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SPS' DigestIssue 62, 31-Jul-2009 |
Algorithms and databases
Martens L, Apweiler R.
Methods Mol Biol (2009) 564: 245-59
Computational biology and structural proteomics
[No authors listed]
Genomic Med Early Edition: published 16-May-2009
Multiple Motif Scanning to Identify Methyltransferases from the Yeast Proteome
Tanya C. Petrossian and Steven G. Clarke
Mol Cell Proteomics (2009) 8(7): 1516-1526
Learning robust cell signalling models from high throughput proteomic data
Koch M, Broom BM, Subramanian D.
Int J Bioinform Res Appl (2009) 5(3): 241-53
Location proteomics: systematic determination of protein subcellular location
Newberg J, Hua J, Murphy RF.
Methods Mol Biol (2009) 500: 313-32
Life Science Research and Drug Discovery at the Turn of the 21st Century: The Experience of SwissBioGrid
Den Besten M, Thomas AJ, Schroeder R.
J Biomed Discov Collab (2009) 4: 5.
Integrated platform for manual and high-throughput statistical validation of tandem mass spectra
Kebing Yu, Anthony Sabelli, Lisa DeKeukelaere, Richard Park, Suzanne Sindi, Constantine A. Gatsonis, Arthur Salomon
PROTEOMICS (2009) 9(11): 3115-3125
Web-based software for rapid "top-down" proteomic identification of protein biomarkers with implications for bacterial identification
Fagerquist CK, Garbus BR, Williams KE, Bates AH, Boyle S, Harden LA.
Appl Environ Microbiol (2009) 75(13): 4341-53
Introducing the CPL/MUW proteome database: Interpretation of human liver and liver cancer proteome profiles by referring to isolated primary cells
Helge Wimmer, Nina C. Gundacker, Johannes Griss, Verena J. Haudek, Stefan Stttner, Thomas Mohr, Hannes Zwickl, Verena Paulitschke, David M. Baron, Wolfgang Trittner, Markus Kubicek, Editha Bayer, Astrid Slany, Christopher Gerner
ELECTROPHORESIS (2009) 30(12): 2076-2089
Augmented training of hidden Markov models to recognize remote homologs via simulated evolution
Anoop Kumar and Lenore Cowen
Bioinformatics (2009) 25(13): 1602-1608
Evaluation of Reference Map for LC-MS Based Quantitative Proteomics
Kim YJ, Feild B, Fitzhugh W, Heidbrink JL, Duff JW, Heil J, Ruben SM, He T.
Anal Biochem Early Edition: published 15-Jun-2009
Quantification and its Applications in Fluorescent Microscopy Imaging
Hamilton N.
Traffic (2009) 10(8): 951-61
ChlamyCyc: an integrative systems biology database and web-portal for Chlamydomonas reinhardtii
May P, Christian JO, Kempa S, Walther D.
BMC Genomics (2009) 10(1): 209
ClanTox: a classifier of short animal toxins
Naamati G, Askenazi M, Linial M.
Nucl Acids Res (2009) 37(Web Server issue): W363-8
Prediction of protein binding regions in disordered proteins
Mészáros B, Simon I, Dosztányi Z.
PLoS Comput Biol (2009) 5(5): e1000376
Improving mass measurement accuracy in mass spectrometry based proteomics by combining open source tools for chromatographic alignment and internal calibration
Magnus Palmblad, Yuri E.M. van der Burgt, Hans Dalebout, Rico J.E. Derks, Bart Schoenmaker, André M. Deelder
Journal of Proteomics (2009) 72(4): 722-724
Computational biology in anti-tuberculosis drug discovery
Murphy DJ, Brown JR.
Infect Disord Drug Targets (2009) 9(3): 319-26
Confidence assessment for protein identification by using peptide-mass fingerprinting data
Zhao Song, Luonan Chen, Dong Xu
PROTEOMICS (2009) 9(11): 3090-3099
Aligning the proteome and genome of the silkworm, Bombyx mori
Zhang Y, Xia Q, Xu J, Chen J, Nie Z, Wang D, Zhang W, Chen J, Zheng Q, Chen Q, Kong L, Ren X, Wang J, Lv Z, Yu W, Jiang C, Liu L, Sheng Q, Jin Y, Wu X.
Funct Integr Genomics Early Edition: published 16-Jun-2009
Classification by Mass Spectrometry Can Accurately and Reliably Predict Outcome in Patients with Non-small Cell Lung Cancer Treated with Erlotinib-Containing Regimen
Salmon S, Chen H, Chen S, Herbst R, Tsao A, Tran H, Sandler A, Billheimer D, Shyr Y, Lee JW, Massion P, Brahmer J, Schiller J, Carbone D, Dang TP.
J Thorac Oncol (2009) 4(6): 689-96
Principal Component Analysis of Proteome Dynamics in Iron-starved Mycobacterium Tuberculosis
Rao PK, Li Q.
J Proteomics Bioinform (2009) 2(1): 19-31
Annotation of Non-synonymous single Polymorphisms in Human Liver Proteome by Mass Spectrometry
Chen M, Yang B, Ying W, He F, Qian X.
Protein Pept Lett Early Edition: published 10-Nov-2009
Deterministic protein inference for shotgun proteomics data provides new insights into Arabidopsis pollen development and function
Grobei MA, Qeli E, Brunner E, Rehrauer H, Zhang R, Roschitzki B, Basler K, Ahrens CH, Grossniklaus U.
Genome Res Early Edition: published 22-Jun-2009
Multi-marker strategies in heart failure: clinical and statistical approaches
Allen LA, Michael Felker G.
Heart Fail Rev Early Edition: published 3-May-2009
Systems approach to explore components and interactions in the presynapse
Noura S. Abul-Husn, Ittai Bushlin, Jos A. Morn, Sherry L. Jenkins, Georgia Dolios, Rong Wang, Ravi Iyengar, Avi Ma'ayan, Lakshmi A. Devi
PROTEOMICS (2009) 9(12): 3303-3315
MaXIC-Q Web: a fully automated web service using statistical and computational methods for protein quantitation based on stable isotope labeling and LC-MS
Tsou CC, Tsui YH, Yian YH, Chen YJ, Yang HY, Yu CY, Lynn KS, Chen YJ, Sung TY, Hsu WL.
Nucl Acids Res (2009) 37(Web Server issue): W661-9
Web-Queryable Large-Scale Data Sets for Hypothesis Generation in Plant Biology
Brady SM, Provart NJ.
Plant Cell (2009) 21(4): 1034-51
Insight into the core and variant exoproteomes of Listeria monocytogenes species by comparative subproteomic analysis
Emilie Dumas, Mickal Desvaux, Christophe Chambon, Michel Hbraud
PROTEOMICS (2009) 9(11): 3136-3155
The mitochondrial proteome database: MitoP2
Elstner M, Andreoli C, Klopstock T, Meitinger T, Prokisch H.
Methods Enzymol (2009) 457: 3-20
SubCellProt: predicting protein subcellular localization using machine learning approaches
Garg P, Sharma V, Chaudhari P, Roy N.
In Silico Biol (2009) 9(1-2): 35-44
Highly accelerated feature detection in proteomics data sets using modern graphics processing units
Rene Hussong, Barbara Gregorius, Andreas Tholey, and Andreas Hildebrandt
Bioinformatics (2009) 25(15): 1937-1943
Protein profile study of breast-tissue homogenates by HPLC-LIF
Kumar KK, Chowdary MV, Mathew S, Rao L, Krishna CM, Kurien J.
J Biophotonics (2009) 2(5): 313-321
Peak detection in mass spectrometry by gabor filters and envelope analysis
Nguyen N, Huang H, Oraintara S, Vo A.
J Bioinform Comput Biol (2009) 7(3): 547-69
Proteomic Feature Maps: A new visualization approach in proteomics analysis
Giannopoulou EG, Garbis SD, Vlahou A, Kossida S, Lepouras G, Manolakos ES.
J Biomed Inform (2009) 42(4): 644-53
A toolbox for validation of mass spectrometry peptides identification and generation of database: IRMa
Veronique Dupierris, Christophe Masselon, Magali Court, Sylvie Kieffer-Jaquinod, and Christophe Bruley
Bioinformatics (2009) 25(15): 1980-1981
Geometric Alignment of 2D Gel Electrophoresis Images
Wörz S, Winz ML, Rohr K.
Methods Inf Med Early Edition: published 5-Jun-2009
Applications of signal processing techniques to bioinformatics, genomics, and proteomics
Serpedin E, Garcia-Frias J, Huang Y, Braga-Neto U.
EURASIP J Bioinform Syst Biol (2009) : 250306.
Domain Interaction Footprint: a multi-classification approach to predict domain-peptide interactions
Christian Schillinger, Prisca Boisguerin, and Gerd Krause
Bioinformatics (2009) 25(13): 1632-1639
Automated comparative protein structure modeling with SWISS-MODEL and Swiss-PdbViewer: A historical perspective
Nicolas Guex, Manuel C. Peitsch, Torsten Schwede
ELECTROPHORESIS (2009) 30(S1): S162-S173
Systematic study of protein sumoylation: Development of a site-specific predictor of SUMOsp 2.0
Jian Ren, Xinjiao Gao, Changjiang Jin, Mei Zhu, Xiwei Wang, Andrew Shaw, Longping Wen, Xuebiao Yao, Yu Xue
PROTEOMICS (2009) 9(12): 3409-3412
PCHM: A bioinformatic resource for high-throughput human mitochondrial proteome searching and comparison
Kim T, Kim E, Park SJ, Joo H.
Comput Biol Med (2009) 39(8): 689-96
Integrative analysis of transcriptomic and proteomic data of Desulfovibrio vulgaris: a non-linear model to predict abundance of undetected proteins
Wandaliz Torres-Garcia, Weiwen Zhang, George C. Runger, Roger H. Johnson, and Deirdre R. Meldrum
Bioinformatics (2009) 25(15): 1905-1914
apLCMS--adaptive processing of high-resolution LC/MS data
Tianwei Yu, Youngja Park, Jennifer M. Johnson, and Dean P. Jones
Bioinformatics (2009) 25(15): 1930-1936
Identification and comparative analysis of the structural proteomes of ?KZ and EL, two giant Pseudomonas aeruginosa bacteriophages
Elke Lecoutere, Pieter-Jan Ceyssens, Konstantin A. Miroshnikov, Vadim V. Mesyanzhinov, Victor N. Krylov, Jean-Paul Noben, Johan Robben, Kirsten Hertveldt, Guido Volckaert, Rob Lavigne
PROTEOMICS (2009) 9(11): 3215-3219
Proteomics of RAW 264.7 macrophages upon interaction with heat-inactivated Candida albicans cells unravel an anti-inflammatory response
Laura Martnez-Solano, Jose Antonio Reales-Caldern, Csar Nombela, Gloria Molero, Concha Gil
PROTEOMICS (2009) 9(11): 2995-3010
Milk Fat Globule Protein Epidermal Growth Factor-8. A Pivotal Relay Element Within the Angiotensin II and Monocyte Chemoattractant Protein-1 Signaling Cascade Mediating Vascular Smooth Muscle Cells Invasion
Fu Z, Wang M, Gucek M, Zhang J, Wu J, Jiang L, Monticone RE, Khazan B, Telljohann R, Mattison J, Sheng S, Cole RN, Spinetti G, Pintus G, Liu L, Kolodgie FD, Virmani R, Spurgeon H, Ingram DK, Everett AD, Lakatta EG, Van Eyk JE.
