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SPS' DigestIssue 55, 3-Oct-2008 |
The Knowledge-Integrated Network Biomarkers Discovery for Major Adverse Cardiac Events
Guangxu Jin, Xiaobo Zhou, Honghui Wang, Hong Zhao, Kemi Cui, Xiang-Sun Zhang, Luonan Chen, Stanley L. Hazen, King Li, and Stephen T. C. Wong
JOURNAL OF PROTEOME RESEARCH (2008) 7(9): 4013-4021
NITPICK: peak identifcation for mass spectrometry data
Bernhard Y Renard, Marc Kirchner, Hanno Steen, Judith A J Steen and Fred A Hamprecht
BMC Bioinformatics (2008) 9(1): 355
GlycoMiner: a new software tool to elucidate glycopeptide composition
Ozohanics O, Krenyacz J, Ludányi K, Pollreisz F, Vékey K, Drahos L.
Rapid Commun Mass Spectrom (2008) 22(20): 3245-3254
DirecTag: Accurate Sequence Tags from Peptide MS/MS through Statistical Scoring
David L. Tabb, Ze-Qiang Ma, Daniel B. Martin, Amy-Joan L. Ham, and Matthew C. Chambers
JOURNAL OF PROTEOME RESEARCH (2008) 7(9): 3838-3846
Robust Prediction of the MASCOT Score for an Improved Quality Assessment in Mass Spectrometric Proteomics
Thomas Koenig, Bjoern H. Menze, Marc Kirchner, Flavio Monigatti, Kenneth C. Parker, Thomas Patterson, Judith Jebanathirajah Steen, Fred A. Hamprecht, and Hanno Steen
JOURNAL OF PROTEOME RESEARCH (2008) 7(9): 3708-3717
The Future of Large-Scale Collaborative Proteomics
Dowsey, A.W.; Guang-Zhong Yang
Proceedings of the IEEE (2008) 96(8): 1292-1309
The use of Gene Ontology terms for predicting highly-connected 'hub' nodes in protein-protein interaction networks
Hsing M, Byler KG, Cherkasov A.
BMC Syst Biol (2008) 2(1): 80
Message-passing algorithms for the prediction of protein domain interactions from protein-protein interaction data
Mudassar Iqbal, Alex A. Freitas, Colin G. Johnson, and Massimo Vergassola
Bioinformatics (2008) 24(18): 2064-2070
Cancer informatics by prototype networks in mass spectrometry
Schleif FM, Villmann T, Kostrzewa M, Hammer B, Gammerman A.
Artif Intell Med Early Edition: published 6-Sep-2008
GabiPD: the GABI primary database--a plant integrative 'omics' database
Riaño-Pachón DM, Nagel A, Neigenfind J, Wagner R, Basekow R, Weber E, Mueller-Roeber B, Diehl S, Kersten B.
Nucl Acids Res Early Edition: published 23-Sep-2008
Toward an Interaction Map of the Two-Component Signaling Pathway of Arabidopsis thaliana
Hakan Dortay, Nijuscha Gruhn, Andreas Pfeifer, Mareike Schwerdtner, Thomas Schmülling, and Alexander Heyl
JOURNAL OF PROTEOME RESEARCH (2008) 7(9): 3649-3660
An algorithm for thorough background subtraction from high-resolution LC/MS data: application to the detection of troglitazone metabolites in rat plasma, bile, and urine
Haiying Zhang, Li Ma, Kan He, Mingshe Zhu
Journal of Mass Spectrometry (2008) 43(9): 1191-1200
MitoP2: An Integrative Tool for the Analysis of the Mitochondrial Proteome
Elstner M, Andreoli C, Ahting U, Tetko I, Klopstock T, Meitinger T, Prokisch H.
Mol Biotechnol Early Edition: published 9-Sep-2008
Precursor-Ion Mass Re-Estimation Improves Peptide Identification on Hybrid Instruments
Roland Luethy, Darren E. Kessner, Jonathan E. Katz, Brendan MacLean, Robert Grothe, Kian Kani, Vitor Faça, Sharon Pitteri, Samir Hanash, David B. Agus, and Parag Mallick
JOURNAL OF PROTEOME RESEARCH (2008) 7(9): 4031-4039
Peptide Finder: mapping measured molecular masses to peptides and proteins
Anastasia Alexandridou, George Th. Tsangaris, Konstantinos Vougas, Konstantina Nikita, and George Spyrou
Bioinformatics (2008) 24(19): 2267-2269
Nonlinear Fitting Method for Determining Local False Discovery Rates from Decoy Database Searches
Wilfred H. Tang, Ignat V. Shilov, and Sean L. Seymour
JOURNAL OF PROTEOME RESEARCH (2008) 7(9): 3661-3667
Uncharacterized/hypothetical proteins in biomedical 'omics' experiments: is novelty being swept under the carpet?
Krzysztof Pawlowski
Brief Funct Genomic Proteomic (2008) 7(4): 283-290
An Optimized Predictive Strategy for Interactome Mapping
Martin J. A. Aryee and John Quackenbush
JOURNAL OF PROTEOME RESEARCH (2008) 7(9): 4089-4094
Calculating absolute and relative protein abundance from mass spectrometry-based protein expression data
Vogel C, Marcotte EM.
Nat Protoc (2008) 3(9): 1444-51
An algorithm for thorough background subtraction from high-resolution LC/MS data: application for detection of glutathione-trapped reactive metabolites
Haiying Zhang, Yanou Yang
Journal of Mass Spectrometry (2008) 43(9): 1181-1190
Proteomics of Multigenic Families from Species Underrepresented in Databases: The Case of Loquat (Eriobotrya japonica Lindl.) Polyphenol Oxidases
Susana Sellés-Marchart, Ignacio Luque, Juan Casado-Vela, Maria José Martínez-Esteso, and Roque Bru-Martínez
JOURNAL OF PROTEOME RESEARCH (2008) 7(9): 4095-4106
Caititu: A tool to graphically represent peptide sequence coverage and domain distribution
Paulo C. Carvalho, Magno Junqueira, Richard H. Valente and Gilberto B. Domont
Journal of Proteomics (2008) 71(4): 486-489
Interspecies data mining to predict novel ING-protein interactions in human
Gordon PM, Soliman MA, Bose P, Trinh Q, Sensen CW, Riabowol K.
BMC Genomics (2008) 9(1): 426
SeMoP: A New Computational Strategy for the Unrestricted Search for Modified Peptides Using LC−MS/MS Data
Christian Baumgartner, Tomas Rejtar, Majlinda Kullolli, Lakshmi Manohar Akella, and Barry L. Karger
JOURNAL OF PROTEOME RESEARCH (2008) 7(9): 4199-4208
Comparison of algorithms for pre-processing of SELDI-TOF mass spectrometry data
Alejandro Cruz-Marcelo, Rudy Guerra, Marina Vannucci, Yiting Li, Ching C. Lau, and Tsz-Kwong Man
Bioinformatics (2008) 24(19): 2129-2136
High-performance signal peptide prediction based on sequence alignment techniques
Karl Frank and Manfred J. Sippl
Bioinformatics (2008) 24(19): 2172-2176
The Construction of a Bioactive Peptide Database in Metazoa
Feng Liu, Geert Baggerman, Liliane Schoofs, and Geert Wets
JOURNAL OF PROTEOME RESEARCH (2008) 7(9): 4119-4131
Generalized Method for Probability-based Peptide and Protein Identification from Tandem Mass Spectrometry Data and Sequence Database Searching
Antonio Ramos-Fernandez, Alberto Paradela, Rosana Navajas, and Juan Pablo Albar
Mol Cell Proteomics (2008) 7(9): 1748-1754
A systematic methodology for proteome-wide identification of peptides inhibiting the proliferation and migration of endothelial cells
Karagiannis ED, Popel AS.
Proc Natl Acad Sci U S A Early Edition: published 9-Sep-2008
An integrated approach for automating validation of extracted ion chromatographic peaks
William D. Nelson, Kert Viele, and Bert C. Lynn
Bioinformatics (2008) 24(18): 2103-2104
Proteome-wide prediction of PKA phosphorylation sites in eukaryotic kingdom
Gao X, Jin C, Ren J, Yao X, Xue Y.
Genomics Early Edition: published 22-Sep-2008
The Proteomic Constraint and its role in molecular evolution
Massey SE.
Mol Biol Evol Early Edition: published 22-Sep-2008
How Much Peptide Sequence Information Is Contained in Ion Trap Tandem Mass Spectra?
Cox J, Hubner NC, Mann M.
J Am Soc Mass Spectrom Early Edition: published 7-Aug-2008
The correlation between cellular size and protein expression levels - Normalization for global protein profiling
Emma Lundberg, Marcus Gry, Per Oksvold, Juha Kononen, Helene Andersson-Svahn, Fredrik Pontén, Mathias Uhlén and Anna Asplund
Journal of Proteomics (2008) 71(4): 448-460
Halobacterium salinarum NRC-1 PeptideAtlas: Toward Strategies for Targeted Proteomics and Improved Proteome Coverage
Phu T. Van, Amy K. Schmid, Nichole L. King, Amardeep Kaur, Min Pan, Kenia Whitehead, Tie Koide, Marc T. Facciotti, Young Ah Goo, Eric W. Deutsch, David J. Reiss, Parag Mallick, and Nitin S. Baliga
JOURNAL OF PROTEOME RESEARCH (2008) 7(9): 3755-3764
GPS 2.0, a Tool to Predict Kinase-specific Phosphorylation Sites in Hierarchy
Yu Xue, Jian Ren, Xinjiao Gao, Changjiang Jin, Longping Wen, and Xuebiao Yao
Mol Cell Proteomics (2008) 7(9): 1598-1608
The protein information and property explorer: an easy-to-use, rich-client web application for the management and functional analysis of proteomic data
H. Ramos, P. Shannon, and R. Aebersold
Bioinformatics (2008) 24(18): 2110-2111
Proteomic Analysis of Recombinant Saccharomyces cerevisiae Upon Iron Deficiency Induced via Human H-Ferritin Production
Seo HY, Chang YJ, Chung YJ, Kim KS.
J Microbiol Biotechnol (2008) 18(8): 1368-76
Identification of components of the sigma B regulon in Listeria monocytogenes that contribute to acid and salt tolerance
Abram F, Starr E, Karatzas KA, Matlawska-Wasowska K, Boyd A, Wiedmann M, Boor KJ, Connally D, O'Byrne CP.
Appl Environ Microbiol Early Edition: published 19-Sep-2008
A longitudinal study of the protein components of marsupial milk from birth to weaning in the tammar wallaby (Macropus eugenii)
Joss JL, Molloy MP, Hinds L, Deane E.
Dev Comp Immunol Early Edition: published 5-Sep-2008
Analysis of desiccation-induced candidate phosphoproteins from Craterostigma plantagineum isolated with a modified metal oxide affinity chromatography procedure
Horst Rhrig, Tom Colby, Jrgen Schmidt, Anne Harzen, Fabio Facchinelli, Dorothea Bartels
PROTEOMICS (2008) 8(17): 3548-3560
Changes in the proteome and infectivity of Leishmania infantum induced by in vitro exposure to a nitric oxide donor
Dea-Ayuela MA, Ordoñez-Gutierrez L, Bolás-Fernández F.
Int J Med Microbiol Early Edition: published 4-Sep-2008
Global mapping of the topography and magnitude of proteolytic events in apoptosis
Dix MM, Simon GM, Cravatt BF.
