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SPS' DigestIssue 58, 30-Jan-2009 |
Improving peptide identification using an empirical peptide retention time database
Sun W, Zhang L, Yang R, Shao C, Zhang Z, Gao Y.
Rapid Commun Mass Spectrom (2008) 23(1): 109-118
Knowledge-based computational intelligence development for predicting protein secondary structures from sequences
Hong-Bin Shen, Dong-Liang Yi, Li-Xiu Yao, Jie Yang, and Kuo-Chen Chou
Expert Review of Proteomics (2008) 5(5): 653-662
An integrative domain-based approach to predicting protein-protein interactions
Nguyen TP, Ho TB.
J Bioinform Comput Biol (2008) 6(6): 1115-32
A suite of tools to analyse and publish 2-DE data
Christine Hoogland, Daniel Walther, Patricia M. Palagi, Gérard Bouchet, Khaled Mostaguir, Xavier Robin, Ron D. Appel, Frédérique Lisacek
PROTEOMICS (2008) 8(23-24): 4907-4909
Breast Cancer Diagnosis from Proteomic Mass Spectrometry Data: A Comparative Evaluation
Hand DJ.
Stat Appl Genet Mol Biol (2008) 7(2): Article15
Integrated Bioinformatics for Radiation-Induced Pathway Analysis from Proteomics and Microarray Data
Hu ZZ, Huang H, Cheema A, Jung M, Dritschilo A, Wu CH.
J Proteomics Bioinform (2008) 1(2): 47-60
Overcoming function annotation errors in the Gram-positive pathogen Streptococcus suis by a proteomics-driven approach
Rodriguez-Ortega MJ, Luque I, Tarradas C, Barcena JA.
BMC Genomics (2008) 9(1): 588
Computational Analysis and Experimental Validation of Gene Predictions in Toxoplasma gondii
Dybas JM, Madrid-Aliste CJ, Che FY, Nieves E, Rykunov D, Angeletti RH, Weiss LM, Kim K, Fiser A.
PLoS ONE (2008) 3(12): e3899
Alignment-Independent Techniques for Protein Classification
Davies, Matthew N.; Secker, Andrew; Freitas, Alex A.; Timmis, Jon; Clark, Edward; Flower, Darren R.
Current Proteomics (2008) 5(4): 217-223
Sparse combinatorial inference with an application in cancer biology
Sach Mukherjee, Steven Pelech, Richard M. Neve, Wen-Lin Kuo, Safiyyah Ziyad, Paul T. Spellman, Joe W. Gray, and Terence P. Speed
Bioinformatics (2009) 25(2): 265-271
KEPE--a motif frequently superimposed on sumoylation sites in metazoan chromatin proteins and transcription factors
Francesca Diella, Sophie Chabanis, Katja Luck, Claudia Chica, Chenna Ramu, Claus Nerlov, and Toby J. Gibson
Bioinformatics (2009) 25(1): 1-5
An integrative genomic and proteomic approach to chemosensitivity prediction
Ma Y, Ding Z, Qian Y, Wan YW, Tosun K, Shi X, Castranova V, Harner EJ, Guo NL.
Int J Oncol (2009) 34(1): 107-15
Prediction of surface exposed proteins in Streptococcus pyogenes, with a potential application to other Gram-positive bacteria
Aleksandr Barinov, Valentin Loux, Amal Hammani, Pierre Nicolas, Philippe Langella, Dusko Ehrlich, Emmanuelle Maguin, Maarten van de Guchte
PROTEOMICS (2009) 9(1): 61-73
A method based on bead flows for spot detection on 2-D gel images
Olivier Langella, Michel Zivy
PROTEOMICS (2008) 8(23-24): 4914-4918
Amino Acid Sequence Database Suitable for the Protein and Proteome Analysis
Kawakami, Takao; Ozaki, Junko; Kondo, Kazuhiro; Sato, Shinji; Yunokawa, Harunobu
Current Proteomics (2008) 5(4): 267-275
Phospholipid scramblases and Tubby-like proteins belong to a new superfamily of membrane tethered transcription factors
Alex Bateman, Robert D. Finn, Peter J. Sims, Therese Wiedmer, Andreas Biegert, and Johannes Soding
Bioinformatics (2009) 25(2): 159-162
Identification of structurally conserved residues of proteins in absence of structural homologs using neural network ensemble
Ganesan Pugalenthi, Ke Tang, P. N. Suganthan, and Saikat Chakrabarti
Bioinformatics (2009) 25(2): 204-210
NetPhosBac - A predictor for Ser/Thr phosphorylation sites in bacterial proteins
Martin Lee Miller, Boumediene Soufi, Carsten Jers, Nikolaj Blom, Boris Macek, Ivan Mijakovic
PROTEOMICS (2009) 9(1): 116-125
MINOMICS: visualizing prokaryote transcriptomics and proteomics data in a genomic context
Rutger W. W. Brouwer, Sacha A. F. T. van Hijum, and Oscar P. Kuipers
Bioinformatics (2009) 25(1): 139-140
MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
Cox J, Mann M.
Nat Biotechnol (2008) 26(12): 1367-72
Human Gene and Protein Database (HGPD): a novel database presenting a large quantity of experiment-based results in human proteomics
Maruyama Y, Wakamatsu A, Kawamura Y, Kimura K, Yamamoto J, Nishikawa T, Kisu Y, Sugano S, Goshima N, Isogai T, Nomura N.
Nucl Acids Res (2009) 37(Database issue): D762-6
Application of Network Theory in Understanding and Predicting Protein Structure and Function
Galan, Jhenny F.; Gao, Jun; Pabuwal, Vagmita; Meek, Peter J.; Li, Zhijun
Current Proteomics (2008) 5(3): 181-190
Algorithms for automatic processing of data from mass spectrometric analyses of lipids
Song H, Ladenson J, Turk J.
J Chromatogr B Early Edition: published 25-Dec-2008
Statistical Application and Challenges in Global Gel-Free Proteomic Analysis by Mass Spectrometry
Nie L, Wu G, Zhang W.
Crit Rev Biotechnol Early Edition: published 24-Nov-2008
A sparse PLS for variable selection when integrating omics data
Lê Cao KA, Rossouw D, Robert-Granié C, Besse P.
Stat Appl Genet Mol Biol (2008) 7: Article 35
Pan-specific MHC class I predictors: a benchmark of HLA class I pan-specific prediction methods
Hao Zhang, Claus Lundegaard, and Morten Nielsen
Bioinformatics (2009) 25(1): 83-89
The protein structure initiative structural genomics knowledgebase
Berman HM, Westbrook JD, Gabanyi MJ, Tao W, Shah R, Kouranov A, Schwede T, Arnold K, Kiefer F, Bordoli L, Kopp J, Podvinec M, Adams PD, Carter LG, Minor W, Nair R, Baer JL.
Nucl Acids Res (2009) 37(Database issue): D365-8
Information management for proteomics: a perspective
Marc R Wilkins, Jonathan W Arthur, F Keith Junius, Mathew J Harrison,
Expert Review of Proteomics (2008) 5(5): 663-678
EchoLOCATION: an in silico analysis of the subcellular locations of Escherichia coli proteins and comparison with experimentally derived locations
Richard S. P. Horler, Andrew Butcher, Nikitas Papangelopoulos, Peter D. Ashton, and Gavin H. Thomas
Bioinformatics (2009) 25(2): 163-166
An Extended Markov Blanket Approach to Proteomic Biomarker Detection from High-Resolution Mass Spectrometry Data
Oh J, Gurnani P, Schorge J, Rosenblatt K, Gao J.
IEEE Trans Inf Technol Biomed Early Edition: published 31-Dec-2008
IntelliMS: A platform to efficiently manage and visualize tandem mass spectral data
Min-Seok Kwon, Hyoung-Joo Lee, Seul-Ki Jeong, Eun-Young Lee, Sang Yun Cho, Young-Ki Paik
PROTEOMICS (2008) 8(23-24): 4910-4913
Genome and proteome annotation: organization, interpretation and integration
Reeves GA, Talavera D, Thornton JM.
J R Soc Interface Early Edition: published 11-Nov-2008
AmiGO: online access to ontology and annotation data
Seth Carbon, Amelia Ireland, Christopher J. Mungall, ShengQiang Shu, Brad Marshall, Suzanna Lewis, the AmiGO Hub, and the Web Presence Working Group
Bioinformatics (2009) 25(2): 288-289
Spectral Dictionaries: Integrating de novo Peptide Sequencing with Database
Search of Tandem Mass Spectra
Mol Cell Proteomics (2009) 8(1): 53-69
Discovery and revision of Arabidopsis genes by proteogenomics
Castellana NE, Payne SH, Shen Z, Stanke M, Bafna V, Briggs SP.
Proc Natl Acad Sci U S A Early Edition: published 19-Dec-2008
Combining multiple positive training sets to generate confidence scores for protein-protein interactions
Jingkai Yu and Russell L. Finley, Jr
Bioinformatics (2009) 25(1): 105-111
A linear-time algorithm for predicting functional annotations from ppi networks
Wu Y, Lonardi S.
J Bioinform Comput Biol (2008) 6(6): 1049-65
RANKPROP: a web server for protein remote homology detection
Iain Melvin, Jason Weston, Christina Leslie, and William Stafford Noble
Bioinformatics (2009) 25(1): 121-122
Nitration of cathepsin D enhances its proteolytic activity during mammary gland remodeling after lactation
Zaragozá R, Torres L, GarcÃa C, Eroles P, Corrales F, Bosch A, Lluch A, GarcÃa-Trevijano ER, Viña JR.
Biochem J Early Edition: published 6-Jan-2009
Comparative proteomic analysis of human mesenchymal and embryonic stem cells: Towards the definition of a mesenchymal stem cell proteomic signature
Stephane Roche, Bruno Delorme, Robert A. J. Oostendorp, Romain Barbet, David Caton, Daniele Noel, Karim Boumediene, Helen A. Papadaki, Beatrice Cousin, Carole Crozet, Ollivier Milhavet, Louis Casteilla, Jacques Hatzfeld, Christian Jorgensen, Pierre Charbord, Sylvain Lehmann
PROTEOMICS (2009) 9(2): 223-232
Transcript and proteomic analysis of developing white lupin (Lupinus albus L.) roots
Tian L, Peel GJ, Lei Z, Aziz N, Dai X, He J, Watson B, Zhao PX, Sumner LW, Dixon RA.
BMC Plant Biol (2009) 9(1): 1
Adipose proteome analysis: focus on mediators of insulin resistance
Xiaoli Chen and Sonja Hess
Expert Review of Proteomics (2008) 5(6): 827-839
Analysis of cotton (Gossypium hirsutum) root proteomes during a compatible interaction with the black root rot fungus Thielaviopsis basicola
Joëlle V. F. Coumans, Anne Poljak, Mark J. Raftery, David Backhouse, Lily Pereg-Gerk
PROTEOMICS (2009) 9(2): 335-349
Rapid elevation of Inos and decreases in abundance of other proteins at pupal diapause termination in the flesh fly Sarcophaga crassipalpis
Li A, Michaud MR, Denlinger DL.
