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SPS' DigestIssue 63, 28-Sep-2009 |
BiomarkerDigger: A versatile disease proteome database and analysis platform for the identification of plasma cancer biomarkers
Seul-Ki Jeong, Min-Seok Kwon, Eun-Young Lee, Hyoung-Joo Lee, Sang Yun Cho, Hoguen Kim, Jong Shin Yoo, Gilbert S. Omenn, Ruedi Aebersold, Sam Hanash, Young-Ki Paik
PROTEOMICS (2009) 9(14): 3729-3740
Feature extraction and dimensionality reduction for mass spectrometry data
Liu Y.
Comput Biol Med (2009) 39(9): 818-23
A guide to the Proteomics Identifications Database proteomics data repository
Juan Antonio Vizcaíno, Richard Côté, Florian Reisinger, Joseph M. Foster, Michael Mueller, Jonathan Rameseder, Henning Hermjakob, Lennart Martens
PROTEOMICS (2009) 9(18): 4276-4283
Pathway analysis for intracellular Porphyromonas gingivalis using a strain ATCC 33277 specific database
Hendrickson EL, Xia Q, Wang T, Lamont RJ, Hackett M.
BMC Microbiol (2009) 9(1): 185
Improving 2-DE gel image denoising using contourlets
Panagiotis Tsakanikas, Elias S. Manolakos
PROTEOMICS (2009) 9(15): 3877-3888
The UniProtKB/Swiss-Prot knowledgebase and its Plant Proteome Annotation Program
Michel Schneider, Lydie Lane, Emmanuel Boutet, Damien Lieberherr, Michael Tognolli, Lydie Bougueleret, Amos Bairoch
Journal of Proteomics (2009) 72(3): 567-573
Optimal analysis of complex protein mass spectra
Martijn Dijkstra, Ritsert C. Jansen
PROTEOMICS (2009) 9(15): 3869-3876
A Bayesian Approach to Protein Inference Problem in Shotgun Proteomics
Li YF, Arnold RJ, Li Y, Radivojac P, Sheng Q, Tang H.
J Comput Biol Early Edition: published 1-Aug-2009
Automated protein (re)sequencing with MS/MS and a homologous database yields almost full coverage and accuracy
Xiaowen Liu, Yonghua Han, Denis Yuen, and Bin Ma
Bioinformatics (2009) 25(17): 2174-2180
Unique Ion Signature Mass Spectrometry, a Deterministic Method to Assign
Peptide Identity
Mol Cell Proteomics (2009) 8(9): 2051-2062
Protein quantification across hundreds of experimental conditions
Khan Z, Bloom JS, Garcia BA, Singh M, Kruglyak L.
Proc Natl Acad Sci U S A Early Edition: published 26-Aug-2009
Multiple information-based spot matching method for 2-DE images
Hua-Mei Xin, Yuemin Zhu
ELECTROPHORESIS (2009) 30(14): 2477-2480
OMSSA Parser: An open-source library to parse and extract data from OMSSA MS/MS search results
Harald Barsnes, Steffen Huber, Albert Sickmann, Ingvar Eidhammer, Lennart Martens
PROTEOMICS (2009) 9(14): 3772-3774
Supervised prediction of drug-target interactions using bipartite local models
Kevin Bleakley and Yoshihiro Yamanishi
Bioinformatics (2009) 25(18): 2397-2403
Profiling MS proteomics data using smoothed non-linear energy operator and Bayesian additive regression trees
Shan He, Xiaoli Li, Mark R. Viant, Xin Yao
PROTEOMICS (2009) 9(17): 4176-4191
Proteome-wide Prediction of Signal Flow Direction in Protein Interaction
Networks Based on Interacting Domains
Mol Cell Proteomics (2009) 8(9): 2063-2070
UFO: a web server for ultra-fast functional profiling of whole genome protein sequences
Meinicke P.