Cell (2008) 134(4): 679-91
Purification and proteomic characterization of plastids from Brassica napus developing embryos
Renuka Jain, Vesna Katavic, Ganesh Kumar Agrawal, Victor M. Guzov, Jay J. Thelen
PROTEOMICS (2008) 8(16): 3397-3405
Flow cytometry-assisted purification and proteomic analysis of the corticotropes dense-core secretory granules
Daniel J. Gauthier, Jacqueline A. Sobota, Francesco Ferraro, Richard E. Mains, Claude Lazure
PROTEOMICS (2008) 8(18): 3848-3861
Comparative peptidomics of Caenorhabditis elegans versus C. briggsae by LC-MALDI-TOF MS
Husson SJ, Landuyt B, Nys T, Baggerman G, Boonen K, Clynen E, Lindemans M, Janssen T, Schoofs L.
Peptides Early Edition: published 7-Aug-2008
Snake venomics of the Brazilian pitvipers Bothrops cotiara and Bothrops fonsecai. Identification of taxonomy markers
Alexandre K. Tashima, Libia Sanz, Antonio C.M. Camargo, Solange M.T. Serrano and Juan J. Calvete
Journal of Proteomics (2008) 71(4): 473-485
A proteomic characterization of water buffalo milk fractions describing PTM of major species and the identification of minor components involved in nutrient delivery and defense against pathogens
Chiara D'Ambrosio, Simona Arena, Anna Maria Salzano, Giovanni Renzone, Luigi Ledda, Andrea Scaloni
PROTEOMICS (2008) 8(17): 3657-3666
Proteome Response to the Panneural Expression of Human Wild-Type α-Synuclein: A Drosophila Model of Parkinson’s Disease
Zhiyin Xun, Thomas C. Kaufman, and David E. Clemmer
JOURNAL OF PROTEOME RESEARCH (2008) 7(9): 3911-3921
Proteomic analysis of brain protein expression levels in NF-kappabeta p50 (-/-) homozygous knockout mice
Owen JB, Opii WO, Ramassamy C, Pierce WM, Butterfield DA.
Brain Res Early Edition: published 12-Sep-2008
A study of the Candida albicans cell wall proteome
Luis Castillo, Enrique Calvo, Ana I. Martnez, Jos Ruiz-Herrera, Eulogio Valentn, Juan A. Lopez, Rafael Sentandreu
PROTEOMICS (2008) 8(18): 3871-3881
Trypanosoma cruzi alkaline 2-DE: optimization and application to comparative proteome analysis of flagellate life stages
Magalhaes AD, Charneau S, Paba J, Guercio RA, Teixeira AR, Santana JM, Sousa MV, Ricart CA.
Proteome Science (2008) 6(1): 24
Comprehensive proteomics of Methylobacterium extorquens AM1 metabolism under single carbon and nonmethylotrophic conditions
Gundula Bosch, Elizabeth Skovran, Qiangwei Xia, Tiansong Wang, Fred Taub, Jonathan A. Miller, Mary E. Lidstrom, Murray Hackett
PROTEOMICS (2008) 8(17): 3494-3505
Consequences of C4 Differentiation for Chloroplast Membrane Proteomes in Maize Mesophyll and Bundle Sheath Cells
Wojciech Majeran, Boris Zybailov, A. Jimmy Ytterberg, Jason Dunsmore, Qi Sun, and Klaas J. van Wijk
Mol Cell Proteomics (2008) 7(9): 1609-1638
Proteomics Analysis of Kojic Acid Treated A375 Human Malignant Melanoma Cells
Jiraporn Nawarak, Rosa Huang-Liu, Shao-Hsuan Kao, Hsien-Hua Liao, Supachok Sinchaikul, Shui-Tein Chen, and Sun-Long Cheng
JOURNAL OF PROTEOME RESEARCH (2008) 7(9): 3737-3746
C-Terminal Phosphorylation of Murine Testis-Specific Histone H1t in Elongating Spermatids
Kristie L. Rose, Andra Li, Irina Zalenskaya, Yun Zhang, Emmanuel Unni, Kim C. Hodgson, Yaping Yu, Jeffrey Shabanowitz, Marvin L. Meistrich, Donald F. Hunt, and Juan Ausió
JOURNAL OF PROTEOME RESEARCH (2008) 7(9): 4070-4078
Cytokinin-induced photomorphogenesis in dark-grown Arabidopsis: a proteomic analysis
Lochmanová G, Zdráhal Z, Konecná H, Koukalová S, Malbeck J, Soucek P, Válková M, Kiran NS, Brzobohaty B.
J Exp Bot Early Edition: published 5-Sep-2008
Proteomic characterization of primary diffuse large B-cell lymphomas in the central nervous system
Li J, Okamoto H, Yin C, Jagannathan J, Takizawa J, Aoki S, Gläsker S, Rushing EJ, Vortmeyer AO, Oldfield EH, Yamanaka R, Zhuang Z.
J Neurosurg (2008) 109(3): 536-546
Combined use of RNAi and quantitative proteomics to study gene function in Drosophila
Bonaldi T, Straub T, Cox J, Kumar C, Becker PB, Mann M.
Mol Cell (2008) 31(5): 762-72
Identification of c-Src Tyrosine Kinase Substrates Using Mass Spectrometry and Peptide Microarrays
Ramars Amanchy, Jun Zhong, Henrik Molina, Raghothama Chaerkady, Akiko Iwahori, Dario Eluan Kalume, Mads Grønborg, Jos Joore, Leslie Cope, and Akhilesh Pandey
JOURNAL OF PROTEOME RESEARCH (2008) 7(9): 3900-3910
Proteomics applied on plant abiotic stresses: Role of heat shock proteins (HSP)
Anna Maria Timperio, Maria Giulia Egidi and Lello Zolla
Journal of Proteomics (2008) 71(4): 391-411
Transgenic, Fluorescent Leishmania mexicana Allow Direct Analysis of the Proteome of Intracellular Amastigotes
Daniel Paape, Christoph Lippuner, Monika Schmid, Renate Ackermann, Martin E. Barrios-Llerena, Ursula Zimny-Arndt, Volker Brinkmann, Benjamin Arndt, Klaus Peter Pleissner, Peter R. Jungblut, and Toni Aebischer
Mol Cell Proteomics (2008) 7(9): 1688-1701
The impact of tyrosine kinase 2 (Tyk2) on the proteome of murine macrophages and their response to lipopolysaccharide (LPS)
Marta Radwan, Ingrid Miller, Tom Grunert, Martina Marchetti-Deschmann, Claus Vogl, Niaobh O'Donoghue, Michael J. Dunn, Thomas Kolbe, Gnter Allmaier, Manfred Gemeiner, Mathias Mller, Birgit Strobl
PROTEOMICS (2008) 8(17): 3469-3485
Proteomic analysis of soybean nodule cytosol
Oehrle NW, Sarma AD, Waters JK, Emerich DW.
Phytochemistry Early Edition: published 29-Aug-2008
Phosphorylation and Kinetics of Mammalian Cytochrome c Oxidase
Stefan Helling, Sebastian Vogt, Annika Rhiel, Rabia Ramzan, Li Wen, Katrin Marcus, and Bernhard Kadenbach
Mol Cell Proteomics (2008) 7(9): 1714-1724
Identification of new protein substrates for the chloroplast ATP-dependent Clp protease supports its constitutive role in Arabidopsis
Stanne TM, Sjögren LL, Koussevitzky S, Clarke AK.
Biochem J Early Edition: published 29-Aug-2008
Comparative Studies of Early Liver Dysfunction in Senescence-accelerated Mouse Using Mitochondrial Proteomics Approaches
Yashu Liu, Jintang He, Shaoyi Ji, Qingsong Wang, Hai Pu, Tingting Jiang, Lingyao Meng, Xiuwei Yang, and Jianguo Ji
Mol Cell Proteomics (2008) 7(9): 1737-1747
Protein tyrosine kinases and protein tyrosine phosphatases are involved in ABA-dependent processes in Arabidopsis thaliana seeds and suspension cells
Ghelis T, Bolbach G, Clodic G, Habricot Y, Miginiac E, Sotta B, Jeannette E.
Plant Physiol Early Edition: published 3-Sep-2008
Mechanism of 3,4-methylenedioxymethamphetamine (MDMA, ecstasy)-mediated mitochondrial dysfunction in rat liver
Kwan-Hoon Moon, Vijay V. Upreti, Li-Rong Yu, Insong J. Lee, Xiaoying Ye, Natalie D. Eddington, Timothy D. Veenstra, Byoung-Joon Song
PROTEOMICS (2008) 8(18): 3906-3918
Use of Fluorescence-activated Vesicle Sorting for Isolation of Naked2-associated, Basolaterally Targeted Exocytic Vesicles for Proteomics Analysis
Zheng Cao, Cunxi Li, James N. Higginbotham, Jeffrey L. Franklin, David L. Tabb, Ramona Graves-Deal, Salisha Hill, Kristin Cheek, W. Gray Jerome, Lynne A. Lapierre, James R. Goldenring, Amy-Joan L. Ham, and Robert J. Coffey
Mol Cell Proteomics (2008) 7(9): 1651-1667
Protein isoaspartate methyltransferase prevents apoptosis induced by oxidative stress in endothelial cells: role of Bcl-Xl deamidation and methylation
Cimmino A, Capasso R, Muller F, Sambri I, Masella L, Raimo M, De Bonis ML, D'Angelo S, Zappia V, Galletti P, Ingrosso D.
PLoS ONE (2008) 3(9): e3258
Proteomic analysis of pluripotent stem cells
Bendall SC, Booy AT, Lajoie G.
Curr Protoc Stem Cell Biol (2007) Chapter 1: Unit1B.1.
N-acetylglucosaminyltransferase III expression is regulated by cell-cell adhesion via the E-cadherin-catenin-actin complex
Ryota Akama, Yuya Sato, Yoshinobu Kariya, Tomoya Isaji, Tomohiko Fukuda, Lianghao Lu, Naoyuki Taniguchi, Masayuki Ozawa, Jianguo Gu
PROTEOMICS (2008) 8(16): 3221-3228
Comparative Proteomics of Tuber Induction, Development and Maturation Reveal the Complexity of Tuberization Process in Potato (Solanum tuberosum L.)
Lalit Agrawal, Subhra Chakraborty, Dinesh Kumar Jaiswal, Sonika Gupta, Asis Datta, and Niranjan Chakraborty
JOURNAL OF PROTEOME RESEARCH (2008) 7(9): 3803-3817
The proteome of rodent mesenteric lymph
Mittal A, Middleditch M, Ruggiero K, Buchanan CM, Jullig M, Loveday B, Cooper GJ, Windsor JA, Phillips AR.
Am J Physiol Gastrointest Liver Physiol Early Edition: published 4-Sep-2008
Translation initiation proteins, ubiquitin-proteasome system related proteins, and 14-3-3 proteins as response proteins in FL cells exposed to anti-benzo[a]pyrene-7,8-dihydrodiol-9,10-epoxide
Wenyan Shen, Hui liu, Yingnian Yu
PROTEOMICS (2008) 8(17): 3450-3468
Analysis of embryonic proteome modulation by GA and ABA from germinating rice seeds
Sun Tae Kim, Sun Young Kang, Yiming Wang, Sang Gon Kim, Du Hyeon Hwang, Kyu Young Kang
PROTEOMICS (2008) 8(17): 3577-3587
The Proteomic Constraint and its role in molecular evolution
Massey SE.
Mol Biol Evol Early Edition: published 22-Sep-2008
Glyphosate-induced oxidative stress in rice leaves revealed by proteomic approach
Ahsan N, Lee DG, Lee KW, Alam I, Lee SH, Bahk JD, Lee BH.
Plant Physiol Biochem Early Edition: published 19-Jul-2008
Growth pattern and partial proteome of Mycobacterium avium subsp. paratuberculosis during the stress response to hypoxia and nutrient starvation
Gumber S, Taylor DL, Marsh IB, Whittington RJ.