Circ Res (2009) 104(12): 1337-46
Peptidomic survey of the locust neuroendocrine system
Clynen E, Schoofs L.
Insect Biochem Mol Biol (2009) 39(8): 491-507
Identification and Quantitation of Newly Synthesized Proteins in Escherichia coli by Enrichment of Azidohomoalanine-labeled Peptides with Diagonal Chromatography
Gertjan Kramer, Richard R. Sprenger, JaapWillem Back, Henk L. Dekker, Merel A. Nessen, Jan H. van Maarseveen, Leo J. de Koning, Klaas J. Hellingwerf, Luitzen de Jong, and Chris G. de Koster
Mol Cell Proteomics (2009) 8(7): 1599-1611
Intermittent Hypercapnic Hypoxia Induced Protein Changes in the Piglet Hippocampus Identified by MALDI-TOF-MS
Tang S, Machaalani R, Kashem MA, Matsumoto I, Waters KA.
Neurochem Res Early Edition: published 23-Jun-2009
Transcriptomic and proteomic approach to studying SNX-2112-induced K562 cells apoptosis and anti-leukemia activity in K562-NOD/SCID mice
Jin L, Xiao CL, Lu CH, Xia M, Xing GW, Xiong S, Liu QY, Liu H, Li YC, Ge F, Wang QD, He QY, Wang YF.
FEBS Lett (2009) 583(12): 1859-66
Analysis of Flagellar Phosphoproteins from Chlamydomonas reinhardtii
Boesger J, Wagner V, Weisheit W, Mittag M.
Eukaryot Cell (2009) 8(7): 922-32
Platelet membrane proteomics: a novel repository for functional research
Lewandrowski U, Wortelkamp S, Lohrig K, Zahedi RP, Wolters DA, Walter U, Sickmann A.
Blood (2009) 114(1): e10-9
Comparative Proteomics in the Corpus Callosal Sub-regions of Postmortem Human Brain
Kashem MA, Sarker R, Etages HD, Machaalani R, King N, McGregor IS, Matsumoto I.
Neurochem Int Early Edition: published 8-May-2009
Mitochondrial damage in soybean seed axis during imbibition at chilling temperatures
Yin G, Sun H, Xin X, Qin G, Liang Z, Jing X.
Plant Cell Physiol (2009) 50(7): 1305-18
Differences in Pig Muscle Proteome According to HAL Genotype: Implications for Meat Quality Defects
Laville E, Sayd T, Terlouw C, Blinet S, Pinguet J, Fillaut M, Glénisson J, Chérel P.
J Agric Food Chem (2009) 57(11): 4913-23
Initial comparison of proteomic profiles of whole unstimulated saliva obtained from generalized aggressive periodontitis patients and healthy control subjects
Wu Y, Shu R, Luo LJ, Ge LH, Xie YF.
J Periodontal Res Early Edition: published 18-May-2009
Strawberry proteome characterization and its regulation during fruit ripening and in different genotypes
Linda Bianco, Loredana Lopez, Anna Grazia Scalone, Mariasole Di Carli, Angiola Desiderio, Eugenio Benvenuto, Gaetano Perrotta
Journal of Proteomics (2009) 72(4): 586-607
Proteome analysis of Norway maple (Acer platanoides L.) seeds dormancy breaking and germination: influence of abscisic and gibberellic acids
Pawlowski TA.
BMC Plant Biol (2009) 9(1): 48
Proteomics reveals protein profile changes in cyclooxygenase-2 inhibitor-treated endometrial cancer cells
Yi Z, Jingting C, Yu Z.
Int J Gynecol Cancer (2009) 19(3): 326-33
Activity-based mass spectrometric characterization of proteases and inhibitors in human saliva
Xiuli Sun, Erdjan Salih, Frank G. Oppenheim, Eva J. Helmerhorst
PROTEOMICS - CLINICAL APPLICATIONS (2009) 3(7): 810-820
Evaluation of Protein Phosphorylation Site Predictors
Que S, Wang Y, Chen P, Tang Y, Zhang Z, He H.
Protein Pept Lett Early Edition: published 10-Nov-2009
NDRG1 is down-regulated in the early apoptotic event induced by camptothecin analogs: The potential role in proteolytic activation of PKC? and apoptosis
Ying Zheng, Li-Shun Wang, Li Xia, Yu-Hui Han, Shi-Hua Liao, Xiao-Ling Wang, Jin-Ke Cheng, Guo-Qiang Chen
PROTEOMICS (2009) 9(8): 2064-2075
A proteomic study of pectin-degrading enzymes secreted by Botrytis cinerea grown in liquid culture
Punit Shah, Gerardo Gutierrez-Sanchez, Ron Orlando, Carl Bergmann
PROTEOMICS (2009) 9(11): 3126-3135
Proteomic screening of antioxidant effects exhibited by RadixSalvia miltiorrhiza aqueous extract in cultured rat aortic smooth muscle cells under homocysteine treatment
Hung YC, Wang PW, Pan TL, Bazylak G, Leu YL.
J Ethnopharmacol (2009) 124(3): 463-74
BRK phosphorylates PSF promoting its cytoplasmic localization and cell cycle arrest
Lukong KE, Huot ME, Richard S.
Cell Signal (2009) 21(9): 1415-22
2-D DIGE analysis implicates cytoskeletal abnormalities in psychiatric disease
Jane A. English, Patrick Dicker, Melanie Fcking, Michael J. Dunn, David R. Cotter
PROTEOMICS (2009) 9(12): 3368-3382
Malaria sporozoite proteome leaves a trail
Vignali M, Speake C, Duffy PE.
Genome Biol (2009) 10(4): 216
Targeted tandem affinity purification of PSD-95 recovers core postsynaptic complexes and schizophrenia susceptibility proteins
Fernández E, Collins MO, Uren RT, Kopanitsa MV, Komiyama NH, Croning MD, Zografos L, Armstrong JD, Choudhary JS, Grant SG.
Mol Syst Biol (2009) 5: 269
The Nematode Resistance Allele at the rhg1 Locus Alters the Proteome and Primary Metabolism of Soybean Roots
Afzal AJ, Natarajan A, Saini N, Iqbal MJ, Geisler M, El Shemy HA, Mungur R, Willmitzer L, Lightfoot DA.
Plant Physiol Early Edition: published 8-May-2009
Proteomic analysis of Brucella suis under oxygen deficiency reveals flexibility in adaptive expression of various pathways
Sascha Al Dahouk, Sverine Loisel-Meyer, Holger C. Scholz, Herbert Tomaso, Michael Kersten, Alois Harder, Heinrich Neubauer, Stephan Khler, Vronique Jubier-Maurin
PROTEOMICS (2009) 9(11): 3011-3021
The human urinary proteome reveals high similarity between kidney aging and chronic kidney disease
Petra Zrbig, Stphane Decramer, Mohammed Dakna, Justyna Jantos, David M. Good, Joshua J. Coon, Flavio Bandin, Harald Mischak, Jean-Loup Bascands, Joost P. Schanstra
PROTEOMICS (2009) 9(8): 2108-2117
Molecular profiles of Quadriceps muscle in myostatin-null mice reveal PI3K and apoptotic pathways as myostatin targets
Chelh I, Meunier B, Picard B, Reecy JM, Chevalier C, Hocquette JF, Cassar-Malek I.
BMC Genomics (2009) 10(1): 196
Isatin binding proteins in rat brain: In situ imaging, quantitative characterization of specific [(3)H]isatin binding, and proteomic profiling
Crumeyrolle-Arias M, Buneeva O, Zgoda V, Kopylov A, Cardona A, Tournaire MC, Pozdnev V, Glover V, Medvedev A.
J Neurosci Res Early Edition: published 24-Apr-2009
Comparative proteomics analysis of caspase-9-protein complexes in untreated and cytochrome c/dATP stimulated lysates of NSCLC cells
Agnieszka Checinska, Giuseppe Giaccone, Jose A. Rodriguez, Frank A.E. Kruyt, Connie R. Jimenez
Journal of Proteomics (2009) 72(4): 575-585
Proteomic characterization of lipid raft proteins in amyotrophic lateral sclerosis mouse spinal cord
Zhai J, Ström AL, Kilty R, Venkatakrishnan P, White J, Everson WV, Smart EJ, Zhu H.
FEBS J (2009) 276(12): 3308-23
Chlamydomonas proteomics
Rolland N, Atteia A, Decottignies P, Garin J, Hippler M, Kreimer G, Lemaire SD, Mittag M, Wagner V.
Curr Opin Microbiol (2009) 12(3): 285-91
VASP is a CXCR2-interacting protein that regulates CXCR2-mediated polarization and chemotaxis
Neel NF, Barzik M, Raman D, Sobolik-Delmaire T, Sai J, Ham AJ, Mernaugh RL, Gertler FB, Richmond A.
J Cell Sci (2009) 122(Pt 11): 1882-94
Proteomic screening of variola virus reveals a unique NF-{kappa}B inhibitor that is highly conserved among pathogenic orthopoxviruses
Mohamed MR, Rahman MM, Lanchbury JS, Shattuck D, Neff C, Dufford M, van Buuren N, Fagan K, Barry M, Smith S, Damon I, McFadden G.
Proc Natl Acad Sci U S A (2009) 106(22): 9045-50
A Label-free Quantitative Proteomics Strategy to Identify E3 Ubiquitin Ligase Substrates Targeted to Proteasome Degradation
Clara F. Burande, Melina L. Heuze, Isabelle Lamsoul, Bernard Monsarrat, Sandrine Uttenweiler-Joseph, and Pierre G. Lutz
Mol Cell Proteomics (2009) 8(7): 1719-1727
Protein Profiling of Plasma Membranes Defines Aberrant Signaling Pathways in Mantle Cell Lymphoma
Robert S. Boyd, Rebekah Jukes-Jones, Renata Walewska, David Brown, Martin J. S. Dyer, and Kelvin Cain
Mol Cell Proteomics (2009) 8(7): 1501-1515
RecX is involved in the switch between DNA damage response and normal metabolism in D. radiodurans
Sheng D, Jao J, Li M, Xu P, Zhang J.
