomic approach to immune-mediated epithelial-mesenchymal transition
Ronan Feighery, Patricia Maguire, Michael P. Ryan, Tara McMorrow
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(7-8): 1110-1117
A pivotal role for heat shock protein 90 in Ewing sarcoma resistance to anti-insulin-like growth factor 1 receptor treatment: in vitro and in vivo study
Martins AS, Ordoñez JL, GarcÃa-Sánchez A, Herrero D, Sevillano V, Osuna D, Mackintosh C, Caballero G, Otero AP, Poremba C, Madoz-Gúrpide J, de Alava E.
Cancer Res (2008) 68(15): 6260-70
Cell membrane proteomic analysis identifies proteins differentially expressed in osteotropic human breast cancer cells
Kischel P, Guillonneau F, Dumont B, Bellahcène A, Stresing V, Clézardin P, De Pauw EA, Castronovo V.
Neoplasia (2008) 10(9): 1014-20
Proteomic Analysis of Sequential Lung Lavage Proteins during the Acute Respiratory Distress Syndrome
Chang DW, Hayashi S, Gharib SA, Vaisar T, King ST, Tsuchiya M, Ruzinski JT, Park DR, Matute-Bello G, Wurfel MM, Bumgarner R, Heinecke JW, Martin TR.
Am J Respir Crit Care Med Early Edition: published 24-Jul-2008
Potential artefacts in proteome analysis of plasma of Gaucher patients due to protease abnormalities
van Breemen MJ, Aerts JM, Sprenger RR, Speijer D.
Clin Chim Acta (2008) 396(1-2): 26-32
2-D DIGE analyses of enriched secretory lysosomes reveal heterogeneous profiles of functionally relevant proteins in leukemic and activated human NK cells
Hendrik Schmidt, Christoph Gelhaus, Melanie Nebendahl, Marcus Lettau, Carsten Watzl, Dieter Kabelitz, Matthias Leippe, Ottmar Janssen
PROTEOMICS (2008) 8(14): 2911-2925
Proteomic profiling of the effect of prostate-specific antigen on prostate cancer cells
Bindukumar B, Schwartz S, Aalinkeel R, Mahajan S, Lieberman A, Chadha K.
Prostate (2008) 68(14): 1531-45
An integrative genomic and proteomic analysis of PIK3CA, PTEN, and AKT mutations in breast cancer
Stemke-Hale K, Gonzalez-Angulo AM, Lluch A, Neve RM, Kuo WL, Davies M, Carey M, Hu Z, Guan Y, Sahin A, Symmans WF, Pusztai L, Nolden LK, Horlings H, Berns K, Hung MC, van de Vijver MJ, Valero V, Gray JW, Bernards R, Mills GB, Hennessy BT.
Cancer Res (2008) 68(15): 6084-91
Proteomics of cancer of hormone-dependent tissues
Tyson DR, Ornstein DK.
Adv Exp Med Biol (2008) 630: 133-47
The urine proteome as a biomarker of radiation injury
Mukut Sharma, Brian D. Halligan, Bassam T. Wakim, Virginia J. Savin, Eric P. Cohen, John E. Moulder
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(7-8): 1065-1086
VAR2CSA Expression on the Surface of Placenta-Derived Plasmodium falciparum-Infected Erythrocytes
Magistrado P, Salanti A, Tuikue Ndam NG, Mwakalinga SB, Resende M, Dahlbäck M, Hviid L, Lusingu J, Theander TG, Nielsen MA.
J Infect Dis Early Edition: published 13-Aug-2008
The glomerular proteome in a model of chronic kidney disease
Sebastian A. Potthoff, Barbara Sitek, Johannes Stegbauer, Thomas Schulenborg, Katrin Marcus, Ivo Quack, Lars C. Rump, Helmut E. Meyer, Kai Stühler, Oliver Vonend
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(7-8): 1127-1139
Biomarker selection and sample prediction for multi-category disease on MALDI-TOF data
Jung Hun Oh, Young Bun Kim, Prem Gurnani, Kevin P. Rosenblatt, and Jean X. Gao
Bioinformatics (2008) 24(16): 1812-1818
A Mouse Model Repository for Cancer Biomarker Discovery
Karen S. Kelly-Spratt, A. Erik Kasarda, Mark Igra, and Christopher J. Kemp
JOURNAL OF PROTEOME RESEARCH (2008) 7(08): 3613-3618
Proteomic analysis of human proximal tubular cells exposed to high glucose concentrations
Eun-Jeong So, Hyun-Jung Kim, Chan-Wha Kim
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(7-8): 1118-1126
A proteomic approach to differentiate histologically classified stable and unstable plaques from human carotid arteries
Lepedda AJ, Cigliano A, Cherchi GM, Spirito R, Maggioni M, Carta F, Turrini F, Edelstein C, Scanu AM, Formato M.
Atherosclerosis Early Edition: published 12-Jul-2008
Proteomics in diabetes research
Sundsten T, Ortsäter H.
Mol Cell Endocrinol Early Edition: published 9-Jul-2008
Using proteomics to identify preprocedural risk factors for contrast induced nephropathy
Michael R. Bennett, Neelima Ravipati, Gary Ross, Mai T. Nguyen, Russel Hirsch, Robert H. Beekman III, Leon Rovner, Prasad Devarajan
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(7-8): 1058-1064
Implications of tyrosine phosphoproteomics in cervical carcinogenesis
Robinson-Bennett BL, Deford J, Diaz-Arrastia C, Levine L, Wang HQ, Hannigan EV, Papaconstantinou J.