Biochim Biophys Acta Early Edition: published 11-Dec-2008
A proteomic approach for studying the pathogenesis of spontaneous equine recurrent uveitis (ERU)
Deeg CA.
Vet Immunol Immunopathol Early Edition: published 17-Oct-2008
Determination of in vivo disulfide-bonded proteins in Arabidopsis
Alvarez S, Wilson GH, Chen S.
J Chromatogr B (2009) 877(1-2): 101-4
Identification of proteins that modify cataract of mouse eye lens
Wolfgang Hoehenwarter, Yajun Tang, Renate Ackermann, Klaus-Peter Pleissner, Monika Schmid, Robert Stein, Ursula Zimny-Arndt, Nalin M. Kumar, Peter R. Jungblut
PROTEOMICS (2008) 8(23-24): 5011-5024
Differential regulation of proteins and phosphoproteins in rice under drought stress
Ke Y, Han G, He H, Li J.
Biochem Biophys Res Commun (2009) 379(1): 133-8
Proteomic analysis of human macrophages exposed to hypochlorite-oxidized low-density lipoprotein
Kang JH, Ryu HS, Kim HT, Lee SJ, Choi UK, Park YB, Huh TL, Choi MS, Kang TC, Choi SY, Kwon OS.
Biochim Biophys Acta Early Edition: published 6-Dec-2008
Characterization of the Placental Macrophage Secretome: Implications for Antiviral Activity
GarcÃa K, GarcÃa V, Pérez Laspiur J, Duan F, Meléndez LM.
Placenta (2009) 30(2): 149-55
Proteomic analysis of regenerated rabbit lenses reveal crystallin expression characteristic of adult rabbits
Liu X, Zhang M, Liu Y, Challa P, Gonzalez P, Liu Y.
Mol Vis (2008) 14: 2404-12
A PP2A Phosphatase High Density Interaction Network Identifies a Novel
Striatin-interacting Phosphatase and Kinase Complex Linked to the Cerebral
Mol Cell Proteomics (2009) 8(1): 157-171
A proteomic approach to identify differentially expressed plasma proteins between the fed and prolonged fasted states
Fabrice Bertile, Christine Schaeffer, Yvon Le Maho, Thierry Raclot, Alain Van Dorsselaer
PROTEOMICS (2009) 9(1): 148-158
Histoplasma capsulatum proteome response to decreased iron availability
Winters MS, Spellman DS, Chan Q, Gomez FJ, Hernandez M, Catron B, Smulian AG, Neubert TA, Deepe GS.
Proteome Science (2008) 6(1): 36
Molecular Characterization of Propionyllysines in Non-histone Proteins
Zhongyi Cheng, Yi Tang, Yue Chen, Sungchan Kim, Huadong Liu, Shawn S.C. Li,
Mol Cell Proteomics (2009) 8(1): 45-52
What can mitochondrial proteomics tell us about cardioprotection afforded by preconditioning?
D Brian Foster, Brian O'Rourke, and Jennifer E Van Eyk
Expert Review of Proteomics (2008) 5(5): 633-636
A study on the differential protein profiles in liver cells of heat stress rats with and without turpentine treatment
Rajaseger G, Lim CL, Wui LK, Saravanan P, Tang K, Gopalakrishnakone P, Eric YP, Lu J, Shabbir MM.
Proteome Science (2009) 7(1): 1
Proteomic analysis of changes in pea roots caused by the apoptosis-inducing concentration of salicylic acid
Tarchevsky IA, Yakovleva VG, Egorova AM.
Dokl Biochem Biophys (2008) 422: 274-8.
Proteomic Identification and Characterization of a Novel Peroxisomal Adenine Nucleotide Transporter Supplying ATP for Fatty Acid {beta}-Oxidation in Soybean and Arabidopsis
Arai Y, Hayashi M, Nishimura M.
Plant Cell Early Edition: published 10-Dec-2008
A functional proteomics approach links the ubiquitin-related modifier Urm1 to a tRNA modification pathway
Schlieker CD, Van der Veen AG, Damon JR, Spooner E, Ploegh HL.
Proc Natl Acad Sci U S A (2008) 105(47): 18255-60
Proteomic and metabolomic analysis of cardioprotection: Interplay between protein kinase C epsilon and delta in regulating glucose metabolism of murine hearts
Mayr M, Liem D, Zhang J, Li X, Avliyakulov NK, Yang JI, Young G, Vondriska TM, Ladroue C, Madhu B, Griffiths JR, Gomes A, Xu Q, Ping P.
J Mol Cell Cardiol (2009) 46(2): 268-77
Stem cell markers: Insights from membrane proteomics?
Sung-Min Ahn, Robert J. A. Goode, Richard J. Simpson
PROTEOMICS (2008) 8(23-24): 4946-4957
Proteomics of weakly bound cell wall proteins in rice calli
Chen XY, Kim ST, Cho WK, Rim Y, Kim S, Kim SW, Kang KY, Park ZY, Kim JY.
J Plant Physiol Early Edition: published 25-Nov-2008
Proteomic profiling of phosphoproteins and glycoproteins responsive to wild-type alpha-synuclein accumulation and aggregation
Kulathingal J, Ko LW, Cusack B, Yen SH.
Biochim Biophys Acta (2009) 1794(2): 211-24
Proteomics Identifies Thymidine Phosphorylase As a Key Regulator of the Angiogenic Potential of Colony-Forming Units and Endothelial Progenitor Cell Cultures
Pula G, Mayr U, Evans C, Prokopi M, Vara DS, Yin X, Astroulakis Z, Xiao Q, Hill J, Xu Q, Mayr M.
Circ Res (2009) 104(1): 32-40
Anti-apoptotic Action of Exendin-4 in INS-1 Beta Cells: Comparative Protein Pattern Analysis of Isolated Mitochondria
Tews D, Lehr S, Hartwig S, Osmers A, Paßlack W, Eckel J.
Horm Metab Res Early Edition: published 15-Dec-2008
Comparative proteome profiling of MCF10A and 184A1 human breast epithelial cells emphasized involvement of CDK4 and cyclin D3 in cell proliferation
Nimesh Bhaskaran, Kah Wai Lin, Aude Gautier, Hanna Woksepp, Ulf Hellman, Serhiy Souchelnytskyi
PROTEOMICS - CLINICAL APPLICATIONS (2009) 3(1): 68-77
Proteomic analysis of homocysteine induced proliferation of cultured neonatal rat vascular smooth muscle cells
Liu X, Shen J, Zhan R, Wang X, Wang X, Zhang Z, Leng X, Yang Z, Qian L.
Biochim Biophys Acta (2009) 1794(2): 177-84
Identification of in vitro phosphorylation sites in the Arabidopsis thaliana somatic embryogenesis receptor-like kinases
Rumyana Karlova, Sjef Boeren, Walter van Dongen, Mark Kwaaitaal, Jose Aker, Jacques Vervoort, Sacco de Vries
PROTEOMICS (2009) 9(2): 368-379
Combined proteomic and cytological analysis of Ca2+-calmodulin regulation in Picea meyeri pollen tube growth
Chen T, Wu X, Chen Y, Li X, Huang M, Zheng M, Baluska F, Samaj J, Lin J.
Plant Physiol Early Edition: published 14-Nov-2008
Application of Proteomic Techniques to Fruits and Vegetables
Song, Jun; Braun, Gordon
Current Proteomics (2008) 5(3): 191-201
Probing Circadian Rhythms in Chlamydomonas rheinhardtii by Functional Proteomics
Wagner V, Mittag M.
Methods Mol Biol (2009) 479: 1-16
Plant Defense Responses in Opium Poppy Cell Cultures Revealed by Liquid
Chromatography-Tandem Mass Spectrometry Proteomics
Mol Cell Proteomics (2009) 8(1): 86-98
The proteome of seed development in the model legume Lotus japonicus
Dam S, Laursen BS, Ornfelt JH, Jochimsen B, Stærfeldt HH, Friis C, Nielsen K, Goffard N, Besenbacher S, Krusell L, Sato S, Tabata S, Thogersen IB, Enghild JJ, Stougaard J.
Plant Physiol Early Edition: published 7-Jan-2009
Assessment of Doñana National Park contamination in Procambarus clarkii: Integration of conventional biomarkers and proteomic approaches
Vioque-Fernández A, Alves de Almeida E, López-Barea J.
Sci Total Environ Early Edition: published 24-Dec-2008
Proteomic analysis of Chlamydia pneumoniae-infected HL cells reveals extensive degradation of cytoskeletal proteins
Savijoki K, Alvesalo J, Vuorela P, Leinonen M, Kalkkinen N.
FEMS Immunol Med Microbiol (2008) 54(3): 375-84
A proteome reference map of Trichomonas vaginalis
Huang KY, Chien KY, Lin YC, Hsu WM, Fong IK, Huang PJ, Yueh YM, Gan RR, Tang P.
Parasitol Res Early Edition: published 5-Dec-2008
Proteomics Analysis of the Excretory/Secretory Component of the
Blood-feeding Stage of the Hookworm, Ancylostoma caninum
Mol Cell Proteomics (2009) 8(1): 109-121
Effector Proteins of the Bacterial Pathogen Pseudomonas syringae Alter the
Extracellular Proteome of the Host Plant, Arabidopsis thaliana
Mol Cell Proteomics (2009) 8(1): 145-156
On the estimation of false positives in peptide identifications using decoy search strategy
Changyu Shen, Quanhu Sheng, Jie Dai, Yixue Li, Rong Zeng, Haixu Tang
PROTEOMICS (2009) 9(1): 194-204
Proteomic analysis of membrane proteins expressed specifically in pluripotent murine embryonic stem cells
Atsushi Intoh, Akira Kurisaki, Yuko Yamanaka, Hisashi Hirano, Hiroyuki Fukuda, Hiromu Sugino, Makoto Asashima
PROTEOMICS (2009) 9(1): 126-137
Proteomics studies confirm the presence of alternative protein isoforms on a large scale
Tress ML, Bodenmiller B, Aebersold R, Valencia A.
Genome Biol (2008) 9(11): R162
Quantitative iTRAQ proteome and comparative transcriptome analysis of elicitor-induced Norway spruce (Picea abies) cells reveals elements of calcium signaling in the early conifer defense response
Dustin N. Lippert, Steven G. Ralph, Michael Phillips, Rick White, Derek Smith, Darryl Hardie, Jonathan Gershenzon, Kermit Ritland, Christoph H. Borchers, Jörg Bohlmann
PROTEOMICS (2009) 9(2): 350-367
Proteomic identification of carboxypeptidase E connects lipid-induced beta-cell apoptosis and dysfunction in type 2 diabetes
Johnson JD.