Vet Microbiol Early Edition: published 5-Aug-2008
Proteome analysis at the subcellular level of the cyanobacterium Spirulina platensis in response to low-temperature stress conditions
Hongsthong A, Sirijuntarut M, Prommeenate P, Lertladaluck K, Porkaew K, Cheevadhanarak S, Tanticharoen M.
FEMS Microbiol Lett Early Edition: published 1-Sep-2008
A joint transcriptomic, proteomic and metabolic analysis of maize endosperm development and starch filling
Prioul JL, Méchin V, Lessard P, Thévenot C, Grimmer M, Chateau-Joubert S, Coates S, Hartings H, Kloiber-Maitz M, Murigneux A, Sarda X, Damerval C, Edwards KJ.
Plant Biotechnol J Early Edition: published 16-Sep-2008
Analysis of nonadditive protein accumulation in young primary roots of a maize (Zea mays L.) F1-hybrid compared to its parental inbred lines
Nadine Hoecker, Tobias Lamkemeyer, Barbara Sarholz, Anja Paschold, Claudia Fladerer, Johannes Madlung, Karl Wurster, Mark Stahl, Hans-Peter Piepho, Alfred Nordheim, Frank Hochholdinger
PROTEOMICS (2008) 8(18): 3882-3894
Identification of secreted glycoproteins of human prostate and bladder stromal cells by comparative quantitative proteomics
Goo YA, Liu AY, Ryu S, Shaffer SA, Malmström L, Page L, Nguyen LT, Doneanu CE, Goodlett DR.
Prostate Early Edition: published 15-Sep-2008
Comparative proteomic study of arsenic-induced differentially expressed proteins in rice roots reveals glutathione plays a central role during As stress
Nagib Ahsan, Dong-Gi Lee, Iftekhar Alam, Pil Joo Kim, Jeung Joo Lee, Young-Ock Ahn, Sang-Soo Kwak, In-Jung Lee, Jeong Dong Bahk, Kyu Young Kang, Jenny Renaut, Setsuko Komatsu, Byung-Hyun Lee
PROTEOMICS (2008) 8(17): 3561-3576
Lipolytic and esterolytic activity-based profiling of murine liver
Ruth Birner-Gruenberger, Heidrun Susani-Etzerodt, Manfred Kollroser, Gerald N. Rechberger, Albin Hermetter
PROTEOMICS (2008) 8(17): 3645-3656
Mating induces an immune response and developmental switch in the Drosophila oviduct
Kapelnikov A, Zelinger E, Gottlieb Y, Rhrissorrakrai K, Gunsalus KC, Heifetz Y.
Proc Natl Acad Sci U S A (2008) 105(37): 13912-7
Dynamic Proteomic Analysis Reveals a Switch Between Central Carbon Metabolism and Alcoholic Fermentation in Oryza sativa Filling Grains
Xu SB, Li T, Deng ZY, Chong K, Xue Y, Wang T.
Plant Physiol Early Edition: published 27-Aug-2008
Changes in the protein profile of Quercus ilex leaves in response to drought stress and recovery
Echevarría-Zomeño S, Ariza D, Jorge I, Lenz C, Del Campo A, Jorrín JV, Navarro RM.
J Plant Physiol Early Edition: published 6-Sep-2008
Immediate Protein Targets of Photodynamic Treatment in Carcinoma Cells
Pavel A. Tsaytler, Martina C. O’Flaherty, Dmitri V. Sakharov, Jeroen Krijgsveld, and Maarten R. Egmond
JOURNAL OF PROTEOME RESEARCH (2008) 7(9): 3868-3878
Proteomics joins the search for microRNA targets
Grosshans H, Filipowicz W.
Cell (2008) 134(4): 560-2
2-D DIGE and MS/MS analysis of protein serum expression in rats housed in concrete and clay cages in winter
Jong-Choon Kim, Jin Young Kim, Seok Ran Yeom, Bo Yoon Jeong, Hey-Zoo Hwang, Keum-Joo Park, Seung-won Lee
PROTEOMICS (2008) 8(17): 3632-3644
Proteomic analysis of the oxidation of cysteine residues in human age-related nuclear cataract lenses
Hains PG, Gerega S, Truscott RJ.
Biochim Biophys Acta Early Edition: published 8-Aug-2008
Identification of Campylobacter jejuni proteins recognized by chicken maternal antibodies
Shoaf-Sweeney KD, Larson CL, Tang X, Konkel ME.
Appl Environ Microbiol Early Edition: published 19-Sep-2008
Proteomics of Multigenic Families from Species Underrepresented in Databases: The Case of Loquat (Eriobotrya japonica Lindl.) Polyphenol Oxidases
Susana Sellés-Marchart, Ignacio Luque, Juan Casado-Vela, Maria José Martínez-Esteso, and Roque Bru-Martínez
JOURNAL OF PROTEOME RESEARCH (2008) 7(9): 4095-4106
Secreted Proteoglycans Directly Mediate Human Embryonic Stem Cell-FGF2 Interactions Critical for Proliferation
Levenstein ME, Berggren WT, Lee JE, Conard KR, Llanas RA, Wagner RJ, Smith LM, Thomson JA.
Stem Cells Early Edition: published 18-Sep-2008
beta-Lactams as Selective Chemical Probes for the in Vivo Labeling of Bacterial Enzymes Involved in Cell Wall Biosynthesis, Antibiotic Resistance, and Virulence
Staub I, Sieber SA.
J Am Chem Soc (2008) 130(40): 13400-9
Phosphorylation of SUMO-1 Occurs in Vivo and Is Conserved through Evolution
Ivan Matic, Boris Macek, Maximiliane Hilger, Tobias C. Walther, and Matthias Mann
JOURNAL OF PROTEOME RESEARCH (2008) 7(9): 4050-4057
A proteomics approach to identify proteins differentially expressed in Douglas-fir seedlings infected by Phellinus sulphurascens
M. Aminul Islam, Rona N. Sturrock and Abul K.M. Ekramoddoullah
Journal of Proteomics (2008) 71(4): 425-438
Proteomic profiling in an animal model of acute pancreatitis
Vanessa Ftaud, Jean-Louis Frossard, Annarita Farina, Catherine M. Pastor, Lo Bhler, Jean-Marc Dumonceau, Antoine Hadengue, Denis F. Hochstrasser, Pierre Lescuyer
PROTEOMICS (2008) 8(17): 3621-3631
Membrane proteins and membrane proteomics
Sandra Tan, Hwee Tong Tan, Maxey C. M. Chung
PROTEOMICS (2008) 8(19): 3924-3932
Structural heterogeneity and protein composition of exosome-like vesicles (prostasomes) in human semen
Poliakov A, Spilman M, Dokland T, Amling CL, Mobley JA.
Prostate Early Edition: published 25-Sep-2008
Proteomic analysis of the peritrophic matrix from the gut of the caterpillar, Helicoverpa armigera
Campbell PM, Cao AT, Hines ER, East PD, Gordon KH.
Insect Biochem Mol Biol (2008) 38(10): 950-8
Proteomic profiling of exosomes: Current perspectives
Richard J. Simpson, Sren S. Jensen, Justin W. E. Lim
PROTEOMICS (2008) 8(19): 4083-4099
Protein:protein aggregation induced by protein oxidation
Mirzaei H, Regnier F.
J Chromatogr B (2008) 873(1): 8-14
Proteomic approach to the identification of novel delta-lactoferrin target genes: Characterization of DcpS, an mRNA scavenger decapping enzyme
Mariller C, Hardivillé S, Hoedt E, Benaïssa M, Mazurier J, Pierce A.
Biochimie Early Edition: published 7-Aug-2008
Quantitative analysis of the intramacrophagic Brucella suis proteome reveals metabolic adaptation to late stage of cellular infection
Sascha Al Dahouk, Vronique Jubier-Maurin, Holger C. Scholz, Herbert Tomaso, Wolfram Karges, Heinrich Neubauer, Stephan Khler
PROTEOMICS (2008) 8(18): 3862-3870
Food vacuole proteome of the malarial parasite Plasmodium falciparum
Mauld Lamarque, Christophe Tastet, Jol Poncet, Edith Demettre, Patrick Jouin, Henri Vial, Jean-Franois Dubremetz
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(9): 1361-1374
A DIGE approach for the assessment of rat soleus muscle changes during unloading: effect of acetyl-L-carnitine supplementation
Manuela Moriggi, Pierluigi Cassano, Michele Vasso, Daniele Capitanio, Chiara Fania, Clara Musicco, Vito Pesce, Maria Nicola Gadaleta, Cecilia Gelfi
PROTEOMICS (2008) 8(17): 3588-3604
Structural proteomics of the cell envelope of Gram-negative bacteria
Tieleman DP, Turner RJ, Vogel HJ, Weiner JH.
Biochim Biophys Acta (2008) 1778(9): 1697
Integration of Metabolomic and Proteomic Phenotypes: Analysis of Data Covariance Dissects Starch and RFO Metabolism from Low and High Temperature Compensation Response in Arabidopsis Thaliana
Stefanie Wienkoop, Katja Morgenthal, Florian Wolschin, Matthias Scholz, Joachim Selbig, and Wolfram Weckwerth
Mol Cell Proteomics (2008) 7(9): 1725-1736
Vav1 Modulates Protein Expression During ATRA-Induced Maturation of APL-Derived Promyelocytes: A Proteomic-Based Analysis
Valeria Bertagnolo, Silvia Grassilli, Alberto Bavelloni, Federica Brugnoli, Manuela Piazzi, Giovanni Candiano, Andrea Petretto, Mascia Benedusi, and Silvano Capitani
JOURNAL OF PROTEOME RESEARCH (2008) 7(9): 3729-3736
Membrane and membrane-associated proteins involved in the aggressive phenotype displayed by highly invasive cancer cells
Paul Dowling, Naomi Walsh, Martin Clynes
PROTEOMICS (2008) 8(19): 4054-4065
An altered pattern of circulating apolipoprotein E3 isoforms is implicated in preeclampsia
Atkinson KR, Blumenstein M, Black MA, Wu SH, Kasabov N, Taylor RS, Cooper GJ, North RA.
J Lipid Res Early Edition: published 25-Aug-2008
Comparative Proteomic Analysis of Matched Primary and Metastatic Melanoma Cell Lines
Mohammad Al-Ghoul, Thomas B. Brück, Janelle L. Lauer-Fields, Victor S. Asirvatham, Claudia Zapata, Russell G. Kerr, and Gregg B. Fields
JOURNAL OF PROTEOME RESEARCH (2008) 7(9): 4107-4118
Proteomics study of medullary thyroid carcinomas expressing RET germ-line mutations: Identification of new signaling elements
Gorla L, Mondellini P, Cuccuru G, Miccichè F, Cassinelli G, Cremona M, Pierotti MA, Lanzi C, Bongarzone I.
Mol Carcinog Early Edition: published 28-Aug-2008
Comparative proteomic analysis between benign and malignant-transformed hydatidiform mole
Ma L, Xiang Y, Zhao J, Feng F, Wan X.
J Reprod Med (2008) 53(8): 623-8
Three-dimensional neuroblastoma cell culture: proteomic analysis between monolayer and multicellular tumor spheroids
Kumar HR, Zhong X, Hoelz DJ, Rescorla FJ, Hickey RJ, Malkas LH, Sandoval JA.
