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SPS' DigestIssue 60, 29-Apr-2009 |
CHPVDB - a sequence annotation database for Chandipura Virus
Dikhit MR, Rana SP, Das P, Sahoo GC.
Bioinformation (2009) 3(7): 299-302
An introduction to artificial neural networks in bioinformatics--application to complex microarray and mass spectrometry datasets in cancer studies
Lee J. Lancashire, Christophe Lemetre, and Graham R. Ball
Brief Bioinform (2009) 10(3): 315-329
A roadmap of clustering algorithms: finding a match for a biomedical application
Bill Andreopoulos, Aijun An, Xiaogang Wang, and Michael Schroeder
Brief Bioinform (2009) 10(3): 297-314
Database searching and accounting of multiplexed precursor and product ion spectra from the data independent analysis of simple and complex peptide mixtures
Guo-Zhong Li, Johannes P. C. Vissers, Jeffrey C. Silva, Dan Golick, Marc V. Gorenstein, Scott J. Geromanos
PROTEOMICS (2009) 9(6): 1696-1719
A platform to standardize, store, and visualize proteomics experimental data
Zheng G, Li H, Wang C, Sheng Q, Fan H, Yang S, Liu B, Dai J, Zeng R, Xie L.
Acta Biochim Biophys Sin (Shanghai) (2009) 41(4): 273-9
PAnnBuilder: an R package for assembling proteomic annotation data
Hong Li, Guohui Ding, Lu Xie, and Yixue Li
Bioinformatics (2009) 25(8): 1094-1095
Using the augmented Chou's pseudo amino acid composition for predicting protein submitochondria locations based on auto covariance approach
Zeng YH, Guo YZ, Xiao RQ, Yang L, Yu LZ, Li ML.
J Theor Biol Early Edition: published 30-Mar-2009
A Simulated MS/MS Library for Spectrum-to-spectrum Searching in Large Scale
Identification of Proteins
Mol Cell Proteomics (2009) 8(4): 857-869
A kernel-based integration of genome-wide data for clinical decision support
Daemen A, Gevaert O, Ojeda F, Debucquoy A, Suykens JA, Sempoux C, Machiels JP, Haustermans K, De Moor B.
Genome Med (2009) 1(4): 39
Progress and challenges in predicting protein-protein interaction sites
Iakes Ezkurdia, Lisa Bartoli, Piero Fariselli, Rita Casadio, Alfonso Valencia, and Michael L. Tress
Brief Bioinform (2009) 10(3): 233-246
Amino Acid Metabolic Origin as an Evolutionary Influence on Protein Sequence in Yeast
de Bivort BL, Perlstein EO, Kunes S, Schreiber SL.
J Mol Evol Early Edition: published 9-Apr-2009
SIMPRO: simple protein homology detection method by using indirect signals
Inkyung Jung and Dongsup Kim
Bioinformatics (2009) 25(6): 729-735
Comparative analysis indicates that alternative splicing in plants has a limited role in functional expansion of the proteome
Severing EI, van Dijk AD, Stiekema WJ, van Ham RC.
BMC Genomics (2009) 10(1): 154
MassMatrix: A database search program for rapid characterization of proteins and peptides from tandem mass spectrometry data
Hua Xu, Michael A. Freitas
PROTEOMICS (2009) 9(6): 1548-1555
GelBandFitter - A computer program for analysis of closely spaced electrophoretic and immunoblotted bands
Mihail I. Mitov, Marion L. Greaser, Kenneth S. Campbell
ELECTROPHORESIS (2009) 30(5): 848-851
Bayesian Nonparametric Model for the Validation of Peptide Identification
in Shotgun Proteomics
Mol Cell Proteomics (2009) 8(3): 547-557
Supervised feature selection in mass spectrometry-based proteomic profiling by blockwise boosting
Jan Gertheiss and Gerhard Tutz
Bioinformatics (2009) 25(8): 1076-1077
Modeling the separation of macromolecules: A review of current computer simulation methods
Gary W. Slater, Christian Holm, Mykyta V. Chubynsky, Hendrick W. de Haan, Antoine Dub, Kai Grass, Owen A. Hickey, Christine Kingsburry, David Sean, Tyler N. Shendruk, Lixin Zhan
ELECTROPHORESIS (2009) 30(5): 792-818
Benchmarking currently available SELDI-TOF MS preprocessing techniques
Vincent A. Emanuele II, Brian M. Gurbaxani
PROTEOMICS (2009) 9(7): 1754-1762
Construction of A Multiple Myeloma Diagnostic Model by Magnetic Bead-Based MALDI-TOF Mass Spectrometry of Serum and Pattern Recognition Software
Wang QT, Li YZ, Liang YF, Hu CJ, Zhai YH, Zhao GF, Zhang J, Li N, Ni AP, Chen WM, Xu Y.
Anat Rec (Hoboken) (2009) 292(4): 604-610
Statistical Quality Assessment and Outlier Detection for Liquid Chromatography-Mass Spectrometry Experiments
Schulz-Trieglaff O, Machtejevas E, Reinert K, Schlueter H, Thiemann J, Unger K.
BioData Min (2009) 2(1): 4
Two variable semi-empirical and artificial neural-network-based modeling of peptide mobilities in CZE: The effect of temperature and organic modifier concentration
Stefan Mittermayr, Tibor Chovan, Andrs Guttman
ELECTROPHORESIS (2009) 30(5): 890-896
Analysis of Cell Surface Proteome Changes via Label-free, Quantitative Mass
Spectrometry
Mol Cell Proteomics (2009) 8(4): 624-638
A survey of available tools and web servers for analysis of protein-protein interactions and interfaces
Nurcan Tuncbag, Gozde Kar, Ozlem Keskin, Attila Gursoy, and Ruth Nussinov
Brief Bioinform (2009) 10(3): 217-232
Automated molecular formula determination by tandem mass spectrometry (MS/MS)
Jarussophon S, Acoca S, Gao JM, Deprez C, Kiyota T, Draghici C, Purisima E, Konishi Y.
Analyst (2009) 134(4): 690-700
PROTEOMER: A workflow-optimized laboratory information management system for 2-D electrophoresis-centered proteomics
Grit Nebrich, Marion Herrmann, Daniela Hartl, Madeleine Diedrich, Thomas Kreitler, Christoph Wierling, Joachim Klose, Patrick Giavalisco, Claus Zabel, Lei Mao
PROTEOMICS (2009) 9(7): 1795-1808
MRMaid, the Web-based Tool for Designing Multiple Reaction Monitoring (MRM)
Transitions
Mol Cell Proteomics (2009) 8(4): 696-705
MiSearch adaptive pubMed search tool
David J. States, Alex S. Ade, Zachary C. Wright, Aaron V. Bookvich, and Brian D. Athey
Bioinformatics (2009) 25(7): 974-976
Characterization of Domain-Peptide Interaction Interface: A Generic
Structure-based Model to Decipher the Binding Specificity of SH3 Domains
Mol Cell Proteomics (2009) 8(4): 639-649
MS-specific noise model reveals the potential of iTRAQ in quantitative proteomics
C. Hundertmark, R. Fischer, T. Reinl, S. May, F. Klawonn, and L. Jansch
Bioinformatics (2009) 25(8): 1004-1011
A hierarchical MS2/MS3 database search algorithm for automated analysis of phosphopeptide tandem mass spectra
Hua Xu, Liwen Wang, Larry Sallans, Michael A. Freitas
PROTEOMICS (2009) 9(7): 1763-1770
High-throughput proteomics detection of novel splice isoforms in human platelets
Power KA, McRedmond JP, de Stefani A, Gallagher WM, Gaora PO.
PLoS ONE (2009) 4(3): e5001
Sensitive and Specific Identification of Wild Type and Variant Proteins
from 8 to 669 kDa Using Top-down Mass Spectrometry
Mol Cell Proteomics (2009) 8(4): 846-856
RAMI: a tool for identification and characterization of phylogenetic clusters in microbial communities
Thomas Pommier, Bjorn Canback, Per Lundberg, Ake Hagstrom, and Anders Tunlid
Bioinformatics (2009) 25(6): 736-742
Domain mobility in proteins: functional and evolutionary implications
Malay Kumar Basu, Eugenia Poliakov, and Igor B. Rogozin
Brief Bioinform (2009) 10(3): 205-216
An insight into high-resolution mass-spectrometry data
Eckel-Passow JE, Oberg AL, Therneau TM, Bergen HR 3rd.
Biostatistics Early Edition: published 26-Mar-2009
The Cartographers toolbox: building bigger and better human protein interaction networks
Christopher M. Sanderson
Brief Funct Genomic Proteomic (2009) 8(1): 1-11
A pitfall of wiki solution for biological databases
Masanori Arita
Brief Bioinform (2009) 10(3): 295-296
Discovery and Scoring of Protein Interaction Subnetworks Discriminative of
Late Stage Human Colon Cancer
Mol Cell Proteomics (2009) 8(4): 827-845
'Double water exclusion': a hypothesis refining the O-ring theory for the hot spots at protein interfaces
Jinyan Li and Qian Liu
Bioinformatics (2009) 25(6): 743-750
A simple workflow to increase MS2 identification rate by subsequent spectral library search
Erik Ahrn, Alexandre Masselot, Pierre-Alain Binz, Markus Mller, Frederique Lisacek
PROTEOMICS (2009) 9(6): 1731-1736
Bioinformatics analysis of mass spectrometry-based proteomics data sets
Kumar C, Mann M.
FEBS Lett Early Edition: published 20-Mar-2009
Comparative Proteomic Phenotyping of Cell Lines and Primary Cells to Assess
Preservation of Cell Type-specific Functions
Mol Cell Proteomics (2009) 8(3): 443-450
Alterations in Rat Serum Proteome and Metabolome as Putative Disease Markers in Sepsis
Hinkelbein J, Feldmann RE Jr, Schubert C, Peterka A, Schelshorn D, Maurer MH, Kalenka A.
J Trauma (2009) 66(4): 1065-1075
Proteome changes induced by aluminium stress in tomato roots
Zhou S, Sauvé R, Thannhauser TW.
J Exp Bot (2009) 60(6): 1849-57
Proteomics analysis of perilymph and cerebrospinal fluid in mouse
Leary Swan EE, Peppi M, Chen Z, Green KM, Evans JE, McKenna MJ, Mescher MJ, Kujawa SG, Sewell WF.
Laryngoscope (2009) 119(5): 953-8
Proteomic identification of extracellular proteins regulated by the Gna1 Ga subunit in Stagonospora nodorum
Tan KC, Heazlewood JL, Millar AH, Oliver RP, Solomon PS.
Mycol Res Early Edition: published 21-Jan-2009
Proteomic analysis of rat hippocampus exposed to the antidepressant paroxetine
McHugh P, Rogers G, Glubb D, Joyce P, Kennedy M.