J Carcinog (2008) 7(1): 2
Proteomic analysis of a podocyte vesicle-enriched fraction from human normal and pathological urine samples
Pierre Lescuyer, Agnès Pernin, Alexandre Hainard, Caty Bigeire, Jennifer A. Burgess, Catherine Zimmermann-Ivol, Jean-Charles Sanchez, Jürg A. Schifferli, Denis F. Hochstrasser, Solange Moll
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(7-8): 1008-1018
Characterization of the renal cyst fluid proteome in autosomal dominant polycystic kidney disease (ADPKD) patients
Xianyin Lai, Robert L. Bacallao, Bonnie L. Blazer-Yost, David Hong, Stephen B. Mason, Frank A. Witzmann
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(7-8): 1140-1152
Assessment of serum proteomics to detect large colon adenomas
Ransohoff DF, Martin C, Wiggins WS, Hitt BA, Keku TO, Galanko JA, Sandler RS.
Cancer Epidemiol Biomarkers Prev (2008) 17(8): 2188-93
Recent advances in diagnostic technologies for autoimmune diseases
Plebani M, Pittoni M, Celadin M, Bernardi D, Mion MM.
Autoimmun Rev Early Edition: published 15-Aug-2008
Proteomic analysis to improve adequacy of hemo- and peritoneal dialysis: Removal of small and high molecular weight proteins with high- and low-flux filters or a peritoneal membrane
Hassan Dihazi, Claudia A. Müller, Harry Mattes, Gerhard A. Müller
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(7-8): 1167-1182
Differential antiproliferative mechanisms of novel derivative of benzimidazo[1,2-{alpha}]quinoline in colon cancer cells depending on their p53 status
Sedic M, Poznic M, Gehrig P, Scott M, Schlapbach R, Hranjec M, Karminski-Zamola G, Pavelic K, Pavelic SK.
Mol Cancer Ther (2008) 7(7): 2121-32
Genomic and proteomic characterization of YDOV-157, a newly established human epithelial ovarian cancer cell line
Cho H, Kang ES, Hong SW, Oh YJ, Choi SM, Kim SW, Kim SH, Kim YT, Lee KS, Choi YK, Kim JH.
Mol Cell Biochem Early Edition: published 6-Aug-2008
Mycoplasma pneumoniae infection induces reactive oxygen species and DNA damage in human lung carcinoma A549 cells
Sun G, Xu X, Wang Y, Shen X, Chen Z, Yang J.
Infect Immun Early Edition: published 28-Jul-2008
CE-MS analysis of the human urinary proteome for biomarker discovery and disease diagnostics
Joshua J. Coon, Petra Zürbig, Mohammed Dakna, Anna F. Dominiczak, Stéphane Decramer, Danilo Fliser, Moritz Frommberger, Igor Golovko, David M. Good, Stefan Herget-Rosenthal, Joachim Jankowski, Bruce A. Julian, Markus Kellmann, Walter Kolch, Ziad Massy, Jan Novak, Kasper Rossing, Joost P. Schanstra, Eric Schiffer, Dan Theodorescu, Raymond Vanholder, Eva M. Weissinger, Harald Mischak, Philippe Schmitt-Kopplin
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(7-8): 964-973
Analysis of the urine proteome in patients with pancreatic ductal adenocarcinoma
Mark E. Weeks, Deepak Hariharan, Ljiljana Petronijevic, Tomasz P. Radon, Hannah J. Whiteman, Hemant M. Kocher, John F. Timms, Nicholas R. Lemoine, Tatjana Crnogorac-Jurcevic
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(7-8): 1047-1057
Protein Profiling of Human Breast Tumor Cells Identifies Novel Biomarkers
Associated with Molecular Subtypes
Mol Cell Proteomics (2008) 7(8): 1420-1433
Cell surface proteomics identifies molecules functionally linked to tumor cell intravasation
Conn EM, Madsen MA, Cravatt BF, Ruf W, Deryugina EI, Quigley JP.
J Biol Chem Early Edition: published 24-Jul-2008
Potential Biomarkers of Acute Cerebral Infarction Detected by SELDI-TOF-MS
Zhang X, Guo T, Wang H, He W, Mei H, Hong M, Yu J, Hu Y, Song S.
Am J Clin Pathol (2008) 130(2): 299-304
Biomarker discovery in psychiatric disorders
Emanuel Schwarz, Sabine Bahn
ELECTROPHORESIS (2008) 29(13): 2884-2890
Applying Proteomic-Based Biomarker Tools for the Accurate Diagnosis of Pancreatic Cancer
Kojima K, Asmellash S, Klug CA, Grizzle WE, Mobley JA, Christein JD.
J Gastrointest Surg Early Edition: published 15-Aug-2008
Proteins and protein fragments in nephrotic syndrome: Clusters, specificity and mechanisms
Giovanni Candiano, Maurizio Bruschi, Andrea Petretto, Laura Santucci, Piero Del Boccio, Andrea Urbani, Elisabetta Bertoni, Rosanna Gusmano, Maurizio Salvadori, Francesco Scolari, Gian Marco Ghiggeri
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(7-8): 956-963
Proteomics in animal models of Alzheimer's and Parkinson's diseases
Sowell RA, Owen JB, Allan Butterfield D.
Ageing Res Rev Early Edition: published 18-Jul-2008
Proteomic Analysis of Conditioned Media from the PC3, LNCaP, and 22Rv1 Prostate Cancer Cell Lines: Discovery and Validation of Candidate Prostate Cancer Biomarkers
Girish Sardana, Klaus Jung, Carsten Stephan, and Eleftherios P. Diamandis
JOURNAL OF PROTEOME RESEARCH (2008) 7(08): 3329-3338
Profiling of serum and tissue high abundance acute-phase proteins of patients with epithelial and germ line ovarian carcinoma
Chen Y, Lim BK, Peh SC, Abdul-Rahman PS, Hashim OH.