Cell Cycle (2009) 8(1): 38-42
Proteomic analysis and immunogenicity of secreted proteins from Rhodococcus equi ATCC 33701
Barbey C, Budin-Verneuil A, Cauchard S, Hartke A, Laugier C, Pichereau V, Petry S.
Vet Microbiol Early Edition: published 15-Oct-2008
Roles for Cavities in Protein Structure: New Insights
Dubey, Vikash K.; Jagannadham, M. V.
Current Proteomics (2008) 5(3): 157-160
Differential proteomic analysis of soluble extracellular proteins reveals the cysteine protease and cystatin involved in suspension-cultured cell proliferation in rice
Tian L, Zhang L, Zhang J, Song Y, Guo Y.
Biochim Biophys Acta Early Edition: published 11-Dec-2008
Identification and Characterization of Proteins Associated with Plant Tolerance to Heat Stress
Huang B, Xu C.
J Integr Plant Biol (2008) 50(10): 1230-1237
The Transcriptional Network Controlling Pluripotency in ES Cells
Orkin SH, Wang J, Kim J, Chu J, Rao S, Theunissen TW, Shen X, Levasseur DN.
Cold Spring Harb Symp Quant Biol Early Edition: published 6-Nov-2008
Proteomic analysis of Aspergillus nidulans cultured under hypoxic conditions
Motoyuki Shimizu, Tatsuya Fujii, Shunsuke Masuo, Kensaku Fujita, Naoki Takaya
PROTEOMICS (2009) 9(1): 7-19
Mechanism of Cancer Cell Adaptation to Metabolic Stress: Proteomics
Identification of a Novel Thyroid Hormone-mediated Gastric Carcinogenic
Mol Cell Proteomics (2009) 8(1): 70-85
Analysis of Extracellular Proteins of Aspergillus oryzae Grown on Soy Sauce Koji
Liang Y, Pan L, Lin Y.
Biosci Biotechnol Biochem (2009) 73(1): 192-5
Proteome-based epitopic peptide scanning along PSA
Stufano A, Kanduc D.
Exp Mol Pathol Early Edition: published 9-Dec-2008
Dissecting the proteome of pea mature seeds reveals the phenotypic plasticity of seed protein composition
Michael Bourgeois, Françoise Jacquin, Vincent Savois, Nicolas Sommerer, Valérie Labas, Céline Henry, Judith Burstin
PROTEOMICS (2009) 9(2): 254-271
Drought Stress and Preharvest Aflatoxin Contamination in Agricultural Commodity: Genetics, Genomics and Proteomics
Guo B, Chen ZY, Lee RD, Scully BT.
J Integr Plant Biol (2008) 50(10): 1281-1291
Proteomic analysis of Schistosoma mansoni proteins released during in vitro miracidium-to-sporocyst transformation
Wu XJ, Sabat G, Brown JF, Zhang M, Taft A, Peterson N, Harms A, Yoshino TP.
Mol Biochem Parasitol (2009) 164(1): 32-44
Structural identification by mass spectrometry of a novel antimicrobial peptide from the venom of the solitary bee Osmia rufa (Hymenoptera: Megachilidae)
Stöcklin R, Favreau P, Thai R, Pflugfelder J, Bulet P, Mebs D.
Toxicon Early Edition: published 14-Dec-2008
The Krebs Cycle and Mitochondrial Mass Are Early Victims of Endothelial Dysfunction: Proteomic Approach
Addabbo F, Ratliff B, Park HC, Kuo MC, Ungvari Z, Ciszar A, Krasnikof B, Sodhi K, Zhang F, Nasjletti A, Goligorsky MS.
Am J Pathol (2009) 174(1): 34-43
Utility of proteomics techniques for assessing protein expression
Natarajan SS, Xu C, Cregan P, Caperna TJ, Garrett WM, Luthria D.
Regul Toxicol Pharmacol Early Edition: published 24-Dec-2008
Proteomic profiles of embryonic development in the ascidian Ciona intestinalis
Nomura M, Nakajima A, Inaba K.
Dev Biol (2009) 325(2): 468-81
Establishment of a Protein Reference Map for Soybean Root Hair Cells
Brechenmacher L, Lee J, Sachdev S, Song Z, Nguyen TH, Joshi T, Oehrle N, Libault M, Mooney B, Xu D, Cooper B, Stacey G.
Plant Physiol Early Edition: published 26-Nov-2008
On the mechanisms of cadmium stress alleviation in Medicago truncatula by arbuscular mycorrhizal symbiosis: A root proteomic study
Achref Aloui, Ghislaine Recorbet, Armelle Gollotte, Franck Robert, Benoît Valot, Vivienne Gianinazzi-Pearson, Samira Aschi-Smiti, Eliane Dumas-Gaudot
PROTEOMICS (2009) 9(2): 420-433
Discovery and revision of Arabidopsis genes by proteogenomics
Castellana NE, Payne SH, Shen Z, Stanke M, Bafna V, Briggs SP.
Proc Natl Acad Sci U S A (2008) 105(52): 21034-8
A proteome analysis of the cadmium and mercury response in Corynebacterium glutamicum
Ali Fanous, Walter Weiss, Angelika Görg, Fritz Jacob, Harun Parlar
PROTEOMICS (2008) 8(23-24): 4976-4986
Proteomic analysis reveals Hrs ubiquitin-interacting motif-mediated ubiquitin signaling in multiple cellular processes
Pridgeon JW, Webber EA, Sha D, Li L, Chin LS.
FEBS J (2009) 276(1): 118-31
Effect of potato suberin on Streptomyces scabies proteome
Lauzier A, Simao-Beaunoir AM, Bourassa S, Poirier GG, Talbot B, Beaulieu C.
Mol Plant Pathol (2008) 9(6): 753-762
Defence reactions in the apoplastic proteome of oilseed rape (Brassica napus var. napus) attenuate Verticillium longisporum growth but not disease symptoms
Floerl S, Druebert C, Majcherczyk A, Karlovsky P, Kues U, Polle A.
BMC Plant Biol (2008) 8(1): 129
Profiling of T-cell receptor signaling complex assembly in human CD4 T-lymphocytes using RP protein arrays
Nicolò Costantino Brembilla, Isabelle Cohen-Salmon, Johann Weber, Curzio Rüegg, Manfredo Quadroni, Keith Harshman, Marie-Agnès Doucey
PROTEOMICS (2009) 9(2): 299-309
Computational Analysis and Experimental Validation of Gene Predictions in Toxoplasma gondii
Dybas JM, Madrid-Aliste CJ, Che FY, Nieves E, Rykunov D, Angeletti RH, Weiss LM, Kim K, Fiser A.
PLoS ONE (2008) 3(12): e3899
Mitochondrial Dysregulation of Osteoarthritic Human Articular Chondrocytes
Analyzed by Proteomics: A Decrease in Mitochondrial Superoxide Dismutase
Mol Cell Proteomics (2009) 8(1): 172-189
Placental Proteomics: A Shortcut to Biological Insight
Robinson JM, Vandré DD, Ackerman WE 4th.
Placenta Early Edition: published 12-Dec-2008
Effect of tunicamycin on Candida albicans biofilm formation and maintenance
Pierce CG, Thomas DP, López-Ribot JL.
J Antimicrob Chemother Early Edition: published 20-Dec-2008
Effect of cadmium exposure on the globin protein expression in 4th instar larvae of Chironomus riparius Mg. (Diptera: Chironomidae): An ecotoxicoproteomics approach
Jinhee Choi, Mi-Hee Ha
PROTEOMICS (2009) 9(1): 31-39
Proteomic analysis reveals protein changes within layer 2 of the insular cortex in schizophrenia
Kyla Pennington, Patrick Dicker, Michael J. Dunn, David R. Cotter
PROTEOMICS (2008) 8(23-24): 5097-5107
Proteomic analysis of head kidney tissue from high and low susceptibility families of channel catfish following challenge with Edwardsiella ictaluri
Booth NJ, Bilodeau-Bourgeois AL.
Fish Shellfish Immunol Early Edition: published 18-Mar-2008
Proteome Analysis for 3T3-L1 Adipocyte Differentiation
Atiar Rahman M, Kumar SG, Lee SH, Hwang HS, Kim HA, Yun JW.
J Microbiol Biotechnol (2008) 18(12): 1895-902
Characterization of PrEST-based antibodies towards human Cytokeratin-17
Larsson K, Eriksson C, Schwenk JM, Berglund L, Wester K, Uhlén M, Hober S, Wernérus H.
J Immunol Methods Early Edition: published 21-Dec-2008
Insight into the salt tolerance factors of a wild halophytic rice, Porteresia coarctata: a physiological and proteomic approach
Sengupta S, Majumder AL.
Planta Early Edition: published 7-Jan-2009
Proteomic analysis of salt-responsive proteins in mangrove plant, Bruguiera gymnorhiza
Tada Y, Kashimura T.
Plant Cell Physiol Early Edition: published 7-Jan-2009
Protein expression profile of Gasterophilus intestinalis larvae causing horse gastric myiasis and characterization of horse immune reaction
Roelfstra L, Deeg CA, Hauck SM, Buse C, Membrez M, Betschart B, Pfister K.
Parasit Vectors (2009) 2(1): 6
Quantitative Proteomics Analysis of Macrophage Rafts Reveals
Compartmentalized Activation of the Proteasome and of Proteasome-mediated
Mol Cell Proteomics (2009) 8(1): 201-213
Experimental analysis of the rice mitochondrial proteome, its biogenesis and heterogeneity
Huang S, Taylor NL, Narsai R, Eubel H, Whelan J, Millar AH.
Plant Physiol Early Edition: published 14-Nov-2008
Global analysis of cellular protein translation by pulsed SILAC
Björn Schwanhäusser, Manfred Gossen, Gunnar Dittmar, Matthias Selbach
PROTEOMICS (2009) 9(1): 205-209
Comparative proteomic analysis of apomictic monosomic addition line of Beta corolliflora and Beta vulgaris L. in sugar beet
Zhu H, Bi YD, Yu LJ, Guo DD, Wang BC.
Mol Biol Rep Early Edition: published 24-Dec-2008
Proteomic analysis of hepatic ischemia/reperfusion injury and ischemic preconditioning in mice revealed the protective role of ATP5?
Chengfu Xu, Xuequn Zhang, Chaohui Yu, Guohua Lu, Shaohua Chen, Liming Xu, Wei Ding, Qiaojuan Shi, Youming Li
PROTEOMICS (2009) 9(2): 409-419
Proteomic Profiling of the Insoluble Pellets of the Transected Rat Spinal Cord
Yan X, Liu T, Yang S, Ding Q, Liu Y, Zhang X, Que H, Wei K, Luo Z, Liu S.