J Biochem Early Edition: published 14-May-2009
Functional Proteomic Analysis Predicts Beef Tenderness and the Tenderness Differential
Zapata I, Zerby HN, Wick M.
J Agric Food Chem (2009) 57(11): 4956-63
Identification of proteins co-purifying with scrapie infectivity
S. Petrakis, A. Malinowska, M. Dadlez, T. Sklaviadis
Journal of Proteomics (2009) 72(4): 690-694
Proteomic analysis of cell surface-associated proteins from probiotic Lactobacillus plantarum
Beck HC, Madsen SM, Glenting J, Petersen J, Israelsen H, Nørrelykke MR, Antonsson M, Hansen AM.
FEMS Microbiol Lett Early Edition: published 22-May-2009
Comparative analysis of 2,4,6-trinitrotoluene (TNT)-induced cellular responses and proteomes in Pseudomonas sp. HK-6 in two types of media
Cho YS, Lee BU, Kahng HY, Oh KH.
J Microbiol (2009) 47(2): 220-4
Microtubule interfering agents and KSP inhibitors induce the phosphorylation of the nuclear protein p54nrb, an event linked to G2/M arrest
Pedro Casado, Miguel A. Prado, Pedro Zuazua-Villar, Eva del Valle, Noelia Artime, Lucía Cabal-Hierro, Patricia Rupérez, Alma L. Burlingame, Pedro S. Lazo, Sofía Ramos
Journal of Proteomics (2009) 71(6): 592-600
Molecular interactions of the plasma membrane calcium ATPase PMCA2 at pre- and post-synaptic sites in rat cerebellum
Garside ML, Turner PR, Austen B, Strehler EE, Beesley PW, Empson RM.
Neuroscience (2009) 162(2): 383-395
Exercise training induces a cardioprotective phenotype and alterations in cardiac subsarcolemmal and intermyofibrillar mitochondrial proteins
Kavazis AN, Alvarez S, Talbert E, Lee Y, Powers SK.
Am J Physiol Heart Circ Physiol (2009) 297(1): H144-52
Altered gene and protein expression by Nm23-H1 in metastasis suppression
Lee JH, Marshall JC, Steeg PS, Horak CE.
Mol Cell Biochem Early Edition: published 5-May-2009
Genetic and proteomic evidence for roles of Drosophila SUMO in cell cycle control, Ras signaling, and early pattern formation
Nie M, Xie Y, Loo JA, Courey AJ.
PLoS One (2009) 4(6): e5905
Differential proteomic analysis of adrenal gland during postnatal development
Alberto Pascual, Antonio Romero-Ruiz, Jose Lopez-Barneo
PROTEOMICS (2009) 9(11): 2946-2954
Induced proteome of Trichoderma harzianum by Botrytis cinerea
Peng KC, Yang SL, Lo CT, Yang HH, Liu SY.
Mycol Res Early Edition: published 4-May-2009
Quantitation of glycogen synthase kinase-3 sensitive proteins in neuronal membrane rafts
Andrew J. Thompson, Ritchie Williamson, Emma Schofield, John Stephenson, Diane Hanger, Brian Anderton
PROTEOMICS (2009) 9(11): 3022-3035
A proteomic approach to the identification of molecular targets in subsequent apoptosis of HEL cells after diosgenin-induced megakaryocytic differentiation
Cailleteau C, Liagre B, Beneytout JL.
J Cell Biochem (2009) 107(4): 785-96
Proteomics and transcriptome approaches to investigate the mechanism of human sex determination
Sato Y, Shinka T, Chen G, Yan HT, Sakamoto K, Ewis AA, Aburatani H, Nakahori Y.
Cell Biol Int Early Edition: published 6-May-2009
Unbiased RNA-protein interaction screen by quantitative proteomics
Butter F, Scheibe M, Mörl M, Mann M.
Proc Natl Acad Sci U S A (2009) 106(26): 10626-31
A novel role for fatty acid transport protein 1 in the regulation of tricarboxylic acid cycle and mitochondrial function in 3T3-l1 adipocytes
Wiczer BM, Bernlohr DA.
J Lipid Res Early Edition: published 17-Jun-2009
Variation in protein levels obtained from human blood cells and biofluids for platelet, peripheral blood mononuclear cell, plasma, urine and saliva proteomics
Crosley LK, Duthie SJ, Polley AC, Bouwman FG, Heim C, Mulholland F, Horgan G, Johnson IT, Mariman EC, Elliott RM, Daniel H, de Roos B.
Genes Nutr (2009) 4(2): 95-102
Proteomic analysis of possible target-related proteins of cyclophosphamide in mice thymus
Ma C, Yue QX, Guan SH, Wu WY, Yang M, Jiang BH, Liu X, Guo DA.
Food Chem Toxicol Early Edition: published 4-May-2009
Studies on the venom proteome of Bothrops asper: perspectives and applications
Alape-Girón A, Flores-Díaz M, Sanz L, Madrigal M, Escolano J, Sasa M, Calvete JJ.
Toxicon Early Edition: published 16-Jun-2009
Isolation and identification of ubiquitin-related proteins from Arabidopsis seedlings
Igawa T, Fujiwara M, Takahashi H, Sawasaki T, Endo Y, Seki M, Shinozaki K, Fukao Y, Yanagawa Y.
J Exp Bot Early Edition: published 8-May-2009
Proteomic study of macrophages exposed to oxLDL identifies a CAPG polymorphism associated with carotid atherosclerosis
Burillo E, Recalde D, Jarauta E, Fiddyment S, Garcia-Otin AL, Mateo-Gallego R, Cenarro A, Civeira F.
Atherosclerosis Early Edition: published 16-Apr-2009
Isolation of Highly Enriched Apical Plasma Membranes of the Placental Syncytiotrophoblast
Robinson JM, Ackerman Iv WE, Tewari AK, Kniss DA, Vandre DD.
Anal Biochem Early Edition: published 18-Jan-2009
Effect of phosphorylated hsp27 on proliferation of human endothelial and smooth muscle cells
Deborah Trott, Ciara A. McManus, Jody L. Martin, Bryony Brennan, Michael J. Dunn, Marlene L. Rose
PROTEOMICS (2009) 9(12): 3383-3394
Myelin Proteomics: Molecular Anatomy of an Insulating Sheath
Jahn O, Tenzer S, Werner HB.
Mol Neurobiol (2009) 40(1): 55-72
Identification of uropathogenic Escherichia coli surface proteins by shotgun proteomics
Walters MS, Mobley HL.
J Microbiol Methods (2009) 78(2): 131-5
Iron depletion decreases proliferation and induces apoptosis in a human colonic adenocarcinoma cell line, Caco2
Sun X, Ge R, Cai Z, Sun H, He QY.
J Inorg Biochem (2009) 103(7): 1074-81
Multiple Motif Scanning to Identify Methyltransferases from the Yeast Proteome
Tanya C. Petrossian and Steven G. Clarke
Mol Cell Proteomics (2009) 8(7): 1516-1526
Heat shock protein 60 causes osteoclastic bone resorption via toll-like receptor-2 in estrogen deficiency
Koh JM, Lee YS, Kim YS, Park SH, Lee SH, Kim HH, Lee MS, Lee KU, Kim GS.
Bone Early Edition: published 12-Jun-2009
Proteomic studies of rat tibialis anterior muscle during postnatal growth and development
Sun H, Zhu T, Ding F, Hu N, Gu X.
Mol Cell Biochem Early Edition: published 25-Jun-2009
Impact of pancreatic cold preservation on rat islet recovery and function
Pileggi A, Ribeiro MM, Hogan AR, Molano RD, Cobianchi L, Ichii H, Embury J, Inverardi L, Fornoni A, Ricordi C, Pastori RL.
Transplantation (2009) 87(10): 1442-50
Proteome analysis of detergent resistant membranes (DRMs) associated with OsRac1 mediated innate immunity in rice
Fujiwara M, Hamada S, Hiratsuka M, Fukao Y, Kawasaki T, Shimamoto K.
Plant Cell Physiol (2009) 50(7): 1191-200
In Vivo Stable Isotope Labeling of Fruit Flies Reveals Post-transcriptional Regulation in the Maternal-to-zygotic Transition
Joost W. Gouw, Martijn W. H. Pinkse, Harmjan R. Vos, Yuri Moshkin, C. Peter Verrijzer, Albert J. R. Heck, and Jeroen Krijgsveld
Mol Cell Proteomics (2009) 8(7): 1566-1578
Differential Expression of Cytokines in Subcutaneous and Marrow Fat of Aging C57BL/6J Mice
Gasparrini M, Rivas D, Elbaz A, Duque G.
Exp Gerontol Early Edition: published 3-Jun-2009
Proteome response to Ochratoxin A-induced apoptotic cell death in mouse hippocampal HT22 cells
Yoon S, Cong WT, Bang YJ, Lee SN, Yoon CS, Lee KY, Choi JK, Choi HJ.
Neurotoxicology (2009) 30(4): 666-76
Proteomic analysis of cytoplasmic and surface proteins from yeast cells, hyphae, and biofilms of Candida albicans
Montserrat Martnez-Gomariz, Palani Perumal, Satish Mekala, Csar Nombela, W. LaJean Chaffin, Concha Gil
PROTEOMICS (2009) 9(8): 2230-2252
The Phosphoproteome of Bloodstream Form Trypanosoma brucei, Causative Agent of African Sleeping Sickness
Isabelle R. E. Nett, David M. A. Martin, Diego Miranda-Saavedra, Douglas Lamont, Jonathan D. Barber, Angela Mehlert, and Michael A. J. Ferguson
Mol Cell Proteomics (2009) 8(7): 1527-1538
Proteomic analysis of the rat ovary following chronic low-dose exposure to 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD)
Chen X, Ma XM, Ma SW, Coenraads PJ, Zhang CM, Liu J, Zhao LJ, Sun M, Tang NJ.
J Toxicol Environ Health A (2009) 72(11): 717-26
The hemolymph proteome of the honeybee: Gel-based or gel-free?
Annelies Bogaerts, Geert Baggerman, Evy Vierstraete, Liliane Schoofs, Peter Verleyen
PROTEOMICS (2009) 9(11): 3201-3208
Comparison of methods for simultaneous identification of bacterial species and determination of metabolic activity by protein-based stable isotope probing (Protein-SIP) experiments
Jehmlich N, Schmidt F, Taubert M, Seifert J, von Bergen M, Richnow HH, Vogt C.