BMC Genomics (2009) 10(1): 409
Getting a grip on proteomics data - Proteomics Data Collection (ProDaC)
Martin Eisenacher, Lennart Martens, Tanja Hardt, Michael Kohl, Harald Barsnes, Kenny Helsens, Jari Häkkinen, Fredrik Levander, Ruedi Aebersold, Joël Vandekerckhove, Michael J. Dunn, Frederique Lisacek, Jennifer A. Siepen, Simon J. Hubbard, Pierre-Alain Binz, Martin Blüggel, Herbert Thiele, John Cottrell, Helmut E. Meyer, Rolf Apweiler, Christian Stephan
PROTEOMICS (2009) 9(15): 3928-3933
Comparison of structure-based and threading-based approaches to protein functional annotation
Brylinski M, Skolnick J.
Proteins Early Edition: published 5-Aug-2009
High-throughput minor histocompatibility antigen prediction
David S. DeLuca, Britta Eiz-Vesper, Nektarios Ladas, Barbara Anna-Maria Khattab, and Rainer Blasczyk
Bioinformatics (2009) 25(18): 2411-2417
ITM Probe: analyzing information flow in protein networks
Aleksandar Stojmirovic and Yi-Kuo Yu
Bioinformatics (2009) 25(18): 2447-2449
LymPHOS: Design of a phosphosite database of primary human T cells
David Ovelleiro, Montserrat Carrascal, Vanessa Casas, Joaquin Abian
PROTEOMICS (2009) 9(14): 3741-3751
Database on Demand - An online tool for the custom generation of FASTA-formatted sequence databases
Florian Reisinger, Lennart Martens
PROTEOMICS (2009) 9(18): 4421-4424
Snake venomics and antivenomics of Bothrops colombiensis, a medically important pitviper of the Bothrops atrox-asper complex endemic to Venezuela: Contributing to its taxonomy and snakebite management
Juan J. Calvete, Adolfo Borges, Ãlvaro Segura, Marietta Flores-DÃazAlberto Alape-Girón, José MarÃa Gutiérrez, Nardy Diez, Leonardo De Sousa, Demetrio Kiriakos, Eladio Sánchez, José G. Faks, José EscolanLibia Sanz
Journal of Proteomics (2009) 72(2): 227-240
Application of iTRAQ to catalogue the skeletal muscle proteome in pigs and assessment of effects of gender and diet dephytinization
Hatam A. Hakimov, Sandra Walters, Tom C. Wright, Roy G. Meidinger, Chris P. Verschoor, Moshe Gadish, David K. Y. Chiu, Martina V. Strömvik, Cecil W. Forsberg, Serguei P. Golovan
PROTEOMICS (2009) 9(16): 4000-4016
Proteomics analysis of immuno-precipitated synaptic protein complexes
P. Klemmer, A.B. Smit, K.W. Li
Journal of Proteomics (2009) 72(1): 82-90
A label free quantitative proteomic analysis of the Saccharomyces cerevisiae nucleus
Amber L. Mosley, Laurence Florens, Zhihui Wen, Michael P. Washburn
Journal of Proteomics (2009) 72(1): 110-120
p35 interacts with ?-tubulin and organelle proteins: Nuclear translocation of p35 in dying cells
Yonghae Son, Sunmi Kim, Kyungha Choi, Youngchul Park, Seongkug Eo, Youngkook Kim, Byungyong Rhim, Koanhoi Kim
PROTEOMICS (2009) 9(16): 4036-4047
Protein expression profiles in osteoblasts in response to differentially shaped hydroxyapatite nanoparticles
Xu JL, Khor KA, Sui JJ, Zhang JH, Chen WN.
Biomaterials Early Edition: published 22-Jul-2009
Proteomic evaluation of wound-healing processes in potato (Solanum tuberosum L.) tuber tissue
Inês Chaves, Carla Pinheiro, Jorge A. P. Paiva, Sébastien Planchon, Kjell Sergeant, Jenny Renaut, José A. Graça, Gonçalo Costa, Ana V. Coelho, Cândido P. Pinto Ricardo
PROTEOMICS (2009) 9(17): 4154-4175
Proteome analysis of chloroplast proteins in stage albinism line of winter wheat (triticum aestivum) FA85
Hou DY, Xu H, Du GY, Lin JT, Duan M, Guo AG.