J Neurotrauma Early Edition: published 2-Jan-2009
Secretome of animal trypanosomes
Holzmuller P, Grébaut P, Peltier JB, Brizard JP, Perrone T, Gonzatti M, Bengaly Z, Rossignol M, Aso PM, Vincendeau P, Cuny G, Boulangé A, Frutos R.
Ann N Y Acad Sci (2008) 1149: 337-42.
A Functional Proteomic Approach to the Identification and Characterization of Protein Composition in Wheat Leaf
Hsieh, Jung-Feng; Chen, Shui-Tein
Current Proteomics (2008) 5(4): 253-266
The Anopheles gambiae adult midgut peritrophic matrix proteome
Dinglasan RR, Devenport M, Florens L, Johnson JR, McHugh CA, Donnelly-Doman M, Carucci DJ, Yates JR 3rd, Jacobs-Lorena M.
Insect Biochem Mol Biol Early Edition: published 11-Nov-2008
Combining subproteome enrichment and Rubisco depletion enables identification of low abundance proteins differentially regulated during plant defense
Ivy Widjaja, Kai Naumann, Udo Roth, Noreen Wolf, David Mackey, Jeffery L. Dangl, Dierk Scheel, Justin Lee
PROTEOMICS (2009) 9(1): 138-147
Heat Pretreatment Alleviates UV-B Toxicity in the Cyanobacterium Anabaena doliolum: A Proteomic Analysis of Cross Tolerance
Mishra Y, Chaurasia N, Rai LC.
Photochem Photobiol Early Edition: published 4-Dec-2008
Proteome analysis of snake venom toxins: pharmacological insights
Dessislava Georgieva, Raghuvir K Arni, and Christian Betzel
Expert Review of Proteomics (2008) 5(6): 787-797
Expressed sequence tag analysis of guinea pig (Cavia porcellus) eye tissues for NEIBank
Simpanya MF, Wistow G, Gao J, David LL, Giblin FJ, Mitton KP.
Mol Vis (2008) 14: 2413-27
Microparticle Surface Proteins Are Associated With Experimental Venous Thrombosis: A Preliminary Study
Abdullah NM, Kachman M, Walker A, Hawley AE, Wrobleski SK, Myers DD, Strahler JR, Andrews PC, Michailidis GC, Ramacciotti E, Henke PK, Wakefield TW.
Clin Appl Thromb Hemost Early Edition: published 21-Nov-2008
Form follows function: Shape analysis of protein cavities for receptor-based drug design
Martin Weisel, Ewgenij Proschak, Jan M. Kriegl, Gisbert Schneider
PROTEOMICS (2009) 9(2): 451-459
Comparative proteome analysis of three mouse lung adenocarcinoma CMT cell lines with different metastatic potential by two-dimensional gel electrophoresis and mass spectrometry
Kelan Zhang, Krzysztof Wrzesinski, J. Fey Stephen, Peter Mose Larsen, Xumin Zhang, Peter Roepstorff
PROTEOMICS (2008) 8(23-24): 4932-4945
Comparative analysis of the islet proteome between NOD/Lt and ALR/Lt mice
Yang P, Li M, Guo D, Gong F, Adam BL, Atkinson MA, Wang CY.
Ann N Y Acad Sci (2008) 1150: 68-71.
Comparative proteomic analysis of mesenchymal stem cells derived from human bone marrow, umbilical cord, and placenta: Implication in the migration
Guo Li, Xiao-ai Zhang, Hua Wang, Xin Wang, Chun-ling Meng, Chu-yan Chan, David Tai Wai Yew, Kam Sze Tsang, Karen Li, Sau-na Tsai, Sai-ming Ngai, Zhong Chao Han, Marie Chia-mi Lin, Ming-liang He, Hsiang-fu Kung
PROTEOMICS (2009) 9(1): 20-30
Proteomic Survey of Large Macromolecular Complexes in D. vulgaris
Han B, Typke D, Glaeser R.
Microsc Microanal (2008) 14(Suppl 2): 1564-5
An investigation of hormesis of trichloroethylene in L-02 liver cells by differential proteomic analysis
Huang HY, Liu JJ, Xi RR, Xing XM, Yuan JH, Yang LQ, Tao GH, Gong CM, Zhuang ZX.
Mol Biol Rep Early Edition: published 25-Dec-2008
Identification of the Candida albicans Immunome During Systemic Infection by Mass Spectrometry
Pitarch A, Nombela C, Gil C.
Methods Mol Biol (2009) 470: 187-235
Prediction of flocculation ability of brewing yeast inoculates by flow cytometry, proteome analysis, and mRNA profiling
Heine F, Stahl F, Sträuber H, Wiacek C, Benndorf D, Repenning C, Schmidt F, Scheper T, von Bergen M, Harms H, Müller S.
Cytometry A (2008) 75A(2): 140-147
A comparative proteome approach to decipher the mechanism of rice adaptation to phosphorous deficiency
Sepideh Torabi, Matthias Wissuwa, Manzar Heidari, Mohammad-Reza Naghavi, Kambiz Gilany, Mohammad-Reza Hajirezaei, Mansoor Omidi, Bahman Yazdi-Samadi, Abdelbagi M. Ismail, Ghasem Hosseini Salekdeh
PROTEOMICS (2009) 9(1): 159-170
Proteomic analysis of the mosquito Aedes aegypti midgut brush border membrane vesicles
Popova-Butler A, Dean DH.
J Insect Physiol Early Edition: published 5-Jan-2009
Guard Cell Proteome Reveals Signals and Surprises
Mach J.
Plant Cell Early Edition: published 29-Dec-2008
Proteomic Profiling of Serologic Response to Candida albicans During Host-Commensal and Host-Pathogen Interactions
Pitarch A, Nombela C, Gil C.
Methods Mol Biol (2009) 470: 369-411
Quantitative Proteomics Reveals GIMAP Family Proteins 1 and 4 to Be
Differentially Regulated during Human T Helper Cell Differentiation
Mol Cell Proteomics (2009) 8(1): 32-44
Activity-based probes as a tool for functional proteomic analysis of proteases
Marko Fonovic and Matthew Bogyo
Expert Review of Proteomics (2008) 5(5): 721-730
Comprehensive phylogenetic analysis of evolutionarily conserved rRNA adenine dimethyltransferase suggests diverse bacterial contributions to the nucleus-encoded plastid proteome
Park AK, Kim H, Jin HJ.
Mol Phylogenet Evol (2009) 50(2): 282-9
Comparative proteomic analysis of rat juvenile and adult dura
Song T, Bi N, Peng Z, Gui L, Chen BS.
Chin Med J (Engl) (2008) 121(18): 1815-20
Comparative proteomic analysis of the insulin-induced L6 myotube secretome
Jong Hyuk Yoon, Kyungmoo Yea, Jaeyoon Kim, Yoon Sup Choi, Sehoon Park, Hyeongji Lee, Chang Sup Lee, Pann-Ghill Suh, Sung Ho Ryu
PROTEOMICS (2009) 9(1): 51-60
In-depth, high-accuracy proteomics of sea urchin tooth matrix
Mann K, Poustka AJ, Mann M.
Proteome Science (2008) 6(1): 33
Combining RNA interference mutants and comparative proteomics to identify protein components and dependencies in a eukaryotic flagellum
Portman N, Lacomble S, Thomas B, McKean PG, Gull K.
J Biol Chem Early Edition: published 11-Dec-2008
Response of jujube fruits to exogenous oxalic acid treatment based on proteomic analysis
Wang Q, Lai T, Qin G, Tian S.
Plant Cell Physiol Early Edition: published 9-Dec-2008
Proteomics of Juvenile Senegal Sole (Solea senegalensis) Affected by Gas Bubble Disease in Hyperoxygenated Ponds
Salas-Leiton E, Cánovas-Conesa B, Zerolo R, López-Barea J, Cañavate JP, Alhama J.
Mar Biotechnol (NY) Early Edition: published 20-Dec-2008
Proteomic analysis of excretory/secretory products released by Teladorsagia circumcincta larvae early post-infection
Smith SK, Nisbet AJ, Meikle LI, Inglis NF, Sales J, Beynon RJ, Matthews JB.
Parasite Immunol (2009) 31(1): 10-9
In vivo phosphorylation sites of barley tonoplast proteins identified by a phosphoproteomic approach
Anne Endler, Sonja Reiland, Bertran Gerrits, Ulrike G. Schmidt, Sacha Baginsky, Enrico Martinoia
PROTEOMICS (2009) 9(2): 310-321
A comprehensive analysis of Trypanosoma brucei mitochondrial proteome
Aswini K. Panigrahi, Yuko Ogata, Alena Zíková, Atashi Anupama, Rachel A. Dalley, Nathalie Acestor, Peter J. Myler, Kenneth D. Stuart
PROTEOMICS (2009) 9(2): 434-450
Impaired mitochondrial respiration and protein nitration in the rat hippocampus after acute inhalation of combustion smoke
Lee HM, Reed J, Greeley GH Jr, Englander EW.
Toxicol Appl Pharmacol Early Edition: published 24-Dec-2008
Probing mechanisms of axonopathy. Part II: Protein targets of 2,5-hexanedione, the neurotoxic metabolite of the aliphatic solvent n-hexane
Tshala-Katumbay D, Monterroso V, Kayton R, Lasarev M, Sabri M, Spencer P.
Toxicol Sci (2009) 107(2): 482-9
The proteome of rat olfactory sensory cilia
Ulrich Mayer, Alexander Küller, Philipp C. Daiber, Inge Neudorf, Uwe Warnken, Martina Schnölzer, Stephan Frings, Frank Möhrlen
PROTEOMICS (2009) 9(2): 322-334
Co-inhibition of Plasmodium falciparum S-adenosylmethionine decarboxylase/ornithine decarboxylase reveals perturbation-specific compensatory mechanisms by transcriptome, proteome and metabolome analyses
van Brummelen AC, Olszewski KL, Wilinski D, Llinás M, Louw AI, Birkholtz LM.
J Biol Chem Early Edition: published 10-Dec-2008
Response of the cytoplasmic and membrane proteome of Corynebacterium glutamicum ATCC 13032 to pH changes
Barriuso-Iglesias M, Schluesener D, Barreiro C, Poetsch A, Martin JF.
BMC Microbiol (2008) 8(1): 225
Benzothiadiazole affects the leaf proteome in arctic bramble (Rubus arcticus)
Hukkanen A, Kokko H, Buchala A, Häyrinen J, Kärenlampi S.
Mol Plant Pathol (2008) 9(6): 799-808
Proteomic analysis of outer membrane proteins from Acinetobacter baumannii DU202 in tetracycline stress condition
Yun SH, Choi CW, Park SH, Lee JC, Leem SH, Choi JS, Kim S, Kim SI.
J Microbiol (2008) 46(6): 720-7
Proteome and peptidome profiling of spider venoms
Songping Liang
Expert Review of Proteomics (2008) 5(5): 731-746
Proteomic Profiling in Early Venous Stenosis Formation in a Porcine Model of Hemodialysis Graft
Misra S, Fu AA, Puggioni A, Glockner JF, McKusick MA, Bjarnason H, Mukhopadhyay D.