Proteome Science (2008) 6(1): 20
Quantitative proteomic analysis to discover potential diagnostic markers and therapeutic targets in human renal cell carcinoma
Noboru Okamura, Taro Masuda, Akinobu Gotoh, Toshiro Shirakawa, Shuji Terao, Naoki Kaneko, Kazuki Suganuma, Makoto Watanabe, Toshiya Matsubara, Ryota Seto, Jun Matsumoto, Megumi Kawakami, Motohiro Yamamori, Tsutomu Nakamura, Tatsurou Yagami, Toshiyuki Sakaeda, Masato Fujisawa, Osamu Nishimura, Katsuhiko Okumura
PROTEOMICS (2008) 8(15): 3194-3203
Infections and autoimmune thyroid diseases: Parallel detection of antibodies against pathogens with proteomic technology
Tozzoli R, Barzilai O, Ram M, Villalta D, Bizzaro N, Sherer Y, Shoenfeld Y.
Autoimmun Rev Early Edition: published 9-Aug-2008
Urinary proteomics: towards biomarker discovery, diagnostics and prognostics
Thongboonkerd V.
Mol Biosyst (2008) 4(8): 810-5
Analysis of molecular forms of albumin in urine
Glen L. Hortin, Denis Sviridov
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(7-8): 950-955
Breast cancer cells exhibit selective modulation induced by different collagen substrates
Pucci-Minafra I, Albanese NN, Di Cara G, Minafra L, Marabeti MR, Cancemi P.
Connect Tissue Res (2008) 49(3): 252-6
Annexin II Overexpression Predicts Rapid Recurrence after Surgery in Pancreatic Cancer Patients Undergoing Gemcitabine-Adjuvant Chemotherapy
Takano S, Togawa A, Yoshitomi H, Shida T, Kimura F, Shimizu H, Yoshidome H, Ohtsuka M, Kato A, Tomonaga T, Nomura F, Miyazaki M.
Ann Surg Oncol Early Edition: published 20-Aug-2008
Increased expression of one isoform of leucine-rich alpha-2-glycoprotein in peritoneal fluid of women with uterine leiomyomas
Ferrero S, Gillott DJ, Remorgida V, Anserini P, Ragni N, Grudzinskas JG.
Arch Gynecol Obstet Early Edition: published 30-Jul-2008
The Responses of Mitochondrial Proteome in Rat Liver to the Consumption of Moderate Ethanol: The Possible Roles of Aldo-Keto Reductases
Liang Shi, Yuan Wang, Shuyang Tu, Xiaolei Li, Maomao Sun, Sanjay Srivastava, Ningzhi Xu, Aruni Bhatnagar, and Siqi Liu
JOURNAL OF PROTEOME RESEARCH (2008) 7(08): 3137-3145
Clinical application of antibody microarray in chronic kidney disease: How far to go?
Lin-Li Lv, Bi-Cheng Liu
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(7-8): 989-996
iTRAQ analysis of complex proteome alterations in 3xTgAD Alzheimer's mice: understanding the interface between physiology and disease
Martin B, Brenneman R, Becker KG, Gucek M, Cole RN, Maudsley S.
PLoS ONE (2008) 3(7): e2750
Urinary proteomic analysis of chronic allograft nephropathy
Edmond O'Riordan, Tatyana N. Orlova, Natalia Mendelev, Daniel Patschan, Rowena Kemp, Praveen N. Chander, Rena Hu, Gang Hao, Steven S. Gross, Renato V. Iozzo, Veronica Delaney, Michael S. Goligorsky
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(7-8): 1025-1035
Targets of Caspase-6 Activity in Human Neurons and Alzheimer Disease
Guy Klaiman, Tracy L. Petzke, Jennifer Hammond, and Andrea C. LeBlanc
Mol Cell Proteomics (2008) 7(8): 1541-1555
Identification of non-Alzheimer's disease tauopathies-related proteins by proteomic analysis
Yang G, Wang L, Zhu M, Xu D.
Neurol Res (2008) 30(6): 613-22
Dendritic cell-derived interferon-?-induced protein mediates tumor necrosis factor-? stimulation of human lung fibroblasts
Wupeng Liao, Zhang Bao, Chang Cheng, Yu-Keung Mok, W. S. Fred Wong
PROTEOMICS (2008) 8(13): 2640-2650
Impairment of adolescent hippocampal plasticity in a mouse model for Alzheimer's disease precedes disease phenotype
Hartl D, Rohe M, Mao L, Staufenbiel M, Zabel C, Klose J.
PLoS ONE (2008) 3(7): e2759
Activation of complement system in adult T-cell leukemia (ATL) occurs mainly through lectin pathway: A serum proteomic approach using mass spectrometry
Ishida YI, Yamashita K, Sasaki H, Takajou I, Kubuki Y, Morishita K, Tsubouchi H, Okayama A.
Cancer Lett Early Edition: published 6-Aug-2008
Proteomic analysis of altered proteins in distal renal tubular cells in response to calcium oxalate monohydrate crystal adhesion: Implications for kidney stone disease
Theptida Semangoen, Supachok Sinchaikul, Shui-Tein Chen, Visith Thongboonkerd
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(7-8): 1099-1109
Proteomic analysis of the basic proteins in 5-fluorouracil resistance of human colon cancer cell line using the radical-free and highly reducing method of two-dimensional polyacrylamide gel electrophoresis
Tanaka S, Sakai A, Kimura K, Yoshida H, Fushitani H, Ogata A, Miyamoto A, Fukushima M, Wada A, Tanigawa N.
Int J Oncol (2008) 33(2): 361-70
A proteomics approach to identify changes in protein profiles in serum of Familial Adenomatous Polyposis patients
Quaresima B, Crugliano T, Gaspari M, Faniello MC, Cosimo P, Valanzano R, Genuardi M, Cannataro M, Veltri P, Baudi F, Doldo P, Cuda G, Venuta S, Costanzo F.