BMB Rep (2009) 42(7): 450-5
Identification of a novel HTRA1-susceptible cleavage site in human aggrecan: Evidence for the involvement of htra1 in aggrecan proteolysis in vivo
Chamberland A, Wang E, Jones AR, Collins-Racie LA, Lavallie ER, Huang Y, Liu L, Morris EA, Flannery CR, Yang Z.
J Biol Chem Early Edition: published 5-Aug-2009
Snake venomics of the Siamese Russell's viper (Daboia russelli siamensis) - Relation to pharmacological activities
Michaela Risch, Dessislava Georgieva, Martin von Bergen, Nico Jehmlich, Nicolay Genov, Raghuvir K. Arni, Christian Betzel
Journal of Proteomics (2009) 72(2): 256-269
Hunting for low abundant redox proteins in plant plasma membranes
Sabine Lüthje, David Hopff, Anna Schmitt, Claudia-Nicole Meisrimler,Ljiljana Menckhoff
Journal of Proteomics (2009) 72(3): 475-483
Identification of novel Mycobacterium bovis antigens by dissection of crude protein fractions
Meikle V, Alito A, Llera AS, Gioffré A, Peralta A, Buddle BM, Cataldi A.
Clin Vaccine Immunol Early Edition: published 29-Jul-2009
Establishment of differential expression profiles from invasive and non-invasive pituitary adenomas
Liu Z, Liu Y, Fang W, Chen W, Li C, Xiao Z.
Zhong Nan Da Xue Xue Bao Yi Xue Ban (2009) 34(7): 569-75
Proteomic profiling of the prechylomicron transport vesicle involved in the assembly and secretion of apoB-48-containing chylomicrons in the intestinal enterocytes
Diana M. Wong, Jennifer P. Webb, Paul M. Malinowski, Joseph Macri, Khosrow Adeli
PROTEOMICS (2009) 9(14): 3698-3711
Unintended changes in protein expression revealed by proteomic analysis of seeds from transgenic pea expressing a bean ?-amylase inhibitor gene
Hancai Chen, Greg Bodulovic, Prudence J. Hall, Andy Moore, Thomas J. V. Higgins, Michael A. Djordjevic, Barry G. Rolfe
PROTEOMICS (2009) 9(18): 4406-4415
Life-style changes of a halophilic archaeon analyzed by quantitative proteomics
Andreas Tebbe, Alexander Schmidt, Kosta Konstantinidis, Michaela Falb, Birgit Bisle, Christian Klein, Michalis Aivaliotis, Josef Kellermann, Frank Siedler, Friedhelm Pfeiffer, Friedrich Lottspeich, Dieter Oesterhelt
PROTEOMICS (2009) 9(15): 3843-3855
Analysis of the membrane proteome of canine pancreatic rough microsomes identifies a novel Hsp40, termed ERj7
René P. Zahedi, Christian Völzing, Andreas Schmitt, Michael Frien, Martin Jung, Johanna Dudek, Stefanie Wortelkamp, Albert Sickmann, Richard Zimmermann
PROTEOMICS (2009) 9(13): 3463-3473
Biochemical and proteomic approaches for the study of membrane microdomains
Yu Zi Zheng, Leonard J. Foster
Journal of Proteomics (2009) 72(1): 12-22
Epidermal Growth Factor Receptor Phosphorylation Sites Ser991 and Tyr998
Are Implicated in the Regulation of Receptor Endocytosis and
Mol Cell Proteomics (2009) 8(9): 2131-2144
Mapping Protein Abundance Patterns in the Brain Using Voxelation Combined with Liquid Chromatography and Mass Spectrometry
Petyuk VA, Qian WJ, Smith RD, Smith DJ.