Rapid Commun Mass Spectrom (2009) 23(12): 1871-8
Aging defined by a chronologic-replicative protein network in Saccharomyces cerevisiae: An interactome analysis
Barea F, Bonatto D.
Mech Ageing Dev (2009) 130(7): 444-60
Induction of S100A4, S100A6, and galectin-1 during the lineage commitment of CD4+CD8+ thymocyte cell line is suppressed by 2,3,7,8-tetrachlorodibenzo-p-dioxin
Jeon CH, Kim HL, Park JH.
Toxicol Lett (2009) 187(3): 157-63
Identification of the Molecular Composition of the 20S Proteasome of Mouse Intestine by High-Resolution Mass Spectrometric Proteome Analysis
Weber R, Preywisch R, Youhnovski N, Groettrup M, Przybylski M.
Methods Mol Biol (2009) 564: 173-86
In vitro nuclear interactome of the HIV-1 Tat protein
Gautier VW, Gu L, O'Donoghue N, Pennington S, Sheehy N, Hall WW.
Retrovirology (2009) 6(1): 47
Comparative Proteome Analysis of Splenic Lymphocytes in Senescence-Accelerated Mice
Luo Y, Li Y, Lin C, Ma H, Zhang J, Wu S, Wang X, Gao Y, Liu Y, Zheng D.
Gerontology Early Edition: published 18-Jun-2009
Proteomic identification and profiling of canine lymphoma patients
Ratcliffe L, Mian S, Slater K, King H, Napolitano M, Aucoin D, Mobasheri A.
Vet Comp Oncol (2009) 7(2): 92-105
Mapping of O-linked ?-N-acetylglucosamine modification sites in key contractile proteins of rat skeletal muscle
Julie Hdou, Bruno Bastide, Adeline Page, Jean-Claude Michalski, Willy Morelle
PROTEOMICS (2009) 9(8): 2139-2148
Baicalin administration is effective in positive regulation of twenty-four ischemia/reperfusion-related proteins identified by a proteomic study
Zhang Z, Wu R, Li P, Liu F, Zhang W, Zhang P, Li P, Wang Y.
Neurochem Int (2009) 54(8): 488-96
Proteomic Profiling Of Snake Venom Metalloproteinases (Svmps): Insights Into Venom Induced Pathology
Terra RM, Pinto AF, Guimarães JA, Fox JW.
Toxicon Early Edition: published 16-Jun-2009
Proteomic analysis of kidney in rats chronically exposed to fluoride
Kobayashi CA, Leite AL, Silva TL, Santos LD, Nogueira FC, Oliveira RC, Palma MS, Domont GB, Buzalaf MA.
Chem Biol Interact (2009) 180(2): 305-311
Insights into Mesenchymal Stem Cell Aging: Involvement of Antioxidant Defense and Actin Cytoskeleton
Kasper G, Mao L, Geissler S, Draycheva A, Trippens J, Kühnisch J, Tschirschmann M, Kaspar K, Perka C, Duda GN, Klose J.
Stem Cells (2009) 27(6): 1288-1297
Use of Reducing/Nonreducing Two-Dimensional Electrophoresis for the Study of Disulfide-Mediated Interactions between Proteins in Raw and Heated Bovine Milk
Chevalier F, Hirtz C, Sommerer N, Kelly AL.
J Agric Food Chem (2009) 57(13): 5948-55
Isolation and proteomic analysis of the halotolerant alga Dunaliella salina flagella using shotgun strategy
Jia Y, Xue L, Li J, Liu H.
Mol Biol Rep Early Edition: published 13-May-2009
Sex-dependent compensated oxidative stress in the mouse liver upon deletion of catechol O-methyltransferase
Tenorio-Laranga J, Männistö PT, Karayiorgou M, Gogos JA, García-Horsman JA.
Biochem Pharmacol (2009) 77(9): 1541-52
Identification of uranyl binding proteins from human kidney-2 cell extracts by immobilized uranyl affinity chromatography and mass spectrometry
Dedieu A, Bérenguer F, Basset C, Prat O, Quéméneur E, Pible O, Vidaud C.
J Chromatogr A (2009) 1216(28): 5365-76
A major lipid raft protein raftlin modulates T cell receptor signaling and enhances th17-mediated autoimmune responses
Saeki K, Fukuyama S, Ayada T, Nakaya M, Aki D, Takaesu G, Hanada T, Matsumura Y, Kobayashi T, Nakagawa R, Yoshimura A.
J Immunol (2009) 182(10): 5929-37
Differential expression of the skeletal muscle proteome in grazed cattle
Shibata M, Matsumoto K, Oe M, Ohnishi-Kameyama M, Ojima K, Nakajima I, Muroya S, Chikuni K.
J Anim Sci Early Edition: published 6-May-2009
Alteration of growth-phase-dependent protein regulation by a fur mutation in Helicobacter pylori
Choi YW, Park SA, Lee HW, Lee NG.
FEMS Microbiol Lett (2009) 294(1): 102-110
Vpu Directs the Degradation of the HIV Restriction Factor BST-2/tetherin via a {beta}TrCP-dependent Mechanism
Douglas JL, Viswanathan K, McCarroll MN, Gustin JK, Früh K, Moses AV.
J Virol (2009) 83(16): 7931-47
Insights into female sperm storage from the spermathecal fluid proteome of the honeybee Apis mellifera
Baer B, Eubel H, Taylor NL, O'Toole N, Millar AH.
Genome Biol (2009) 10(6): R67
Proteomic Analysis Reveals Multiple Patterns of Response in Cells Exposed to a Toxin Mixture
Sala GL, Ronzitti G, Sasaki M, Fuwa H, Yasumoto T, Bigiani A, Rossini GP.
Chem Res Toxicol (2009) 22(6): 1077-85
A Proteomics Analysis of the Effects of Chronic Hemiparetic Stroke on Troponin T Expression in Human Vastus Lateralis
Rabek JP, Hafer-Macko CE, Amaning JK, Deford JH, Dimayuga VL, Madsen MA, Macko RF, Papaconstantinou J.
J Gerontol A Biol Sci Med Sci (2009) 64(8): 839-49
Pathogenesis and stress related, as well as metabolic proteins are regulated in tomato stems infected with Ralstonia solanacearum
Dahal D, Heintz D, Van Dorsselaer A, Braun HP, Wydra K.
Plant Physiol Biochem (2009) 47(9): 838-46
Community genomic and proteomic analysis of chemoautotrophic, iron-oxidizing "Leptospirillum rubarum" (Group II) and Leptospirillum ferrodiazotrophum (Group III) in acid mine drainage biofilms
Goltsman DS, Denef VJ, Singer SW, Verberkmoes NC, Lefsrud M, Mueller R, Dick GJ, Sun C, Wheeler K, Zemla A, Baker BJ, Hauser L, Land M, Shah MB, Thelen MP, Hettich RL, Banfield JF.
Appl Environ Microbiol (2009) 75(13): 4599-615
Snapshot Peptidomics of the Regulated Secretory Pathway
Kazuki Sasaki, Yoshinori Satomi, Toshifumi Takao, and Naoto Minamino
Mol Cell Proteomics (2009) 8(7): 1638-1647
Toxoplasma gondii: Proteomic analysis of antigenicity of soluble tachyzoite antigen
Ma GY, Zhang JZ, Yin GR, Zhang JH, Meng XL, Zhao F.
Exp Parasitol Early Edition: published 29-Jan-2009
Identification of phosphorylated proteins in erythrocytes infected by the human malaria parasite Plasmodium falciparum
Wu Y, Nelson MM, Quaile A, Xia D, Wastling JM, Craig A.
Malar J (2009) 8(1): 105
Proteome changes in the plasma of Papilio xuthus (Lepidoptera: Papilionidae): effect of parasitization by the endoparasitic wasp Pteromalus puparum (Hymenoptera: Pteromalidae)
Zhu JY, Ye GY, Fang Q, Hu C.
J Zhejiang Univ Sci B (2009) 10(6): 445-53
Novel insights into phenotype and mitochondrial proteome of yeast mutants lacking proteins Sco1p or Sco2p
Gamberi T, Magherini F, Borro M, Gentile G, Cavalieri D, Marchi E, Modesti A.
Mitochondrion (2009) 9(2): 103-14
Selective recruitment of proteins to 5' cap complexes during the growth cycle in Arabidopsis
Bush MS, Hutchins AP, Jones AM, Naldrett MJ, Jarmolowski A, Lloyd CW, Doonan JH.
Plant J Early Edition: published 7-May-2009
The heat shock cognate protein 70 is associated with hepatitis C virus particles and modulates virus infectivity
Parent R, Qu X, Petit MA, Beretta L.
Hepatology (2009) 49(6): 1798-809
Protein phosphatase 2Cm is a critical regulator of branched-chain amino acid catabolism in mice and cultured cells
Lu G, Sun H, She P, Youn JY, Warburton S, Ping P, Vondriska TM, Cai H, Lynch CJ, Wang Y.
J Clin Invest (2009) 119(6): 1678-87
Large-scale Proteomics Analysis of the Human Kinome
Felix S. Oppermann, Florian Gnad, Jesper V. Olsen, Renate Hornberger, Zoltan Greff, Gyorgy Keri, Matthias Mann, and Henrik Daub
Mol Cell Proteomics (2009) 8(7): 1751-1764
Proteomics identification and annotation of proteins of cell line of Bombyx mori, BmN cell
Yao HP, Chen L, Xiang X, Guo AQ, Lu XM, Wu XF.
Biosci Rep Early Edition: published 4-Jun-2009
Proteomic profiling of human embryonic stem cell-derived microvesicles reveals a risk of transfer of proteins of bovine and mouse origin
Kubikova I, Konecna H, Sedo O, Zdrahal Z, Rehulka P, Hribkova H, Rehulkova H, Hampl A, Chmelik J, Dvorak P.
Cytotherapy (2009) 11(3): 330-40, 1 p following 340
Tissue-Specific Remodeling of the Mitochondrial Proteome in Type 1 Diabetic Akita Mice
Bugger H, Chen D, Riehle C, Soto J, Theobald HA, Hu XX, Ganesan B, Weimer BC, Abel ED.
Diabetes Early Edition: published 19-Jun-2009
Influence of red clover (Trifolium pratense) isoflavones on gene and protein expression profiles in liver of ovariectomized rats
Pakalapati G, Li L, Gretz N, Koch E, Wink M.
Phytomedicine Early Edition: published 29-Apr-2009
Quantitative methods for food allergens: a review
Kirsch S, Fourdrilis S, Dobson R, Scippo ML, Maghuin-Rogister G, De Pauw E.
Anal Bioanal Chem Early Edition: published 19-Jun-2009
Ubiquitination and cysteine nitrosylation during aging and Alzheimer's disease
Riederer IM, Schiffrin M, Kövari E, Bouras C, Riederer BM.