J Vasc Interv Radiol (2009) 20(2): 241-51
Innovative contribution of mass spectrometry for characterising staphylococcal enterotoxins involved in food poisoning outbreaks
Hennekinne JA, Brun V, De Buyser ML, Dupuis A, Ostyn A, Dragacci S.
Appl Environ Microbiol (2009) 75(3): 882-4
Activity profiling of platelets by chemical proteomics
Jason W. H. Wong, James P. McRedmond, Gerard Cagney
PROTEOMICS (2009) 9(1): 40-50
Genetic Variation Underlying Protein Expression in Eggs of the Marine
Mussel Mytilus edulis
Mol Cell Proteomics (2009) 8(1): 132-144
Two-dimensional electrophoresis-based characterization of post-translational modifications of mammalian 20S proteasome complexes
Chenggong Zong, Glen W. Young, Yueju Wang, Haojie Lu, Ning Deng, Oliver Drews, Peipei Ping
PROTEOMICS (2008) 8(23-24): 5025-5037
Contributions of functional genomics and proteomics to the study of immune responses in the Pacific white leg shrimp Litopenaeus vannamei
Robalino J, Carnegie RB, O'Leary N, Ouvry-Patat SA, de la Vega E, Prior S, Gross PS, Browdy CL, Chapman RW, Schey KL, Warr G.
Vet Immunol Immunopathol Early Edition: published 5-Nov-2008
Functional Proteomics of Arabidopsis thaliana Guard Cells Uncovers New Stomatal Signaling Pathways
Zhao Z, Zhang W, Stanley BA, Assmann SM.
Plant Cell Early Edition: published 29-Dec-2008
Quantitative mass spectrometry-based techniques for clinical use: Biomarker identification and quantification
Simpson KL, Whetton AD, Dive C.
J Chromatogr B Early Edition: published 18-Nov-2008
Mass Spectrometry-Based Proteomic Analysis of Urine in Acute Kidney Injury Following Cardiopulmonary Bypass: A Nested Case-Control Study
Ho J, Lucy M, Krokhin O, Hayglass K, Pascoe E, Darroch G, Rush D, Nickerson P, Rigatto C, Reslerova M.
Am J Kidney Dis Early Edition: published 12-Dec-2008
Adaptation of the rat cardiac proteome in response to intensity-controlled endurance exercise
Jatin G. Burniston
PROTEOMICS (2009) 9(1): 106-115
Proteomic analysis of human osteoprogenitor response to disordered nanotopography
Kantawong F, Burchmore R, Gadegaard N, Oreffo RO, Dalby MJ.
J R Soc Interface Early Edition: published 9-Dec-2008
2-D DIGE profiling of hepatocellular carcinoma tissues identified isoforms of far upstream binding protein (FUBP) as novel candidates in liver carcinogenesis
Ramdzan M. Zubaidah, Gek San Tan, Sandra B. E. Tan, Seng Gee Lim, Qingsong Lin, Maxey C. M. Chung
PROTEOMICS (2008) 8(23-24): 5086-5096
Shotgun proteomics implicates extracellular matrix proteins and protease systems in neuronal development induced by astrocyte cholinergic stimulation
Moore NH, Costa LG, Shaffer SA, Goodlett DR, Guizzetti M.
J Neurochem Early Edition: published 10-Dec-2008
Comparative plasma membrane-associated proteomics of immortalized human hepatocytes
Gou LT, Tong AP, Chen LJ, Tang MH, Chen B, Liang SF, Huang C, Wei YQ.
Biochemistry (Mosc) (2008) 73(11): 1200-6
Proteomic and immunologic analyses of brain tumor exosomes
Graner MW, Alzate O, Dechkovskaia AM, Keene JD, Sampson JH, Mitchell DA, Bigner DD.
FASEB J Early Edition: published 24-Dec-2008
Mammary serine protease inhibitor inhibits epithelial growth factor-induced epithelial-mesenchymal transition of esophageal carcinoma cells
Cai Z, Zhou Y, Lei T, Chiu JF, He QY.
Cancer (2009) 115(1): 36-48
Proteomic analysis of breast cancer tissue reveals upregulation of actin-remodeling proteins and its relevance to cancer invasiveness
Dong-Hyun Kim, Jinhee Bae, Jong Won Lee, Seon-Young Kim, Yong-Hak Kim, Ji-Yeon Bae, Jae Kyo Yi, Myeong-Hee Yu, Dong-Young Noh, Cheolju Lee
PROTEOMICS - CLINICAL APPLICATIONS (2009) 3(1): 30-40
Chromosomal and proteome analysis of a new T24-based cell line model for aggressive bladder cancer
Manousos Makridakis, Sarantis Gagos, Andreas Petrolekas, Maria G. Roubelakis, Vasiliki Bitsika, Konstantinos Stravodimos, Kitty Pavlakis, Nicholas P. Anagnou, Jonathan Coleman, Antonia Vlahou
PROTEOMICS (2009) 9(2): 287-298
Sparse combinatorial inference with an application in cancer biology
Sach Mukherjee, Steven Pelech, Richard M. Neve, Wen-Lin Kuo, Safiyyah Ziyad, Paul T. Spellman, Joe W. Gray, and Terence P. Speed
Bioinformatics (2009) 25(2): 265-271
Proteome Patterns in Uremic Plasma
Naseeb U, Shafqat J, Jägerbrink T, Zarina S, Alvestrand A, Jörnvall H, Axelsson J.
Blood Purif (2008) 26(6): 561-568
Proteomic identification of biomarkers related to Helicobacter pylori-associated gastroduodenal disease: challenges and opportunities
Wu MS, Chow LP, Lin JT, Chiou SH.
J Gastroenterol Hepatol (2008) 23(11): 1657-61
Hepatocytes proteomic alteration and seroproteome analysis of HBV-transgenic mice
Chen Ding, Haiming Wei, Rui Sun, Jian Zhang, Zhigang Tian
PROTEOMICS (2009) 9(1): 87-105
Systematic comparison of the human saliva and plasma proteomes
Weihong Yan, Rolf Apweiler, Brian M. Balgley, Pinmanee Boontheung, Jonathan L. Bundy, Benjamin J. Cargile, Steve Cole, Xueping Fang, Mireya Gonzalez-Begne, Timothy J. Griffin, Fred Hagen, Shen Hu, Lawrence E. Wolinsky, Cheng S. Lee, Daniel Malamud, James E. Melvin, Rajasree Menon, Michael Mueller, Renli Qiao, Nelson L. Rhodus, Joel R. Sevinsky, David States, James L. Stephenson Jr., Shawn Than, John R. Yates III, Weixia Yu, Hongwei Xie, Yongming Xie, Gilbert S. Omenn, Joseph A. Loo, David T. Wong
PROTEOMICS - CLINICAL APPLICATIONS (2009) 3(1): 116-134
Erythropoietin protects the developing brain from hyperoxia-induced cell death and proteome changes
Kaindl AM, Sifringer M, Koppelstaetter A, Genz K, Loeber R, Boerner C, Stuwe J, Klose J, Felderhoff-Mueser U.
Ann Neurol (2008) 64(5): 523-534
A proteomic approach identified growth hormone dependent nutrition markers in children with idiopathic short stature
Hellgren G, Andersson B, Nierop AF, Dahlgren J, Hochberg Z, Albertsson-Wikland K.
Proteome Science (2008) 6(1): 35
Endometrial fluid is a specific and non-invasive biological sample for protein biomarker identification in endometriosis
Ametzazurra A, Matorras R, GarcÃa-Velasco JA, Prieto B, Simón L, MartÃnez A, Nagore D.
Hum Reprod Early Edition: published 18-Dec-2008
Serum biomarker discovery in renal cancer using 2-DE and prefractionation by immunodepletion and isoelectric focusing; increasing coverage or more of the same?
Naveen S. Vasudev, Roisean E. Ferguson, David A. Cairns, Anthea J. Stanley, Peter J. Selby, Rosamonde E. Banks
PROTEOMICS (2008) 8(23-24): 5074-5085
Identification of Temporal Differentially Expressed Protein Responses to Microcystin in Human Amniotic Epithelial Cells
Fu W, Yu Y, Xu L.
Chem Res Toxicol (2009) 22(1): 41-51
Update on the pathobiology of neuropathic pain
Ellen Niederberger, Hilmar Kuhlein, and Gerd Geisslinger
Expert Review of Proteomics (2008) 5(6): 799-818
Proteomic analysis in human fibroblasts by continuous exposure to extremely low-frequency electromagnetic fields
Seyyedi SS, Dadras MS, Tavirani MR, Mozdarani H, Toossi P, Zali AR.
Pak J Biol Sci (2007) 10(22): 4108-12
The proteome of the human breast cancer cell line MDA-MB-231: Analysis by LTQ-Orbitrap mass spectrometry
Vaïk Strande, Ludovic Canelle, Christophe Tastet, Odile Burlet-Schiltz, Bernard Monsarrat, Hubert Hondermarck
PROTEOMICS - CLINICAL APPLICATIONS (2009) 3(1): 41-50
Biomarkers for Parkison's disease: Tools to assess Parkinson's disease onset and progression
Marek K, Jennings D, Tamagnan G, Seibyl J.
Ann Neurol (2009) 64(S2): S111-S121
Iron Oxide Nanoparticle Assisted Purification and Mass Spectrometry Based Proteolytic Mapping of Intact CD4(+)T Cells from Human Blood
Mandal SM, Ghosh AK, Mandal M.
Prep Biochem Biotechnol (2009) 39(1): 20-31
Identification of biomarkers indicating cellular changes after treatment of neuronal cells with the C3 exoenzyme from Clostridium botulinum using the iTRAQ protocol and LC-MS/MS analysis
Muetzelburg MV, Hofmann F, Just I, Pich A.
J Chromatogr B Early Edition: published 9-Dec-2008
Application of MALDI/SELDI Mass Spectrometry to Cancer Biomarker Discovery and Validation
Ahmed, Farid E.
Current Proteomics (2008) 5(4): 224-252
Advances in prevention and diagnosis of hepatocellular carcinoma
Spangenberg HC, Thimme R, Blum HE.
Expert Rev Gastroenterol Hepatol (2008) 2(3): 425-33
Proteomic analysis of metastatic laryngeal squamous cell carcinoma
Goodyear PW, Boyd MT, Jenkins R, Hamlett J, Kitteringham N, Jones TM.
Clin Otolaryngol (2008) 33(6): 642
Proteomic analysis of cerebrospinal fluid from patients with idiopathic temporal lobe epilepsy
Xiao F, Chen D, Lu Y, Xiao Z, Guan LF, Yuan J, Wang L, Xi ZQ, Wang XF.