J Psychopharmacol Early Edition: published 3-Apr-2009
Identification of Integrin {alpha}3 as a New Substrate of the Adenovirus E4orf6/E1B55K E3 Ubiquitin Ligase Complex
Dallaire F, Blanchette P, Groitl P, Dobner T, Branton PE.
J Virol Early Edition: published 18-Mar-2009
Anterior hippocampus in schizophrenia pathogenesis: molecular evidence from a proteome study
Nesvaderani M, Matsumoto I, Sivagnanasundaram S.
Aust N Z J Psychiatry (2009) 43(4): 310-22
Naturally Generated Small Peptides Derived from Myofibrillar Proteins in Serrano Dry-Cured Ham
Mora L, Sentandreu MA, Koistinen KM, Fraser PD, Toldrá F, Bramley PM.
J Agric Food Chem (2009) 57(8): 3228-34
Upregulation of immunity-related GTPase (IRG) proteins by TNF-alpha in murine astrocytes
Yamada K, Akimoto H, Ogawa Y, Kinumi T, Kamagata Y, Ohmiya Y.
Biochem Biophys Res Commun (2009) 382(2): 434-9
Proteomic analysis of rat brains following exposure to electroconvulsive therapy
Lee CS, Kang KR, Lee JY, Park CS, Hahn KH, Sohn JW, Kim BJ.
J Korean Med Sci (2009) 24(1): 132-7
Proteomic analyses of the response of cyanobacteria to different stress conditions
Castielli O, De la Cerda B, Navarro JA, Hervás M, De la Rosa MA.
FEBS Lett Early Edition: published 4-Apr-2009
Proteomics analysis of protein expression and specific protein oxidation in human papillomavirus transformed keratinocytes upon UVB irradiation
Perluigi M, Giorgi A, Blarzino C, De Marco F, Foppoli C, Di Domenico F, Butterfield DA, Schininà ME, Cini C, Coccia R.
J Cell Mol Med Early Edition: published 9-Aug-2008
Comparative Functional Analysis of the Caenorhabditis elegans and Drosophila melanogaster Proteomes
Schrimpf SP, Weiss M, Reiter L, Ahrens CH, Jovanovic M, Malmström J, Brunner E, Mohanty S, Lercher MJ, Hunziker PE, Aebersold R, von Mering C, Hengartner MO.
PLoS Biol (2009) 7(3): e48
Proteomic Analysis of the Mouse Ovary in Response to Two Gonadotropins, Follicle-Stimulating Hormone and Luteinizing Hormone
Satoh M, Tokoro M, Ikegami H, Nagai K, Sono Y, Shin SW, Nishikawa S, Saeki K, Hosoi Y, Iritani A, Fukuda A, Morimoto Y, Matsumoto K.
J Reprod Dev Early Edition: published 26-Mar-2009
Differential Protein Expression Profiles in Salicylate Ototoxicity of the Mouse Cochlea
Jung HH, Kim HJ, Im GJ, Chang J, Choi J, Chae SW.
Hear Res Early Edition: published 28-Feb-2009
The role of peptides and proteins in melanoidin formation
Anna Smaniotto, Antonella Bertazzo, Stefano Comai, Pietro Traldi
Journal of Mass Spectrometry (2009) 44(3): 410-418
Proteomic and functional analysis of NCS-1 binding proteins reveals novel signaling pathways required for inner ear development in zebrafish
Petko JA, Kabbani N, Frey C, Woll M, Hickey K, Craig M, Canfield VA, Levenson R.
BMC Neurosci (2009) 10(1): 27
The Retinal Proteome in Experimental Diabetic Retinopathy: Up-regulation of
Crystallins and Reversal by Systemic and Periocular Insulin
Mol Cell Proteomics (2009) 8(4): 767-779
Analysis of the periplasmic proteome of Pseudomonas aeruginosa, a metabolically versatile opportunistic pathogen
Francesco Imperi, Fabiola Ciccosanti, Ariel Basulto Perdomo, Federica Tiburzi, Carmine Mancone, Tonino Alonzi, Paolo Ascenzi, Mauro Piacentini, Paolo Visca, Gian Maria Fimia
PROTEOMICS (2009) 9(7): 1901-1915
Protein expression profile in the differentiation of rat bone marrow stromal cells into Schwann cell-like cells
Li W, Sun H, Xu Z, Ding F, Gu X.
Sci China C Life Sci (2009) 52(3): 267-77
Distinguishing Mouse Strains by Proteomic Analysis of Pelage Hair
Rice RH, Rocke DM, Tsai HS, Silva KA, Lee YJ, Sundberg JP.
J Invest Dermatol Early Edition: published 19-Mar-2009
Two-dimensional Blue Native/SDS-PAGE Analysis Reveals Heat Shock Protein
Chaperone Machinery Involved in Hepatitis B Virus Production in HepG2.2.15
Mol Cell Proteomics (2009) 8(3): 495-505
Identification and bioinformatic analysis of the membrane proteins of synechocystis sp. PCC 6803
Wang Y, Xu W, Chitnis P.
Proteome Science (2009) 7(1): 11
Discovery and Scoring of Protein Interaction Subnetworks Discriminative of
Late Stage Human Colon Cancer
Mol Cell Proteomics (2009) 8(4): 827-845
AKT/eNOS signaling module functions as a potential feedback loop in the growth hormone signaling pathway
Li CJ, Elsasser TH, Kahl S.
J Mol Signal (2009) 4(1): 1
High Content Cell Screening in a Microfluidic Device
Raymond Cheong, Chiaochun Joanne Wang, and Andre Levchenko
Mol Cell Proteomics (2009) 8(3): 433-442
Differential Expression of Surface Glycoconjugates on Entamoeba histolytica and Entamoeba dispar
Pacheco-Yépez J, Campos-Rodríguez R, Rojas-Hernández S, Serrano-Luna JJ, Rivera-Aguilar V, Villa-Treviño S, Martínez-Palomo A, Tsutsumi V, Shibayama M.
Parasitol Int (2009) 58(2): 171-7
Chapter 8 Two-dimensional native electrophoresis for fluorescent and functional assays of mitochondrial complexes
Wumaier Z, Nübel E, Wittig I, Schägger H.
Methods Enzymol (2009) 456: 153-68
Definition of Arabidopsis Sterol-rich Membrane Microdomains by Differential
Treatment with Methyl-{beta}-cyclodextrin and Quantitative Proteomics
Mol Cell Proteomics (2009) 8(4): 612-623
Proteomic identification of dopamine-conjugated proteins from isolated rat brain mitochondria and SH-SY5Y cells
Van Laar VS, Mishizen AJ, Cascio M, Hastings TG.
Neurobiol Dis Early Edition: published 27-Mar-2009
Ciliary neurotrophic factor (CNTF) plus soluble CNTF receptor alpha increases cyclooxygenase-2 expression, PGE2 release and interferon-gamma induced CD40 in murine microglia
Lin HW, Jain MR, Li H, Levison SW.
J Neuroinflammation (2009) 6(1): 7
Proteomic analysis of Giardia: Studies from the pre and post genomic era
Steuart RF.
Exp Parasitol Early Edition: published 23-Mar-2009
Identification of polyubiquitin binding proteins involved in NF-kappaB signaling using protein arrays
Fenner BJ, Scannell M, Prehn JH.
Biochim Biophys Acta Early Edition: published 10-Mar-2009
Proteomic study on gender differences in aging kidney of mice
Amelina H, Cristobal S.
Proteome Science (2009) 7(1): 16
High-resolution differentiation of transmissible spongiform encephalopathy strains by quantitative N-terminal amino acid profiling (N-TAAP) of PK-digested abnormal prion protein
Adriana Gielbert, Linda A. Davis, A. Robin Sayers, James Hope, Andrew C. Gill, Maurice J. Sauer
Journal of Mass Spectrometry (2009) 44(3): 384-396
Comprehensive proteome analysis of lettuce latex using multidimensional protein-identification technology
Cho WK, Chen XY, Uddin NM, Rim Y, Moon J, Jung JH, Shi C, Chu H, Kim S, Kim SW, Park ZY, Kim JY.
Phytochemistry (2009) 70(5): 570-8
The proteome of mesenteric lymph during acute pancreatitis and implications for treatment
Mittal A, Phillips AR, Middleditch M, Ruggiero K, Loveday B, Delahunt B, Cooper GJ, Windsor JA.
JOP (2009) 10(2): 130-42
A Large Number of Protein Expression Changes Occur Early in Life and
Precede Phenotype Onset in a Mouse Model for Huntington Disease
Mol Cell Proteomics (2009) 8(4): 720-734
Shotgun mass spectrometry analysis of the human thalamus proteome
Martins-de-Souza D, Maccarrone G, Reckow S, Falkai P, Schmitt A, Turck CW.
J Sep Sci (2009) 32(8): 1231-6
Functional Differentiation of Brassica napus Guard Cells and Mesophyll
Cells Revealed by Comparative Proteomics
Mol Cell Proteomics (2009) 8(4): 752-766
Comparative proteomic profile of rat sciatic nerve and gastrocnemius muscle tissues in ageing by 2-D DIGE
Daniele Capitanio, Michele Vasso, Chiara Fania, Manuela Moriggi, Agnese Vigan, Patrizia Procacci, Valerio Magnaghi, Cecilia Gelfi
PROTEOMICS (2009) 9(7): 2004-2020
Tyrosine phosphoproteome of hamster spermatozoa: Role of glycerol-3-phosphate dehydrogenase 2 in sperm capacitation
Venkatesh Kota, Vishnu M. Dhople, Sisinthy Shivaji
PROTEOMICS (2009) 9(7): 1809-1826
Quantification of Greenland halibut serum vitellogenin: a trip from the deep sea to the mass spectrometer
Alejandro M. Cohen, Farid Jahouh, Salim Sioud, Rick M. Rideout, M. Joanne Morgan, Joseph H. Banoub
Rapid Communications in Mass Spectrometry (2009) 23(7): 1049-1060
Phenotypic characteristics of Streptococcus iniae and Streptococcus parauberis isolated from olive flounder (Paralichthys olivaceus)
Nho SW, Shin GW, Park SB, Jang HB, Cha IS, Ha MA, Kim YR, Park YK, Dalvi RS, Kang BJ, Joh SJ, Jung TS.
FEMS Microbiol Lett (2009) 293(1): 20-7
Chapter 6 Mass spectrometric characterization of the thirteen subunits of bovine respiratory complexes that are encoded in mitochondrial DNA
Walker JE, Carroll J, Altman MC, Fearnley IM.
Methods Enzymol (2009) 456: 111-31
Quantitative Proteomics Characterization of a Mouse Embryonic Stem Cell
Model of Down Syndrome
Mol Cell Proteomics (2009) 8(4): 585-595
Proteomic analysis of salt-stressed tomato (Solanum lycposersicum) seedlings: effect of genotype and exogenous application of glycinebetaine
Chen S, Gollop N, Heuer B.