Brain Res Bull Early Edition: published 6-May-2009
Quantitative measurement of specific biomarkers for protein oxidation, nitration and glycation in Arabidopsis leaves
Bechtold U, Rabbani N, Mullineaux PM, Thornalley PJ.
Plant J Early Edition: published 25-Apr-2009
Characterisation of the CipC-like protein AFUA_5G09330 of the opportunistic human pathogenic mould Aspergillus fumigatus
Bauer B, Schwienbacher M, Broniszewska M, Israel L, Heesemann J, Ebel F.
Mycoses Early Edition: published 22-May-2009
Targeted serum glycoproteomics for the discovery of lung cancer-associated glycosylation disorders using lectin-coupled ProteinChip arrays
Koji Ueda, Yu Fukase, Toyomasa Katagiri, Nobuhisa Ishikawa, Shinji Irie, Taka-Aki Sato, Hiroyuki Ito, Haruhiko Nakayama, Yohei Miyagi, Eiju Tsuchiya, Nobuoki Kohno, Mieko Shiwa, Yusuke Nakamura, Yataro Daigo
PROTEOMICS (2009) 9(8): 2182-2192
Quantification of Milk Fat Globule Membrane Proteins Using Selected Reaction Monitoring Mass Spectrometry
Fong BY, Norris CS.
J Agric Food Chem (2009) 57(14): 6021-8
Proteomic identification of differentially expressed plasma membrane proteins in renal cell carcinoma by stable isotope labelling of a von Hippel-Lindau transfectant cell line model
Vassilis Aggelis, Rachel A. Craven, Jianhe Peng, Patricia Harnden, David A. Cairns, Eamonn R. Maher, Robert Tonge, Peter J. Selby, Rosamonde E. Banks
PROTEOMICS (2009) 9(8): 2118-2130
A systematic proteomic study of irradiated DNA repair deficient Nbn-mice
Melchers A, Stöckl L, Radszewski J, Anders M, Krenzlin H, Kalischke C, Scholz R, Jordan A, Nebrich G, Klose J, Sperling K, Digweed M, Demuth I.
PLoS ONE (2009) 4(5): e5423
Comparative assessment of large-scale proteomic studies of apoptotic proteolysis
Simon G, Dix MM, Cravatt BF.
ACS Chem Biol (2009) 4(6): 401-8
Proteomic analysis of the human receptive versus non-receptive endometrium using differential in-gel electrophoresis and MALDI-MS unveils stathmin 1 and annexin A2 as differentially regulated
Domínguez F, Garrido-Gómez T, López JA, Camafeita E, Quiñonero A, Pellicer A, Simón C.
Hum Reprod Early Edition: published 25-Jun-2009
Comparative proteomic profiles of the hepatopancreas in Fenneropenaeus chinensis response to hypoxic stress
Hao Jiang, Fuhua Li, Yusu Xie, Bingxin Huang, Jinkang Zhang, Jiquan Zhang, Chengsong Zhang, Shihao Li, Jianhai Xiang
PROTEOMICS (2009) 9(12): 3353-3367
Analyses of the Proteomes of the Leaf, Hypocotyl, and Root of Young Soybean Seedlings
Afroz A, Hashiguchi A, Khan R, Komatsu S.
Protein Pept Lett Early Edition: published 10-Nov-2009
Proteome analysis of aerobically and anaerobically grown Saccharomyces cerevisiae cells
Astrid Bruckmann, Paul J. Hensbergen, Crina I.A. Balog, Andre M. Deelder, Raymond Brandt, I.S. Ishtar Snoek, H. Yde Steensma, G. Paul H. van Heusden
Journal of Proteomics (2009) 71(6): 662-669
Arginine Kinase Peptide Mass Fingerprinting as a Proteomic Approach for Species Identification and Taxonomic Analysis of Commercially Relevant Shrimp Species
Ortea I, Cañas B, Calo-Mata P, Barros-Velázquez J, Gallardo JM.
J Agric Food Chem (2009) 57(13): 5665-72
Plasticity of the Muscle Proteome to Exercise at Altitude
Flueck M.
High Alt Med Biol (2009) 10(2): 183-93
Immunization with inflammatory proteome of Brugia malayi adult worm induces a Th1/Th2- immune response and confers protection against the filarial infection
Sahoo MK, Sisodia BS, Dixit S, Joseph SK, Gaur RL, Verma SK, Verma AK, Shasany AK, Dowle AA, Murthy PK.
Vaccine (2009) 27(32): 4263-71
Proteomic insights into adaptive responses of Saccharomyces cerevisiae to the repeated vacuum fermentation
Cheng JS, Zhou X, Ding MZ, Yuan YJ.
Appl Microbiol Biotechnol (2009) 83(5): 909-23
Transcriptomic and Proteomic Analysis of Global Ischemia and Cardioprotection in the Rabbit Heart
McCully JD, Bhasin MK, Daly C, Guerrero MC, Dillon S, Liberman TA, Cowan DB, Mably JD, McGowan FX, Levitsky S.
Physiol Genomics (2009) 38(2): 125-37
Accumulation of Large Protein Fragments in Prematurely Senescent ARPE-19 Cells
Liao WL, Turko IV.
Invest Ophthalmol Vis Sci Early Edition: published 20-May-2009
Proteomic studies of a single CNS synapse type: the parallel fiber/purkinje cell synapse
Selimi F, Cristea IM, Heller E, Chait BT, Heintz N.
PLoS Biol (2009) 7(4): e83
Identification of Novel Immunodominant Epididymal Sperm Proteins using Combinatorial Approach
Khan S, Suryawanshi A, Ranpura S, Jadhav S, Khole V.
Reproduction (2009) 138(1): 81-93
The Pseudomonas putida Crc global regulator controls the hierarchical assimilation of amino acids in a complete medium: Evidence from proteomic and genomic analyses
Renata Moreno, Montserrat Martnez-Gomariz, Luis Yuste, Concha Gil, Fernando Rojo
PROTEOMICS (2009) 9(11): 2910-2928
Differential Protein Expression by Dendritic Cells from Atopic and Non-Atopic Individuals after Stimulation by the Major House Dust Mite Allergen Der p 1
Horlock C, Shakib F, Jones NS, Sewell HF, Ghaemmaghami AM.
Int Arch Allergy Immunol (2009) 150(3): 237-251
The mitochondrial proteome database: MitoP2
Elstner M, Andreoli C, Klopstock T, Meitinger T, Prokisch H.
Methods Enzymol (2009) 457: 3-20
The power of functional proteomics: Components of the green algal eyespot and its light signaling pathway(s)
Wagner V, Kreimer G, Mittag M.
Plant Signal Behav (2008) 3(7): 433-5
The winter ulcer bacterium Moritella viscosa demonstrates adhesion and cytotoxicity in a fish cell model
Tunsjø HS, Paulsen SM, Berg K, Sørum H, L'abee-Lund TM.
Microb Pathog Early Edition: published 15-Jun-2009
Proteomic analysis of the response of the plant growth-promoting bacterium Pseudomonas putida UW4 to nickel stress
Cheng Z, Wei YY, Sung WW, Glick BR, McConkey BJ.
Proteome Science (2009) 7(1): 18
Bacterial consortium proteomics under 4-chlorosalicylate carbon-limiting conditions
Roberto A. Bobadilla Fazzini, Agata Bielecka, Ana K. Poucas Quintas, Peter N. Golyshin, Maria J. Preto, Kenneth N. Timmis, Vitor A. P. Martins dos Santos
PROTEOMICS (2009) 9(8): 2273-2285
Endothelial targeting of cowpea mosaic virus (CPMV) via surface vimentin
Koudelka KJ, Destito G, Plummer EM, Trauger SA, Siuzdak G, Manchester M.
PLoS Pathog (2009) 5(5): e1000417
Profile of exosomes related proteins released by differentiated and undifferentiated human keratinocytes
Chavez-Muñoz C, Kilani RT, Ghahary A.
J Cell Physiol (2009) 221(1): 221-31
Proteomic analysis of lung tissue of rats exposed to cigarette smoke and radon
Xu NY, Zhang SP, Dong L, Nie JH, Tong J.
J Toxicol Environ Health A (2009) 72(11): 752-8
Dehydration-responsive Nuclear Proteome of Rice (Oryza sativa L.) Illustrates Protein Network, Novel Regulators of Cellular Adaptation, and Evolutionary Perspective
Mani Kant Choudhary, Debarati Basu, Asis Datta, Niranjan Chakraborty, and Subhra Chakraborty
Mol Cell Proteomics (2009) 8(7): 1579-1598
The Ubiquitin Specific Peptidase USP15 Regulates Human Papilloma Virus 16 E6 Protein Stability
Vos RM, Altreuter J, White EA, Howley PM.
J Virol Early Edition: published 24-Jun-2009
Proteomics analyses reveal the evolutionary conservation and divergence of N-terminal acetyltransferases from yeast and humans
Arnesen T, Van Damme P, Polevoda B, Helsens K, Evjenth R, Colaert N, Varhaug JE, Vandekerckhove J, Lillehaug JR, Sherman F, Gevaert K.
Proc Natl Acad Sci U S A (2009) 106(20): 8157-62
Characterization of chemokine receptor CXCR2 interacting proteins using a proteomics approach to define the CXCR2 "chemosynapse"
Raman D, Neel NF, Sai J, Mernaugh RL, Ham AJ, Richmond AJ.
Methods Enzymol (2009) 460: 315-30
Gene and protein expression profiles in the foetal liver of the pregnant rat fed a low protein diet
McNeil CJ, Hay SM, Rucklidge GJ, Reid MD, Duncan GJ, Rees WD.
Genes Nutr Early Edition: published 30-May-2009
Apratoxin A reversibly inhibits the secretory pathway by preventing cotranslational translocation
Liu Y, Law BK, Luesch H.
Mol Pharmacol (2009) 76(1): 91-104
Identification of a serodiagnostic antigen, legumain, by immunoproteomic analysis of excretory-secretory products of Clonorchis sinensis adult worms
Jung-Won Ju, Hyun-Na Joo, Myoung-Ro Lee, Shin-Hyeong Cho, Hyeng-Il Cheun, Jung-Yeon Kim, Young-Hee Lee, Kwang-Jun Lee, Woon-Mok Sohn, Dong-Min Kim, Il-Chul Kim, Byoung Chul Park, Tong-Soo Kim
PROTEOMICS (2009) 9(11): 3066-3078
Quantitative analysis of cellular proteome alterations in human influenza A virus-infected mammalian cell lines
Diana Vester, Erdmann Rapp, Drte Gade, Yvonne Genzel, Udo Reichl
PROTEOMICS (2009) 9(12): 3316-3327
Proteomic Analysis of DNA-Protein Cross-Linking by Antitumor Nitrogen Mustards
Loeber RL, Michaelson-Richie ED, Codreanu SG, Liebler DC, Campbell CR, Tretyakova NY.