Cancer Lett Early Edition: published 28-Jul-2008
Identification of phosphoproteins in kidney tissues from patients with autosomal dominant polycystic kidney disease
Yawei Liu, Bing Dai, Changlin Mei, Yan Zhang, Xishan Xiong, Richard Sandford
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(7-8): 1153-1166
Proteomic analysis of renal calculi indicates an important role for inflammatory processes in calcium stone formation
Merchant ML, Cummins T, Wilkey DW, Salyer SA, Powell DW, Klein JB, Lederer ED.
Am J Physiol Renal Physiol Early Edition: published 13-Aug-2008
Immunoproteomic analysis of the protective response obtained from vaccination with Candida albicans ecm33 cell wall mutant in mice
Raquel Martínez-López, César Nombela, Rosalía Diez-Orejas, Lucía Monteoliva, Concha Gil
PROTEOMICS (2008) 8(13): 2651-2664
Epstein-Barr virus upregulates phosphorylated heat shock protein 27 kDa in carcinoma cells using the phosphoinositide 3-kinase/Akt pathway
Yuki Fukagawa, Jun Nishikawa, Yasuhiro Kuramitsu, Dai Iwakiri, Kenzo Takada, Shousuke Imai, Masaaki Satake, Takeshi Okamoto, Masanori Fujimoto, Kiwamu Okita, Kazuyuki Nakamura, Isao Sakaida
ELECTROPHORESIS (2008) 29(15): 3192-3200
Proteomic analysis of skin invasion by blood fluke larvae
Hansell E, Braschi S, Medzihradszky KF, Sajid M, Debnath M, Ingram J, Lim KC, McKerrow JH.
PLoS Negl Trop Dis (2008) 2(7): e262
Proteomic analysis for human urinary proteins associated with arsenic intoxication
Lia-Beng Tan, Kow-Tong Chen, Yu-Chang Tyan, Pao-Chi Liao, How-Ran Guo
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(7-8): 1087-1098
Human urine biomarkers of renal cell carcinoma evaluated by ClinProt
Niccolò Bosso, Clizia Chinello, Stefano Carlo Maria Picozzi, Erica Gianazza, Veronica Mainini, Carmen Galbusera, Francesca Raimondo, Roberto Perego, Stefano Casellato, Francesco Rocco, Stefano Ferrero, Silvano Bosari, Paolo Mocarelli, Marzia Galli Kienle, Fulvio Magni
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(7-8): 1036-1046
The Identification of Potential Factors Associated with the Development of Type 2 Diabetes: A Quantitative Proteomics Approach
Hongfang Lu, Ying Yang, Emma M. Allister, Nadeeja Wijesekara, and Michael B. Wheeler
Mol Cell Proteomics (2008) 7(8): 1434-1451
Apolipoprotein A-I and platelet factor 4 are biomarkers for Infliximab response in rheumatoid arthritis
Trocmé C, Marotte H, Baillet A, Pallot-Prades B, Garin J, Grange L, Miossec P, Tebib J, Berger F, Nissen MJ, Juvin R, Morel F, Gaudin P.
Ann Rheum Dis Early Edition: published 29-Jul-2008
Genomic and Proteomic Analyses of the Methionine Sulfoxide Reductase A Knockout Mouse
Derek B. Oien, Xinkun Wang, Jackob Moskovitz
Current Proteomics (2008) 5(2): 96-103
Proteomic strategies in bladder cancer: From tissue to fluid and back
Pavel Gromov, José M. A. Moreira, Irina Gromova, Julio E. Celis
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(7-8): 974-988
Proteomic profiling of cellular targets of lipopolysaccharide-induced signalling in Nicotiana tabacum BY-2 cells
Gerber IB, Laukens K, De Vijlder T, Witters E, Dubery IA.
Biochim Biophys Acta Early Edition: published 25-Jun-2008
Proteomic and metabolic characterization of a Candida albicans mutant resistant to the antimicrobial peptide MUC7 12-mer
Lis M, Bobek LA.
FEMS Immunol Med Microbiol Early Edition: published 1-Aug-2008
Application of comparative proteome analysis to reveal influence of cultivation conditions on asymmetric bioreduction of beta-keto ester by Saccharomyces cerevisiae
Lin J, Liu Q, Su E, Wei D, Yang S.
Appl Microbiol Biotechnol Early Edition: published 5-Aug-2008
Secretome analysis of Phanerochaete chrysosporium strain CIRM-BRFM41 grown on softwood
Ravalason H, Jan G, Mollé D, Pasco M, Coutinho PM, Lapierre C, Pollet B, Bertaud F, Petit-Conil M, Grisel S, Sigoillot JC, Asther M, Herpoël-Gimbert I.
Appl Microbiol Biotechnol (2008) 80(4): 719-33
Global Relationship between the Proteome and Transcriptome of Human Skeletal Muscle
Zhengping Yi, Benjamin P. Bowen, Hyonson Hwang, Christopher P. Jenkinson, Dawn K. Coletta, Natalie Lefort, Mandeep Bajaj, Sangeeta Kashyap, Rachele Berria, Elena A. De Filippis, and Lawrence J. Mandarino
JOURNAL OF PROTEOME RESEARCH (2008) 7(08): 3230-3241
A long-term study on female mice fed on a genetically modified soybean: effects on liver ageing
Malatesta M, Boraldi F, Annovi G, Baldelli B, Battistelli S, Biggiogera M, Quaglino D.
Histochem Cell Biol Early Edition: published 22-Jul-2008
Proteomic analysis of mononuclear cells of patients with minimal-change nephrotic syndrome of childhood
González E, Neuhaus T, Kemper MJ, Girardin E.
Nephrol Dial Transplant Early Edition: published 12-Aug-2008
Proteomics reveals novel Drosophila seminal fluid proteins transferred at mating
Findlay GD, Yi X, Maccoss MJ, Swanson WJ.