J Exp Bot Early Edition: published 30-Mar-2009
The impact of surfactant protein-A on ozone-induced changes in the mouse bronchoalveolar lavage proteome
Haque R, Umstead TM, Freeman WM, Floros J, Phelps DS.
Proteome Science (2009) 7(1): 12
Proteomic analysis of osteogenic differentiation of dental follicle precursor cells
Christian Morsczeck, Jrgen Petersen, Florian Vllner, Oliver Driemel, Torsten Reichert, Hans Christian Beck
ELECTROPHORESIS (2009) 30(7): 1175-1184
HIV-1 transforms the monocyte plasma membrane proteome
Kadiu I, Wang T, Schlautman JD, Dubrovsky L, Ciborowski P, Bukrinsky M, Gendelman HE.
Cell Immunol Early Edition: published 7-Apr-2009
Peroxiredoxin-6 - A Potential Protein Marker for Meat Tenderness in Bovine M. Longissimus Thoracis Muscle
Jia X, Veiseth-Kent E, Grove H, Kuziora P, Aass L, Hildrum KI, Hollung K.
J Anim Sci Early Edition: published 9-Apr-2009
Nm23-H1 is responsible for SUMO-2-involved DNA synthesis induction after X-ray irradiation in human cells
Guo WZ, Sugaya S, Satoh M, Tomonaga T, Nomura F, Hiwasa T, Takiguchi M, Kita K, Suzuki N.
Arch Biochem Biophys Early Edition: published 27-Mar-2009
Ischemic preconditioning improves islet recovery after pancreas cold preservation
Hogan AR, Doni M, Ribeiro MM, Molano RD, Cobianchi L, Molina J, Zahr E, Ricordi C, Pastori RL, Pileggi A.
Transplant Proc (2009) 41(1): 354-5
Subproteome analysis of the neutrophil cytoskeleton
Ping Xu, Mark Crawford, Michael Way, Jasminka Godovac-Zimmermann, Anthony W. Segal, Marko Radulovic
PROTEOMICS (2009) 9(7): 2037-2049
A novel phospholipase A(2 ) from Agkistrodon blomhoffii ussurensis venom: Purification, proteomic, functional and structural characterizations
Sun MZ, Liu S, Yang F, Greenaway FT, Xu Y.
Biochimie Early Edition: published 5-Feb-2009
Proteomic Analysis of Changes Induced By Nonylphenol in Sprague-Dawley Rat Sertoli Cells
Wu J, Wang F, Gong Y, Li D, Sha J, Huang X, Han X.
Chem Res Toxicol (2009) 22(4): 668-75
Proteomic Analysis by Two-Dimensional Differential Gel Electrophoresis (2D DIGE) of a High-Pressure Effect in Bacillus cereus
Martínez-Gomariz M, Hernáez ML, Gutiérrez D, Ximénez-Embún P, Préstamo G.
J Agric Food Chem Early Edition: published 1-Apr-2009
Systematic Mapping of Posttranslational Modifications in Human Estrogen
Receptor-{alpha} with Emphasis on Novel Phosphorylation Sites
Mol Cell Proteomics (2009) 8(3): 467-480
Proteomics of regulated secretory organelles
Brunner Y, Schvartz D, Couté Y, Sanchez JC.
Mass Spectrom Rev Early Edition: published 19-Mar-2009
A mass spectrometry based imaging method developed for the intracellular detection of HIV protease inhibitors
Lennard J. M. Dekker, Jeroen J. A. van Kampen, Mariska L. Reedijk, Peter C. Burgers, Rob A. Gruters, Albert D. M. E. Osterhaus, Theo M. Luider
Rapid Communications in Mass Spectrometry (2009) 23(8): 1183-1188
Grape and Wine Proteins: Their Fractionation by Hydrophobic Interaction Chromatography and Identification by Chromatographic and Proteomic Analysis
Marangon M, Van Sluyter SC, Haynes PA, Waters EJ.
J Agric Food Chem Early Edition: published 8-Apr-2009
Proteomics-based Identification of Novel Factor Inhibiting
Hypoxia-inducible Factor (FIH) Substrates Indicates Widespread Asparaginyl
Mol Cell Proteomics (2009) 8(3): 535-546
Identification of total and differentially expressed excreted-secreted proteins from Trypanosoma congolense strains exhibiting different virulence and pathogenicity
Grébaut P, Chuchana P, Brizard JP, Demettre E, Seveno M, Bossard G, Jouin P, Vincendeau P, Bengaly Z, Boulangé A, Cuny G, Holzmuller P.
Int J Parasitol Early Edition: published 12-Mar-2009
Nuclear translocation of dihydrofolate reductase is not a pre-requisite for DNA damage induced apoptosis
Yuan TT, Huang Y, Zhou CX, Yu Y, Wang LS, Zhuang HY, Chen GQ.
Apoptosis Early Edition: published 10-Apr-2009
High-content Functional Screen to Identify Proteins that Correct
F508del-CFTR Function
Mol Cell Proteomics (2009) 8(4): 780-790
Functional proteomics identify cornichon proteins as auxiliary subunits of AMPA receptors
Schwenk J, Harmel N, Zolles G, Bildl W, Kulik A, Heimrich B, Chisaka O, Jonas P, Schulte U, Fakler B, Klöcker N.
Science (2009) 323(5919): 1313-9
Biomarkers for Prediction of Bovine Respiratory Disease Outcome
Aich P, Babiuk LA, Potter AA, Griebel P.
OMICS Early Edition: published 10-Mar-2009
Higher TRIP-1 Level Explains Diminished Collagen Contraction Ability of Fetal Versus Adult Fibroblasts
Navarro A, Rezaiekhaligh M, Keightley JA, Mabry SM, Perez RE, Ekekezie II.
Am J Physiol Lung Cell Mol Physiol Early Edition: published 27-Mar-2009
Filarial parasites in the postgenomic era
Specht S, Hoerauf A.
Expert Rev Anti Infect Ther (2009) 7(2): 189-92
Identification of flooding stress responsible cascades in root and hypocotyl of soybean using proteome analysis
Komatsu S, Sugimoto T, Hoshino T, Nanjo Y, Furukawa K.
Amino Acids Early Edition: published 31-Mar-2009
Establishment of a proteomic reference map for the gastrocnemius muscle in the rabbit (Oryctolagus cuniculus)
Almeida AM, Campos A, van Harten S, Cardoso LA, Coelho AV.
Res Vet Sci Early Edition: published 24-Mar-2009
Identification of metastasis-associated proteins involved in gallbladder carcinoma metastasis by proteomic analysis and functional exploration of chloride intracellular channel 1
Wang JW, Peng SY, Li JT, Wang Y, Zhang ZP, Cheng Y, Cheng DQ, Weng WH, Wu XS, Fei XZ, Quan ZW, Li JY, Li SG, Liu YB.
Cancer Lett Early Edition: published 17-Mar-2009
A proteomic survey of Chlamydomonas reinhardtii mitochondria sheds new light on the metabolic plasticity of the organelle and on the nature of the {alpha}-proteobacterial mitochondrial ancestor
Atteia A, Adrait A, Brugière S, Tardif M, van Lis R, Deusch O, Dagan T, Kuhn L, Gontero B, Martin W, Garin J, Joyard J, Rolland N.
Mol Biol Evol Early Edition: published 6-Apr-2009
Brugia malayi Excreted/Secreted Proteins at the Host/Parasite Interface: Stage- and Gender-Specific Proteomic Profiling
Bennuru S, Semnani R, Meng Z, Ribeiro JM, Veenstra TD, Nutman TB.
PLoS Negl Trop Dis (2009) 3(4): e410
Identification of IbeR as a stationary-phase regulator in meningitic Escherichia coli K1 that carries a loss-of-function mutation in rpoS
Chi F, Wang Y, Gallaher TK, Wu CH, Jong A, Huang SH.
J Biomed Biotechnol (2009) 2009: 520283
Identification of Replication-competent HSV-1 Cgal+ Strain Signaling
Targets in Human Hepatoma Cells by Functional Organelle Proteomics
Mol Cell Proteomics (2009) 8(4): 805-815
Insights into the physiology of Methylotenera mobilis as revealed by metagenome-based shotgun proteomic analysis
Bosch G, Wang T, Latypova E, Kalyuzhnaya MG, Hackett M, Chistoserdova L.
Microbiology (2009) 155(Pt 4): 1103-10
Functional regulation and proteomic characterization of human natural killer cells through recombinant human granulocyte-colony stimulating factor treatment
Yu-Jen Chen, Chih-Chia Yu, Shui-Tein Chen, Tai-Yuan Chen, Hui-Fen Liao
PROTEOMICS - CLINICAL APPLICATIONS (2009) 3(5): 563-573
High-throughput screening of Erwinia chrysanthemi pectin methylesterase variants using carbohydrate microarrays
Jens bro, Iben Srensen, Patrick Derkx, Christian T. Madsen, Martin Drews, Martin Willer, Jrn D. Mikkelsen, William G. T. Willats
PROTEOMICS (2009) 9(7): 1861-1868
Differentially-Expressed Genes in Pig Longissimus Muscles with Contrasting Levels of Fat, as Identified by Combined Transcriptomic, Reverse Transcription PCR, and Proteomic Analyses
Liu J, Damon M, Guitton N, Guisle I, Ecolan P, Vincent A, Cherel P, Gondret F.
J Agric Food Chem Early Edition: published 18-Mar-2009
Rapid Changes of mRNA-binding Protein Levels following Glucose and
3-Isobutyl-1-methylxanthine Stimulation of Insulinoma INS-1 Cells
Mol Cell Proteomics (2009) 8(3): 393-408
Comprehensive proteomic analysis of Schizosaccharomyces pombe by two-dimensional HPLC-tandem mass spectrometry
Brill LM, Motamedchaboki K, Wu S, Wolf DA.
Methods Early Edition: published 6-Mar-2009
Altered Secretome of Burkholderia pseudomallei Induced by Salt Stress
Pumirat P, Saetun P, Sinchaikul S, Chen ST, Korbsrisate S, Thongboonkerd V.
Biochim Biophys Acta Early Edition: published 10-Feb-2009
Comparison of proteomic and transcriptomic profiles in the bronchial airway epithelium of current and never smokers
Steiling K, Kadar AY, Bergerat A, Flanigon J, Sridhar S, Shah V, Ahmad QR, Brody JS, Lenburg ME, Steffen M, Spira A.
PLoS ONE (2009) 4(4): e5043
Proteomic analysis of Drosophila mojavensis male accessory glands suggests novel classes of seminal fluid proteins
Kelleher ES, Watts TD, Laflamme BA, Haynes PA, Markow TA.
Insect Biochem Mol Biol Early Edition: published 27-Mar-2009
Proteomic Analysis of Defined HDL Subpopulations Reveals Particle-Specific Protein Clusters. Relevance to Antioxidative Function
Davidson WS, Silva RA, Chantepie S, Lagor WR, Chapman MJ, Kontush A.