Chem Res Toxicol (2009) 22(6): 1151-62
Identification of LOXL1 protein and Apolipoprotein E as components of surgically isolated pseudoexfoliation material by direct mass spectrometry
Sharma S, Chataway T, Burdon KP, Jonavicius L, Klebe S, Hewitt AW, Mills RA, Craig JE.
Exp Eye Res Early Edition: published 11-May-2009
Combined snake venomics and venom gland transcriptomic analysis of the ocellated carpet viper, Echis ocellatus
Simon C. Wagstaff, Libia Sanz, Paula Juárez, Robert A. Harrison, Juan J. Calvete
Journal of Proteomics (2009) 71(6): 609-623
Biomarker discovery in asthma-related inflammation and remodeling
Florence Quesada Calvo, Marianne Fillet, Dominique de Seny, Marie-Alice Meuwis, Raphael Maree, Cline Crahay, Genevive Paulissen, Natacha Rocks, Maud Gueders, Louis Wehenkel, Marie-Paule Merville, Renaud Louis, Jean-Michel Foidart, Agnes Nol, Didier Cataldo
PROTEOMICS (2009) 9(8): 2163-2170
Light induced changes in protein expression and uniform regulation of transcription in the thylakoid lumen of Arabidopsis thaliana
Granlund I, Hall M, Kieselbach T, Schröder WP.
PLoS ONE (2009) 4(5): e5649
Identification of proteomic changes during human liver development by 2D-DIGE and mass spectrometry
Brizard JP, Ramos J, Robert A, Lafitte D, Bigi N, Sarda P, Laoudj-Chenivesse D, Navarro F, Blanc P, Assenat E, Maurel P, Pascussi JM, Vilarem MJ.
J Hepatol (2009) 51(1): 114-26
Proteomic discovery of previously unannotated, rapidly evolving seminal fluid genes in Drosophila
Findlay GD, Maccoss MJ, Swanson WJ.
Genome Res (2009) 19(5): 886-96
Components of the E. coli envelope are affected by and can react to protein over-production in the cytoplasm
Villa R, Lotti M, Gatti-Lafranconi P.
Microb Cell Fact (2009) 8(1): 32
Novel Antimicrobial Peptides Isolated from Skin Secretions of the Mexican Frog Hyla Eximia
Villa-Hernández O, Hernández-Orihuela L, Del Carmen Rodríguez M, Zamudio-Zuñiga F, Castro-Franco R, Pando V, Batista CV.
Protein Pept Lett Early Edition: published 10-Sep-2009
Identification of Bacterial Proteins Mediating the Interactions Between Pseudomonas putida UW4 and Brassica napus (Canola)
Cheng Z, Duan J, Hao Y, McConkey BJ, Glick BR.
Mol Plant Microbe Interact (2009) 22(6): 686-94
Comparative proteomic analysis of cell cycle-dependent apoptosis induced by transforming growth factor-beta
Tian HY, Zhang KH, Gao X, Lei WW, Zhang L, Yu ML, Song JG, Zhao FK.
Biochim Biophys Acta Early Edition: published 15-May-2009
Oxalic acid-mediated stress responses in Brassica napus L
Yue Liang, Stephen E. Strelkov, Nat N. V. Kav
PROTEOMICS (2009) 9(11): 3156-3173
Signaling pathway adaptations and novel protein kinase A substrates related to behavioral sensitization to cocaine
Boudreau AC, Ferrario CR, Glucksman MJ, Wolf ME.
J Neurochem (2009) 110(1): 363-77
Extracellular proteomic analysis for degradation of PAHs in source of drinking water with fusant strains
Wu B, Zhang X, Zhang Y, Zhao D, Cui Y, Cheng S.
Ecotoxicology (2009) 18(6): 736-41
The ubiquitin-26S proteasome system at the nexus of plant biology
Vierstra RD.
Nat Rev Mol Cell Biol Early Edition: published 8-May-2009
Proteomics Approach to Identify Unique Xylem Sap Proteins in Pierce's Disease-Tolerant Vitis Species
Basha SM, Mazhar H, Vasanthaiah HK.
Appl Biochem Biotechnol Early Edition: published 2-May-2009
Temporal and spatial profiling of nuclei-associated proteins upon TNF-alpha/NF-kappaB signaling
Ma DJ, Li SJ, Wang LS, Dai J, Zhao SL, Zeng R.
Cell Res (2009) 19(5): 651-64
Transcriptome and proteome analysis of ovaries of arrhenotokous and thelytokous Venturia canescens
Mateo Leach I, Hesseling A, Huibers WH, Witsenboer H, Beukeboom LW, van de Zande L.
Insect Mol Biol (2009) 18(4): 477-82
Proteome analysis of rice root plasma membrane and detection of cold stress responsive proteins
Hashimoto M, Toorchi M, Matsushita K, Iwasaki Y, Komatsu S.
Protein Pept Lett (2009) 16(6): 685-97
Proteome analysis of the xylose-fermenting mutant yeast strain TMB 3400
Karhumaa K, Påhlman AK, Hahn-Hägerdal B, Levander F, Gorwa-Grauslund MF.
Yeast (2009) 26(7): 371-82
Comprehensive proteomic and transcriptomic analysis reveals early induction of a protective anti-oxidative stress response by low-dose proteasome inhibition
Sven Bieler, Silke Meiners, Verena Stangl, Thomas Pohl, Karl Stangl
PROTEOMICS (2009) 9(12): 3257-3267
Defining the transcriptomic and proteomic profiles of rat ageing skeletal muscle by the use of a cDNA array, 2D- and Blue native-PAGE approach
A. Lombardi, E. Silvestri, F. Cioffi, R. Senese, A. Lanni, F. Goglia, P. de Lange, M. Moreno
Journal of Proteomics (2009) 72(4): 708-721
Parvulin (Par14), a Peptidyl-Prolyl cis-trans Isomerase, Is a Novel rRNA Processing Factor That Evolved in the Metazoan Lineage
Sally Fujiyama-Nakamura, Harunori Yoshikawa, Keiichi Homma, Toshiya Hayano, Teruko Tsujimura-Takahashi, Keiichi Izumikawa, Hideaki Ishikawa, Naoki Miyazawa, Mitsuaki Yanagida, Yutaka Miura, Takashi Shinkawa, Yoshio Yamauchi, Toshiaki Isobe, and Nobuhiro Takahashi
Mol Cell Proteomics (2009) 8(7): 1552-1565
Spliceosomal proteomics in Trypanosoma brucei revealed new RNA splicing factors
Luz Ambrósio D, Lee JH, Panigrahi AK, Nguyen TN, Cicarelli RM, Günzl A.
Eukaryot Cell (2009) 8(7): 990-1000
Proteomic analysis of cells exposed to prefibrillar aggregates of HypF-N
Magherini F, Pieri L, Guidi F, Giangrande C, Amoresano A, Bucciantini M, Stefani M, Modesti A.
Biochim Biophys Acta (2009) 1794(8): 1243-50
Elucidation of Thioredoxin Target Protein Networks in Mouse
Cexiong Fu, Changgong Wu, Tong Liu, Tetsuro Ago, Peiyong Zhai, Junichi Sadoshima, and Hong Li
Mol Cell Proteomics (2009) 8(7): 1674-1687
Camptothecin-Induced Cell Proliferation Inhibition and Apoptosis Enhanced by DNA Methyltransferase Inhibitor, 5-Aza-2'-deoxycytidine
Ding L, Qiu L, Zhang J, Guo B.
Biol Pharm Bull (2009) 32(6): 1105-8
Novel Hsp90 partners discovered using complementary proteomic approaches
Tsaytler PA, Krijgsveld J, Goerdayal SS, Rüdiger S, Egmond MR.
Cell Stress Chaperones Early Edition: published 26-Apr-2009
Unraveling the protective effect of a Drosophila phosphatidylethanolamine-binding protein upon bacterial infection by means of proteomics
Reumer A, Bogaerts A, Van Loy T, Husson SJ, Temmerman L, Choi C, Clynen E, Hassan B, Schoofs L.
Dev Comp Immunol Early Edition: published 19-Jun-2009
Discrete molecular states in the brain accompany changing responses to a vocal signal
Dong S, Replogle KL, Hasadsri L, Imai BS, Yau PM, Rodriguez-Zas S, Southey BR, Sweedler JV, Clayton DF.
Proc Natl Acad Sci U S A (2009) 106(27): 11364-9
Proteomic changes in the crucian carp brain during exposure to anoxia
Richard W. Smith, Phil Cash, Stian Ellefsen, Gran E. Nilsson
PROTEOMICS (2009) 9(8): 2217-2229
Congenital lack of nNOS impairs long-term social recognition memory and alters the olfactory bulb proteome
Jüch M, Smalla KH, Kähne T, Lubec G, Tischmeyer W, Gundelfinger ED, Engelmann M.
Neurobiol Learn Mem Early Edition: published 13-Jun-2009
Physiological and proteomic responses of two contrasting Populus cathayana populations to drought stress
Xiao X, Yang F, Zhang S, Korpelainen H, Li C.
Physiol Plant (2009) 136(2): 150-68
Tiger frog virus can infect zebrafish cells for studying up- or down-regulated genes by proteomics approach
Luo Y, Weng S, Wang Q, Shi X, Dong C, Lu Q, Yu X, He J.
Virus Res Early Edition: published 29-Apr-2009
Proteomic Analysis of the Luteal Endometrial Secretome
Scotchie JG, Fritz MA, Mocanu M, Lessey BA, Young SL.
Reprod Sci Early Edition: published 3-Jun-2009
Multiplexed LC-MS/MS analysis of horse plasma proteins to study doping in sport
Chris Barton, Paul Beck, Richard Kay, Phil Teale, Jane Roberts
PROTEOMICS (2009) 9(11): 3058-3065
Comparative proteomic analysis of Arabidopsis mature pollen and germinated pollen
Zou J, Song L, Zhang W, Wang Y, Ruan S, Wu WH.
J Integr Plant Biol (2009) 51(5): 438-55
Proteolytic Fragments of Chromogranins A and B Represent Major Components of Chromaffin Granules, Illustrated by 2-D Proteomics with NH2-Terminal Edman Peptide Sequencing and MALDI-TOF MS
Lee JC, Hook VY.
Biochemistry (2009) 48(23): 5254-62
Proteomics of the photoneuroendocrine circadian system of the brain
Møller M, Lund-Andersen C, Rovsing L, Sparre T, Bache N, Roepstorff P, Vorum H.