PLoS Biol (2008) 6(7): e178
Differential proteomics in the aging Noble rat ventral prostate
Ying Wai Lam, Neville N. C. Tam, James E. Evans, Karin M. Green, Xiang Zhang, Shuk-Mei Ho
PROTEOMICS (2008) 8(13): 2750-2763
Inhibitors of protein glycosylation or secretion change the pattern of extracellular proteins in suspension-cultured cells of Arabidopsis thaliana
Luczak M, Bugajewska A, Wojtaszek P.
Plant Physiol Biochem Early Edition: published 19-Jun-2008
Proteome Analysis of Tea Pollen (Camellia sinensis) under Different Storage Conditions
Li J, Chen J, Zhang Z, Pan Y.
J Agric Food Chem (2008) 56(16): 7535-44
Current status of systems biology in Aspergilli
Andersen MR, Nielsen J.
Fungal Genet Biol Early Edition: published 19-Jul-2008
Proteomic analysis of peanut seed storage proteins and genetic variation in a potential peanut allergen
Guo B, Liang X, Chung SY, Holbrook CC, Maleki SJ.
Protein Pept Lett (2008) 15(6): 567-77
Characterization of metalloprotease cleavage products of human articular cartilage
Zhen EY, Brittain IJ, Laska DA, Mitchell PG, Sumer EU, Karsdal MA, Duffin KL.
Arthritis Rheum (2008) 58(8): 2420-2431
Analysis of molecular forms of albumin in urine
Glen L. Hortin, Denis Sviridov
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(7-8): 950-955
Mass Spectrometry Analysis of Proteome-Wide Proteolytic Post-Translational Degradation of Proteins
Yufeng Shen, Kim K. Hixson, Nikola Tolić, David G. Camp, Samuel O. Purvine, Ronald J. Moore, and Richard D. Smith
ANALYTICAL CHEMISTRY (2008) 80(15): 5819-5828
Proteomic analysis of parasitized Plutella xylostella larvae plasma
Song KH, Jung MK, Eum JH, Hwang IC, Han SS.
J Insect Physiol Early Edition: published 10-Jul-2008
Characterization of the Mouse Pancreatic Islet Proteome and Comparative Analysis with Other Mouse Tissues
Vladislav A. Petyuk, Wei-Jun Qian, Charlotte Hinault, Marina A. Gritsenko, Mudita Singhal, Matthew E. Monroe, David G. Camp II, Rohit N. Kulkarni, and Richard D. Smith
JOURNAL OF PROTEOME RESEARCH (2008) 7(08): 3114-3126
Genomic and proteomic profiling of oxidative stress response in human diploid fibroblasts
Xie L, Pandey R, Xu B, Tsaprailis G, Chen QM.
Biogerontology Early Edition: published 25-Jul-2008
Proteomics in Trypanosoma cruzi - localization of novel proteins to various organelles
Marcela Ferella, Daniel Nilsson, Hamid Darban, Claudia Rodrigues, Esteban J. Bontempi, Roberto Docampo, Björn Andersson
PROTEOMICS (2008) 8(13): 2735-2749
The platelet release reaction: just when you thought platelet secretion was simple
Ren Q, Ye S, Whiteheart SW.
Curr Opin Hematol (2008) 15(5): 537-41
A pivotal role for heat shock protein 90 in Ewing sarcoma resistance to anti-insulin-like growth factor 1 receptor treatment: in vitro and in vivo study
Martins AS, Ordoñez JL, GarcÃa-Sánchez A, Herrero D, Sevillano V, Osuna D, Mackintosh C, Caballero G, Otero AP, Poremba C, Madoz-Gúrpide J, de Alava E.
Cancer Res (2008) 68(15): 6260-70
The urinary proteome in diabetes and diabetes-associated complications: New ways to assess disease progression and evaluate therapy
Kasper Rossing, Harald Mischak, Peter Rossing, Joost P. Schanstra, Alex Wiseman, David M. Maahs
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(7-8): 997-1007
Infections and autoimmune thyroid diseases: Parallel detection of antibodies against pathogens with proteomic technology
Tozzoli R, Barzilai O, Ram M, Villalta D, Bizzaro N, Sherer Y, Shoenfeld Y.
Autoimmun Rev Early Edition: published 9-Aug-2008
Quantitative whole-cell proteome analysis of pseudorabies virus infected cells
Skiba M, Mettenleiter TC, Karger A.
J Virol Early Edition: published 23-Jul-2008
The urine proteome as a biomarker of radiation injury
Mukut Sharma, Brian D. Halligan, Bassam T. Wakim, Virginia J. Savin, Eric P. Cohen, John E. Moulder
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(7-8): 1065-1086
A proteomic approach to immune-mediated epithelial-mesenchymal transition
Ronan Feighery, Patricia Maguire, Michael P. Ryan, Tara McMorrow
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(7-8): 1110-1117
Integrated strong cation exchange/capillary reversed-phase liquid chromatography/on-target digestion coupled with mass spectrometry for identification of intact human liver tissue proteins
Gao M, Yu W, Zhang Y, Yan G, Deng C, Yang P, Zhang X.
Analyst (2008) 133(9): 1261-7
Trypsin digest coupled with two-dimensional shotgun proteomics reveals the involvement of multiple signaling pathways in functional remodeling of late-gestation uteri in rats
Guan-Yuan Chen, Shu-Hui Chen, Chen-Hsiang Yu, Sheng-Yu Huang, Mei-Ling Tsai
PROTEOMICS (2008) 8(15): 3173-3184
CE-MS analysis of the human urinary proteome for biomarker discovery and disease diagnostics
Joshua J. Coon, Petra Zürbig, Mohammed Dakna, Anna F. Dominiczak, Stéphane Decramer, Danilo Fliser, Moritz Frommberger, Igor Golovko, David M. Good, Stefan Herget-Rosenthal, Joachim Jankowski, Bruce A. Julian, Markus Kellmann, Walter Kolch, Ziad Massy, Jan Novak, Kasper Rossing, Joost P. Schanstra, Eric Schiffer, Dan Theodorescu, Raymond Vanholder, Eva M. Weissinger, Harald Mischak, Philippe Schmitt-Kopplin
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(7-8): 964-973
Differentially Expressed Protein Profile of Human Dental Pulp Cells in the Early Process of Odontoblast-like Differentiation In Vitro
Wei X, Wu L, Ling J, Liu L, Liu S, Liu W, Li M, Xiao Y.