Arterioscler Thromb Vasc Biol Early Edition: published 26-Mar-2009
Proteomic Analysis of the Anti-Cancer Effect of 20S-Ginsenoside Rg(3) in Human Colon Cancer Cell Lines
Lee SY, Kim GT, Roh SH, Song JS, Kim HJ, Hong SS, Kwon SW, Park JH.
Biosci Biotechnol Biochem (2009) 73(4): 811-6
Shotgun mass mapping of Lactobacillus species and subspecies from caries related isolates by MALDI-MS
Frank Schmidt, Thomas Fiege, Hanne K. Hustoft, Susanne Kneist, Bernd Thiede
PROTEOMICS (2009) 9(7): 1994-2003
Identification of the proteomic changes in Synechocystis sp. PCC 6803 following prolonged UV-B irradiation
Gao Y, Xiong W, Li XB, Gao CF, Zhang YL, Li H, Wu QY.
J Exp Bot (2009) 60(4): 1141-54
Effects of chronic morphine treatment on protein expression in rat dorsal root ganglia
Li Q, Zhao X, Zhong LJ, Yang HY, Wang Q, Pu XP.
Eur J Pharmacol Early Edition: published 1-Apr-2009
The cost of resistance to colistin in Acinetobacter baumannii: a proteomic perspective
Mara Fernndez-Reyes, Manuel Rodrguez-Falcn, Cristina Chiva, Jernimo Pachn, David Andreu, Luis Rivas
PROTEOMICS (2009) 9(6): 1632-1645
Nitroproteomics of peripheral blood mononuclear cells from patients and a rat model of ALS
Bonetto V, Nardo G, Pozzi S, Mantovani S, Garbelli S, Marinou K, Basso M, Mora G, Bendotti C.
Antioxid Redox Signal Early Edition: published 16-Mar-2009
Deinococcus radiodurans PprI Switches on DNA Damage Response and Cellular
Survival Networks after Radiation Damage
Mol Cell Proteomics (2009) 8(3): 481-494
Hop proanthocyanidins induce apoptosis, protein carbonylation, and cytoskeleton disorganization in human colorectal adenocarcinoma cells via reactive oxygen species
Chung WG, Miranda CL, Stevens JF, Maier CS.
Food Chem Toxicol (2009) 47(4): 827-36
A proteomic approach for studying insect phylogeny: CAPA peptides of ancient insect taxa (Dictyoptera, Blattoptera) as a test case
Roth S, Fromm B, Gaede G, Predel R.
BMC Evol Biol (2009) 9(1): 50
Interactions between ingested kaolinite and the intestinal mucosa in rat: proteomic and cellular evidences
Reichardt F, Habold C, Chaumande B, Ackermann A, Ehret-Sabatier L, Le Maho Y, Angel F, Liewig N, Lignot JH.
Fundam Clin Pharmacol (2009) 23(1): 69-79
Subcellular proteomics of Trypanosoma cruzi reservosomes
Celso Sant'Anna, Ernesto S. Nakayasu, Miria G. Pereira, Daniela Loureno, Wanderley de Souza, Igor C. Almeida, Narcisa L. Cunha-e-Silva
PROTEOMICS (2009) 9(7): 1782-1794
Identification of glycoprotein receptors within the human salivary proteome for the lectin-like BabA and SabA adhesins of Helicobacter pylori by fluorescence-based 2-D bacterial overlay
Anke Walz, Stefan Odenbreit, Kai Sthler, Andreas Wattenberg, Helmut E. Meyer, Jafar Mahdavi, Thomas Born, Stefan Ruhl
PROTEOMICS (2009) 9(6): 1582-1592
Proteomic analysis of striatal neuronal cell cultures after morphine administration
Bodzon-Kulakowska A, Suder P, Mak P, Bierczynska-Krzysik A, Lubec G, Walczak B, Kotlinska J, Silberring J.
J Sep Sci (2009) 32(8): 1200-10
Protein Profile of Nomuraea rileyi Spore Isolated from Infected Silkworm
Qin L, Liu X, Li J, Chen H, Yao Q, Yang Z, Wang L, Chen K.
Curr Microbiol Early Edition: published 14-Mar-2009
Proteome Changes in Wheat Subjected to Different Nitrogen and Sulfur Fertilizations
Grove H, Hollung K, Moldestad A, Færgestad EM, Uhlen AK.
J Agric Food Chem Early Edition: published 9-Apr-2009
Proteomic identification of Bacillus thuringiensis subsp. israelensis toxin Cry4Ba binding proteins in midgut membranes from Aedes (Stegomyia) aegypti Linnaeus (Diptera, Culicidae) larvae
Bayyareddy K, Andacht TM, Abdullah MA, Adang MJ.
Insect Biochem Mol Biol (2009) 39(4): 279-86
Functional genomics and proteomics approaches to study the ERBB network in cancer
Sahin O, Wiemann S.
FEBS Lett Early Edition: published 21-Mar-2009
Schistosoma japonicum: proteomics analysis of differentially expressed proteins from ultraviolet-attenuated cercariae compared to normal cercariae
Yang LL, Lv ZY, Hu SM, He SJ, Li ZY, Zhang SM, Zheng HQ, Li MT, Yu XB, Fung MC, Wu ZD.
Parasitol Res Early Edition: published 17-Mar-2009
A Surface Display Yeast Two Hybrid Screening System for High Throughput Protein Interactome Mapping
Chen J, Zhou J, Sanders CK, Nolan JP, Cai H.
Anal Biochem Early Edition: published 16-Mar-2009
High-throughput proteomics detection of novel splice isoforms in human platelets
Power KA, McRedmond JP, de Stefani A, Gallagher WM, Gaora PO.
PLoS ONE (2009) 4(3): e5001
Proteome of the bacterium Mycoplasma gallisepticum
Demina IA, Serebryakova MV, Ladygina VG, Rogova MA, Zgoda VG, Korzhenevskyi DA, Govorun VM.
Biochemistry (Mosc) (2009) 74(2): 165-74
Phosphoproteomic analysis of ethylene-regulated protein phosphorylation in etiolated seedlings of Arabidopsis mutant ein2 using two-dimensional separations coupled with a hybrid quadrupole time-of-flight mass spectrometer
Hao Li, Wai Shing Wong, Lin Zhu, Hong Wei Guo, Joseph Ecker, Ning Li
PROTEOMICS (2009) 9(6): 1646-1661
Quantitative proteomics reveals the function of unconventional ubiquitin chains in proteasomal degradation
Xu P, Duong DM, Seyfried NT, Cheng D, Xie Y, Robert J, Rush J, Hochstrasser M, Finley D, Peng J.
Cell (2009) 137(1): 133-45
In-depth proteome analysis of Arabidopsis leaf peroxisomes combined with in vivo subcellular targeting verification indicates novel metabolic and regulatory functions of peroxisomes
Reumann S, Quan S, Aung K, Yang P, Manandhar-Shrestha K, Holbrook D, Linka N, Switzenberg R, Wilkerson CG, Weber AP, Olsen LJ, Hu J.
Plant Physiol Early Edition: published 27-Mar-2009
The Phosphotyrosine Interactome of the Insulin Receptor Family and Its
Substrates IRS-1 and IRS-2
Mol Cell Proteomics (2009) 8(3): 519-534
Relaxed control of sugar utilization in Lactobacillus brevis
Kim JH, Shoemaker SP, Mills DA.
Microbiology (2009) 155(Pt 4): 1351-9
Induction of Distinct Defense-Associated Protein Patterns in Aphanomyces euteiches (Oomycota)-Elicited and -Inoculated Medicago truncatula Cell-Suspension Cultures: A Proteome and Phosphoproteome Approach
Trapphoff T, Beutner C, Niehaus K, Colditz F.
Mol Plant Microbe Interact (2009) 22(4): 421-36
Proteomic analysis of lactose-starved Lactobacillus casei during stationary growth phase
Hussain MA, Knight MI, Britz ML.
J Appl Microbiol (2009) 106(3): 764-73
Identification and validation of calmodulin as a binding protein of an anti-proliferative small molecule 3,4-dihydroisoquinolinium salt
Hye Jin Jung, Joong Sup Shim, Jungchan Park, Hyun-Joon Ha, Jung-Ho Kim, Joong-Gon Kim, Nam Doo Kim, Jeong Hyeok Yoon, Ho Jeong Kwon
PROTEOMICS - CLINICAL APPLICATIONS (2009) 3(4): 423-432
Proteome analysis of the hyaluronic acid-producing bacterium, Streptococcus zooepidemicus
Marcellin E, Gruber CW, Archer C, Craik DJ, Nielsen LK.
Proteome Science (2009) 7(1): 13
Identification of proteins of Neisseria meningitidis induced under iron-limiting conditions using the isobaric tandem mass tag (TMT) labeling approach
Peter van Ulsen, Karsten Kuhn, Thorsten Prinz, Harald Legner, Peter Schmid, Christian Baumann, Jan Tommassen
PROTEOMICS (2009) 9(7): 1771-1781
Identification of the small protein rich in arginine and glycine (SRAG): A newly identified nucleolar protein that can regulate cell proliferation
Zullo AJ, Michaud M, Zhang W, Grusby MJ.
J Biol Chem (2009) 284(18): 12504-11
Novel Multiprotein Complexes Identified in the Hyperthermophilic Archaeon
Pyrococcus furiosus by Non-denaturing Fractionation of the Native Proteome
Mol Cell Proteomics (2009) 8(4): 735-751
Effect of tannic acid on Lactobacillus plantarum wine strain during starvation: A proteomic study
Daniela Cecconi, Marta Cristofoletti, Alberto Milli, Paolo Antonioli, Sara Rinalducci, Lello Zolla, Giacomo Zapparoli
ELECTROPHORESIS (2009) 30(6): 957-965
Glutathione transferase (GST) as a candidate molecular-based biomarker for soil toxin exposure in the earthworm Lumbricus rubellus
Lacourse EJ, Hernandez-Viadel M, Jefferies JR, Svendsen C, Spurgeon DJ, Barrett J, Kille P, Brophy PM.
Environ Pollut Early Edition: published 3-Apr-2009
Rapid Myeloid Cell Transcriptional and Proteomic Responses to Periodontopathogenic Porphyromonas gingivalis
Nares S, Moutsopoulos NM, Angelov N, Rangel ZG, Munson PJ, Sinha N, Wahl SM.
Am J Pathol (2009) 174(4): 1400-14
Differential N-glycosylation of Kallikrein 6 Derived from Ovarian Cancer
Cells or the Central Nervous System
Mol Cell Proteomics (2009) 8(4): 791-798
Anterior hippocampus in schizophrenia pathogenesis: molecular evidence from a proteome study
Nesvaderani M, Matsumoto I, Sivagnanasundaram S.