Methods Early Edition: published 1-Aug-2009
Radiolabelled proteomics to determine differential functioning of Accumulibacter during the anaerobic and aerobic phases of a bioreactor operating for enhanced biological phosphorus removal
Wexler M, Richardson DJ, Bond PL.
Environ Microbiol Early Edition: published 24-Jul-2009
A relatively simple and economical protocol for proteomic analyses of human 20S proteasome: Compatible with both scaled-up and scaled-down purifications
Guoqiang Chen, Yuanming Luo, Xinli Wang, Zhiyun Zhao, Hui Liu, Haijing Zhang, Zhili Li
ELECTROPHORESIS (2009) 30(14): 2422-2430
Comparative proteomic studies of root-microbe interactions
Ulrike Mathesius
Journal of Proteomics (2009) 72(3): 353-366
Proteome analysis of a single zebrafish embryo using three different digestion strategies coupled with LC-MS/MS
Lin Y, Chen Y, Yang X, Xu D, Liang S.
Anal Biochem Early Edition: published 27-Jul-2009
Proteomic identification of proteins translocated to membrane microdomains upon treatment of fibroblasts with the glycosphingolipid, C8-?-D-lactosylceramide
Seong-youl Kim, Teng-ke Wang, Raman Deep Singh, Christine L. Wheatley, David L. Marks, Richard E. Pagano
PROTEOMICS (2009) 9(18): 4321-4328
Proteomic analysis from haploid and diploid embryos of Quercus suber L. identifies qualitative and quantitative differential expression patterns
Aranzazu Gómez, Juan Antonio López, Beatriz Pintos, Emilio Camafeita, Ma Ángeles Bueno
PROTEOMICS (2009) 9(18): 4355-4367
Proteomic identification of pleckstrin-associated proteins in platelets: Possible interactions with actin
Akeel Baig, Xiankun Bao, Richard J. Haslam
PROTEOMICS (2009) 9(17): 4254-4258
A comparative proteomic analysis of rice seedlings under various high-temperature stresses
Han F, Chen H, Li XJ, Yang MF, Liu GS, Shen SH.
Biochim Biophys Acta Early Edition: published 24-Jul-2009
Deciphering proteomic signatures of early diapause in Nasonia
Wolschin F, Gadau J.
PLoS One (2009) 4(7): e6394
Changes in the 2-DE protein profile during zygotic embryogenesis in the Brazilian Pine (Araucaria angustifolia)
Tiago S. Balbuena, Vanildo Silveira, Magno Junqueira, Leonardo L.C. Dias, Claudete Santa-Catarina, Andrej Shevchenko, Eny I.S. Floh
Journal of Proteomics (2009) 72(3): 337-352
The coming of age of axonal neurotrophin signaling endosomes
Chengbiao Wu, Bianxiao Cui, Lingmin He, Liang Chen, William C. Mobley
Journal of Proteomics (2009) 72(1): 46-55
Proteomic analysis of changes in mitochondrial protein expression during fruit senescence
Guozheng Qin, Qing Wang, Jia Liu, Boqiang Li, Shiping Tian
PROTEOMICS (2009) 9(17): 4241-4253
Analysis of novel over- and under-sulfated glycosaminoglycan sequences by enzyme cleavage and multiple stage MS
Alina D. Zamfir, Corina Flangea, Eugen Sisu, Alina F. Serb, Nicolae Dinca, Peter Bruckner, Daniela G. Seidler
PROTEOMICS (2009) 9(13): 3435-3444
Proteome analysis of the m. longissimus dorsi between fattening stages in Hanwoo steer
Kim NK, Lee SH, Cho YM, Son ES, Kim KY, Lee CS, Yoon D, Im SK, Oh SJ, Park EW.
BMB Rep (2009) 42(7): 433-8
Hydroponics on a chip: Analysis of the Fe deficient Arabidopsis thylakoid membrane proteome
Arthur Laganowsky, Stephen M. Gómez, Julian P. Whitelegge, John N. Nishio
Journal of Proteomics (2009) 72(3): 397-415
Analysis of Protein Expression Profile in the Cerebellum of Cerebral Infarction Rats After Treadmill Training
Mizutani K, Sonoda S, Hayashi N, Takasaki A, Beppu H, Saitoh E, Shimpo K.