Brain Res Early Edition: published 11-Dec-2008
Lipoxin A4 counterregulates GM-CSF signaling in eosinophilic granulocytes
Starosta V, Pazdrak K, Boldogh I, Svider T, Kurosky A.
J Immunol (2008) 181(12): 8688-99
A block in the road to fertility: autoantibodies to heat-shock protein 90-beta in human ovarian autoimmunity
Pires ES, Khole VV.
Fertil Steril Early Edition: published 18-Nov-2008
Proteomic analyses of monocyte-derived macrophages infected with human immunodeficiency virus type 1 primary isolates from Hispanic women with and without cognitive impairment
Toro-Nieves D, Rodriguez Y, Plaud M, Ciborowski P, Duan F, Perez Laspiur J, Wojna V, Melendez L.
J Neurovirol Early Edition: published 29-Dec-2008
Proteomics of lung physiopathology
Ingrid Miller, Ivano Eberini, Elisabetta Gianazza
PROTEOMICS (2008) 8(23-24): 5053-5073
Identification of RKIP as a differentially tyrosine-phosphorylated protein in nasopharyngeal carcinoma and normal nasopharyngeal epithelial tissues by phosphoproteomic approach
Chen Y, Tang CE, Ouyang GL, Ruan L, Li MY, Zhang PF, Li C, Yi H, Peng F, Li JL, Chen ZC, Xiao ZQ.
Med Oncol Early Edition: published 19-Dec-2008
Apoptosis induced by methylene-blue-mediated photodynamic therapy in melanomas and the involvement of mitochondrial dysfunction revealed by proteomics
Chen Y, Zheng W, Li Y, Zhong J, Ji J, Shen P.
Cancer Sci (2008) 99(10): 2019-2027
Proteomic biomarkers for the diagnosis and risk stratification of polycystic ovary syndrome: a systematic review
Atiomo W, Khalid S, Parameshweran S, Houda M, Layfield R.
BJOG (2009) 116(2): 137-43
Profiling of transcripts and proteins modulated by K-ras oncogene in the lung tissues of K-ras transgenic mice by omics approaches
Lee S, Kang J, Cho M, Seo E, Choi H, Kim E, Kim J, Kim H, Kang GY, Kim KP, Park YH, Yu DY, Yum YN, Park SN, Yoon DY.
Int J Oncol (2009) 34(1): 161-72
Proteomics technologies in endometriosis
Simone Ferrero, David John Gillott, Valentino Remorgida, Nicola Ragni, Pier Luigi Venturini, and Jurgis Gedis Grudzinskas
Expert Review of Proteomics (2008) 5(5): 705-714
Dynamic heterogeneity of proteomic expression in human cancer cells does not affect Cdk1/Cdk4 co-expression
Warenius H, Howarth A, Seabra L, Kyritsi L, Dormer R, Anandappa S, Thomas C.
J Exp Ther Oncol (2008) 7(3): 237-54
Clinical proteomics in breast cancer: a review
Gast MC, Schellens JH, Beijnen JH.
Breast Cancer Res Treat Early Edition: published 11-Dec-2008
Proteomic profiling of amniotic fluid in preterm labor using two-dimensional liquid separation and mass spectrometry
Bujold E, Romero R, Kusanovic JP, Erez O, Gotsch F, Chaiworapongsa T, Gomez R, Espinoza J, Vaisbuch E, Mee Kim Y, Edwin S, Pisano M, Allen B, Podust VN, Dalmasso EA, Rutherford J, Rogers W, Moser A, Yoon BH, Barder T.
J Matern Fetal Neonatal Med (2008) 21(10): 697-713
Differential in-gel electrophoresis (DIGE) analysis of human bone marrow osteoprogenitor cell contact guidance
Kantawong F, Burchmore R, Wilkinson CD, Oreffo RO, Dalby MJ.
Acta Biomater Early Edition: published 27-Nov-2008
Quantitative Proteomic Analysis of Formalin Fixed Paraffin Embedded Oral HPV Lesions from HIV Patients
Jain MR, Liu T, Hu J, Darfler M, Fitzhugh V, Rinaggio J, Li H.
Open Proteomics J (2008) 1: 40-45
Implication of GM-CSF induced neutrophil gelatinase-associated lipocalin in pathogenesis of rheumatoid arthritis revealed by proteome analysis
Katano M, Okamoto K, Arito M, Kawakami Y, Kurokawa MS, Suematsu N, Shimada S, Nakamura H, Xiang Y, Masuko K, Nishioka K, Yudoh K, Kato T.
Arthritis Res Ther (2009) 11(1): R3
Congenital disorder of glycosylation Ia: New differentially expressed proteins identified by 2-DE
Richard E, Vega AI, Pérez B, Roche C, Velázquez R, Ugarte M, Pérez-Cerdá C.
Biochem Biophys Res Commun (2009) 379(2): 267-71
Glycoproteomic analysis of plasma from patients with atopic dermatitis: CD5L and ApoE as potential biomarkers
Kim WK, Hwang HR, Kim do H, Lee PY, In YJ, Ryu HY, Park SG, Bae KH, Lee SC.
Exp Mol Med (2008) 40(6): 677-85
Urine Proteomics to Detect Biomarkers for Chronic Allograft Dysfunction
Quintana LF, Solé-Gonzalez A, Kalko SG, Bañon-Maneus E, Solé M, Diekmann F, Gutierrez-Dalmau A, Abian J, Campistol JM.
J Am Soc Nephrol Early Edition: published 3-Dec-2008
Identification of Novel Metabolic Proteins Released by Insulin Signaling of the Rat Hypothalmus Using Liquid Chromatography-Mass Spectrometry (LC-MS)
Chin C.
J Korean Neurosurg Soc (2007) 42(6): 470-4
Large-Scale Proteomics and Phosphoproteomics of Urinary Exosomes
Gonzales PA, Pisitkun T, Hoffert JD, Tchapyjnikov D, Star RA, Kleta R, Wang NS, Knepper MA.
J Am Soc Nephrol Early Edition: published 3-Dec-2008
Growth and molecular interactions of the anti-EGFR antibody Cetuximab and the DNA cross-linking agent cisplatin in gefitinib-resistant MDA-MB-468 cells: New prospects in the treatment of triple-negative/basal-like breast cancer
Oliveras-Ferraros C, Vazquez-Martin A, López-Bonet E, MartÃn-Castillo B, Del Barco S, Brunet J, Menendez JA.
Int J Oncol (2008) 33(6): 1165-1176
Blood Protein Signature for the Early Diagnosis of Alzheimer Disease
Britschgi M, Wyss-Coray T.
Arch Neurol Early Edition: published 8-Dec-2008
A Structural Analysis of the Mode of Action of ORF1 in Pseudaminobacter salicylatoxidans: Prediction of its Role in the Global Sulfur Oxidation Operon (sox)
Bagchi, Angshuman
Current Proteomics (2008) 5(3): 176-180
Sample size determination in clinical proteomic profiling experiments using mass spectrometry for class comparison
David A. Cairns, Jennifer H. Barrett, Lucinda J. Billingham, Anthea J. Stanley, George Xinarianos, John K. Field, Phillip J. Johnson, Peter J. Selby, Rosamonde E. Banks
PROTEOMICS (2009) 9(1): 74-86
Antioxidant enzyme dysfunction in monocytes and CSF of Hispanic women with HIV-associated cognitive impairment
Velázquez I, Plaud M, Wojna V, Skolasky R, Laspiur JP, Meléndez LM.
J Neuroimmunol (2009) 206(1-2): 106-11
Cellular vimentin content regulates the protein level of hepatitis C virus core protein and the hepatitis C virus production in cultured cells
Nitahara-Kasahara Y, Fukasawa M, Shinkai-Ouchi F, Sato S, Suzuki T, Murakami K, Wakita T, Hanada K, Miyamura T, Nishijima M.
Virology (2009) 383(2): 319-27
Omics-based profiling of carcinoma of the breast and matched regional lymph node metastasis
Jian Li, Pavel Gromov, Irina Gromova, José M. Moreira, Vera Timmermans-Wielenga, Fritz Rank, Kai Wang, Shengting Li, Heng Li, Carsten Wiuf, Huanming Yang, Xiuqing Zhang, Lars Bolund, Julio E. Celis
PROTEOMICS (2008) 8(23-24): 5038-5052
Quantitative proteome analysis of HCC cell lines with different metastatic potentials by SILAC
Ning Chen, Wei Sun, Xinyu Deng, Yunwei Hao, Xilin Chen, Baocai Xing, Wei Jia, Jie Ma, Handong Wei, Yunping Zhu, Xiaohong Qian, Ying Jiang, Fuchu He
PROTEOMICS (2008) 8(23-24): 5108-5118
Three new potential ovarian cancer biomarkers detected in human urine with equalizer bead technology
Petri AL, Simonsen AH, Yip TT, Hogdall E, Fung ET, Lundvall L, Hogdall C.
Acta Obstet Gynecol Scand (2009) 88(1): 18-26
Immunohistochemical and proteomic profile of melanotic medulloblastoma
Zanini C, Mandili G, Pulerà F, Morra I, Peretta P, Turrini F, Forni M.
Pediatr Blood Cancer Early Edition: published 5-Dec-2008
Proteomics in rheumatology
Kelly Tilleman and Dieter Deforce
Expert Review of Proteomics (2008) 5(6): 755-759
Anti-Cancer Effect of Betulin on a Human Lung Cancer Cell Line: A Pharmacoproteomic Approach Using 2 D SDS PAGE Coupled with Nano-HPLC Tandem Mass Spectrometry
Pyo JS, Roh SH, Kim DK, Lee JG, Lee YY, Hong SS, Kwon SW, Park JH.
Planta Med Early Edition: published 12-Dec-2008
Mouse Model of Treponema denticola Infection, Immune Response, and Alveolar Bone Resorption
Lee SF, Andrian E, Rowland E, Marquez IC.
Infect Immun (2009) 77(2): 694-8
Evaluation of urinary biomarkers for coronary artery disease, diabetes, and diabetic kidney disease
Snell-Bergeon JK, Maahs DM, Ogden LG, Kinney GL, Hokanson JE, Schiffer E, Rewers M, Mischak H.
Diabetes Technol Ther (2009) 11(1): 1-9
Large-scale differential proteome analysis in Plasmodium falciparum under drug treatment
Prieto JH, Koncarevic S, Park SK, Yates J 3rd, Becker K.
PLoS ONE (2008) 3(12): e4098
Upregulation of CRABP1 in human neuroblastoma cells overproducing the Alzheimer-typical Abeta42 reduces their differentiation potential
Uhrig M, Brechlin P, Jahn O, Knyazev Y, Weninger A, Busia L, Honarnejad K, Otto M, Hartmann T.