Pediatr Surg Int Early Edition: published 17-Sep-2008
Proteomic identification of proteins in the human brain: Towards a more comprehensive understanding of neurodegenerative disease
W. Michael Caudle, Sheng Pan, Min Shi, Thomas Quinn, Jake Hoekstra, Richard P. Beyer, Thomas J. Montine, Jing Zhang
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(10-11): 1484-1497
Human sialidase as a cancer marker
Taeko Miyagi, Tadashi Wada, Kazunori Yamaguchi, Kazuhiro Shiozaki, Ikuro Sato, Yoichiro Kakugawa, Hideaki Yamanami, Tsuneaki Fujiya
PROTEOMICS (2008) 8(16): 3303-3311
How the measurements of a few serum markers can be combined to enhance their clinical values in the management of cancer
Cordero OJ, De Chiara L, Lemos-González Y, Páez de la Cadena M, Rodríguez-Berrocal FJ.
Anticancer Res (2008) 28(4C): 2333-41
Potential Involvement of MYC- and p53-Related Pathways in Tumorigenesis in Human Oral Squamous Cell Carcinoma Revealed by Proteomic Analysis
Jadranka Koehn, Kurt Krapfenbauer, Susanna Huber, Elisabeth Stein, Walter Sutter, Franz Watzinger, Boban M. Erovic, Dietmar Thurnher, Thomas Schindler, Michael Fountoulakis, and Dritan Turhani
JOURNAL OF PROTEOME RESEARCH (2008) 7(9): 3818-3829
Validation of proteomic-based discovery with tissue microarrays
Stephen M. Hewitt, Mikiko Takikita, Behnoush Abedi-Ardekani, Ylaya Kris, Kathryn Bexfield, Till Braunschweig, Joon-Yong Chung
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(10-11): 1460-1466
Proteomic investigation of urinary markers of carbon-tetrachloride-induced hepatic fibrosis in the Hanover Wistar rat
Smyth R, Lane CS, Ashiq R, Turton JA, Clarke CJ, Dare TO, York MJ, Griffiths W, Munday MR.
Cell Biol Toxicol Early Edition: published 7-Sep-2008
Structural modifications of serum transthyretin in rats during protein-energy malnutrition
Andrea Henze, Sascha Rohn, Beate Gericke, Jens Raila, Florian J. Schweigert
Rapid Communications in Mass Spectrometry (2008) 22(20): 3270-3274
Proteomic approaches to antibiotic drug discovery
Bandow JE.
Curr Protoc Microbiol (2005) Chapter 1: Unit1F.2.
Proteomics-based identification of autoantibody against CDC25B as a novel serum marker in esophageal squamous cell carcinoma
Liu WL, Zhang G, Wang JY, Cao JY, Guo XZ, Xu LH, Li MZ, Song LB, Huang WL, Zeng MS.
Biochem Biophys Res Commun (2008) 375(3): 440-5
An FTS/Hook/p107FHIP Complex Interacts with and Promotes Endosomal Clustering by the Homotypic Vacuolar Protein Sorting (HOPS) Complex
Xu L, Sowa ME, Chen J, Li X, Gygi SP, Wade Harper J.
Mol Biol Cell Early Edition: published 17-Sep-2008
Comparative Proteomics Approach to Screening of Potential Diagnostic and Therapeutic Targets for Oral Squamous Cell Carcinoma
Zhi Wang, Lu Jiang, Canhua Huang, Zhengyu Li, Lijuan Chen, Lantu Gou, Ping Chen, Aiping Tong, Minghai Tang, Feng Gao, Jun Shen, Yuanyuan Zhang, Jingping Bai, Min Zhou, Di Miao, and Qianming Chen
Mol Cell Proteomics (2008) 7(9): 1639-1650
A proteomic study of peripheral blood mononuclear cells in systemic lupus erythematosus
Dai Y, Hu C, Huang Y, Huang H, Liu J, Lv T.
Lupus (2008) 17(9): 799-804
Long-term proteasome dysfunction in the mouse brain by expression of aberrant ubiquitin
Fischer DF, van Dijk R, van Tijn P, Hobo B, Verhage MC, van der Schors RC, Wan Li K, van Minnen J, Hol EM, van Leeuwen FW.
Neurobiol Aging Early Edition: published 27-Aug-2008
Comparative proteomic analysis reveals differentially expressed proteins regulated by a potential tumor promoter, BRE, in human esophageal carcinoma cells
Chen HB, Pan K, Tang MK, Chui YL, Chen L, Su ZJ, Shen ZY, Li EM, Xie W, Lee KK.
Biochem Cell Biol (2008) 86(4): 302-11
High-performance liquid chromatography/nano-electrospray ionization tandem mass spectrometry, two-dimensional difference in-gel electrophoresis and gene microarray identification of lymphatic metastasis-associated biomarkers
Shuqing Liu, Ming-Zhong Sun, Jian-Wu Tang, Zhiqiang Wang, Chengrong Sun, Frederick T. Greenaway
Rapid Communications in Mass Spectrometry (2008) 22(20): 3172-3178
Quantitative proteome analysis reveals annexin A3 as a novel biomarker in lung adenocarcinoma
Liu Y, Xiao Z, Li M, Li M, Zhang P, Li C, Li F, Chen Y, Yi H, Yao H, Chen ZC.
J Pathol Early Edition: published 14-Aug-2008
Proteomic profiles of bronchoalveolar lavage fluid from patients with ventilator-associated pneumonia by gel-assisted digestion and 2-D-LC/MS/MS
Yen-Ta Lu, Chia-Li Han, Chien-Liang Wu, Tien-Min Yu, Chih-Wei Chien, Ching-Lung Liu, Yu-Ju Chen
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(9): 1208-1222
Sera proteomic biomarker profiling in HIV-1 infected subjects with cognitive impairment
Wojciech Rozek, Jayme Horning, James Anderson, Pawel Ciborowski
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(10-11): 1498-1507
Bioengineering a humanized acne microenvironment model: Proteomics analysis of host responses to Propionibacterium acnes infection in vivo
Teruaki Nakatsuji, Yang Shi, Wenhong Zhu, Cheng-Po Huang, Yun-Ru Chen, Dong-Youn Lee, Jeffery W. Smith, Christos C. Zouboulis, Richard L. Gallo, Chun-Ming Huang
PROTEOMICS (2008) 8(16): 3406-3415
Identification of new accessible tumor antigens in human colon cancer by ex vivo protein biotinylation and comparative mass spectrometry analysis
Conrotto P, Roesli C, Rybak J, Kischel P, Waltregny D, Neri D, Castronovo V.
Int J Cancer Early Edition: published 16-Sep-2008
Urinary protein profiling with surface-enhanced laser desorption/ionization time-of-flight mass spectrometry in ETB receptor-deficient rats
Raila J, Kalk P, Pfab T, Thöne-Reineke C, Godes M, Yanagisawa M, Schweigert FJ, Hocher B.
Can J Physiol Pharmacol (2008) 86(8): 566-70
Cell surface biomarkers of embryonic stem cells
Kohji Nagano, Yoko Yoshida, Toshiaki Isobe
PROTEOMICS (2008) 8(19): 4025-4035
Neuroproteomics and systems biology-based discovery of protein biomarkers for traumatic brain injury and clinical validation
Firas H. Kobeissy, Shankar Sadasivan, Monika W. Oli, Gillian Robinson, Stephen F. Larner, Zhiqun Zhang, Ronald L. Hayes, Kevin K. W. Wang
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(10-11): 1467-1483
Proteome Profiling of U2OS Cell Line in Response to a Prenylphenol Antibiotic Isolated from a Phytopathogenic Fungus
Chang YC, Park WH, Min KS, Kim T, Kim CH, Kang JH.
Biol Pharm Bull (2008) 31(9): 1696-703
Quantitative Proteomic Signature of Liver Cancer Cells: Tissue Transglutaminase 2 Could Be a Novel Protein Candidate of Human Hepatocellular Carcinoma
Yulin Sun, Wei Mi, Jianqiang Cai, Wantao Ying, Fang Liu, Haizhen Lu, Yuanyuan Qiao, Wei Jia, Xinyu Bi, Ning Lu, Shangmei Liu, Xiaohong Qian, and Xiaohang Zhao
JOURNAL OF PROTEOME RESEARCH (2008) 7(9): 3847-3859
Using differential solubilization and 2-D gel electrophoresis to visualize increased numbers of proteins in the human cortex and caudate nucleus and putamen
Brian Dean, Geoffrey Pavey, A. Ian Smith
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(9): 1281-1289
Proteomic analysis in monocytes of antiphospholipid syndrome patients: Deregulation of proteins related to the development of thrombosis
López-Pedrera C, Cuadrado MJ, Herández V, Buendïa P, Aguirre MA, Barbarroja N, Torres LA, Villalba JM, Velasco F, Khamashta M.
Arthritis Rheum (2008) 58(9): 2835-2844
Cancer informatics by prototype networks in mass spectrometry
Schleif FM, Villmann T, Kostrzewa M, Hammer B, Gammerman A.
Artif Intell Med Early Edition: published 6-Sep-2008
Improvements for the visualization of low-molecular weight protein and peptides of human tears using MALDI
Terry Nguyen-Khuong, Anna Fitzgerald, Zhejun Zhao, Mark Willcox, Bradley J. Walsh
PROTEOMICS (2008) 8(17): 3424-3432
Predicting response to neoadjuvant chemotherapy in breast cancer: Molecular imaging, systemic biomarkers and the cancer metabolome (Review)
Chuthapisith S, Eremin JM, Eremin O.
Oncol Rep (2008) 20(4): 699-703
Proteomic identification of nitrated brain proteins in traumatic brain-injured rats treated postinjury with gamma-glutamylcysteine ethyl ester: Insights into the role of elevation of glutathione as a potential therapeutic strategy for traumatic brain injury
Reed TT, Owen J, Pierce WM, Sebastian A, Sullivan PG, Butterfield DA.
J Neurosci Res Early Edition: published 19-Sep-2008
Increased Plasma Concentrations of Cytoskeletal and Ca2+-Binding Proteins and Their Peptides in Psoriasis Patients
Plavina T, Hincapie M, Wakshull E, Subramanyam M, Hancock WS.
Clin Chem Early Edition: published 18-Sep-2008
Proteomic analysis of anti-tumor effects by Rhizoma Paridis total saponin treatment in HepG2 cells
Cheng ZX, Liu BR, Qian XP, Ding YT, Hu WJ, Sun J, Yu LX.
J Ethnopharmacol Early Edition: published 6-Aug-2008
Prognostic evaluation of epidermal fatty acid-binding protein and calcyphosine, two proteins implicated in endometrial cancer using a proteomic approach
Li Z, Huang C, Bai S, Pan X, Zhou R, Wei Y, Zhao X.
Int J Cancer (2008) 123(10): 2377-83
Population Studies of Vitamin D Binding Protein Microheterogeneity by Mass Spectrometry Lead to Characterization of its Genotype-Dependent O-Glycosylation Patterns
Chad R. Borges, Jason W. Jarvis, Paul E. Oran, and Randall W. Nelson
JOURNAL OF PROTEOME RESEARCH (2008) 7(9): 4143-4153
Proteomic Analysis in Lung Tissue of Smokers and Chronic Obstructive Pulmonary Disease Patients
Joo Lee E, Ho In K, Hyeong Kim J, Yeub Lee S, Shin C, Jeong Shim J, Ho Kang K, Hwa Yoo S, Hwan Kim C, Kim HK, Lee SH, Sub Uhm C.
Chest Early Edition: published 27-Aug-2008
Aberrant expression of glycosylation in juvenile gastrointestinal stromal tumors
Tsuyoshi Takahashi, Tetsuji Naka, Minoru Fujimoto, Satoshi Serada, Jirou Horino, Fumitaka Terabe, Seiichi Hirota, Eiji Miyoshi., Toshihiro Hirai, Kiyokazu Nakajima, Akiko Nishitani, Yoshihito Souma, Yoshiki Sawa, Toshirou Nishida
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(9): 1246-1254
Proteome profiling of vitreoretinal diseases by cluster analysis
Tomomi Shitama, Hideyuki Hayashi, Sumiyo Noge, Eiichi Uchio, Kenji Oshima, Hisao Haniu, Nobuaki Takemori, Naoka Komori, Hiroyuki Matsumoto
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(9): 1265-1280
Proteomics of Human Neurodegenerative Diseases
Zhang J, Keene CD, Pan C, Montine KS, Montine TJ.