Mass Spectrom Rev Early Edition: published 12-May-2009
Protein profiling of low-density lipoprotein from obese subjects
Helen Karlsson, Harriet Mrtstedt, Helen Lindqvist, Christer Tagesson, Mats Lindahl
PROTEOMICS - CLINICAL APPLICATIONS (2009) 3(6): 663-671
Generally detected proteins in comparative proteomics - A matter of cellular stress response?
Ping Wang, Freek G. Bouwman, Edwin C. M. Mariman
PROTEOMICS (2009) 9(11): 2955-2966
Shotgun redox proteomics identifies specifically modified cysteines in key metabolic enzymes under oxidative stress in Saccharomyces cerevisiae
Brian McDonagh, Samuel Ogueta, Guillermo Lasarte, C. Alicia Padilla, José Antonio Bárcena
Journal of Proteomics (2009) 72(4): 677-689
Identification of Novel SHPS-1-associated Proteins and Their Roles in Regulation of Insulin-like Growth Factor-dependent Responses in Vascular Smooth Muscle Cells
Xinchun Shen, Gang Xi, Yashwanth Radhakrishnan, and David R. Clemmons
Mol Cell Proteomics (2009) 8(7): 1539-1551
The seminal fluid proteome of the honeybee Apis mellifera
Boris Baer, Joshua L. Heazlewood, Nicolas L. Taylor, Holger Eubel, A. Harvey Millar
PROTEOMICS (2009) 9(8): 2085-2097
Exploring rat plasmatic proteomes: what triggered the liver regeneration?
Deng XY, Li WR, Sun YW, Wei HD, Jiang Y, He FC.
Protein Pept Lett (2009) 16(6): 698-705
Biomarker discovery in subclinical mycobacterial infections of cattle
Seth M, Lamont EA, Janagama HK, Widdel A, Vulchanova L, Stabel JR, Waters WR, Palmer MV, Sreevatsan S.
PLoS ONE (2009) 4(5): e5478
New changes in the plasma-membrane-associated proteome of rice roots under salt stress
Yanwei Cheng, Yaocheng Qi, Qian Zhu, Xi Chen, Ning Wang, Xin Zhao, Haiyan Chen, Xiangju Cui, Langlai Xu, Wei Zhang
PROTEOMICS (2009) 9(11): 3100-3114
Proteomic analysis of Legionella-containing phagosomes isolated from Dictyostelium
Shevchuk O, Batzilla C, Hägele S, Kusch H, Engelmann S, Hecker M, Haas A, Heuner K, Glöckner G, Steinert M.
Int J Med Microbiol Early Edition: published 22-May-2009
Differential proteome analysis of porcine skeletal muscles between Meishan and Large White
Xu YJ, Jin ML, Wang LJ, Zhang AD, Zuo B, Xu DQ, Ren ZQ, Lei MG, Mo XY, Li FE, Zheng R, Deng CY, Xiong YZ.
J Anim Sci Early Edition: published 6-May-2009
Isoform-specific expression and characterization of 14-3-3 proteins in human glioma tissues discovered by stable isotope labeling with amino acids in cell culture-based proteomic analysis
Shufang Liang, Guobo Shen, Qingping Liu, Yuhuan Xu, Liangxue Zhou, Shiyin Xiao, Zhizhong Xu, Fengming Gong, Chao You, Yuquan Wei
PROTEOMICS - CLINICAL APPLICATIONS (2009) 3(6): 743-753
Proteomic Approach to FcepsilonRI aggregation-initiated signal transduction cascade in human mast cells
Yamaoka K, Okayama Y, Kaminuma O, Katayama K, Mori A, Tatsumi H, Nemoto S, Hiroi T.
Int Arch Allergy Immunol (2009) 149(Suppl 1): 73-6
Proteome analysis of apical and basal regions of poplar stems under gravitropic stimulation
Azri W, Chambon C, Herbette S, Brunel N, Coutand C, Leplé JC, Ben Rejeb I, Ammar S, Julien JL, Roeckel-Drevet P.
Physiol Plant (2009) 136(2): 193-208
Proteomics and comparative genomic investigations reveal heterogeneity in evolutionary rate of male reproductive proteins in mice (Mus domesticus)
Dean MD, Clark NL, Findlay GD, Karn RC, Yi X, Swanson WJ, Maccoss MJ, Nachman MW.
Mol Biol Evol Early Edition: published 6-May-2009
Proteomic Investigation of the Time Course Responses of RAW 264.7 Macrophages to Salmonella Infection
Shi L, Chowdhury SM, Smallwood HS, Yoon H, Mottaz-Brewer HM, Norbeck AD, McDermott JE, Clauss TR, Heffron F, Smith RD, Adkins JN.
Infect Immun (2009) 77(8): 3227-33
SLP-65 Phosphorylation Dynamics Reveals a Functional Basis for Signal Integration by Receptor-proximal Adaptor Proteins
Thomas Oellerich, Mads Gronborg, Konstantin Neumann, He-Hsuan Hsiao, Henning Urlaub, and Jurgen Wienands
Mol Cell Proteomics (2009) 8(7): 1738-1750
Proteome characterization of mouse brain mitochondria using electrospray ionization tandem mass spectrometry
Fang X, Lee CS.
Methods Enzymol (2009) 457: 49-62
Proteomic profiling of growth hormone responsive proteins in human peripheral blood leukocytes
Chung L, Nelson AE, Ho KK, Baxter RC.
J Clin Endocrinol Metab Early Edition: published 2-Jun-2009
Principal Component Analysis of Proteome Dynamics in Iron-starved Mycobacterium Tuberculosis
Rao PK, Li Q.
J Proteomics Bioinform (2009) 2(1): 19-31
Proteome Analysis of Probenazole-Effect in Rice-Bacterial Blight Interactions
Mahmood T, Kakishima M, Komatsu S.
Protein Pept Lett Early Edition: published 10-Sep-2009
A perfect genome annotation is within reach with the proteomics and genomics alliance
Armengaud J.
Curr Opin Microbiol (2009) 12(3): 292-300
Characterization and identification of proteases secreted by Aspergillus fumigatus using free flow electrophoresis and MS
Madlen Neustadt, Victor Costina, Claudio Kupfahl, Dieter Buchheidt, Christoph Eckerskorn, Michael Neumaier, Peter Findeisen
ELECTROPHORESIS (2009) 30(12): 2142-2150
Proteomic analysis of human papillomavirus-related oral squamous cell carcinoma: Identification of thioredoxin and epidermal-fatty acid binding protein as upregulated protein markers in microdissected tumor tissue
Christian Melle, Gnther Ernst, Robert Winkler, Bettina Schimmel, Jens Peter Klussmann, Claus Wittekindt, Orlando Guntinas-Lichius, Ferdinand von Eggeling
PROTEOMICS (2009) 9(8): 2193-2201
Proteomic analysis of the nucleus accumbens of rats with different vulnerability to cocaine addiction
Del Castillo C, Morales L, Alguacil LF, Salas E, Garrido E, Alonso E, Pérez-García C.
Neuropharmacology (2009) 57(1): 41-8
Analysis of salivary transcripts and antigens of the sand fly Phlebotomus arabicus
Hostomska J, Volfova V, Mu J, Garfield M, Rohousova I, Volf P, Valenzuela JG, Jochim RC.
BMC Genomics (2009) 10(1): 282
Early osteogenic differential protein profile detected by proteomic analysis in human periodontal ligament cells
Wu L, Wei X, Ling J, Liu L, Liu S, Li M, Xiao Y.
J Periodontal Res Early Edition: published 18-May-2009
Deterministic protein inference for shotgun proteomics data provides new insights into Arabidopsis pollen development and function
Grobei MA, Qeli E, Brunner E, Rehrauer H, Zhang R, Roschitzki B, Basler K, Ahrens CH, Grossniklaus U.
Genome Res Early Edition: published 22-Jun-2009
Conservation and variability of West Nile virus proteins
Koo QY, Khan AM, Jung KO, Ramdas S, Miotto O, Tan TW, Brusic V, Salmon J, August JT.
PLoS ONE (2009) 4(4): e5352
Normal protein composition of synapses in Ts65Dn mice: a mouse model of Down syndrome
Fernandez F, Trinidad JC, Blank M, Feng DD, Burlingame AL, Garner CC.
J Neurochem (2009) 110(1): 157-69
Contactin-2/TAG-1-directed autoimmunity is identified in multiple sclerosis patients and mediates gray matter pathology in animals
Derfuss T, Parikh K, Velhin S, Braun M, Mathey E, Krumbholz M, Kümpfel T, Moldenhauer A, Rader C, Sonderegger P, Pöllmann W, Tiefenthaller C, Bauer J, Lassmann H, Wekerle H, Karagogeos D, Hohlfeld R, Linington C, Meinl E.
Proc Natl Acad Sci U S A (2009) 106(20): 8302-7
Initial comparison of proteomic profiles of whole unstimulated saliva obtained from generalized aggressive periodontitis patients and healthy control subjects
Wu Y, Shu R, Luo LJ, Ge LH, Xie YF.
J Periodontal Res Early Edition: published 18-May-2009
Identification of harmless and pathogenic algae of the genus Prototheca by MALDI-MS
Martin von Bergen, Angelika Eidner, Frank Schmidt, Jayaseelan Murugaiyan, Henry Wirth, Hans Binder, Thomas Maier, Uwe Roesler
PROTEOMICS - CLINICAL APPLICATIONS (2009) 3(7): 774-784
Could proteomic research deliver the next generation of treatments for pneumococcal meningitis?
Goonetilleke UR, Ward SA, Gordon SB.
Interdiscip Perspect Infect Dis (2009) 2009: 214216
Proteomic analysis of lung tissue of rats exposed to cigarette smoke and radon
Xu NY, Zhang SP, Dong L, Nie JH, Tong J.
J Toxicol Environ Health A (2009) 72(11): 752-8
Multiplexed Cell Signaling Analysis of Metastatic and Nonmetastatic Colorectal Cancer Reveals COX2-EGFR Signaling Activation as a Potential Prognostic Pathway Biomarker
Pierobon M, Calvert V, Belluco C, Garaci E, Deng J, Lise M, Nitti D, Mammano E, Marchi FD, Liotta L, Petricoin E.
Clin Colorectal Cancer (2009) 8(2): 110-7
Milk Fat Globule Protein Epidermal Growth Factor-8. A Pivotal Relay Element Within the Angiotensin II and Monocyte Chemoattractant Protein-1 Signaling Cascade Mediating Vascular Smooth Muscle Cells Invasion
Fu Z, Wang M, Gucek M, Zhang J, Wu J, Jiang L, Monticone RE, Khazan B, Telljohann R, Mattison J, Sheng S, Cole RN, Spinetti G, Pintus G, Liu L, Kolodgie FD, Virmani R, Spurgeon H, Ingram DK, Everett AD, Lakatta EG, Van Eyk JE.