Am J Phys Med Rehabil Early Edition: published 5-Aug-2009
Differential Expression of Sarcoplasmic and Myofibrillar Proteins of Rat Soleus Muscle during Denervation Atrophy
Sato Y, Shimizu M, Mizunoya W, Wariishi H, Tatsumi R, Buchman VL, Ikeuchi Y.
Biosci Biotechnol Biochem Early Edition: published 7-Aug-2009
Complementary Quantitative Proteomics Reveals that Transcription Factor
AP-4 Mediates E-box-dependent Complex Formation for Transcriptional
Mol Cell Proteomics (2009) 8(9): 2034-2050
Phosphorylation of the SSBP2 and ABL proteins by the ZNF198-FGFR1 fusion kinase seen in atypical myeloproliferative disorders as revealed by phosphopeptide-specific MS
Chitta Kasyapa, Ting-Lei Gu, Lalitha Natarajan, Roberto Polakiewicz, John K. Cowell
PROTEOMICS (2009) 9(16): 3979-3988
Proteomic profiling of PrP27-30-enriched preparations extracted from the brain of hamsters with experimental scrapie
Alessandra Giorgi, Laura Di Francesco, Serena Principe, Giuseppina Mignogna, Lau Sennels, Carmine Mancone, Tonino Alonzi, Marco Sbriccoli, Angela De Pascalis, Juri Rappsilber, Franco Cardone, Maurizio Pocchiari, Bruno Maras, M. Eugenia Schininà
PROTEOMICS (2009) 9(15): 3802-3814
Proteomic analysis of extracellular matrix and vesicles
Zhen Xiao, Josip Blonder, Ming Zhou, Timothy D. Veenstra
Journal of Proteomics (2009) 72(1): 34-45
Calpain-truncated CRMP-3 and -4 contribute to potassium deprivation-induced apoptosis of cerebellar granule neurons
Wei Liu, Xing-wang Zhou, Shaojun Liu, Kunhua Hu, Chong Wang, Qingyu He, Mingtao Li
PROTEOMICS (2009) 9(14): 3712-3728
Size distribution of native cytosolic proteins of Thermoplasma acidophilum
Na Sun, Noriko Tamura, Tomohiro Tamura, Roland Wilhelm Knispel, Thomas Hrabe, Christine Kofler, Stephan Nickell, István Nagy
PROTEOMICS (2009) 9(14): 3783-3786
Comparison of cytokine expression in mesenchymal stem cells from human placenta, cord blood, and bone marrow
Hwang JH, Shim SS, Seok OS, Lee HY, Woo SK, Kim BH, Song HR, Lee JK, Park YK.
J Korean Med Sci (2009) 24(4): 547-54
The distribution of CTL epitopes in HIV-1 appears to be random, and similar to that of other proteomes
Schmid BV, Kesmir C, de Boer RJ.
BMC Evol Biol (2009) 9(1): 184
Differential Membrane Proteome Analysis Reveals Novel Proteins Involved in
the Degradation of Aromatic Compounds in Geobacter metallireducens
Mol Cell Proteomics (2009) 8(9): 2159-2169
Proteomic analysis of increased Parkin expression and its interactants provides evidence for a role in modulation of mitochondrial function
Eleanor J. Davison, Kyla Pennington, Chao-Chun Hung, Jianhe Peng, Rumana Rafiq, Antje Ostareck-Lederer, Dirk H. Ostareck, Helen C. Ardley, Rosamonde E. Banks, Philip A. Robinson
PROTEOMICS (2009) 9(18): 4284-4297
Low concentration of anti-7,8-dihydroxy-9,10-epoxy-7,8,9,10-tetrahydrobenzo[a]pyrene induces alterations of extracellular protein profile of exposed epithelial cells
Hui Liu, Jing Shen, Lei Feng, Yingnian Yu
PROTEOMICS (2009) 9(17): 4259-4264
Chronic ethanol feeding affects proteasome-interacting proteins
Marie-Pierre Bousquet-Dubouch, Sheila Nguen, David Bouyssié, Odile Burlet-Schiltz, Samuel W. French, Bernard Monsarrat, Fawzia Bardag-Gorce
PROTEOMICS (2009) 9(13): 3609-3622
Large-scale proteomic analysis of tyrosine-phosphorylation induced by T-cell receptor or B-cell receptor activation reveals new signaling pathways
Masaki Matsumoto, Koji Oyamada, Hidehisa Takahashi, Takamichi Sato, Shigetsugu Hatakeyama, Keiichi I. Nakayama
PROTEOMICS (2009) 9(13): 3549-3563
Disulfides as redox switches: from molecular mechanisms to functional significances
Wouters MA, Fan SW, Haworth NL.