J Endod (2008) 34(9): 1077-84
Identification of phosphoproteins in kidney tissues from patients with autosomal dominant polycystic kidney disease
Yawei Liu, Bing Dai, Changlin Mei, Yan Zhang, Xishan Xiong, Richard Sandford
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(7-8): 1153-1166
Aberrant expression of developmentally important signaling molecules in cloned porcine extraembryonic tissues
Jung-Il Chae, Kweon Yu, Seong-Keun Cho, Jin-Hoi Kim, Deog-Bon Koo, Kyung-Kwang Lee, Yong-Mahn Han
PROTEOMICS (2008) 8(13): 2724-2734
The sea urchin (Strongylocentrotus purpuratus) test and spine proteomes
Mann K, Poustka AJ, Mann M.
Proteome Science (2008) 6(1): 22
Discrimination of Penicillium isolates by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry fingerprinting
Justin M. Hettick, Brett J. Green, Amanda D. Buskirk, Michael L. Kashon, James E. Slaven, Erika Janotka, Francoise M. Blachere, Detlef Schmechel, Donald H. Beezhold
Rapid Communications in Mass Spectrometry (2008) 22(16): 2555-2560
Proteome changes in the skin of the grape cultivar Barbera among different stages of ripening
Negri AS, Prinsi B, Rossoni M, Failla O, Scienza A, Cocucci M, Espen L.
BMC Genomics (2008) 9(1): 378
Clinical application of antibody microarray in chronic kidney disease: How far to go?
Lin-Li Lv, Bi-Cheng Liu
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(7-8): 989-996
A proteomic approach to the identification of tegumental proteins of male and female Schistosoma bovis worms
Pérez-Sánchez R, Valero ML, Ramajo-Hernández A, Siles-Lucas M, Ramajo-MartÃn V, Oleaga A.
Mol Biochem Parasitol (2008) 161(2): 112-23
Proteomic strategies in bladder cancer: From tissue to fluid and back
Pavel Gromov, José M. A. Moreira, Irina Gromova, Julio E. Celis
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(7-8): 974-988
Proteomic analysis of undiluted lung epithelial lining fluid
Kipnis E, Hansen K, Sawa T, Moriyama K, Zurawel A, Ishizaka A, Wiener-Kronish J.
Chest (2008) 134(2): 338-45
Proteomic analysis of altered proteins in distal renal tubular cells in response to calcium oxalate monohydrate crystal adhesion: Implications for kidney stone disease
Theptida Semangoen, Supachok Sinchaikul, Shui-Tein Chen, Visith Thongboonkerd
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(7-8): 1099-1109
The proteome of Toxoplasma gondii: integration with the genome provides novel insights into gene expression and annotation
Xia D, Sanderson SJ, Jones AR, Prieto JH, Yates JR 3rd, Bromley E, Tomley FM, Lal K, Sinden RE, Brunk BP, Roos DS, Wastling JM.
Genome Biol (2008) 9(7): R116
Characterization of the renal cyst fluid proteome in autosomal dominant polycystic kidney disease (ADPKD) patients
Xianyin Lai, Robert L. Bacallao, Bonnie L. Blazer-Yost, David Hong, Stephen B. Mason, Frank A. Witzmann
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(7-8): 1140-1152
Feeder-free Monolayer Cultures of Human Embryonic Stem Cells Express an Epithelial Plasma Membrane Protein Profile
Van Hoof D, Braam SR, Dormeyers W, Ward-van Oostwaard D, Heck AJ, Krijgsveld J, Mummery CL.
Stem Cells Early Edition: published 14-Aug-2008
Amyloidogenic and Associated Proteins in Systemic Amyloidosis Proteome of Adipose Tissue
Francesca Lavatelli, David H. Perlman, Brian Spencer, Tatiana Prokaeva, Mark E. McComb, Roger Theberge, Lawreen H. Connors, Vittorio Bellotti, David C. Seldin, Giampaolo Merlini, Martha Skinner, and Catherine E. Costello
Mol Cell Proteomics (2008) 7(8): 1570-1583
Expressed sequence tags and proteomics of antennae from the tortricid moth, Epiphyas postvittana
Jordan MD, Stanley D, Marshall SD, De Silva D, Crowhurst RN, Gleave AP, Greenwood DR, Newcomb RD.
Insect Mol Biol (2008) 17(4): 361-73
MS-based phenotypic characterization of a human blood protein from urinary waste products
Urban A. Kiernan, Lisa Hernandez, Eric E. Niederkofler, Kemmons A. Tubbs, Randall W. Nelson
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(7-8): 1019-1024
Proteomic approach to identify candidate effector molecules during the in vitro immune exclusion of infective Teladorsagia circumcincta in the abomasum of sheep
Athanasiadou S, Pemberton A, Jackson F, Inglis N, Miller HR, Thévenod F, Mackellar A, Huntley JF.
Vet Res (2008) 39(6): 58
Exploring the nuclear proteome of Medicago truncatula at the switch towards seed filling
Repetto O, Rogniaux H, Firnhaber C, Zuber H, Küster H, Larré C, Thompson R, Gallardo K.