J Neuropathol Exp Neurol (2008) 67(10): 923-32
High-resolution biomarker discovery: Moving from large-scale proteome profiling to quantitative validation of lead candidates
Johannes A. Hewel, Andrew Emili
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(10-11): 1422-1434
Serial analyses of postmortem changes in human skeletal muscle: A case study of alterations in proteome profile, histology, electrolyte contents, water composition, and enzyme activity
Ratree Tavichakorntrakool, Vitoon Prasongwattana, Pote Sriboonlue, Anucha Puapairoj, Jongruk Pongskul, Narong Khuntikeo, Wattana Hanpanich, Pa-thai Yenchitsomanus, Chaisiri Wongkham, Visith Thongboonkerd
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(9): 1255-1264
A Preliminary Study of Metalloproteins in CSF by CapLC-ICPMS and NanoLC-CHIP/ITMS
Jenny Ellis, Estela Del Castillo, Maria Montes Bayon, Rudolf Grimm, Joseph F. Clark, Gail Pyne-Geithman, Steve Wilbur, and Joseph A. Caruso
JOURNAL OF PROTEOME RESEARCH (2008) 7(9): 3747-3754
Proteomics-Based Identification of HSP60 as a Tumor-Associated Antigen in Early Stage Breast Cancer and Ductal Carcinoma in situ
C. Desmetz, F. Bibeau, F. Boissière, V. Bellet, P. Rouanet, T. Maudelonde, A. Mangé, and J. Solassol
JOURNAL OF PROTEOME RESEARCH (2008) 7(9): 3830-3837
The proteogenomic path towards biomarker discovery
Sigdel TK, Sarwal MM.
Pediatr Transplant Early Edition: published 22-Aug-2008
CagA of Helicobacter pylori alters the expression and cellular distribution of host proteins involved in cell signaling
Zeaiter Z, Huynh HQ, Kanyo R, Stein M.
FEMS Microbiol Lett Early Edition: published 20-Sep-2008
Lectin precipitation using phytohemagglutinin-L4 coupled to avidin-agarose for serological biomarker discovery in colorectal cancer
Yong-Sam Kim, Ok Lye Son, Ju Yeon Lee, Sun Hee Kim, Sejeong Oh, Yoon Suk Lee, Cheorl-Ho Kim, Jong Shin Yoo, Jeong-Hwa Lee, Eiji Miyoshi, Naoyuki Taniguchi, Samir M. Hanash, Hyang Sook Yoo, Jeong Heon Ko
PROTEOMICS (2008) 8(16): 3229-3235
Proteomic Analysis of Testis Biopsies in Men Treated with Injectable Testosterone Undecanoate Alone or in Combination with Oral Levonorgestrel as Potential Male Contraceptive
Yugui Cui, Hui Zhu, Yefei Zhu, Xuejiang Guo, Ran Huo, Xinghai Wang, Jiansun Tong, Lixin Qian, Zuomin Zhou, Yue Jia, Yan-he Lue, Amiya Sinha Hikim, Christina Wang, Ronald S. Swerdloff, and Jiahao Sha
JOURNAL OF PROTEOME RESEARCH (2008) 7(9): 3984-3993
The application of proteomics technology to thrombosis research: the identification of potential therapeutic targets in cardiovascular disease
Howes JM, Keen JN, Findlay JB, Carter AM.
Diab Vasc Dis Res (2008) 5(3): 205-12
Post-transplant proteinuria associated with everolimus: Definition of main features with proteomics
Gian Marco Ghiggeri, Maurizio Bruschi, Luca Musante, Giovanni Candiano, Claudia Boccardi, Lorenzo Citti, Maria Pia Rastaldi, Salvatore Mangraviti, Giuseppina Rosso, Aida Larti, Alberto Rosati, Andrea Urbani, Rosanna Gusmano, Elisabetta Bertoni, Maurizio Salvadori
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(9): 1327-1337
Using Proteomic Approach to Identify Tumor-Associated Antigens as Markers in Hepatocellular Carcinoma
Kok Sun Looi, Ernesto S. Nakayasu, Raquel A. de Diaz, Eng M. Tan, Igor C. Almeida, and Jian-Ying Zhang
JOURNAL OF PROTEOME RESEARCH (2008) 7(9): 4004-4012
Imaging mass spectrometry: Towards clinical diagnostics
Erin H. Seeley, Richard M. Caprioli
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(10-11): 1435-1443
Fine-Needle Aspiration of Thyroid Nodules: Proteomic Analysis To Identify Cancer Biomarkers
Laura Giusti, Pietro Iacconi, Federica Ciregia, Gino Giannaccini, Gian Luca Donatini, Fulvio Basolo, Paolo Miccoli, Aldo Pinchera, and Antonio Lucacchini
JOURNAL OF PROTEOME RESEARCH (2008) 7(9): 4079-4088
Sample handling for mass spectrometric proteomic investigations of human urine
Anette Lykke Petri, Claus Hgdall, Ib Jarle Christensen, Anja Hviid Simonsen, Davy T'Jampens, Marja-Leena Hellmann, Susanne Krger Kjaer, Eric T. Fung, Estrid Hgdall
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(9): 1184-1193
Towards identifying Brassica proteins involved in mediating resistance to Leptosphaeria maculans: A proteomics-based approach
Nidhi Sharma, Naomi Hotte, Muhammad H. Rahman, Mohsen Mohammadi, Michael K. Deyholos, Nat N. V. Kav
PROTEOMICS (2008) 8(17): 3516-3535
Proteomic identification of nitrated brain proteins in early Alzheimer's disease inferior parietal lobule
Reed TT, Pierce WM Jr, Turner DM, Markesbery WR, Butterfield DA.
J Cell Mol Med Early Edition: published 21-Aug-2008
Combined Statin and Niacin Therapy Remodels the High-Density Lipoprotein Proteome
Green PS, Vaisar T, Pennathur S, Kulstad JJ, Moore AB, Marcovina S, Brunzell J, Knopp RH, Zhao XQ, Heinecke JW.
Circulation (2008) 118(12): 1259-67
A proteomic analysis of Leptospira being shed in urine of chronically infected hosts
Monahan AM, Callanan JJ, Nally JE.
Infect Immun Early Edition: published 2-Sep-2008
Involvement of Acidic Fibroblast Growth Factor in Spinal Cord Injury Repair Processes Revealed by a Proteomics Approach
Ming-Chu Tsai, Li-Fen Shen, Huai-Sheng Kuo, Henrich Cheng, and Kin-Fu Chak
Mol Cell Proteomics (2008) 7(9): 1668-1687
CSF amyloid-? 1-38 and 1-42 in FTD and AD: Biomarker performance critically depends on the detergent accessible fraction
Mirko Bibl, Piotr Lewczuk, Hermann Esselmann, Brit Mollenhauer, Hans-Wolfgang Klafki, Volker Welge, Stefanie Wolf, Claudia Trenkwalder, Markus Otto, Johannes Kornhuber, Jens Wiltfang
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(10-11): 1548-1556
Analyses of differential proteome of human synovial fibroblasts obtained from arthritis
Bo GP, Zhou LN, He WF, Luo GX, Jia XF, Gan CJ, Chen GX, Fang YF, Larsen PM, Wu J.
Clin Rheumatol Early Edition: published 20-Sep-2008
Glycoproteomics and glycomics investigation of membrane N-glycosylproteins from human colon carcinoma cells
Anne-Sophie Vercoutter-Edouart, Marie-Christine Slomianny, Olivia Dekeyzer-Beseme, Jean-Franois Haeuw, Jean-Claude Michalski
PROTEOMICS (2008) 8(16): 3236-3256
Calgranulin B (S100A9) Levels in Bronchoalveolar Lavage Fluid of Patients with Interstitial Lung Diseases
Bargagli E, Olivieri C, Prasse A, Bianchi N, Magi B, Cianti R, Bini L, Rottoli P.
Inflammation (2008) 31(5): 351-4
Liquid chromatography/tandem mass spectrometric method for the quantification of eight proteolytic fragments of ITIH4 with biomarker potential in human plasma and serum
Irene van den Broek, Rolf W. Sparidans, Jan H. M. Schellens, Jos H. Beijnen
Rapid Communications in Mass Spectrometry (2008) 22(18): 2915-2928
IPO-38 Is Identified as a Novel Serum Biomarker of Gastric Cancer Based on Clinical Proteomics Technology
Yuan Hao, Yingyan Yu, Lishun Wang, Min Yan, Jun Ji, Ying Qu, Jun Zhang, Bingya Liu, and Zhenggang Zhu
JOURNAL OF PROTEOME RESEARCH (2008) 7(9): 3668-3677
Identification of immunogenic cell wall-associated proteins of Streptococcus suis serotype 2
Anding Zhang, Chunyan Xie, Huanchun Chen, Meilin Jin
PROTEOMICS (2008) 8(17): 3506-3515
Analysis of the human immune response to vaccinia by use of a novel protein microarray suggests that antibodies recognize less than 10% of the total viral proteome
Kara Schmid, Sarah L. Keasey, Phillip Pittman, Ginny L. Emerson, James Meegan, Alexander P. Tikhonov, Gengxin Chen, Barry Schweitzer, Robert G. Ulrich
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(10-11): 1528-1538
Analysis of biofluids for biomarker research
Xia Xu, Timothy D. Veenstra
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(10-11): 1403-1412
Comparative Studies of Early Liver Dysfunction in Senescence-accelerated Mouse Using Mitochondrial Proteomics Approaches
Yashu Liu, Jintang He, Shaoyi Ji, Qingsong Wang, Hai Pu, Tingting Jiang, Lingyao Meng, Xiuwei Yang, and Jianguo Ji
Mol Cell Proteomics (2008) 7(9): 1737-1747
Increased expression of HSP27 linked to vincristine resistance in human gastric cancer cell line
Yang YX, Sun XF, Cheng AL, Zhang GY, Yi H, Sun Y, Hu HD, Hu P, Ye F, Chen ZC, Xiao ZQ.
J Cancer Res Clin Oncol Early Edition: published 29-Aug-2008
Multidimensional protein fractionation using ProteomeLab PF 2Dtrade mark for profiling amyotrophic lateral sclerosis immunity: A preliminary report
Schlautman JD, Rozek W, Stetler R, Mosley RL, Gendelman HE, Ciborowski P.
Proteome Science (2008) 6: 26.
Characterisation of tumoral markers correlated with ErbB2 (HER2/Neu) overexpression and metastasis in breast cancer
Ma Carmen Durn, Francisco Vega, Gema Moreno-Bueno, Ma Jesus Artiga, Lydia Sanchez, Jose Palacios, Anne Ridley, John F. Timms
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(9): 1313-1326
Differences in shotgun protein expression profile between superficial bladder transitional cell carcinoma and normal urothelium
Niu H, Zhang Y, Jiang H, Cheng B, Sun G, Wang Y, E Y, Pang D, Chang J.
Urol Oncol Early Edition: published 23-Sep-2008
Potential biomarkers of human salivary function: A modified proteomic approach
Rudney JD, Staikov RK, Johnson JD.
Arch Oral Biol Early Edition: published 17-Sep-2008
The value of proteomics for the diagnosis of a platelet-related bleeding disorder
Maurer-Spurej E, Kahr WH, Carter CJ, Pittendreigh C, Cameron M, Cyr TD.