Antioxid Redox Signal Early Edition: published 27-Jul-2009
Proteomic characterization of Phragmites communis in ecotypes of swamp and desert dune
Suxia Cui, Jia Hu, Bin Yang, Lu Shi, Fang Huang, Sau-Na Tsai, Sai-Ming Ngai, Yikun He, Jianhua Zhang
PROTEOMICS (2009) 9(16): 3950-3967
Differential modulation of S-nitrosoproteome of Brassica juncea by low temperature: Change in S-nitrosylation of Rubisco is responsible for the inactivation of its carboxylase activity
Jasmeet Kaur Abat, Renu Deswal
PROTEOMICS (2009) 9(18): 4368-4380
Protein chip analysis of pluripotency-associated proteins in NIH3T3 fibroblast
Brijesh S. Ajjappala, Myung-Sun Kim, Eung-Yoon Kim, Jae-Hwan Kim, In-Cheol Kang, Kwang-Hyun Baek
PROTEOMICS (2009) 9(16): 3968-3978
14-3-3 proteins: insights from genome-wide studies in yeast
van Heusden GP.
Genomics Early Edition: published 22-Jul-2009
Proteomics-based identification of two novel direct targets of hypoxia-inducible factor-1 and their potential roles in migration/invasion of cancer cells
Shi-Hua Liao, Xu-Yun Zhao, Yu-Hui Han, Jing Zhang, Li-Shun Wang, Li Xia, Ke-Wen Zhao, Ying Zheng, Meng Guo, Guo-Qiang Chen
PROTEOMICS (2009) 9(15): 3901-3912
Analysis of differential proteomes in pathogenic and non-pathogenic Leptospira: Potential pathogenic and virulence factors
Visith Thongboonkerd, Wararat Chiangjong, Putita Saetun, Supachok Sinchaikul, Shui-Tein Chen, Uraiwan Kositanont
PROTEOMICS (2009) 9(13): 3522-3534
Proteomic profiling of glucocorticoid-exposed myogenic cells: time series assessment of protein translocation and transcription of inactive mRNAs
Reeves EK, Gordish-Dressman H, Hoffman EP, Hathout Y.
Proteome Science (2009) 7(1): 26
A survey of the Arabidopsis thaliana mitochondrial phosphoproteome
Jun Ito, Nicolas L. Taylor, Ian Castleden, Wolfram Weckwerth, A. Harvey Millar, Joshua L. Heazlewood
PROTEOMICS (2009) 9(17): 4229-4240
Comparative proteomic study of the venom of the piscivorous cone snail Conus consors
Daniel Biass, Sébastien Dutertre, Alain Gerbault, Jean-Louis Menou,Robin Offord, Philippe Favreau, Reto Stöckli
Journal of Proteomics (2009) 72(2): 210-218
Fibroblast growth factor 2-induced cytoplasmic asparaginyl-tRNA synthetase promotes survival of osteoblasts by regulating anti-apoptotic PI3K/AKT signaling
Park SJ, Kim SH, Choi HS, Rhee Y, Lim SK.