Circ Res (2009) 104(12): 1337-46
Deep depletion of abundant serum proteins reveals low-abundant proteins as potential biomarkers for human ovarian cancer
Biaoyang Lin, James T. White, Jian Wu, Shashikant Lele, Lloyd J. Old, Leroy Hood, Kunle Odunsi
PROTEOMICS - CLINICAL APPLICATIONS (2009) 3(7): 853-861
Upregulation of glycolytic enzymes in proteins secreted from human colon cancer cells with 5-fluorouracil resistance
Young-Kyoung Shin, Byong Chul Yoo, Yong Sang Hong, Hee Jin Chang, Kyung Hae Jung, Seung-Yong Jeong, Jae-Gahb Park
ELECTROPHORESIS (2009) 30(12): 2182-2192
Proteomic profiling of heat shock proteins: An emerging molecular approach with direct pathophysiological and clinical implications
Patrizia Bottoni, Bruno Giardina, Roberto Scatena
PROTEOMICS - CLINICAL APPLICATIONS (2009) 3(6): 636-653
Cytokeratin 8/18 overexpression and complex formation as an indicator of GST-P positive foci transformation into hepatocellular carcinomas
Kakehashi A, Inoue M, Wei M, Fukushima S, Wanibuchi H.
Toxicol Appl Pharmacol (2009) 238(1): 71-9
Proteomic characterization of lipid raft proteins in amyotrophic lateral sclerosis mouse spinal cord
Zhai J, Ström AL, Kilty R, Venkatakrishnan P, White J, Everson WV, Smart EJ, Zhu H.
FEBS J (2009) 276(12): 3308-23
Analyses of the spleen proteome of chickens infected with Marek's disease virus
Thanthrige-Don N, Abdul-Careem MF, Shack LA, Burgess SC, Sharif S.
Virology (2009) 390(2): 356-67
Comparative proteomics analysis on differentiation of human promyelocytic leukemia HL-60 cells into granulocyte and monocyte lineages
Wang WJ, Tang W, Qiu ZY.
Chin J Cancer (2009) 28(2): 117-21
Serum proteome alteration of severe sepsis in the treatment of continuous renal replacement therapy
Gong Y, Chen N, Wang FQ, Wang ZH, Xu HX.
Nephrol Dial Transplant Early Edition: published 21-May-2009
Detection of autoantibodies against cyclophilin A and triosephosphate isomerase in sera from breast cancer patients by proteomic analysis
Michiko Sato Tamesa, Yasuhiro Kuramitsu, Masanori Fujimoto, Noriko Maeda, Yukiko Nagashima, Toshiyuki Tanaka, Shigeru Yamamoto, Masaaki Oka, Kazuyuki Nakamura
ELECTROPHORESIS (2009) 30(12): 2168-2181
Identification of novel candidate protein biomarkers for the post-polio syndrome - Implications for diagnosis, neurodegeneration and neuroinflammation
Henrik Gonzalez, Jan Ottervald, Kerstin C. Nilsson, Niclas Sjögren,Tasso Miliotis, Helena Von Bahr, Mohsen Khademi, Bodil Eriksson, Sven Kjellström, Akos Vegvari, Robert Harris, György Marko-Varga, KristiaBorg, Johan Nilsson, Thomas Laurell, Tomas Olsson, Bo Franzén
Journal of Proteomics (2009) 71(6): 670-681
Identification of the major allergen of Malassezia globosa relevant for atopic dermatitis
Ishibashi Y, Kato H, Asahi Y, Sugita T, Nishikawa A.
J Dermatol Sci (2009) 55(3): 185-92
Surface-enhanced laser desorption/ionization time-of-flight mass spectrometry: serum protein profiling in seminoma patients
Strenziok R, Hinz S, Wolf C, Conrad T, Krause H, Miller K, Schrader M.
World J Urol Early Edition: published 16-Jun-2009
Pharmacoproteomics in cardiac hypertrophy and atherosclerosis
Lazaro A, Alvarez-Llamas G, Gallego-Delgado J, de la Cuesta F, Osende J, Eugenia M, Barderas G, Vivanco F.
Cardiovasc Hematol Disord Drug Targets (2009) 9(2): 141-8
Application of Label-free Quantitative Peptidomics for the Identification of Urinary Biomarkers of Kidney Chronic Allograft Dysfunction
Luis F. Quintana, Josep M. Campistol, Maria P. Alcolea, Elisenda Banon-Maneus, Amandae Sol-Gonzalez, and Pedro R. Cutillas
Mol Cell Proteomics (2009) 8(7): 1658-1673
Pancreatic cancer biomarkers discovery by surface-enhanced laser desorption and ionization time-of-flight mass spectrometry
Navaglia F, Fogar P, Basso D, Greco E, Padoan A, Tonidandel L, Fadi E, Zambon CF, Bozzato D, Moz S, Seraglia R, Pedrazzoli S, Plebani M.
Clin Chem Lab Med (2009) 47(6): 713-23
Ubiquitination and cysteine nitrosylation during aging and Alzheimer's disease
Riederer IM, Schiffrin M, Kövari E, Bouras C, Riederer BM.
Brain Res Bull Early Edition: published 6-May-2009
SELDI-TOF-MS-based Serum Proteomic Screening in Combination with CT Scan Distinguishes Renal Cell Carcinoma from Benign Renal Tumors and Healthy Persons
Xu G, Xiang CQ, Lu Y, Wang WJ, Kang XN, Liao P, Ding Q, Zhang YF.
Technol Cancer Res Treat (2009) 8(3): 225-30
Mass Spectrometry-based Protein Profiling to Determine the Cause of Lysosomal Storage Diseases of Unknown Etiology
David E. Sleat, Lin Ding, Shudan Wang, Caifeng Zhao, Yanhong Wang, Winnie Xin, Haiyan Zheng, Dirk F. Moore, Katherine B. Sims, and Katherine B. Sims
Mol Cell Proteomics (2009) 8(7): 1708-1718
The Role of Proteomics in Osteoarthritis Pathogenesis Research
Ruiz-Romero C, Blanco FJ.
Curr Drug Targets (2009) 10(6): 543-556
Alterations in the human lung proteome with lipopolysaccharide and activated protein C
Bowler RP, Reisdorph NA, Reisdorph R, Abraham E.
BMC Pulm Med (2009) 9(1): 20
Identification of urine PLK2 as a marker of bladder tumors by proteomic analysis
Tan LB, Chen KT, Yuan YC, Liao PC, Guo HR.
World J Urol Early Edition: published 9-Jun-2009
The evolving role of mass spectrometry in cancer biomarker discovery
Wang P, Whiteaker JR, Paulovich AG.
Cancer Biol Ther Early Edition: published 6-Jun-2009
Autoantibody to Tumor Antigen, Alpha 2-HS Glycoprotein: A Novel Biomarker of Breast Cancer Screening and Diagnosis
Yi JK, Chang JW, Han W, Lee JW, Ko E, Kim DH, Bae JY, Yu J, Lee C, Yu MH, Noh DY.
Cancer Epidemiol Biomarkers Prev (2009) 18(5): 1357-64
Proteomic profiling of growth hormone responsive proteins in human peripheral blood leukocytes
Chung L, Nelson AE, Ho KK, Baxter RC.
J Clin Endocrinol Metab Early Edition: published 2-Jun-2009
Comparative proteomic analysis of antibiotic-sensitive and insensitive isolates of Orientia tsutsugamushi
Chao CC, Garland DL, Dasch GA, Ching WM.
Ann N Y Acad Sci (2009) 1166: 27-37.
Identification of regulatory Hck and PAI-2 proteins in the monocyte response to PEG-containing matrices
Zuckerman ST, Brown JF, Kao WJ.
Biomaterials (2009) 30(23-24): 3825-33
Exploring the priming mechanism of liver regeneration: proteins and protein complexes
Xinyu Deng, Wenrui Li, Ning Chen, Yanwei Sun, Handong Wei, Ying Jiang, Fuchu He
PROTEOMICS (2009) 9(8): 2202-2216
GnRH analogue remarkably down-regulates inflammatory proteins in peritoneal fluid proteome of women with endometriosis
Ferrero S, Gillott DJ, Remorgida V, Anserini P, Ragni N, Grudzinskas JG.
J Reprod Med (2009) 54(4): 223-31
Proteomic and functional characterization of the outer membrane vesicles from the gastric pathogen Helicobacter pylori
Erica Mullaney, Paul A. Brown, Sinead M. Smith, Catherine H. Botting, Yoshio Y. Yamaoka, Ana M. Terres, Dermot P. Kelleher, Henry J. Windle
PROTEOMICS - CLINICAL APPLICATIONS (2009) 3(7): 785-796
Differentially displayed proteins as a tool for the development of type 2 diabetes
Dincer A, Onal S, Timur S, Zeytunluoglu A, Duman E, Zihnioglu F.
Ann Clin Biochem Early Edition: published 19-May-2009
Comparative proteomic studies of plasma from children with pneumococcal pneumonia
Tsai MH, Lin TY, Hsieh SY, Chiu CY, Chiu CH, Huang YC.
Scand J Infect Dis Early Edition: published 26-Apr-2009
Proteomic and Tissue Array Profiling Identifies Elevated Hypoxia-Regulated Proteins in Pancreatic Ductal Adenocarcinoma
Cui Y, Zhang D, Jia Q, Li T, Zhang W, Han J.
Cancer Invest (2009) 27(7): 747-55
A Proteomics Analysis of the Effects of Chronic Hemiparetic Stroke on Troponin T Expression in Human Vastus Lateralis
Rabek JP, Hafer-Macko CE, Amaning JK, Deford JH, Dimayuga VL, Madsen MA, Macko RF, Papaconstantinou J.
J Gerontol A Biol Sci Med Sci (2009) 64(8): 839-49
Proteomic identification of a monoclonal antibody recognizing caveolin-1 in hepatocellular carcinoma with metastatic potential
Hu MY, Lam CT, Liu KD, Xu Z, Fatima S, Su YC, Tsang F, Chen J, Pang JZ, Qin LX, Luk JM.
Protein Pept Lett (2009) 16(5): 479-85
Identification of macrophage migration inhibitory factor and human neutrophil peptides 1-3 as potential biomarkers for gastric cancer
Mohri Y, Mohri T, Wei W, Qi YJ, Martin A, Miki C, Kusunoki M, Ward DG, Johnson PJ.
Br J Cancer (2009) 101(2): 295-302