Aust N Z J Psychiatry (2009) 43(4): 310-22
Pharmacologic intervention targeting glycolytic-related pathways protects against retinal injury due to ischemia and reperfusion
Ling Zheng, Shuqing Liu, Ming-Zhong Sun, Jinsook Chang, Mark R. Chance, Timothy S. Kern
PROTEOMICS (2009) 9(7): 1869-1882
Secretome-based proteomics reveals sulindac-modulated proteins released from colon cancer cells
Hong Ji, David W. Greening, Eugene A. Kapp, Robert L. Moritz, Richard J. Simpson
PROTEOMICS - CLINICAL APPLICATIONS (2009) 3(4): 433-451
Proteomic Analysis of the Anti-Cancer Effect of 20S-Ginsenoside Rg(3) in Human Colon Cancer Cell Lines
Lee SY, Kim GT, Roh SH, Song JS, Kim HJ, Hong SS, Kwon SW, Park JH.
Biosci Biotechnol Biochem (2009) 73(4): 811-6
Proteome responses to stable hepatitis B virus transfection and following interferon alpha treatment in human liver cell line HepG2
Jianghua Wang, Dong Jiang, Henghui Zhang, Sa Lv, Huiying Rao, Ran Fei, Lai Wei
PROTEOMICS (2009) 9(6): 1672-1682
Cardiac stem/progenitor cells, secreted proteins, and proteomics
Stastna M, Abraham MR, Van Eyk JE.
FEBS Lett Early Edition: published 20-Mar-2009
Low molecular weight proteins in urines from healthy subjects as well as diabetic, nephropathic and diabetic-nephropathic patients: a MALDI study
Annunziata Lapolla, Roberta Seraglia, Laura Molin, Katherine Williams, Chiara Cosma, Rachele Reitano, Annalisa Sechi, Eugenio Ragazzi, Pietro Traldi
Journal of Mass Spectrometry (2009) 44(3): 419-425
Anatomic site-specific proteomic signatures of gastrointestinal stromal tumors
Yoshiyuki Suehara, Kazutaka Kikuta, Robert Nakayama, Kiyonaga Fujii, Hitoshi Ichikawa, Tatsuhiro Shibata, Kunihiko Seki, Tadashi Hasegawa, Masahiro Gotoh, Naobumi Tochigi, Tadakazu Shimoda, Yasuhiro Shimada, Takeshi Sano, Yasuo Beppu, Hisashi Kurosawa, Setsuo Hirohashi, Akira Kawai, Tadashi Kondo
PROTEOMICS - CLINICAL APPLICATIONS (2009) 3(5): 584-596
Comparative proteomic study of two closely related ovarian endometrioid adenocarcinoma cell lines using cIEF fractionation and pathway analysis
Lan Dai, Chen Li, Kerby A. Shedden, David E. Misek, David M. Lubman
ELECTROPHORESIS (2009) 30(7): 1119-1131
Functional regulation and proteomic characterization of human natural killer cells through recombinant human granulocyte-colony stimulating factor treatment
Yu-Jen Chen, Chih-Chia Yu, Shui-Tein Chen, Tai-Yuan Chen, Hui-Fen Liao
PROTEOMICS - CLINICAL APPLICATIONS (2009) 3(5): 563-573
Nitroproteomics of peripheral blood mononuclear cells from patients and a rat model of ALS
Bonetto V, Nardo G, Pozzi S, Mantovani S, Garbelli S, Marinou K, Basso M, Mora G, Bendotti C.
Antioxid Redox Signal Early Edition: published 16-Mar-2009
Changes of hepatic proteome in bile duct ligated rats with hepatic fibrosis following treatment with Yin-Chen-Hao-Tang
Lee TY, Chang HH, Kuo JJ, Shen JJ.
Int J Mol Med (2009) 23(4): 477-84
Proteomic analysis of GTP cyclohydrolase 1 multiprotein complexes in cultured normal adult human astrocytes under both basal and cytokine-activated conditions
Anna Chiarini, Ubaldo Armato, Raffaella Pacchiana, Ilaria Dal Pra
PROTEOMICS (2009) 9(7): 1850-1860
Using Antibody Arrays to Detect Microparticles from Acute Coronary Syndrome
Patients Based on Cluster of Differentiation (CD) Antigen Expression
Mol Cell Proteomics (2009) 8(4): 799-804
Construction of A Multiple Myeloma Diagnostic Model by Magnetic Bead-Based MALDI-TOF Mass Spectrometry of Serum and Pattern Recognition Software
Wang QT, Li YZ, Liang YF, Hu CJ, Zhai YH, Zhao GF, Zhang J, Li N, Ni AP, Chen WM, Xu Y.
Anat Rec (Hoboken) (2009) 292(4): 604-610
Proteomics-based identification of alpha1-Antitrypsin and Haptoglobin precursors as novel serum markers in infiltrating ductal breast carcinomas
Hamrita B, Chahed K, Trimeche M, Guillier CL, Hammann P, Chaïeb A, Korbi S, Chouchane L.
Clin Chim Acta Early Edition: published 20-Mar-2009
Proteomic study on gender differences in aging kidney of mice
Amelina H, Cristobal S.
Proteome Science (2009) 7(1): 16
Combined analysis of transcriptome and proteome data as a tool for the identification of candidate biomarkers in renal cell carcinoma
Barbara Seliger, Sven P. Dressler, Ena Wang, Roland Kellner, Christian V. Recktenwald, Friedrich Lottspeich, Francesco M. Marincola, Maja Baumgrtner, Derek Atkins, Rudolf Lichtenfels
PROTEOMICS (2009) 9(6): 1567-1581
Optimization of magnetic beads for maldi-TOF MS analysis
Qiu F, Liu HY, Zhang XJ, Tian YP.
Front Biosci (2009) 14: 3712-23.
Protein markers of Marteilia sydneyi infection in Sydney rock oysters, Saccostrea glomerata
Simonian M, Nair SV, O'Connor WA, Raftos DA.
J Fish Dis (2009) 32(4): 367-75
HIV-1 transforms the monocyte plasma membrane proteome
Kadiu I, Wang T, Schlautman JD, Dubrovsky L, Ciborowski P, Bukrinsky M, Gendelman HE.
Cell Immunol Early Edition: published 7-Apr-2009
Nucleophosmin as a Candidate Prognostic Biomarker of Ewing's Sarcoma Revealed by Proteomics
Kikuta K, Tochigi N, Shimoda T, Yabe H, Morioka H, Toyama Y, Hosono A, Beppu Y, Kawai A, Hirohashi S, Kondo T.
Clin Cancer Res (2009) 15(8): 2885-94
Persistent proteomic alterations in the medial prefrontal cortex with abstinence from cocaine self-administration
Melinda E. Lull, Mandi S. Erwin, Drake Morgan, David C. S. Roberts, Kent E. Vrana, Willard M. Freeman
PROTEOMICS - CLINICAL APPLICATIONS (2009) 3(4): 462-472
2-DE and MS analysis of key proteins in the adhesion of Lactobacillus plantarum, a first step toward early selection of probiotics based on bacterial biomarkers
Esther Izquierdo, Peter Horvatovich, Eric Marchioni, Dalal Aoude-Werner, Yolanda Sanz, Sad Ennahar
ELECTROPHORESIS (2009) 30(6): 949-956
The proteome of the human parotid gland secretion in elderly with and without root caries
Preza D, Thiede B, Olsen I, Grinde B.
Acta Odontol Scand (2009) 67(3): 161-9
Targeted detection of prostate cancer proteins in serum using heavy-isotope-labeled-peptide standards and MALDI-TOF/TOF
Yan Li, Lori J. Sokoll, John Rush, Danni Meany, Nan Zou, Daniel W. Chan, Hui Zhang
PROTEOMICS - CLINICAL APPLICATIONS (2009) 3(5): 597-608
Upregulation of immunity-related GTPase (IRG) proteins by TNF-alpha in murine astrocytes
Yamada K, Akimoto H, Ogawa Y, Kinumi T, Kamagata Y, Ohmiya Y.
Biochem Biophys Res Commun (2009) 382(2): 434-9
Identifying serological biomarkers of hepatocellular carcinoma using surface-enhanced laser desorption/ionization-time-of-flight mass spectroscopy
Wu FX, Wang Q, Zhang ZM, Huang S, Yuan WP, Liu JY, Ban KC, Zhao YN.
Cancer Lett Early Edition: published 4-Mar-2009
Heterogeneous Nuclear Ribonucleoprotein H1, a Novel Nuclear Autoantigen
Van den Bergh K, Hooijkaas H, Blockmans D, Westhovens R, Op De Beéck K, Verschueren P, Dufour D, van de Merwe JP, Fijak M, Klug J, Michiels G, Devogelaere B, De Smedt H, Derua R, Waelkens E, Blanckaert N, Bossuyt X.
Clin Chem (2009) 55(5): 946-54
Thymosin ?4 is differentially expressed in the cerebrospinal fluid of Creutzfeldt-Jakob disease patients: a MALDI-TOF MS protein profiling study
Antonio Qualtieri, Elena Urso, Maria Le Pera, Sabrina Bossio, Francesca Bernaudo, Tiziana Ferraro, Lucia Crescibene, Umberto Aguglia, Aldo Quattrone
PROTEOMICS - CLINICAL APPLICATIONS (2009) 3(5): 574-583
Alterations of the microRNA network cause neurodegenerative disease
Hébert SS, De Strooper B.
Trends Neurosci (2009) 32(4): 199-206
Glycoproteomic analysis of WGA-bound glycoprotein biomarkers in sera from patients with lung adenocarcinoma
Piyorot Hongsachart, Rosa Huang-Liu, Supachok Sinchaikul, Fu-Ming Pan, Suree Phutrakul, Yu-Min Chuang, Chong-Jen Yu, Shui-Tein Chen
ELECTROPHORESIS (2009) 30(7): 1206-1220
2-Methoxyestradiol mediated signaling network in pancreatic cancer
Basu A, Haldar S.
Front Biosci (2009) 14: 2170-80.
Oxidatively modified proteins in Alzheimer's disease (AD), mild cognitive impairment and animal models of AD: role of Abeta in pathogenesis
Sultana R, Perluigi M, Butterfield DA.
Acta Neuropathol Early Edition: published 14-Mar-2009
Reverse proteomic antibody screening identifies anti adhesive VHH targeting VLA-3
Groot AJ, Khattabi ME, Sachs N, van der Groep P, van der Wall E, van Diest PJ, Sonnenberg A, Verrips CT, Vooijs M.
Mol Immunol Early Edition: published 7-Apr-2009
Evolving 'omics' technologies for diagnostics of head and neck cancer
Nagathihalli S. Nagaraj
Brief Funct Genomic Proteomic (2009) 8(1): 49-59
Proteomic analysis of multidrug-resistance mechanisms in adriamycin-resistant variants of DLKP, a squamous lung cancer cell line
Joanne Keenan, Lisa Murphy, Michael Henry, Paula Meleady, Martin Clynes
PROTEOMICS (2009) 9(6): 1556-1566
Identification of a unique urinary biomarker profile in patients with autosomal dominant polycystic kidney disease
Kistler AD, Mischak H, Poster D, Dakna M, Wüthrich RP, Serra AL.