Platelets (2008) 19(5): 342-51
Comparative Proteome, Transcriptome, and Genome Analysis of a Gonadal and an Extragonadal Germ Cell Tumor Cell Line
Stephanie Glaesener, Friedemann Honecker, Imke M. Veltman, Ad J. M. Gillis, Tina Rohlfing, Thomas Streichert, Benjamin Otto, Tim H. Brummendorf, Leendert H. J. Looijenga, Carsten Bokemeyer, and Stefan Balabanov
JOURNAL OF PROTEOME RESEARCH (2008) 7(9): 3890-3899
The interface between biomarker discovery and clinical validation: The tar pit of the protein biomarker pipeline
Amanda G. Paulovich, Jeffrey R. Whiteaker, Andrew N. Hoofnagle, Pei Wang
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(10-11): 1386-1402
Tracking humoral responses using self assembling protein microarrays
Niroshan Ramachandran, Karen S. Anderson, Jacob V. Raphael, Eugenie Hainsworth, Sahar Sibani, Wagner R. Montor, Marcin Pacek, Jessica Wong, Mariam Eljanne, Martin G. Sanda, Yanhui Hu, Tanya Logvinenko, Joshua LaBaer
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(10-11): 1518-1527
Combination of immunohistochemistry and laser ablation ICP mass spectrometry for imaging of cancer biomarkers
Jaume Seuma, Josephine Bunch, Alan Cox, Cameron McLeod, Jane Bell, Cliff Murray
PROTEOMICS (2008) 8(18): 3775-3784
Proteomic detection of changes in protein expression induced by cordycepin in human hepatocellular carcinoma BEL-7402 cells
Shi P, Huang Z, Tan X, Chen G.
Methods Find Exp Clin Pharmacol (2008) 30(5): 347-53
Fucosylated haptoglobin is a novel marker for pancreatic cancer: Detailed analyses of oligosaccharide structures
Eiji Miyoshi, Miyako Nakano
PROTEOMICS (2008) 8(16): 3257-3262
Proteomic Profiling of Hepatitis B Virus-related Hepatocellular Carcinoma in China: a SELDI-TOF-MS Study
Zhang J, Li D, Zheng Y, Cui Y, Feng K, Zhou J, Wu J.
Int J Clin Exp Pathol (2008) 1(4): 352-361
Quantitation of cardioexcitatory Asn-D-Trp-Phe-NH2 diastereomers in Aplysia's central nervous system by nanoscale liquid chromatography-tandem mass spectrometry
Yaru Song, Yi-Ming Liu
Journal of Mass Spectrometry (2008) 43(9): 1285-1290
Differential protein expression induced by a lipid extract of Perna canaliculus in splenocytes of rats with adjuvant-induced arthritis
Lee CH, Butt YK, Wong MS, Lo SC.
Inflammopharmacology (2008) 16(4): 188-94
Biomarker discovery in glomerular diseases using urinary proteomics
Visith Thongboonkerd
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(10-11): 1413-1421
Overexpression of heat shock protein 27 in squamous cell carcinoma of the uterine cervix: a proteomic analysis using archival formalin-fixed, paraffin-embedded tissues
Ono A, Kumai T, Koizumi H, Nishikawa H, Kobayashi S, Tadokoro M.
Hum Pathol Early Edition: published 26-Aug-2008
Prostate cancer serum biomarker discovery through proteomic analysis of alpha-2 macroglobulin protein complexes
Earle F. Burgess, Amy-Joan L. Ham, David L. Tabb, Dean Billheimer, Bruce J. Roth, Sam S. Chang, Michael S. Cookson, Timothy J. Hinton, Kristin L. Cheek, Salisha Hill, Jennifer A. Pietenpol
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(9): 1223-1233
Proteomic profiling in an animal model of acute pancreatitis
Vanessa Ftaud, Jean-Louis Frossard, Annarita Farina, Catherine M. Pastor, Lo Bhler, Jean-Marc Dumonceau, Antoine Hadengue, Denis F. Hochstrasser, Pierre Lescuyer
PROTEOMICS (2008) 8(17): 3621-3631
Analysis of Bacterial Membrane Proteins Produced During Mammalian Infection Using Hydrophobic Antigen Tissue Triton Extraction (HATTREX)
Crother TR, Nally JE.
Curr Protoc Microbiol (2008) Chapter 12: Unit12.1.
Low intensity ultrasound-induced apoptosis in human gastric carcinoma cells
Feng Y, Tian ZM, Wan MX, Zheng ZB.
World J Gastroenterol (2008) 14(31): 4873-9
Bringing diagnostic technologies to the clinical laboratory: Rigor, regulation, and reality
Gordon Whiteley
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(10-11): 1378-1385
Identification of Apolipoprotein AI as a serum biomarker of chronic kidney disease in liver transplant recipients, using proteomic techniques
Aisling O'Riordan, Olwyn Johnston, Tara McMorrow, Kieran Wynne, Patricia Maguire, John E. Hegarty, Aidan McCormick, Alan J. Watson, Gerard Cagney, William M. Gallagher, Michael P. Ryan
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(9): 1338-1348
Proteome Analysis Identifies the Role of Heat Stress in Production of Progeny HCV in Huh7 Cells Harboring Intact HCV
Zhao S, Xun M, Chu Y, Zhu T, Wang Y, Yan L, Xun X, Xu K, Song J, Shao M.
Intervirology (2008) 51(3): 196-202
One-hit effects in cancer: altered proteome of morphologically normal colon crypts in familial adenomatous polyposis
Yeung AT, Patel BB, Li XM, Seeholzer SH, Coudry RA, Cooper HS, Bellacosa A, Boman BM, Zhang T, Litwin S, Ross EA, Conrad P, Crowell JA, Kopelovich L, Knudson A.
Cancer Res (2008) 68(18): 7579-86
Comparative proteomic analysis of peripheral blood mononuclear cells from atopic dermatitis patients and healthy donors
Kim WK, Cho HJ, Ryu SI, Hwang HR, Kim DH, Ryu HY, Chung JW, Kim TY, Park BC, Bae KH, Ko Y, Lee SC.
BMB Rep (2008) 41(8): 597-603
MALDI-MS derived prognostic protein markers for resected non-small cell lung cancer
Baogang J. Xu, Adriana L. Gonzalez, Takefumi Kikuchi, Kiyoshi Yanagisawa, Pierre P. Massion, Huiyun Wu, Stephen E. Mason, Sandy J. Olson, Yu Shyr, David P. Carbone, Richard M. Caprioli
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(10-11): 1508-1517
Toll-Like Receptor-2 Mediates Diet and/or Pathogen Associated Atherosclerosis: Proteomic Findings
Madan M, Amar S.
PLoS ONE (2008) 3(9): e3204
Proteomic analysis of protein expression in human tonsillar cancer - differentially expressed proteins characterize human tonsillar cancer
Roblick UJ, Bader FG, Hammarstedt L, Habermann JK, Hellman U, Becker S, Sundmacker A, Gemoll T, Zimmermann K, Auer G, Munck-Wikland E.
Acta Oncol Early Edition: published 29-Aug-2008
Localized-statistical quantification of human serum proteome associated with type 2 diabetes
Li RX, Chen HB, Tu K, Zhao SL, Zhou H, Li SJ, Dai J, Li QR, Nie S, Li YX, Jia WP, Zeng R, Wu JR.
PLoS ONE (2008) 3(9): e3224
Clinical application of functional glycoproteomics - dissection of glycotopes carried by soluble CD44 variants in sera of patients with cancers
Khe-Ti Lim, Keiko Miyazaki, Naoko Kimura, Mineko Izawa, Reiji Kannagi
PROTEOMICS (2008) 8(16): 3263-3273
Identification of a Specific Vimentin Isoform That Induces an Antibody Response in Pancreatic Cancer
Hong SH, Misek DE, Wang H, Puravs E, Hinderer R, Giordano TJ, Greenson JK, Brenner DE, Simeone DM, Logsdon CD, Hanash SM.
Biomark Insights (2006) 1: 175-183
The Knowledge-Integrated Network Biomarkers Discovery for Major Adverse Cardiac Events
Guangxu Jin, Xiaobo Zhou, Honghui Wang, Hong Zhao, Kemi Cui, Xiang-Sun Zhang, Luonan Chen, Stanley L. Hazen, King Li, and Stephen T. C. Wong
JOURNAL OF PROTEOME RESEARCH (2008) 7(9): 4013-4021
Overexpression of Rho GDP-Dissociation Inhibitor Alpha Is Associated with Tumor Progression and Poor Prognosis of Colorectal Cancer
Liang Zhao, Hui Wang, Jianming Li, Yawei Liu, and Yanqing Ding
JOURNAL OF PROTEOME RESEARCH (2008) 7(9): 3994-4003
Alteration of DBP Levels in CSF of Patients with MS by Proteomics Analysis
Qin Z, Qin Y, Liu S.
Cell Mol Neurobiol Early Edition: published 19-Sep-2008
Vitreous proteomic analysis of proliferative vitreoretinopathy
Jing Yu, Feng Liu, Shu-Jian Cui, Yan Liu, Zheng-Yu Song, Hui Cao, Feng-E Chen, Wei-Jun Wang, Tao Sun, Fang Wang
PROTEOMICS (2008) 8(17): 3667-3678
Proteomics. Will biomarkers take off at last?
Service RF.
Science (2008) 321(5897): 1760
Evaluation of the serum N-linked glycome for the diagnosis of cancer and chronic inflammation
James N. Arnold, Radka Saldova, Umi M. Abd Hamid, Pauline M. Rudd
PROTEOMICS (2008) 8(16): 3284-3293
Identification and Characterization of Novel Immunogenic Proteins of Streptococcus suis Serotype 2
Hongran Geng, Li Zhu, Yuan Yuan, Wei Zhang, Wenjun Li, Jie Wang, Yuling Zheng, Kaihua Wei, Wuchun Cao, Hengliang Wang, and Yongqiang Jiang
JOURNAL OF PROTEOME RESEARCH (2008) 7(9): 4132-4142
Proteomic analysis of peritoneal dialysate fluid in patients with dialysis-related peritonitis
Lin WT, Tsai CC, Chen CY, Lee WJ, Su CC, Wu YJ.
Ren Fail (2008) 30(8): 772-7
The small intestine proteome is changed in preterm pigs developing necrotizing enterocolitis in response to formula feeding
Jiang P, Siggers JL, Ngai HH, Sit WH, Sangild PT, Wan JM.
J Nutr (2008) 138(10): 1895-901
Identification of potential serum markers for nasopharyngeal carcinoma from a xenografted mouse model using Cy-dye labeling combined with three-dimensional fractionation
Chih-Ching Wu, Pei-Hua Peng, Ya-Ting Chang, Yu-Shan Huang, Kai-Ping Chang, Sheng-Po Hao, Ngan-Ming Tsang, Chau-Ting Yeh, Yu-Sun Chang, Jau-Song Yu
PROTEOMICS (2008) 8(17): 3605-3620
Simultaneous determination of endogenous deoxynucleotides and phosphorylated nucleoside reverse transcriptase inhibitors in peripheral blood mononuclear cells using ion-pair liquid chromatography coupled to mass spectrometry
Leon Coulier, Jeroen J. A. van Kampen, Ronald de Groot, Henk W. Gerritsen, Richard C. Bas, William D. van Dongen, Lars P. Brll, Theo M. Luider
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(10-11): 1557-1562
Evaluation of three different protocols of protein extraction for Arabidopsis thaliana leaf proteome analysis by two-dimensional electrophoresis
Ana M. Maldonado, Sira Echevarría-Zomeño, Sylvia Jean-Baptiste, Martha Hernandez and Jesus V. Jorrin-Novo
Journal of Proteomics (2008) 71(4): 461-472
A longitudinal study of the protein components of marsupial milk from birth to weaning in the tammar wallaby (Macropus eugenii)
Joss JL, Molloy MP, Hinds L, Deane E.