BMC Med (2008) 6(1): 38
Alterations in oligodendrocyte proteins, calcium homeostasis and new potential markers in schizophrenia anterior temporal lobe are revealed by shotgun proteome analysis
Martins-de-Souza D, Gattaz WF, Schmitt A, Rewerts C, Marangoni S, Novello JC, Maccarrone G, Turck CW, Dias-Neto E.
J Neural Transm Early Edition: published 26-Nov-2008
Proteomic analysis of dorsolateral prefrontal cortex indicates the involvement of cytoskeleton, oligodendrocyte, energy metabolism and new potential markers in schizophrenia
Martins-de-Souza D, Gattaz WF, Schmitt A, Maccarrone G, Hunyadi-Gulyás E, Eberlin MN, Souza GH, Marangoni S, Novello JC, Turck CW, Dias-Neto E.
J Psychiatr Res Early Edition: published 23-Dec-2008
Disease State, Age, Sex, and Post-Mortem Time-Dependent Expression of Proteins in AD vs. Control Frontal Cortex Brain Samples
Müller T, Jung K, Ullrich A, Schrötter A, Meyer HE, Stephan C, Egensperger R, Marcus K.
Curr Alzheimer Res (2008) 5(6): 562-71
Proteomic Analysis of Pancreatic Ductal Adenocarcinoma Compared with Normal Adjacent Pancreatic Tissue and Pancreatic Benign Cystadenoma
Cui Y, Tian M, Zong M, Teng M, Chen Y, Lu J, Jiang J, Liu X, Han J.
Pancreatology (2008) 9(1-2): 89-98
Recent advances in atherosclerosis-based proteomics: new biomarkers and a future perspective
Gloria Alvarez-Llamas, Fernando de la Cuesta, Maria Eugenia G Barderas, Veronica Darde, Luis R Padial, and Fernando Vivanco
Expert Review of Proteomics (2008) 5(5): 679-691
Proteomic expression analysis and comparison of protein and mRNA expression profiles in human malignant gliomas
Oscar Persson, Ulrika Brynnel, Fredrik Levander, Bengt Widegren, Leif G. Salford, Morten Krogh
PROTEOMICS - CLINICAL APPLICATIONS (2009) 3(1): 83-94
Proteomic and metabolomic analysis of cardioprotection: Interplay between protein kinase C epsilon and delta in regulating glucose metabolism of murine hearts
Mayr M, Liem D, Zhang J, Li X, Avliyakulov NK, Yang JI, Young G, Vondriska TM, Ladroue C, Madhu B, Griffiths JR, Gomes A, Xu Q, Ping P.
J Mol Cell Cardiol (2009) 46(2): 268-77
Integrative microRNA and proteomic approaches identify novel osteoarthritis genes and their collaborative metabolic and inflammatory networks
Iliopoulos D, Malizos KN, Oikonomou P, Tsezou A.
PLoS ONE (2008) 3(11): e3740
The use of gene array technology and proteomics in the search of new targets of diseases for therapeutics
Ferrer-Alcón M, Arteta D, Guerrero MJ, Fernandez-Orth D, Simón L, Martinez A.
Toxicol Lett Early Edition: published 28-Oct-2008
Proteomic analysis of breast cancer molecular subtypes and biomarkers of response to targeted kinase inhibitors using reverse-phase protein microarrays
Boyd ZS, Wu QJ, O'Brien C, Spoerke J, Savage H, Fielder PJ, Amler L, Yan Y, Lackner MR.
Mol Cancer Ther (2008) 7(12): 3695-706
Proteomic analysis of mitochondrial proteins of basal and lipolytically (isoproterenol and TNF-alpha)-stimulated adipocytes
Cho SY, Park PJ, Shin ES, Lee JH, Chang HK, Lee TR.
J Cell Biochem (2009) 106(2): 257-66
Current proteomic analysis and post-translational modifications of biomarkers in human lung cancer materials
Sinchaikul S, Hongsachart P, Sriyam S, Tantipaiboonwong P, Phutrakul S, Chen ST.
Chang Gung Med J (2008) 31(5): 417-30
Proteomic analysis of homocysteine induced proliferation of cultured neonatal rat vascular smooth muscle cells
Liu X, Shen J, Zhan R, Wang X, Wang X, Zhang Z, Leng X, Yang Z, Qian L.
Biochim Biophys Acta (2009) 1794(2): 177-84
Proteomic analysis reveals protein changes within layer 2 of the insular cortex in schizophrenia
Kyla Pennington, Patrick Dicker, Michael J. Dunn, David R. Cotter
PROTEOMICS (2008) 8(23-24): 5097-5107
The HDL proteome: a marker - and perhaps mediator - of coronary artery disease
Heinecke JW.
J Lipid Res Early Edition: published 5-Dec-2008
Dynamic Proteomics of Individual Cancer Cells in Response to a Drug
Cohen AA, Geva-Zatorsky N, Eden E, Frenkel-Morgenstern M, Issaeva I, Sigal A, Milo R, Cohen-Saidon C, Liron Y, Kam Z, Cohen L, Danon T, Perzov N, Alon U.
Science (2008) 322(5907): 1511-6
Identification and quantification of proteins differentially secreted by a pair of normal and malignant breast-cancer cell lines
Xiquan Liang, Jarkko Huuskonen, Mahbod Hajivandi, Raul Manzanedo, Paul Predki, Joseph R. Amshey, R. Marshall Pope
PROTEOMICS (2009) 9(1): 182-193
Plasma protein profiles in early asthmatic responses to inhalation allergen challenge
Rhim T, Choi YS, Nam BY, Uh ST, Park JS, Kim YH, Paik YK, Park CS.
Allergy (2009) 64(1): 47-54
A peptide-centric approach to breast cancer biomarker discovery utilizing label-free multiple reaction monitoring mass spectrometry
Gergana Metodieva, Christina Greenwood, Louise Alldridge, Paul Sauven, Metodi Metodiev
PROTEOMICS - CLINICAL APPLICATIONS (2009) 3(1): 78-82
Proteomic analysis of tumor necrosis factor-alpha resistant human breast cancer cells reveals a MEK5/Erk5-mediated epithelial-mesenchymal transition phenotype
Zhou C, Nitschke AM, Xiong W, Zhang Q, Tang Y, Bloch M, Elliott S, Zhu Y, Bazzone L, Yu D, Weldon CB, Schiff R, McLachlan JA, Beckman BS, Wiese TE, Nephew KP, Shan B, Burow ME, Wang G.
Breast Cancer Res (2008) 10(6): R105
Protein expression profiling in esophageal adenocarcinoma patients indicates association of heat-shock protein 27 expression and chemotherapy response
Langer R, Ott K, Specht K, Becker K, Lordick F, Burian M, Herrmann K, Schrattenholz A, Cahill MA, Schwaiger M, Hofler H, Wester HJ.
Clin Cancer Res (2008) 14(24): 8279-87
Proteomics-based diagnosis of chronic obstructive pulmonary disease: the hunt for new markers
Begona Casado, Paolo Iadarola, Maurizio Luisetti, and Martin Kussmann
Expert Review of Proteomics (2008) 5(5): 693-704
Nephrotic syndrome: new concepts in the pathophysiology of sodium retention
Zacchia M, Trepiccione F, Morelli F, Pani A, Capasso G.
J Nephrol (2008) 21(6): 836-42
Comparative proteome profiling of MCF10A and 184A1 human breast epithelial cells emphasized involvement of CDK4 and cyclin D3 in cell proliferation
Nimesh Bhaskaran, Kah Wai Lin, Aude Gautier, Hanna Woksepp, Ulf Hellman, Serhiy Souchelnytskyi
PROTEOMICS - CLINICAL APPLICATIONS (2009) 3(1): 68-77
Proteomic identification of altered apolipoprotein patterns in pulmonary hypertension and vasculopathy of sickle cell disease
Yuditskaya S, Tumblin A, Hoehn GT, Wang G, Drake SK, Xu X, Ying S, Chi AH, Remaley AT, Shen RF, Munson PJ, Suffredini AF, Kato GJ.
Blood Early Edition: published 20-Nov-2008
Co-localization of Increased Transforming Growth Factor Beta Induced Protein (TGFBIp) and Clusterin Expression in Guttae of Fuchs Endothelial Corneal Dystrophy Patients
Jurkunas UV, Bitar MS, Rawe IM.
Invest Ophthalmol Vis Sci Early Edition: published 14-Nov-2008
GATING DEFICITS IN ISOLATION-REARED RATS ARE CORRELATED WITH ALTERATIONS IN PROTEIN EXPRESSION IN NUCLEUS ACCUMBENS
Roncada P, Bortolato M, Frau R, Saba P, Flore G, Soggiu A, Pisanu S, Amoresano A, Carpentieri A, Devoto P.
J Neurochem Early Edition: published 28-Nov-2008
Network analyses of differentially expressed proteins in amniotic fluid supernatant associated with abnormal human karyotypes
Wang TH, Chao AS, Chen JK, Chao A, Chang YL, Cheng PJ, Chang SD, Wang HS.
Fertil Steril Early Edition: published 22-Dec-2008
Proteomic identification of tumor-associated protein in ovarian serous cystadenocarinoma
Li XQ, Zhang SL, Cai Z, Zhou Y, Ye TM, Chiu JF.
Cancer Lett (2009) 275(1): 109-16
Peroxiredoxin-6 Protects Against Mitochondrial Dysfunction and Liver Injury During Ischemia/Reperfusion in Mice
Eismann T, Huber N, Shin T, Kuboki S, Galloway E, Wyder M, Edwards MJ, Greis KD, Shertzer HG, Fisher AB, Lentsch AB.
Am J Physiol Gastrointest Liver Physiol (2009) 296(2): G266-74
Proteomic identification of differentially expressed proteins in aortic wall of patients with ruptured and nonruptured abdominal aortic aneurysms
Urbonavicius S, Lindholt JS, Vorum H, Urbonaviciene G, Henneberg EW, Honoré B.
J Vasc Surg Early Edition: published 26-Nov-2008
Immunoglobulin 1 (IgG1) Fc-glycosylation profiling of anti-citrullinated peptide antibodies from human serum
H. Ulrich Scherer, Jun Wang, René E. M. Toes, Diane van der Woude, Carolien A. M. Koeleman, Arjen R. de Boer, Tom W. J. Huizinga, André M. Deelder, Manfred Wuhrer
PROTEOMICS - CLINICAL APPLICATIONS (2009) 3(1): 106-115
Stem cell markers: Insights from membrane proteomics?
Sung-Min Ahn, Robert J. A. Goode, Richard J. Simpson
PROTEOMICS (2008) 8(23-24): 4946-4957
Proteomics- and metabolomics-based neonatal diagnostics in assessing and managing the critically ill neonate
Spitzer AR, Chace D.
Clin Perinatol (2008) 35(4): 695-716
SELDI-TOF serum proteomics and breast cancer: which perspective?