Kidney Int Early Edition: published 1-Apr-2009
Core-shell hydrogel particles harvest, concentrate and preserve labile low abundance biomarkers
Longo C, Patanarut A, George T, Bishop B, Zhou W, Fredolini C, Ross MM, Espina V, Pellacani G, Petricoin EF 3rd, Liotta LA, Luchini A.
PLoS ONE (2009) 4(3): e4763
Proteomic analysis of the bacterial pathogen Bartonella henselae and identification of immunogenic proteins for serodiagnosis
Christian Eberhardt, Susanne Engelmann, Harald Kusch, Dirk Albrecht, Michael Hecker, Ingo B. Autenrieth, Volkhard A. J. Kempf
PROTEOMICS (2009) 9(7): 1967-1981
Proteome Analysis of Gelatin-Bound Salivary Proteins in Patients with Primary Sjögren's Syndrome- Identification of Matrix Metalloproteinase-
Ito K, Funayama S, Hitomi Y, Nomura S, Katsura K, Saito M, Hayashi T, Kaneko N, Nohno K, Igarashi A.
Clin Chim Acta (2009) 403(1-2): 269-71
Proteomic Signatures of Epidermal Growth Factor Receptor and Survival Signal Pathways Correspond to Gefitinib Sensitivity in Head and Neck Cancer
Pernas FG, Allen CT, Winters ME, Yan B, Friedman J, Dabir B, Saigal K, Mundinger GS, Xu X, Morris JC, Calvo KR, Van Waes C, Chen Z.
Clin Cancer Res (2009) 15(7): 2361-72
Development of reverse phase protein microarrays for the validation of clusterin, a mid-abundant blood biomarker
Aguilar-Mahecha A, Cantin C, O'Connor-McCourt M, Nantel A, Basik M.
Proteome Science (2009) 7(1): 15
Non-invasive biomarker sampling and analysis of the exhaled breath proteome
Karolien Bloemen, Jef Hooyberghs, Kristine Desager, Erwin Witters, Greet Schoeters
PROTEOMICS - CLINICAL APPLICATIONS (2009) 3(4): 498-504
Enrichment of MCI and Early Alzheimer's Disease Treatment Trials Using Neurochemical and Imaging Candidate Biomarkers
Hampel H, Broich K.
J Nutr Health Aging (2009) 13(4): 373-375
Differential Expression of Small Heat Shock Protein 27 (Hsp27) in Ataxia telangiectasia Brains
Chen W, Kuizon S, Chiou BL, Bolton DC, Pullarkat RK, Junaid MA.
Neurochem Res Early Edition: published 26-Mar-2009
The effects of infliximab therapy on the serum proteome of rheumatoid arthritis patients
Dwivedi RC, Dhindsa N, Krokhin OV, Cortens J, Wilkins JA, El-Gabalawy HS.
Arthritis Res Ther (2009) 11(2): R32
Proteomic profiles differ between bone invasive and noninvasive benign meningiomas of fibrous and meningothelial subtype
Wibom C, Mörén L, Aarhus M, Knappskog PM, Lund-Johansen M, Antti H, Bergenheim AT.
J Neurooncol Early Edition: published 7-Apr-2009
The protein expression of TRP-1 and galectin-1 in cutaneous malignant melanomas
Bolander A, Agnarsdóttir M, Strömberg S, Ponten F, Hesselius P, Uhlen M, Bergqvist M.
Cancer Genomics Proteomics (2008) 5(6): 293-300
Proteomic Helicobacter pylori biomarkers discriminating between duodenal ulcer and gastric cancer
Khoder G, Yamaoka Y, Fauchère JL, Burucoa C, Atanassov C.
J Chromatogr B (2009) 877(11-12): 1193-9
Proteomic analysis of peritoneal fluid in fertile and infertile women with endometriosis
Ferrero S, Gillott DJ, Remorgida V, Anserini P, Ragni N, Grudzinskas JG.
J Reprod Med (2009) 54(1): 32-40
Polymorphisms of COTL1 gene identified by proteomic approach and their association with autoimmune disorders
Jin EH, Shim SC, Kim HG, Chae SC, Chung HT.
Exp Mol Med Early Edition: published 23-Mar-2009
Proteomic analysis of protein complexes in human SH-SY5Y neuroblastoma cells by using blue-native gel electrophoresis: An increase in lamin A/C associated with heat shock protein 90 in response to 6-hydroxydopamine-induced oxidative stress
Nakamura M, Morisawa H, Imajoh-Ohmi S, Takamura C, Fukuda H, Toda T.
Exp Gerontol Early Edition: published 2-Mar-2009
Alterations in Rat Serum Proteome and Metabolome as Putative Disease Markers in Sepsis
Hinkelbein J, Feldmann RE Jr, Schubert C, Peterka A, Schelshorn D, Maurer MH, Kalenka A.
J Trauma (2009) 66(4): 1065-1075
Biomarkers of HIV-1 associated dementia: proteomic investigation of sera
Wiederin J, Rozek W, Duan F, Ciborowski P.
Proteome Science (2009) 7(1): 8
Identification of CHI3L1 and MASP2 as a biomarker pair for liver cancer through integrative secretome and transcriptome analysis
Jun Wang, Feng Gao, Fan Mo, Xu Hong, Hongyang Wang, Shusen Zheng, Biaoyang Lin
PROTEOMICS - CLINICAL APPLICATIONS (2009) 3(5): 541-551
Afamin and Apolipoprotein A-IV: Novel Protein Markers for Ovarian Cancer
Dieplinger H, Ankerst DP, Burges A, Lenhard M, Lingenhel A, Fineder L, Buchner H, Stieber P.
Cancer Epidemiol Biomarkers Prev (2009) 18(4): 1127-33
2-D DIGE identification of differentially expressed heterogeneous nuclear ribonucleoproteins and transcription factors during neural differentiation of human embryonic stem cells
Miguel Barthlry, Amritha Jaishankar, Ugur Salli, Willard M. Freeman, Kent E. Vrana
PROTEOMICS - CLINICAL APPLICATIONS (2009) 3(4): 505-514
Human Immunodeficiency Virus (HIV) Antigens and RNA in HIV-Seronegative Women with Cervical Intraepithelial Neoplasia
Basu J, Romney SL, Angeletti RH, Vermund SH, Nieves E, Kadish AS, Mikhail MS, Orr GA.
AIDS Res Hum Retroviruses (2009) 25(3): 249-59
SELDI-TOF as a method for biomarker discovery in the urine of aristolochic-acid-treated mice
Feilei Huang, James Clifton, Xinli Yang, Thomas Rosenquist, Douglas Hixson, Spomenka Kovac, Djuro Josic
ELECTROPHORESIS (2009) 30(7): 1168-1174
Genomic and oncoproteomic advances in detection and treatment of colorectal cancer
McHugh SM, O'Donnell J, Gillen P.
World J Surg Oncol (2009) 7(1): 36
Therapeutic strategies in the treatment of diabetic nephropathy - a translational medicine approach
Shah IM, Mackay SP, McKay GA.
Curr Med Chem (2009) 16(8): 997-1016
Nitrated {alpha}-synuclein-induced alterations in microglial immunity are regulated by CD4+ T cell subsets
Reynolds AD, Stone DK, Mosley RL, Gendelman HE.
J Immunol (2009) 182(7): 4137-49
2-D PAGE-based comparison of proteasome inhibitor bortezomib in sensitive and resistant mantle cell lymphoma
Marc Weinkauf, Yvonne Zimmermann, Elena Hartmann, Andreas Rosenwald, Malte Rieken, Alessandro Pastore, Grit Hutter, Wolfgang Hiddemann, Martin Dreyling
ELECTROPHORESIS (2009) 30(6): 974-986
Immuno-MALDI-TOF MS: New perspectives for clinical applications of mass spectrometry
Katrin Sparbier, Thomas Wenzel, Hassan Dihazi, Sabine Blaschke, Gerhard-Anton Mller, Andr Deelder, Thomas Flad, Markus Kostrzewa
PROTEOMICS (2009) 9(6): 1442-1450
Mass Spectrometry-based Proteomic Profiling of Lung Cancer
Ocak S, Chaurand P, Massion PP.
Proc Am Thorac Soc (2009) 6(2): 159-70
Identification of metastasis-associated proteins involved in gallbladder carcinoma metastasis by proteomic analysis and functional exploration of chloride intracellular channel 1
Wang JW, Peng SY, Li JT, Wang Y, Zhang ZP, Cheng Y, Cheng DQ, Weng WH, Wu XS, Fei XZ, Quan ZW, Li JY, Li SG, Liu YB.
Cancer Lett Early Edition: published 17-Mar-2009
Temporally resolved differential proteomic analysis of human ventricular CSF for monitoring traumatic brain injury biomarker candidates
Hanrieder J, Wetterhall M, Enblad P, Hillered L, Bergquist J.
J Neurosci Methods (2009) 177(2): 469-78
Neural Phosphoproteomics of a Chronic Hypoxia Model - Lymnaea stagnalis
Silverman-Gavrila LB, Lu TZ, Prashad RC, Nejatbakhsh N, Charlton MP, Feng ZP.
Neuroscience Early Edition: published 23-Mar-2009
Hypothermia enhances heat-shock protein 70 production in ischemic brains
Terao Y, Miyamoto S, Hirai K, Kamiguchi H, Ohta H, Shimojo M, Kiyota Y, Asahi S, Sakura Y, Shintani Y.
Neuroreport Early Edition: published 4-Apr-2009
Brain-specific Proteins Decline in the Cerebrospinal Fluid of Humans with
Huntington Disease
Mol Cell Proteomics (2009) 8(3): 451-466
Identification of proteins associated to multi-drug resistance in LoVo human colon cancer cells
Visentin M, Simula MP, Sartor F, Petrucco A, De Re V, Toffoli G.
Int J Oncol (2009) 34(5): 1281-9
Identification of melanoma-specific serological markers using proteomic analyses
Masako Takikawa, Yasuto Akiyama, Tadashi Ashizawa, Akifumi Yamamoto, Naoya Yamazaki, Yoshio Kiyohara, Naoto Oku, Ken Yamaguchi
PROTEOMICS - CLINICAL APPLICATIONS (2009) 3(5): 552-562
Proteomic and metabolic prediction of response to therapy in gastrointestinal cancers
Herrmann K, Walch A, Balluff B, Tänzer M, Höfler H, Krause BJ, Schwaiger M, Friess H, Schmid RM, Ebert MP.
Nat Clin Pract Gastroenterol Hepatol (2009) 6(3): 170-83
The proteome of mesenteric lymph during acute pancreatitis and implications for treatment
Mittal A, Phillips AR, Middleditch M, Ruggiero K, Loveday B, Delahunt B, Cooper GJ, Windsor JA.