Dev Comp Immunol Early Edition: published 5-Sep-2008
Potential biomarkers of human salivary function: A modified proteomic approach
Rudney JD, Staikov RK, Johnson JD.
Arch Oral Biol Early Edition: published 17-Sep-2008
Proteomic characterization of primary diffuse large B-cell lymphomas in the central nervous system
Li J, Okamoto H, Yin C, Jagannathan J, Takizawa J, Aoki S, Gläsker S, Rushing EJ, Vortmeyer AO, Oldfield EH, Yamanaka R, Zhuang Z.
J Neurosurg (2008) 109(3): 536-546
Effects of Tetracycline Administration on the Proteomic Profile of Pig Muscle Samples (L. dorsi)
Gratacós-Cubarsí M, Castellari M, Hortós M, García-Regueiro JA, Lametsch R, Jessen F.
J Agric Food Chem Early Edition: published 9-Sep-2008
A high confidence, manually validated human blood plasma protein reference set
Schenk S, Schoenhals GJ, Souza GD, Mann M.
BMC Med Genomics (2008) 1(1): 41
Proteome profiling of human cerebrospinal fluid: exploring the potential of capillary electrophoresis with surface modified capillaries for analysis of complex biological samples
Zuberovic A, Hanrieder J, Hellman U, Bergquist J, Wetterhall M.
Eur J Mass Spectrom (Chichester, Eng) (2008) 14(4): 249-60
Cerebrospinal fluid proteomics - work in progress
Avasarala JR.
Eur J Neurol (2008) 15(9): 891-2
Proteomic identification of nitrated brain proteins in traumatic brain-injured rats treated postinjury with gamma-glutamylcysteine ethyl ester: Insights into the role of elevation of glutathione as a potential therapeutic strategy for traumatic brain injury
Reed TT, Owen J, Pierce WM, Sebastian A, Sullivan PG, Butterfield DA.
J Neurosci Res Early Edition: published 19-Sep-2008
Identification of secreted glycoproteins of human prostate and bladder stromal cells by comparative quantitative proteomics
Goo YA, Liu AY, Ryu S, Shaffer SA, Malmström L, Page L, Nguyen LT, Doneanu CE, Goodlett DR.
Prostate Early Edition: published 15-Sep-2008
Proteomic analysis of brain protein expression levels in NF-kappabeta p50 (-/-) homozygous knockout mice
Owen JB, Opii WO, Ramassamy C, Pierce WM, Butterfield DA.
Brain Res Early Edition: published 12-Sep-2008
Structural heterogeneity and protein composition of exosome-like vesicles (prostasomes) in human semen
Poliakov A, Spilman M, Dokland T, Amling CL, Mobley JA.
Prostate Early Edition: published 25-Sep-2008
Cytokinin-induced photomorphogenesis in dark-grown Arabidopsis: a proteomic analysis
Lochmanová G, Zdráhal Z, Konecná H, Koukalová S, Malbeck J, Soucek P, Válková M, Kiran NS, Brzobohaty B.
J Exp Bot Early Edition: published 5-Sep-2008
Glyphosate-induced oxidative stress in rice leaves revealed by proteomic approach
Ahsan N, Lee DG, Lee KW, Alam I, Lee SH, Bahk JD, Lee BH.
Plant Physiol Biochem Early Edition: published 19-Jul-2008
Protein tyrosine kinases and protein tyrosine phosphatases are involved in ABA-dependent processes in Arabidopsis thaliana seeds and suspension cells
Ghelis T, Bolbach G, Clodic G, Habricot Y, Miginiac E, Sotta B, Jeannette E.
Plant Physiol Early Edition: published 3-Sep-2008
Overexpression of heat shock protein 27 in squamous cell carcinoma of the uterine cervix: a proteomic analysis using archival formalin-fixed, paraffin-embedded tissues
Ono A, Kumai T, Koizumi H, Nishikawa H, Kobayashi S, Tadokoro M.
Hum Pathol Early Edition: published 26-Aug-2008
A new picture of cell wall protein dynamics in elongating cells of Arabidopsis thaliana: confirmed actors and newcomers
Irshad M, Canut H, Borderies G, Pont-Lezica R, Jamet E.
BMC Plant Biol (2008) 8(1): 94
Three-dimensional neuroblastoma cell culture: proteomic analysis between monolayer and multicellular tumor spheroids
Kumar HR, Zhong X, Hoelz DJ, Rescorla FJ, Hickey RJ, Malkas LH, Sandoval JA.
Pediatr Surg Int Early Edition: published 17-Sep-2008
Comparative peptidomics of Caenorhabditis elegans versus C. briggsae by LC-MALDI-TOF MS
Husson SJ, Landuyt B, Nys T, Baggerman G, Boonen K, Clynen E, Lindemans M, Janssen T, Schoofs L.
Peptides Early Edition: published 7-Aug-2008
Proteomic Analysis of Bovine Sperm YWHA Binding Partners Identify Proteins Involved in Signaling and Metabolism
Puri P, Myers K, Kline D, Vijayaraghavan S.
Biol Reprod Early Edition: published 27-Aug-2008
Identification of differentially expressed proteins between hybrid and parents in wheat (Triticum aestivum L.) seedling leaves
Song X, Ni Z, Yao Y, Zhang Y, Sun Q.
Theor Appl Genet Early Edition: published 25-Sep-2008
A joint transcriptomic, proteomic and metabolic analysis of maize endosperm development and starch filling
Prioul JL, Méchin V, Lessard P, Thévenot C, Grimmer M, Chateau-Joubert S, Coates S, Hartings H, Kloiber-Maitz M, Murigneux A, Sarda X, Damerval C, Edwards KJ.
Plant Biotechnol J Early Edition: published 16-Sep-2008
Two-dimensional gel electrophoresis of wool intermediate filament proteins
Louise N. Paton, Juliet A. Gerrard and Warren G. Bryson
Journal of Proteomics (2008) 71(4): 439-447
The proteome of rodent mesenteric lymph
Mittal A, Middleditch M, Ruggiero K, Buchanan CM, Jullig M, Loveday B, Cooper GJ, Windsor JA, Phillips AR.
Am J Physiol Gastrointest Liver Physiol Early Edition: published 4-Sep-2008
A robust method for proteomic characterization of mouse cartilage using solubility-based sequential fractionation and two-dimensional gel electrophoresis
Wilson R, Bateman JF.
Matrix Biol Early Edition: published 16-Aug-2008
Analysis of the protein expression profiling during rice callus differentiation under different plant hormone conditions
Yin L, Lan Y, Zhu L.
Plant Mol Biol Early Edition: published 25-Sep-2008
Evaluation of 2-D DIGE for skeletal muscle: Protocol and repeatability
Malm C, Hadrevi J, Bergstrom SA, Pedrosa-Domellof F, Antti H, Svensson M, Frangsmyr L.
Scand J Clin Lab Invest Early Edition: published 2-Sep-2008
Proteomic analysis of the retina: Removal of RPE alters outer segment assembly and retinal protein expression
Wang X, Nookala S, Narayanan C, Giorgianni F, Beranova-Giorgianni S, McCollum G, Gerling I, Penn JS, Jablonski MM.
Glia Early Edition: published 19-Sep-2008
Proteomic analysis of the peritrophic matrix from the gut of the caterpillar, Helicoverpa armigera
Campbell PM, Cao AT, Hines ER, East PD, Gordon KH.
Insect Biochem Mol Biol Early Edition: published 8-Aug-2008
Changes in the protein profile of Quercus ilex leaves in response to drought stress and recovery
Echevarría-Zomeño S, Ariza D, Jorge I, Lenz C, Del Campo A, Jorrín JV, Navarro RM.
J Plant Physiol Early Edition: published 6-Sep-2008
Dynamic Proteomic Analysis Reveals a Switch Between Central Carbon Metabolism and Alcoholic Fermentation in Oryza sativa Filling Grains
Xu SB, Li T, Deng ZY, Chong K, Xue Y, Wang T.
Plant Physiol Early Edition: published 27-Aug-2008
From complementarity to comprehensiveness - targeting the membrane proteome of growing Bacillus subtilis by divergent approaches
Hannes Hahne, Susanne Wolff, Michael Hecker, Drte Becher
PROTEOMICS (2008) 8(19): 4123-4136
Transgenic, Fluorescent Leishmania mexicana Allow Direct Analysis of the Proteome of Intracellular Amastigotes
Daniel Paape, Christoph Lippuner, Monika Schmid, Renate Ackermann, Martin E. Barrios-Llerena, Ursula Zimny-Arndt, Volker Brinkmann, Benjamin Arndt, Klaus Peter Pleissner, Peter R. Jungblut, and Toni Aebischer
Mol Cell Proteomics (2008) 7(9): 1688-1701
Identification and Network of Outer Membrane Proteins Regulating Streptomysin Resistance in Escherichia coli
Hui Li, Bao-Cheng Wang, Wen-Jiao Xu, Xiang-Min Lin, and Xuan-Xian Peng
JOURNAL OF PROTEOME RESEARCH (2008) 7(9): 4040-4049
Identification of immunogenic cell wall-associated proteins of Streptococcus suis serotype 2
Anding Zhang, Chunyan Xie, Huanchun Chen, Meilin Jin
PROTEOMICS (2008) 8(17): 3506-3515
Exopolymer Biosynthesis and Proteomic Changes of Pseudomonas sp. HK-6 Under Stress of TNT (2,4,6-Trinitrotoluene)
Lee BU, Park SC, Cho YS, Oh KH.
Curr Microbiol Early Edition: published 20-Sep-2008
Proteome analysis of Porphyromonas gingivalis cells placed in a subcutaneous chamber of mice
Yoshimura M, Ohara N, Kondo Y, Shoji M, Okano S, Nakano Y, Abiko Y, Nakayama K.
Oral Microbiol Immunol (2008) 23(5): 413-8
Identification and Characterization of Novel Immunogenic Proteins of Streptococcus suis Serotype 2
Hongran Geng, Li Zhu, Yuan Yuan, Wei Zhang, Wenjun Li, Jie Wang, Yuling Zheng, Kaihua Wei, Wuchun Cao, Hengliang Wang, and Yongqiang Jiang
JOURNAL OF PROTEOME RESEARCH (2008) 7(9): 4132-4142
The Ser/Thr/Tyr phosphoproteome of Lactococcus lactis IL1403 reveals multiply phosphorylated proteins
Boumediene Soufi, Florian Gnad, Peter Ruhdal Jensen, Dina Petranovic, Matthias Mann, Ivan Mijakovic, Boris Macek
PROTEOMICS (2008) 8(17): 3486-3493
Proteomics integrated with Escherichia coli vector-based vaccines and antigen microarrays reveals the immunogenicity of a surface sialidase-like protein of Propionibacterium acnes
Cheng-Po Huang, Yu-Tsueng Liu, Teruaki Nakatsuji, Yang Shi, Richard R. Gallo, Shwu-Bin Lin, Chun-Ming Huang
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(9): 1234-1245
Application of free-flow electrophoresis/2-dimentional gel electrophoresis for fractionation and characterization of native proteome of Pseudomonas putida KT2440
Choi CW, Hong YS, Kim SI.