Vito Michele Garrisi, Ines Abbate, Michele Quaranta, Anita Mangia,
Expert Review of Proteomics (2008) 5(6): 779-785
Splice variants of neuronal nitric oxide synthase are present in the rat kidney
Smith C, Merchant M, Fekete A, Nyugen HL, Oh P, Tain YL, Klein JB, Baylis C.
Nephrol Dial Transplant Early Edition: published 10-Dec-2008
Comparative proteome analysis of three mouse lung adenocarcinoma CMT cell lines with different metastatic potential by two-dimensional gel electrophoresis and mass spectrometry
Kelan Zhang, Krzysztof Wrzesinski, J. Fey Stephen, Peter Mose Larsen, Xumin Zhang, Peter Roepstorff
PROTEOMICS (2008) 8(23-24): 4932-4945
Electrophoresis and liquid chromatography/tandem mass spectrometry in disease biomarker discovery
Issaq HJ, Blonder J.
J Chromatogr B Early Edition: published 24-Dec-2008
Proteomic Investigation in A549 Lung Cell Line Stably Infected by HPV16E6/E7 Oncogenes
Ciotti M, Marzano V, Giuliani L, Nuccetelli M, D'Aguanno S, Azzimonti B, Bernardin S, Perno CF, Urbani A, Favalli C, Federici G.
Respiration Early Edition: published 20-Nov-2008
Proteomic Profiling in Early Venous Stenosis Formation in a Porcine Model of Hemodialysis Graft
Misra S, Fu AA, Puggioni A, Glockner JF, McKusick MA, Bjarnason H, Mukhopadhyay D.
J Vasc Interv Radiol (2009) 20(2): 241-51
Quantitative proteomic analysis of follicular lymphoma cells in response to rituximab
Everton KL, Abbott DR, Crockett DK, Elenitoba-Johnson KS, Lim MS.
J Chromatogr B Early Edition: published 28-Oct-2008
Proteome alteration of U251 human astrocytoma cell after inhibiting retinoic acid synthesis
Zhang M, Wan C, Ji B, Zhang Z, Zhu H, Tian N, La Y, Huang K, Jiang L, He G, Gao L, Zhao X, Shi Y, Huang G, Feng G, He L.
Mol Cell Biochem Early Edition: published 17-Dec-2008
Proteomics and cancer epidemiology
Verma M.
Methods Mol Biol (2009) 471: 197-215
A novel phosphoprotein analysis scheme for assessing changes in premalignant and malignant breast cell lines using 2-D liquid separations, protein microarrays, and tandem mass spectrometry
Tasneem H. Patwa, Yanfei Wang, Fred R. Miller, Steve Goodison, Subramaniam Pennathur, Timothy J. Barder, David M. Lubman
PROTEOMICS - CLINICAL APPLICATIONS (2009) 3(1): 51-66
Identification of metastasis associated proteins in human lung squamous carcinoma using two-dimensional difference gel electrophoresis and laser capture microdissection
Yao H, Zhang Z, Xiao Z, Chen Y, Li C, Zhang P, Li M, Liu Y, Guan Y, Yu Y, Chen Z.
Lung Cancer Early Edition: published 4-Dec-2008
Altered expression of HSPA5, HSPA8 and PARK7 in spinocerebellar ataxia type 17 identified by 2-dimensional fluorescence difference in gel electrophoresis
Lee LC, Chen CM, Chen FL, Lin PY, Hsiao YC, Wang PR, Su MT, Hsieh-Li HM, Hwang JC, Wu CH, Lee GC, Singh S, Lin Y, Hsieh SY, Lee-Chen GJ, Lin JY.
Clin Chim Acta (2009) 400(1-2): 56-62
An integrated proteomics approach for studying the molecular pathogenesis of Dupuytren's disease
Kraljevic Pavelic S, Sedic M, Hock K, Vucinic S, Jurisic D, Gehrig P, Scott M, Schlapbach R, Cacev T, Kapitanovic S, Pavelic K.
J Pathol Early Edition: published 4-Nov-2008
Identification of proteins that modify cataract of mouse eye lens
Wolfgang Hoehenwarter, Yajun Tang, Renate Ackermann, Klaus-Peter Pleissner, Monika Schmid, Robert Stein, Ursula Zimny-Arndt, Nalin M. Kumar, Peter R. Jungblut
PROTEOMICS (2008) 8(23-24): 5011-5024
Protein profiling in pancreatic juice for detection of intraductal papillary mucinous neoplasm of the pancreas
Shirai Y, Sogawa K, Yamaguchi T, Sudo K, Nakagawa A, Sakai Y, Ishihara T, Sunaga M, Nezu M, Tomonaga T, Miyazaki M, Saisho H, Nomura F.
Hepatogastroenterology (2008) 55(86-87): 1824-9
Identification of novel alternative splice isoforms of circulating proteins in a mouse model of human pancreatic cancer
Menon R, Zhang Q, Zhang Y, Fermin D, Bardeesy N, DePinho RA, Lu C, Hanash SM, Omenn GS, States DJ.
Cancer Res (2009) 69(1): 300-9
Extensive fractionation and identification of proteins within nasal lavage fluids from allergic rhinitis and asthmatic chronic rhinosinusitis patients
Benson LM, Mason CJ, Friedman O, Kita H, Bergen Iii HR, Plager DA.
J Sep Sci (2009) 32(1): 44-56
Urine proteomic profiling to identify biomarkers of steroid resistance in pediatric nephrotic syndrome
Avram Z Traum
Expert Review of Proteomics (2008) 5(5): 715-719
Proteomic analysis of human plasma and blood cells in nutritional studies: development of biomarkers to aid disease prevention
Baukje de Roos
Expert Review of Proteomics (2008) 5(6): 819-826
Breast Cancer Diagnosis from Proteomic Mass Spectrometry Data: A Comparative Evaluation
Hand DJ.
Stat Appl Genet Mol Biol (2008) 7(2): Article15
Comparative proteomics analysis of cytokeratin and involucrin expression in lesions from patients with systemic lupus erythematosus
Fang S, Zeng F, Guo Q.
Acta Biochim Biophys Sin (Shanghai) (2008) 40(12): 989-95
Improved Autograft Survival of MSCs by PAI-1 Inhibition
Copland IB, Lord-Dufour S, Cuerquis J, Legault-Coutu D, Annabi B, Wang E, Galipeau J.
Stem Cells Early Edition: published 20-Nov-2008
Proteomics Studies After Hematopoietic Stem Cell Transplantation
Weissinger EM, Zürbig P, Ganser A.
Methods Mol Biol (2009) 506: 437-452
Dissecting the human plasma proteome and inflammatory response biomarkers
Sudipto Saha, Scott H. Harrison, Jake Yue Chen
PROTEOMICS (2009) 9(2): 470-484
Proteomic profiling of human plasma exosomes identifies PPARgamma as an exosome-associated protein
Looze C, Yui D, Leung L, Ingham M, Kaler M, Yao X, Wu WW, Shen RF, Daniels MP, Levine SJ.
Biochem Biophys Res Commun (2009) 378(3): 433-8
Proteomics-based approach to elucidate the mechanism of antitumor effect of curcumin in cervical cancer
Madden K, Flowers L, Salani R, Horowitz I, Logan S, Kowalski K, Xie J, Mohammed SI.
Prostaglandins Leukot Essent Fatty Acids Early Edition: published 4-Dec-2008
A qualitative proteome investigation of the sediment portion of human urine: Implications in the biomarker discovery process
Diane Mataija-Botelho, Patrick Murphy, Devanand M. Pinto, Dawn L. MacLellan, Chantale Langlois, Alan A. Doucette
PROTEOMICS - CLINICAL APPLICATIONS (2009) 3(1): 95-105
A proteome reference map of Trichomonas vaginalis
Huang KY, Chien KY, Lin YC, Hsu WM, Fong IK, Huang PJ, Yueh YM, Gan RR, Tang P.
Parasitol Res Early Edition: published 5-Dec-2008
Proteomics of brain extracellular fluid (ECF) and cerebrospinal fluid (CSF)
Maurer MH.
Mass Spectrom Rev Early Edition: published 30-Dec-2008
Defence reactions in the apoplastic proteome of oilseed rape (Brassica napus var. napus) attenuate Verticillium longisporum growth but not disease symptoms
Floerl S, Druebert C, Majcherczyk A, Karlovsky P, Kues U, Polle A.
BMC Plant Biol (2008) 8(1): 129
Quantitative Proteomic Analysis of Bean Plants Infected by a Virulent and
Avirulent Obligate Rust Fungus
Mol Cell Proteomics (2009) 8(1): 19-31
Human protein factory for converting the transcriptome into an in vitro-expressed proteome,
Goshima N, Kawamura Y, Fukumoto A, Miura A, Honma R, Satoh R, Wakamatsu A, Yamamoto J, Kimura K, Nishikawa T, Andoh T, Iida Y, Ishikawa K, Ito E, Kagawa N, Kaminaga C, Kanehori K, Kawakami B, Kenmochi K, Kimura R, Kobayashi M, Kuroita T, Kuwayama H, Maruyama Y, Matsuo K, Minami K, Mitsubori M, Mori M, Morishita R, Murase A, Nishikawa A, Nishikawa S, Okamoto T, Sakagami N, Sakamoto Y, Sasaki Y, Seki T, Sono S, Sugiyama A, Sumiya T, Takayama T, Takayama Y, Takeda H, Togashi T, Yahata K, Yamada H, Yanagisawa Y, Endo Y, Imamoto F, Kisu Y, Tanaka S, Isogai T, Imai J, Watanabe S, Nomura N.
Nat Methods (2008) 5(12): 1011-7
Comparative proteomic analysis of mesenchymal stem cells derived from human bone marrow, umbilical cord, and placenta: Implication in the migration
Guo Li, Xiao-ai Zhang, Hua Wang, Xin Wang, Chun-ling Meng, Chu-yan Chan, David Tai Wai Yew, Kam Sze Tsang, Karen Li, Sau-na Tsai, Sai-ming Ngai, Zhong Chao Han, Marie Chia-mi Lin, Ming-liang He, Hsiang-fu Kung
PROTEOMICS (2009) 9(1): 20-30
Combinatorial peptide ligand libraries and plant proteomics: A winning strategy at a price
Boschetti E, Bindschedler LV, Tang C, Fasoli E, Righetti PG.
J Chromatogr A Early Edition: published 10-Dec-2008
Protein Expression Profiling During Chick Retinal Maturation: A Proteomics-based approach
Finnegan S, Robson JL, Wylie M, Healy A, Stitt AW, Curry WJ.
Proteome Science (2008) 6(1): 34
Functional Proteomics of Arabidopsis thaliana Guard Cells Uncovers New Stomatal Signaling Pathways
Zhao Z, Zhang W, Stanley BA, Assmann SM.
Plant Cell Early Edition: published 29-Dec-2008
The response of Porphyromonas gingivalis to heme limitation in continuous culture
Dashper SG, Ang CS,