JOP (2009) 10(2): 130-42
Establishment of a proteomic reference map for the gastrocnemius muscle in the rabbit (Oryctolagus cuniculus)
Almeida AM, Campos A, van Harten S, Cardoso LA, Coelho AV.
Res Vet Sci Early Edition: published 24-Mar-2009
Effect of surface-enhanced laser desorption/ionization time-of-flight mass spectrometry on identifing biomarkers of endometriosis
Zhang H, Feng J, Chang XH, Li ZX, Wu XY, Cui H.
Chin Med J (Engl) (2009) 122(4): 373-6
Iron-Related Proteins: Candidate Urine Biomarkers in Childhood HIV-Associated Renal Diseases
Soler-García AA, Johnson D, Hathout Y, Ray PE.
Clin J Am Soc Nephrol (2009) 4(4): 763-71
Serum Proteomic Profiling in Patients with Bladder Cancer
Schwamborn K, Krieg RC, Grosse J, Reulen N, Weiskirchen R, Knuechel R, Jakse G, Henkel C.
Eur Urol Early Edition: published 6-Mar-2009
Serum Amyloid A As a Prognostic Marker in Melanoma Identified by Proteomic Profiling
Findeisen P, Zapatka M, Peccerella T, Matzk H, Neumaier M, Schadendorf D, Ugurel S.
J Clin Oncol Early Edition: published 23-Mar-2009
Atorvastatin modifies the protein profile of circulating human monocytes after an acute coronary syndrome
Mara G. Barderas, Jos Tun, Vernica M. Dard, Fernando De la Cuesta, Jos J. Jimnez-Ncher, Nieves Tarn, Lorenzo Lpez-Bescs, Jess Egido, Fernando Vivanco
PROTEOMICS (2009) 9(7): 1982-1993
Fast-twitch sarcomeric and glycolytic enzyme protein loss in inclusion body myositis
Parker KC, Kong SW, Walsh RJ, Salajegheh M, Moghadaszadeh B, Amato AA, Nazareno R, Lin YY, Krastins B, Sarracino DA, Beggs AH, Pinkus JL, Greenberg SA.
Muscle Nerve Early Edition: published 16-Mar-2009
Two-dimensional gel proteome reference map of human small intestine
Simula MP, Cannizzaro R, Marin MD, Pavan A, Toffoli G, Canzonieri V, De Re V.
Proteome Science (2009) 7(1): 10
A proteomic approach to characterizing ciglitazone-induced cancer cell differentiation in Hep-g2 cell line
Bottoni P, Giardina B, Vitali A, Boninsegna A, Scatena R.
Biochim Biophys Acta (2009) 1794(4): 615-26
Alterations to the protein profile of bladder carcinoma cell lines induced by plant extract MINA-05 in vitro
Terry Nguyen-Khuong, Melanie Y. White, Tzong-Tyng Hung, Shona Seeto, Melissa L. Thomas, Anna M. Fitzgerald, Carlos E. Martucci, Sharon Luk, Shiu-Fu Pang, Pamela J. Russell, Bradley J. Walsh
PROTEOMICS (2009) 9(7): 1883-1892
Comparative proteomic analysis of differentially expressed proteins in human pancreatic cancer tissue
Chen JH, Ni RZ, Xiao MB, Guo JG, Zhou JW.
Hepatobiliary Pancreat Dis Int (2009) 8(2): 193-200
Nm23-H1 regulates the proliferation and differentiation of the human chronic myeloid leukemia K562 cell line: A functional proteomics study
Jin L, Liu G, Zhang CH, Lu CH, Xiong S, Zhang MY, Liu QY, Ge F, He QY, Kitazato K, Kobayashi N, Wang YF.
Life Sci (2009) 84(13-14): 458-67
Characterization of molecular markers indicative of cervical cancer progression
Hilal Arnouk, Mark A. Merkley, Robert H. Podolsky, Hubert Stppler, Carlos Santos, Manuel lvarez, Julio Mariategui, Daron Ferris, Jeffrey R. Lee, William S. Dynan
PROTEOMICS - CLINICAL APPLICATIONS (2009) 3(5): 516-527
Proteomics Profiling of Pituitary, Adrenal Gland, and Splenic Lymphocytes in Rats with Middle Cerebral Artery Occlusion
Xiong X, Liang Q, Chen J, Fan R, Cheng T.
Biosci Biotechnol Biochem (2009) 73(3): 657-64
Protein expression profiles in pediatric multiple sclerosis: potential biomarkers
Rithidech K, Honikel L, Milazzo M, Madigan D, Troxell R, Krupp L.
Mult Scler (2009) 15(4): 455-64
Proteomic identification of anti-cancer proteins in luteolin-treated human hepatoma Huh-7 cells
Yoo DR, Jang YH, Jeon YK, Kim JY, Jeon W, Choi YJ, Nam MJ.
Cancer Lett Early Edition: published 31-Mar-2009
Similar proteomic profiles of human mesenchymal stromal cells from different donors
Lazzarotto-Silva C, Binato R, Rocher BD, Costa JA, Pizzatti L, Bouzas LF, Abdelhay E.
Cytotherapy Early Edition: published 30-Mar-2009
Proteomic Analysis of the Mouse Ovary in Response to Two Gonadotropins, Follicle-Stimulating Hormone and Luteinizing Hormone
Satoh M, Tokoro M, Ikegami H, Nagai K, Sono Y, Shin SW, Nishikawa S, Saeki K, Hosoi Y, Iritani A, Fukuda A, Morimoto Y, Matsumoto K.
J Reprod Dev Early Edition: published 26-Mar-2009
Integrative analysis of cancer pathway progression and coherence
Ertugrul Dalkic, Daniel Elwin Walter Nash, Mohammad Kasim Fassia, Christina Chan
PROTEOMICS - CLINICAL APPLICATIONS (2009) 3(4): 473-485
Innovative biomarkers for prostate cancer early diagnosis and progression
You J, Cozzi P, Walsh B, Willcox M, Kearsley J, Russell P, Li Y.
Crit Rev Oncol Hematol Early Edition: published 26-Mar-2009
Searching for proteins of Mycobacterium avium subspecies paratuberculosis with diagnostic potential by comparative qualitative proteomic analysis of mycobacterial tuberculins
Santema W, Overdijk M, Barends J, Krijgsveld J, Rutten V, Koets A.
Vet Microbiol Early Edition: published 20-Mar-2009
GST-P1 as a histological biomarker of synovial sarcoma revealed by proteomics
Yoshiyuki Suehara, Kazutaka Kikuta, Robert Nakayama, Naobumi Tochigi, Kunihiko Seki, Hitoshi Ichikawa, Kiyonaga Fujii, Tadashi Hasegawa, Tadakazu Shimoda, Hisashi Kurosawa, Hirokazu Chuman, Yasuo Beppu, Akira Kawai, Setsuo Hirohashi, Tadashi Kondo
PROTEOMICS - CLINICAL APPLICATIONS (2009) 3(5): 623-634
Discovery and identification of potential biomarkers of pediatric Acute Lymphoblastic Leukemia
Shi L, Zhang J, Wu P, Feng K, Li J, Xie Z, Xue P, Cai T, Cui Z, Chen X, Hou J, Zhang J, Yang F.
Proteome Science (2009) 7(1): 7
Proteomic and phosphoproteomic alterations in benign, premalignant and tumor human breast epithelial cells and xenograft lesions: Biomarkers of progression
Kim SH, Miller FR, Tait L, Zheng J, Novak RF.
Int J Cancer (2009) 124(12): 2813-28
Comparative proteome analysis using amine-reactive isobaric tagging reagents coupled with 2D-LC-MS-MS in 3T3-L1 adipocytes following hypoxia or normoxia
Choi SK, Cho K, Kim J, Yea K, Park G, Lee J, Ryu SH, Kim JK, Kim YH.
Biochem Biophys Res Commun (2009) 383(1): 135-40
Glycoproteomics in neurodegenerative diseases
Hwang H, Zhang J, Chung KA, Leverenz JB, Zabetian CP, Peskind ER, Jankovic J, Su Z, Hancock AM, Pan C, Montine TJ, Pan S, Nutt J, Albin R, Gearing M, Beyer RP, Shi M, Zhang J.
Mass Spectrom Rev Early Edition: published 8-Apr-2009
Upregulation of phosphorylated alphaB-crystallin in the brain of children and young adults with Down syndrome
Palminiello S, Jarząbek K, Kaur K, Walus M, Rabe A, Albertini G, Golabek AA, Kida E.
Brain Res Early Edition: published 6-Mar-2009
Towards defining the whole salivary peptidome
Rui Vitorino, Antnio Barros, Armando Caseiro, Pedro Domingues, Jos Duarte, Francisco Amado
PROTEOMICS - CLINICAL APPLICATIONS (2009) 3(5): 528-540
Candidate autoantigens identified by mass spectrometry in early rheumatoid arthritis are chaperones and citrullinated glycolytic enzymes
Goeb V, Thomas-L'otellier M, Daveau R, Charlionet R, Fardellone P, Le Loet X, Tron F, Gilbert D, Vittecoq O.
Arthritis Res Ther (2009) 11(2): R38
Antigenic stimulation with cytochrome P450 2J expressed in mouse hepatocellular carcinoma cells regulates host anti-tumour immunity
Homma S, Koido S, Sagawa Y, Suzuki H, Komita H, Nagasaki E, Takahara A, Horiguchi-Yamada J, Tajiri H, Zeldin DC, Obata T.
Clin Exp Immunol (2009) 156(2): 344-52
Role of soluble CD14 in cerebrospinal fluid as a regulator of glial functions
Yin GN, Jeon H, Lee S, Lee HW, Cho JY, Suk K.
J Neurosci Res Early Edition: published 9-Apr-2009
Proteomics identification of differentially expressed proteins in the muscle of dysferlin myopathy patients
Carolina De la Torre, Isabel Illa, Georgine Faulkner, Laura Soria, Rene Robles-Cedeo, Raul Dominguez-Perles, Noem De Luna, Eduard Gallardo
PROTEOMICS - CLINICAL APPLICATIONS (2009) 3(4): 486-497
Changes of serum-associated fucosylated glycoproteins and changes in glycosylation of IgA in human cirrhosis
Yoann Carr, Andr Klein, Philippe Mathurin, Jean-Claude Michalski, Willy Morelle
PROTEOMICS - CLINICAL APPLICATIONS (2009) 3(5): 609-622
Rapid Myeloid Cell Transcriptional and Proteomic Responses to Periodontopathogenic Porphyromonas gingivalis
Nares S, Moutsopoulos NM, Angelov N, Rangel ZG, Munson PJ, Sinha N, Wahl SM.