Plant J Early Edition: published 4-Jul-2008
Proteomic analysis of human proximal tubular cells exposed to high glucose concentrations
Eun-Jeong So, Hyun-Jung Kim, Chan-Wha Kim
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(7-8): 1118-1126
Proteomic Analysis of Exosomes from Human Neural Stem Cells by Flow Field-Flow Fractionation and Nanoflow Liquid Chromatography−Tandem Mass Spectrometry
Dukjin Kang, Sunok Oh, Sung-Min Ahn, Bong-Hee Lee, and Myeong Hee Moon
JOURNAL OF PROTEOME RESEARCH (2008) 7(08): 3475-3480
Physical and computational analysis of the yeast Kluyveromyces lactis secreted proteome
Catherine L. Swaim, Brian P. Anton, Shamik S. Sharma, Christopher H. Taron, Jack S. Benner
PROTEOMICS (2008) 8(13): 2714-2723
Using Proteomics, Immunohistology, and Atomic Force Microscopy To Characterize Surface Damage to Lambskins Observed after Enzymatic Dewooling
Edmonds RL, Deb Choudhury S, Haverkamp RG, Birtles M, Allsop TF, Norris GE.
J Agric Food Chem (2008) 56(17): 7934-41
Differential proteomic analysis of bovine conceptus fluid proteins in pregnancies generated by assisted reproductive technologies
George A. Riding, Jonathan R. Hill, Alun Jones, Michael K. Holland, Peter F. Josh, Sigrid A. Lehnert
PROTEOMICS (2008) 8(14): 2967-2982
Proteomic analysis of hypoxia-induced tube breakdown of an in vitro capillary model composed of HUVECs: Potential role of p38-regulated reduction of HSP27
Ryoji Eguchi, Hirotaka Naitou, Kazuhiro Kunimasa, Rie Ayuzawa, Yoshihiro Fujimori, Norio Ohashi, Kazuhiko Kaji, Toshiro Ohta
PROTEOMICS (2008) 8(14): 2897-2906
Capillary electrophoresis-mass spectrometry in urinary proteome analysis: current applications and future developments
Metzger J, Schanstra JP, Mischak H.
Anal Bioanal Chem Early Edition: published 15-Aug-2008
Proteomic analysis to improve adequacy of hemo- and peritoneal dialysis: Removal of small and high molecular weight proteins with high- and low-flux filters or a peritoneal membrane
Hassan Dihazi, Claudia A. Müller, Harry Mattes, Gerhard A. Müller
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(7-8): 1167-1182
Proteomic analysis for human urinary proteins associated with arsenic intoxication
Lia-Beng Tan, Kow-Tong Chen, Yu-Chang Tyan, Pao-Chi Liao, How-Ran Guo
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(7-8): 1087-1098
Potato skin proteome is enriched with plant defence components
Barel G, Ginzberg I.
J Exp Bot (2008) 59(12): 3347-57
Proteomic Study of Biocontrol Mechanisms of Trichoderma harzianum ETS 323 in Response to Rhizoctonia solani
Tseng SC, Liu SY, Yang HH, Lo CT, Peng KC.
J Agric Food Chem (2008) 56(16): 6914-22
Analysis of the urine proteome in patients with pancreatic ductal adenocarcinoma
Mark E. Weeks, Deepak Hariharan, Ljiljana Petronijevic, Tomasz P. Radon, Hannah J. Whiteman, Hemant M. Kocher, John F. Timms, Nicholas R. Lemoine, Tatjana Crnogorac-Jurcevic
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(7-8): 1047-1057
Proteomic analysis of a podocyte vesicle-enriched fraction from human normal and pathological urine samples
Pierre Lescuyer, Agnès Pernin, Alexandre Hainard, Caty Bigeire, Jennifer A. Burgess, Catherine Zimmermann-Ivol, Jean-Charles Sanchez, Jürg A. Schifferli, Denis F. Hochstrasser, Solange Moll
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(7-8): 1008-1018
Immunoproteomic analysis of the protective response obtained from vaccination with Candida albicans ecm33 cell wall mutant in mice
Raquel Martínez-López, César Nombela, Rosalía Diez-Orejas, Lucía Monteoliva, Concha Gil
PROTEOMICS (2008) 8(13): 2651-2664
Proteomic identification of the silkworm (Bombyx mori L) prothoracic glands during the fifth instar stage
Wu XF, Li XH, Yue WF, Roy B, Li GL, Liu JM, Zhong BX, Gao QK, David WC, Miao YG.
Biosci Rep Early Edition: published 20-Aug-2008
Human urine biomarkers of renal cell carcinoma evaluated by ClinProt
Niccolò Bosso, Clizia Chinello, Stefano Carlo Maria Picozzi, Erica Gianazza, Veronica Mainini, Carmen Galbusera, Francesca Raimondo, Roberto Perego, Stefano Casellato, Francesco Rocco, Stefano Ferrero, Silvano Bosari, Paolo Mocarelli, Marzia Galli Kienle, Fulvio Magni
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(7-8): 1036-1046
Elevation of apolipoprotein A-I and apolipoprotein H levels in the vitreous fluid and overexpression in the retina of diabetic patients
Simó R, Higuera M, GarcÃa-RamÃrez M, Canals F, GarcÃa-Arumà J, Hernández C.
Arch Ophthalmol (2008) 126(8): 1076-81
Comparative Proteomics Analysis Reveals an Intimate Protein Network
Provoked by Hydrogen Peroxide Stress in Rice Seedling Leaves
Mol Cell Proteomics (2008) 7(8): 1469-1488
Proteome and phosphoproteome analysis of starch granule-associated proteins from normal maize and mutants affected in starch biosynthesis
Grimaud F, Rogniaux H, James MG, Myers AM, Planchot V.
J Exp Bot (2008) 59(12): 3395-406
Evaluation of two cell surface modification methods for proteomic analysis of plasma membrane from isolated mouse hepatocytes
Li X, Jin Q, Cao J, Xie C, Cao R, Liu Z, Xiong J, Li J, Yang X, Chen P, Liang S.