J Microbiol (2008) 46(4): 448-55
Quantitative analysis of the intramacrophagic Brucella suis proteome reveals metabolic adaptation to late stage of cellular infection
Sascha Al Dahouk, Vronique Jubier-Maurin, Holger C. Scholz, Herbert Tomaso, Wolfram Karges, Heinrich Neubauer, Stephan Khler
PROTEOMICS (2008) 8(18): 3862-3870
Proteome analysis at the subcellular level of the cyanobacterium Spirulina platensis in response to low-temperature stress conditions
Hongsthong A, Sirijuntarut M, Prommeenate P, Lertladaluck K, Porkaew K, Cheevadhanarak S, Tanticharoen M.
FEMS Microbiol Lett Early Edition: published 1-Sep-2008
Tuning Escherichia coli for membrane protein overexpression
Wagner S, Klepsch MM, Schlegel S, Appel A, Draheim R, Tarry M, Högbom M, van Wijk KJ, Slotboom DJ, Persson JO, de Gier JW.
Proc Natl Acad Sci U S A (2008) 105(38): 14371-6
Structural proteomics of the cell envelope of Gram-negative bacteria
Tieleman DP, Turner RJ, Vogel HJ, Weiner JH.
Biochim Biophys Acta (2008) 1778(9): 1697
Laboratory Maintenance of Ehrlichia chaffeensis and Ehrlichia canis and Recovery of Organisms for Molecular Biology and Proteomics Studies
Cheng C, Ganta RR.
Curr Protoc Microbiol (2008) Chapter 3: Unit3A.1.
Identification of components of the sigma B regulon in Listeria monocytogenes that contribute to acid and salt tolerance
Abram F, Starr E, Karatzas KA, Matlawska-Wasowska K, Boyd A, Wiedmann M, Boor KJ, Connally D, O'Byrne CP.
Appl Environ Microbiol Early Edition: published 19-Sep-2008
Bacterial membrane proteomics
Ansgar Poetsch, Dirk Wolters
PROTEOMICS (2008) 8(19): 4100-4122
Growth pattern and partial proteome of Mycobacterium avium subsp. paratuberculosis during the stress response to hypoxia and nutrient starvation
Gumber S, Taylor DL, Marsh IB, Whittington RJ.
Vet Microbiol Early Edition: published 5-Aug-2008
Proteomic analysis of proteins associated with tt-DDE induced toxicity in BEAS-2B cells
Lin PP, Yang MH, Liao PC, Wu HY, Chang LW, Tsai HT, Tyan YC.
Biochem Biophys Res Commun Early Edition: published 13-Sep-2008
Characterizing intercellular signaling peptides in drug addiction
Romanova EV, Hatcher NG, Rubakhin SS, Sweedler JV.
Neuropharmacology Early Edition: published 3-Aug-2008
Gene and protein expression following exposure to radiofrequency fields from mobile phones
Vanderstraeten J, Verschaeve L.
Environ Health Perspect (2008) 116(9): 1131-5
Global Liver Proteomics of Rats Exposed for Five Days to Phenobarbital Identifies Changes Associated with Cancer and with Cyp Metabolism
Dail MB, Shack LA, Chambers JE, Burgess SC.
Toxicol Sci Early Edition: published 16-Sep-2008
Mechanism of 3,4-methylenedioxymethamphetamine (MDMA, ecstasy)-mediated mitochondrial dysfunction in rat liver
Kwan-Hoon Moon, Vijay V. Upreti, Li-Rong Yu, Insong J. Lee, Xiaoying Ye, Natalie D. Eddington, Timothy D. Veenstra, Byoung-Joon Song
PROTEOMICS (2008) 8(18): 3906-3918
Proteomic detection of changes in protein expression induced by cordycepin in human hepatocellular carcinoma BEL-7402 cells
Shi P, Huang Z, Tan X, Chen G.
Methods Find Exp Clin Pharmacol (2008) 30(5): 347-53
Modifications by Olmesartan medoxomil treatment of the platelet protein profile of moderate hypertensive patients
Daniel Sacristn, Mara Marques, Jos J Zamorano-Len, Manuel Luque, Juan Armengol, Juan del Castillo, Javier Martn, Eva Delpn, Priscila Ramos-Mozo, Teresa P de Prada, Juan Tamargo, Alberto Barrientos, Carlos Macaya, Antonio Lpez-Farr
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(9): 1300-1312
Effects of Tetracycline Administration on the Proteomic Profile of Pig Muscle Samples (L. dorsi)
Gratacós-Cubarsí M, Castellari M, Hortós M, García-Regueiro JA, Lametsch R, Jessen F.
J Agric Food Chem Early Edition: published 9-Sep-2008
Responses of the marine bacterium Pseudomonas fluorescens to an excess of heavy metals: Physiological and biochemical aspects
Poirier I, Jean N, Guary JC, Bertrand M.
Sci Total Environ Early Edition: published 13-Sep-2008
Comparative proteomic study of arsenic-induced differentially expressed proteins in rice roots reveals glutathione plays a central role during As stress
Nagib Ahsan, Dong-Gi Lee, Iftekhar Alam, Pil Joo Kim, Jeung Joo Lee, Young-Ock Ahn, Sang-Soo Kwak, In-Jung Lee, Jeong Dong Bahk, Kyu Young Kang, Jenny Renaut, Setsuko Komatsu, Byung-Hyun Lee
PROTEOMICS (2008) 8(17): 3561-3576
Exopolymer Biosynthesis and Proteomic Changes of Pseudomonas sp. HK-6 Under Stress of TNT (2,4,6-Trinitrotoluene)
Lee BU, Park SC, Cho YS, Oh KH.
Curr Microbiol Early Edition: published 20-Sep-2008
Microfluidic array platform for simultaneous lipid bilayer membrane formation
Zagnoni M, Sandison ME, Morgan H.
Biosens Bioelectron Early Edition: published 23-Jul-2008
Applications of protein microarrays for biomarker discovery
Niroshan Ramachandran, Sanjeeva Srivastava, Joshua LaBaer
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(10-11): 1444-1459
Analysis of the human immune response to vaccinia by use of a novel protein microarray suggests that antibodies recognize less than 10% of the total viral proteome
Kara Schmid, Sarah L. Keasey, Phillip Pittman, Ginny L. Emerson, James Meegan, Alexander P. Tikhonov, Gengxin Chen, Barry Schweitzer, Robert G. Ulrich
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(10-11): 1528-1538
Photocleavage-based affinity purification and printing of cell-free expressed proteins: Application to proteome microarrays
Lim M, Rothschild KJ.
Anal Biochem Early Edition: published 12-Aug-2008
Tracking humoral responses using self assembling protein microarrays
Niroshan Ramachandran, Karen S. Anderson, Jacob V. Raphael, Eugenie Hainsworth, Sahar Sibani, Wagner R. Montor, Marcin Pacek, Jessica Wong, Mariam Eljanne, Martin G. Sanda, Yanhui Hu, Tanya Logvinenko, Joshua LaBaer
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(10-11): 1518-1527
A well-based reverse-phase protein array applicable to extracts from formalin-fixed paraffin-embedded tissue
Joon-Yong Chung, Seo-Jin Lee, Ylaya Kris, Till Braunschweig, June L. Traicoff, Stephen M. Hewitt
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(10-11): 1539-1547
Evaluation of microarray surfaces and arraying parameters for autoantibody profiling
Imelda Balboni, Cindy Limb, Jessica D. Tenenbaum, Paul J. Utz
PROTEOMICS (2008) 8(17): 3443-3449
Peptide microarrays: next generation biochips for detection, diagnostics and high-throughput screening
Uttamchandani M, Yao SQ.
Curr Pharm Des (2008) 14(24): 2428-38
Antibody technology in proteomics
Dirk Saerens, Gholamreza Hassanzadeh Ghassabeh, and Serge Muyldermans
Brief Funct Genomic Proteomic (2008) 7(4): 275-282
Dicarbonyls linked to damage in the powerhouse: glycation of mitochondrial proteins and oxidative stress
Rabbani N, Thornalley PJ.
Biochem Soc Trans (2008) 36(Pt 5): 1045-50
Population Studies of Vitamin D Binding Protein Microheterogeneity by Mass Spectrometry Lead to Characterization of its Genotype-Dependent O-Glycosylation Patterns
Chad R. Borges, Jason W. Jarvis, Paul E. Oran, and Randall W. Nelson
JOURNAL OF PROTEOME RESEARCH (2008) 7(9): 4143-4153
Proteomic analysis of the oxidation of cysteine residues in human age-related nuclear cataract lenses
Hains PG, Gerega S, Truscott RJ.
Biochim Biophys Acta Early Edition: published 8-Aug-2008
Proteome-wide prediction of PKA phosphorylation sites in eukaryotic kingdom
Gao X, Jin C, Ren J, Yao X, Xue Y.
Genomics Early Edition: published 22-Sep-2008
Clinical application of functional glycoproteomics - dissection of glycotopes carried by soluble CD44 variants in sera of patients with cancers
Khe-Ti Lim, Keiko Miyazaki, Naoko Kimura, Mineko Izawa, Reiji Kannagi
PROTEOMICS (2008) 8(16): 3263-3273
Structural modifications of serum transthyretin in rats during protein-energy malnutrition
Andrea Henze, Sascha Rohn, Beate Gericke, Jens Raila, Florian J. Schweigert
Rapid Communications in Mass Spectrometry (2008) 22(20): 3270-3274
Efficient approaches for characterizing ubiquitinated proteins
Hjerpe R, Rodríguez MS.
Biochem Soc Trans (2008) 36(Pt 5): 823-7
Species identification of Oetzi's clothing with matrix-assisted laser desorption/ionization time-of-flight mass spectrometry based on peptide pattern similarities of hair digests
Klaus Hollemeyer, Wolfgang Altmeyer, Elmar Heinzle, Christian Pitra
Rapid Communications in Mass Spectrometry (2008) 22(18): 2751-2767
Fucosylated haptoglobin is a novel marker for pancreatic cancer: Detailed analyses of oligosaccharide structures
Eiji Miyoshi, Miyako Nakano
PROTEOMICS (2008) 8(16): 3257-3262
GPS 2.0, a Tool to Predict Kinase-specific Phosphorylation Sites in Hierarchy
Yu Xue, Jian Ren, Xinjiao Gao, Changjiang Jin, Longping Wen, and Xuebiao Yao
Mol Cell Proteomics (2008) 7(9): 1598-1608
GlycoMiner: a new software tool to elucidate glycopeptide composition
Ozohanics O, Krenyacz J, Ludányi K, Pollreisz F, Vékey K, Drahos L.
Rapid Commun Mass Spectrom (2008) 22(20): 3245-3254
Identification of N-linked glycoproteins in human milk by hydrophilic interaction liquid chromatography and mass spectrometry
Gianluca Picariello, Pasquale Ferranti, Gianfranco Mamone, Peter Roepstorff, Francesco Addeo
PROTEOMICS (2008) 8(18): 3833-3847
Selective isolation of N-terminal peptides from proteins and their de novo sequencing by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry without regard to unblocking or blocking of N-terminal amino acids
Minoru Yamaguchi, Daisuke Nakayama, Keisuke Shima, Hiroki Kuyama, Eiji Ando, Taka-aki Okamura, Norikazu Ueyama, Takashi Nakazawa, Shigemi Norioka, Osamu Nishimura, Susumu Tsunasawa
Rapid Communications in Mass Spectrometry (2008) 22(20): 3313-3319
Aberrant expression of glycosylation in juvenile gastrointestinal stromal tumors
Tsuyoshi Takahashi, Tetsuji Naka, Minoru Fujimoto, Satoshi Serada, Jirou Horino, Fumitaka Terabe, Seiichi Hirota, Eiji Miyoshi., Toshihiro Hirai, Kiyokazu Nakajima, Akiko Nishitani, Yoshihito Souma, Yoshiki Sawa, Toshirou Nishida
PROTEOMICS - CLINICAL APPLICATIONS (2008) 2(9): 1246-1254