Am J Pathol (2009) 174(4): 1400-14
Proteomic analysis of striatal neuronal cell cultures after morphine administration
Bodzon-Kulakowska A, Suder P, Mak P, Bierczynska-Krzysik A, Lubec G, Walczak B, Kotlinska J, Silberring J.
J Sep Sci (2009) 32(8): 1200-10
Mining the Ovarian Cancer Ascites Proteome for Potential Ovarian Cancer
Biomarkers
Mol Cell Proteomics (2009) 8(4): 661-669
Proteomics/peptidomics tools to find CSF biomarkers for neurodegenerative diseases
Westman-Brinkmalm A, Ruetschi U, Portelius E, Andreasson U, Brinkmalm G, Karlsson G, Hansson S, Zetterberg H, Blennow K.
Front Biosci (2009) 14: 1793-806.
Proteomic Analysis of Changes Induced By Nonylphenol in Sprague-Dawley Rat Sertoli Cells
Wu J, Wang F, Gong Y, Li D, Sha J, Huang X, Han X.
Chem Res Toxicol (2009) 22(4): 668-75
Identification of human gastric carcinoma biomarkers by differential protein expression analysis using (18)O labeling and NanoLC-MS/MS coupled with laser capture microdissection
Zhiqiang Z, Maoyu L, Guiying Z, Fang P, Huixing Y, Zhiqiang X, Zhuchu C.
Med Oncol Early Edition: published 28-Mar-2009
Highly sensitive detection of melanoma based on serum proteomic profiling
Caron J, Mangé A, Guillot B, Solassol J.
J Cancer Res Clin Oncol Early Edition: published 14-Mar-2009
Alterations in Fatty Acid Utilization and an Impaired Antioxidant Defense Mechanism Are Early Events in Podocyte Injury. A Proteomic Analysis
Mayrhofer C, Krieger S, Huttary N, Chang MW, Grillari J, Allmaier G, Kerjaschki D.
Am J Pathol (2009) 174(4): 1191-202
Mitochondrial ATP-Synthase in the Entorhinal Cortex Is a Target of Oxidative Stress at Stages I/II of Alzheimer's Disease Pathology
Terni B, Boada J, Portero-Otin M, Pamplona R, Ferrer I.
Brain Pathol Early Edition: published 27-Feb-2009
Synergistic effect of trichostatin A and 5-aza-2?-deoxycytidine on growth inhibition of pancreatic endocrine tumour cell lines: A proteomic study
Daniela Cecconi, Massimo Donadelli, Elisa Dalla Pozza, Sara Rinalducci, Lello Zolla, Maria Teresa Scupoli, Pier Giorgio Righetti, Aldo Scarpa, Marta Palmieri
PROTEOMICS (2009) 9(7): 1952-1966
Cardiac stem/progenitor cells, secreted proteins, and proteomics
Stastna M, Abraham MR, Van Eyk JE.
FEBS Lett Early Edition: published 20-Mar-2009
Brugia malayi Excreted/Secreted Proteins at the Host/Parasite Interface: Stage- and Gender-Specific Proteomic Profiling
Bennuru S, Semnani R, Meng Z, Ribeiro JM, Veenstra TD, Nutman TB.
PLoS Negl Trop Dis (2009) 3(4): e410
Proteomic identification of dopamine-conjugated proteins from isolated rat brain mitochondria and SH-SY5Y cells
Van Laar VS, Mishizen AJ, Cascio M, Hastings TG.
Neurobiol Dis Early Edition: published 27-Mar-2009
Urine proteomic profiling of uranium nephrotoxicity
Malard V, Gaillard JC, Bérenguer F, Sage N, Quéméneur E.
Biochim Biophys Acta Early Edition: published 6-Feb-2009
Two-dimensional gel proteome reference map of human small intestine
Simula MP, Cannizzaro R, Marin MD, Pavan A, Toffoli G, Canzonieri V, De Re V.
Proteome Science (2009) 7(1): 10
Differential Expression of Small Heat Shock Protein 27 (Hsp27) in Ataxia telangiectasia Brains
Chen W, Kuizon S, Chiou BL, Bolton DC, Pullarkat RK, Junaid MA.
Neurochem Res Early Edition: published 26-Mar-2009
Proteomics of regulated secretory organelles
Brunner Y, Schvartz D, Couté Y, Sanchez JC.
Mass Spectrom Rev Early Edition: published 19-Mar-2009
A proteomic survey of Chlamydomonas reinhardtii mitochondria sheds new light on the metabolic plasticity of the organelle and on the nature of the {alpha}-proteobacterial mitochondrial ancestor
Atteia A, Adrait A, Brugière S, Tardif M, van Lis R, Deusch O, Dagan T, Kuhn L, Gontero B, Martin W, Garin J, Joyard J, Rolland N.
Mol Biol Evol Early Edition: published 6-Apr-2009
Mapping and proteomic analysis of albumin and globulin proteins in hexaploid wheat kernels (Triticum aestivum L.)
Merlino M, Leroy P, Chambon C, Branlard G.
Theor Appl Genet (2009) 118(7): 1321-37
Serum protein profiling by solid phase extraction and mass spectrometry: A future diagnostics tool?
Anne K. Callesen, Jonna S. Madsen, Werner Vach, Torben A. Kruse, Ole Mogensen, Ole N. Jensen
PROTEOMICS (2009) 9(6): 1428-1441
Proteomic analysis of osteogenic differentiation of dental follicle precursor cells
Christian Morsczeck, Jrgen Petersen, Florian Vllner, Oliver Driemel, Torsten Reichert, Hans Christian Beck
ELECTROPHORESIS (2009) 30(7): 1175-1184
Fast-twitch sarcomeric and glycolytic enzyme protein loss in inclusion body myositis
Parker KC, Kong SW, Walsh RJ, Salajegheh M, Moghadaszadeh B, Amato AA, Nazareno R, Lin YY, Krastins B, Sarracino DA, Beggs AH, Pinkus JL, Greenberg SA.
Muscle Nerve Early Edition: published 16-Mar-2009
Comparative proteomic profile of rat sciatic nerve and gastrocnemius muscle tissues in ageing by 2-D DIGE
Daniele Capitanio, Michele Vasso, Chiara Fania, Manuela Moriggi, Agnese Vigan, Patrizia Procacci, Valerio Magnaghi, Cecilia Gelfi
PROTEOMICS (2009) 9(7): 2004-2020
Affinity prefractionation for MS-based plasma proteomics
Maria Pernemalm, Rolf Lewensohn, Janne Lehti
PROTEOMICS (2009) 9(6): 1420-1427
Differences in protein distribution between human plasma preparations, EDTA-plasma and heparin-plasma, analyzed by non-denaturing micro-2-DE and MALDI-MS PMF
Ya Jin, Takashi Manabe
ELECTROPHORESIS (2009) 30(6): 931-938
Comparison of 1-D and 2-D LC MS/MS methods for proteomic analysis of human serum
Martin Gilar, Petra Olivova, Asish B. Chakraborty, Aleksander Jaworski, Scott J. Geromanos, John C. Gebler
ELECTROPHORESIS (2009) 30(7): 1157-1167
System Analysis of An Arabidopsis Mutant Altered in de novo Fatty Acid Synthesis Reveals Diverse Changes in Seed Composition and Metabolism
Chen M, Mooney BP, Hajduch M, Joshi T, Zhou M, Xu D, Thelen JJ.
Plant Physiol Early Edition: published 11-Mar-2009
One-dimensional proteomic mapping of human liver cytochromes p450
Lisitsa AV, Petushkova NA, Nikitin IP, Zgoda VG, Karuzina II, Moshkovskii SA, Larina OV, Skipenko OG, Polyschuk LO, Thiele H, Archakov AI.
Biochemistry (Mosc) (2009) 74(2): 153-61
Comparison of proteomic and transcriptomic profiles in the bronchial airway epithelium of current and never smokers
Steiling K, Kadar AY, Bergerat A, Flanigon J, Sridhar S, Shah V, Ahmad QR, Brody JS, Lenburg ME, Steffen M, Spira A.
PLoS ONE (2009) 4(4): e5043
Proteomic identification of carbonylated proteins in the monkey hippocampus after ischemia-reperfusion
Oikawa S, Yamada T, Minohata T, Kobayashi H, Furukawa A, Tada-Oikawa S, Hiraku Y, Murata M, Kikuchi M, Yamashima T.
Free Radic Biol Med Early Edition: published 6-Mar-2009
Comprehensive proteome analysis of lettuce latex using multidimensional protein-identification technology
Cho WK, Chen XY, Uddin NM, Rim Y, Moon J, Jung JH, Shi C, Chu H, Kim S, Kim SW, Park ZY, Kim JY.
Phytochemistry (2009) 70(5): 570-8
Environmental proteomics: applications of proteome profiling in environmental microbiology and biotechnology
Lacerda CM, Reardon KF.
Brief Funct Genomic Proteomic (2009) 8(1): 75-87
Relaxed control of sugar utilization in Lactobacillus brevis
Kim JH, Shoemaker SP, Mills DA.
Microbiology (2009) 155(Pt 4): 1351-9
Benzoate-mediated changes on expression profile of soluble proteins in Serratia sp. DS001
Pandeeti EV, Chinnaboina MR, Siddavattam D.
Lett Appl Microbiol Early Edition: published 9-Mar-2009
New disturbing trend in antimicrobial resistance of gram-negative pathogens
Lee JH, Jeong SH, Cha SS, Lee SH.
PLoS Pathog (2009) 5(3): e1000221
Global systems-level analysis of Hfq and SmpB deletion mutants in Salmonella: implications for virulence and global protein translation
Ansong C, Yoon H, Porwollik S, Mottaz-Brewer H, Petritis BO, Jaitly N, Adkins JN, McClelland M, Heffron F, Smith RD.
PLoS ONE (2009) 4(3): e4809
Searching for proteins of Mycobacterium avium subspecies paratuberculosis with diagnostic potential by comparative qualitative proteomic analysis of mycobacterial tuberculins
Santema W, Overdijk M, Barends J, Krijgsveld J, Rutten V, Koets A.
Vet Microbiol Early Edition: published 20-Mar-2009
Identification of total and differentially expressed excreted-secreted proteins from Trypanosoma congolense strains exhibiting different virulence and pathogenicity
Grébaut P, Chuchana P, Brizard JP, Demettre E, Seveno M, Bossard G, Jouin P, Vincendeau P, Bengaly Z, Boulangé A, Cuny G, Holzmuller P.
Int J Parasitol Early Edition: published 12-Mar-2009
Insights into the physiology of Methylotenera mobilis as revealed by metagenome-based shotgun proteomic analysis
Bosch G, Wang T, Latypova E, Kalyuzhnaya MG, Hackett M, Chistoserdova L.
Microbiology (2009) 155(Pt 4): 1103-10
The role of the AcsF protein in Chloroflexus aurantiacus
Tang KH, Wen J, Li X, Blankenship RE.
J Bacteriol Early Edition: published 3-Apr-2009