Biochim Biophys Acta Early Edition: published 28-Jul-2008
Comparative Proteomics Analysis Reveals an Intimate Protein Network Provoked by Hydrogen Peroxide Stress in Rice Seedling Leaves
Xiang-Yuan Wan and Jin-Yuan Liu
Mol Cell Proteomics (2008) 7(8): 1469-1488
Proteins and protein fragments in nephrotic syndrome: Clusters, specificity and mechanisms
Giovanni Candiano, Maurizio Bruschi, Andrea Petretto, Laura Santucci, Piero Del Boccio, Andrea Urbani, Elisabetta Bertoni, Rosanna Gusmano, Maurizio Salvadori, Francesco Scolari, Gian Marco Ghiggeri
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(7-8): 956-963
Urinary proteomic analysis of chronic allograft nephropathy
Edmond O'Riordan, Tatyana N. Orlova, Natalia Mendelev, Daniel Patschan, Rowena Kemp, Praveen N. Chander, Rena Hu, Gang Hao, Steven S. Gross, Renato V. Iozzo, Veronica Delaney, Michael S. Goligorsky
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(7-8): 1025-1035
Proteomic analysis of larvae during development, attachment, and metamorphosis in the fouling barnacle, Balanus amphitrite
Vengatesen Thiyagarajan, Pei-Yuan Qian
PROTEOMICS (2008) 8(15): 3164-3172
Autoantibody profiling on high-density protein microarrays for biomarker discovery in the cerebrospinal fluid
Roche S, Dauvilliers Y, Tiers L, Couderc C, Piva MT, Provansal M, Gabelle A, Lehmann S.
J Immunol Methods Early Edition: published 23-Jul-2008
Proteomic profiling of neuromas reveals alterations in protein composition and local protein synthesis in hyper-excitable nerves
Huang HL, Cendan CM, Roza C, Okuse K, Cramer R, Timms JF, Wood JN.
Mol Pain (2008) 4(1): 33
Genomic and proteomic characterization of YDOV-157, a newly established human epithelial ovarian cancer cell line
Cho H, Kang ES, Hong SW, Oh YJ, Choi SM, Kim SW, Kim SH, Kim YT, Lee KS, Choi YK, Kim JH.
Mol Cell Biochem Early Edition: published 6-Aug-2008
Proteomic analysis of the knob-producing nematode-trapping fungus Monacrosporium lysipagum
Khan A, Williams KL, Soon J, Nevalainen HK.
Mycol Res Early Edition: published 2-Jul-2008
Proteomic analysis of CTGF-activated lung fibroblasts: identification of IQGAP1 as a key player in lung fibroblast migration
Bogatkevich GS, Ludwicka-Bradley A, Singleton CB, Bethard JR, Silver RM.
Am J Physiol Lung Cell Mol Physiol Early Edition: published 1-Aug-2008
Proteomic analysis of human breast cell lines using SELDI-TOF MS shows that mixtures of estrogenic compounds exhibit simple similar action (concentration additivity)
Zhu Z, Edwards RJ, Boobis AR.
Toxicol Lett Early Edition: published 15-Jul-2008
Use of shotgun proteomics for the identification, confirmation, and correction of C. elegans gene annotations
Merrihew GE, Davis C, Ewing B, Williams G, Kall L, Frewen BE, Noble WS, Green P, Thomas JH, Maccoss MJ.
Genome Res Early Edition: published 24-Jul-2008
The glomerular proteome in a model of chronic kidney disease
Sebastian A. Potthoff, Barbara Sitek, Johannes Stegbauer, Thomas Schulenborg, Katrin Marcus, Ivo Quack, Lars C. Rump, Helmut E. Meyer, Kai Stühler, Oliver Vonend
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(7-8): 1127-1139
Proteomic characterization of freeze-dried human plasma: providing treatment of bleeding disorders without the need for a cold chain
Steil L, Thiele T, Hammer E, Bux J, Kalus M, Völker U, Greinacher A.
Transfusion Early Edition: published 22-Jul-2008
Cross-species Global Proteomics Reveals Conserved and Unique Processes in Phytophthora sojae and Phytophthora ramorum
Alon Savidor, Ryan S. Donahoo, Oscar Hurtado-Gonzales, Miriam L. Land, Manesh B. Shah, Kurt H. Lamour, and W. Hayes McDonald
Mol Cell Proteomics (2008) 7(8): 1501-1516
Proteomic analysis of differential protein expression in rat platelets treated with notoginsengnosides
Yao Y, Wu WY, Guan SH, Jiang BH, Yang M, Chen XH, Bi KS, Liu X, Guo DA.
Phytomedicine Early Edition: published 13-Aug-2008
Proteome analysis of human dorsolateral prefrontal cortex using shotgun mass spectrometry
Martins-de-Souza D, Gattaz WF, Schmitt A, Rewerts C, Maccarrone G, Dias-Neto E, Turck CW.
J Sep Sci Early Edition: published 11-Aug-2008
Differential protein expression during aging in ventricular myocardium of Fischer 344xBrown Norway hybrid rats
Richardson MR, Lai X, Mason SB, Miller SJ, Witzmann FA.
Exp Gerontol Early Edition: published 15-Jul-2008
Using proteomics to identify preprocedural risk factors for contrast induced nephropathy
Michael R. Bennett, Neelima Ravipati, Gary Ross, Mai T. Nguyen, Russel Hirsch, Robert H. Beekman III, Leon Rovner, Prasad Devarajan
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(7-8): 1058-1064
Membrane protein analysis of human breast cancer cell line MCF-7 by different membrane washing methods
Ruan Y, Pei W, Wan M.
Cell Biochem Funct Early Edition: published 13-Aug-2008
Proteomic analysis of fructose-induced fatty liver in hamsters
Zhang L, Perdomo G, Kim DH, Qu S, Ringquist S, Trucco M, Dong HH.
Metabolism (2008) 57(8): 1115-24