Bone Early Edition: published 22-Jul-2009
The plasma membrane proteome of germinating barley embryos
Radovan Hynek, Birte Svensson, Ole Nørregaard Jensen, Vibeke Barkholt, Christine Finnie
PROTEOMICS (2009) 9(14): 3787-3794
The Hsp70 homolog Ssb is essential for glucose sensing via the SNF1 kinase network
von Plehwe U, Berndt U, Conz C, Chiabudini M, Fitzke E, Sickmann A, Petersen A, Pfeifer D, Rospert S.
Genes Dev (2009) 23(17): 2102-15
The fate of GPI-less procyclin and characterisation of sialylated non-GPI anchored surface coat molecules of procyclic form Trypanosoma brucei
Güther ML, Beattie K, Lamont DJ, James J, Prescott AR, Ferguson MA.
Eukaryot Cell Early Edition: published 24-Jul-2009
Quantitative Proteomics Reveals a Dynamic Association of Proteins to
Detergent-resistant Membranes upon Elicitor Signaling in Tobacco
Mol Cell Proteomics (2009) 8(9): 2186-2198
Cliques in mitotic spindle network bring kinetochore-associated complexes to form dependence pathway
Tzu-Chi Chen, Sheng-An Lee, Chen-Hsiung Chan, Yue-Li Juang, Yi-Ren Hong, Yei-Hsuan Huang, Jin-Mei Lai, Cheng-Yan Kao, Chi-Ying F. Huang
PROTEOMICS (2009) 9(16): 4048-4062
Proteome analysis demonstrates profound alterations in human dendritic cell nature by TX527, an analogue of vitamin D
Gabriela Bomfim Ferreira, Evelyne van Etten, Kasper Lage, Daniel Aaen Hansen, Yves Moreau, Christopher T. Workman, Mark Waer, Annemieke Verstuyf, Etienne Waelkens, Lut Overbergh, Chantal Mathieu
PROTEOMICS (2009) 9(14): 3752-3764
Proteomic identification of cytosolic proteins that undergo arginine methylation during rat liver regeneration
Sinae An, Miyong Yun, Yun Gyu Park, Gil Hong Park
ELECTROPHORESIS (2009) 30(14): 2412-2421
Short-term effects of salt exposure on the maize chloroplast protein pattern
Christian Zörb, Ramona Herbst, Christoph Forreiter, Sven Schubert
PROTEOMICS (2009) 9(17): 4209-4220
Proteomic characterization of differentially expressed proteins associated with no stress in retinal ganglion cells
Kim JJ, Kim YH, Lee MY.
BMB Rep (2009) 42(7): 456-61
Abiotic environmental stress induced changes in the Arabidopsis thaliana chloroplast, mitochondria and peroxisome proteomes
Nicolas L. Taylor, Yew-Foon Tan, Richard P. Jacoby, A. Harvey Millar
Journal of Proteomics (2009) 72(3): 367-378
Bothrops insularis venomics: A proteomic analysis supported by transcriptomic-generated sequence data
Richard H. Valente, PatrÃcia R. Guimarães, Magno Junqueira, Ana Gise C. Neves-Ferreira, Márcia R. Soares, Alex Chapeaurouge, Monique R.O. Trugilho, Ileana R. León, Surza L.G. Rocha, Ana Lucia Oliveira-Carvalho,Luciana S. Wermelinger, Denis L.S. Dutra, Luciana I. Leão, Inácio L., Junqueira-de-Azevedo, Paulo L. Ho, Russolina B. Zingali, Jonas Perales, Gilberto B. Domont
Journal of Proteomics (2009) 72(2): 241-255
Endogenous HIV-1 Vpr-mediated apoptosis and proteome alteration of human T-cell leukemia virus-1 transformed C8166 cells
He F, Zeng Y, Wu X, Ji Y, He X, Andrus T, Zhu T, Wang T.
Apoptosis Early Edition: published 5-Aug-2009
Leaf proteome analysis of eight Populus ×euramericana genotypes: Genetic variation in drought response and in water-use efficiency involves photosynthesis-related proteins
Ludovic Bonhomme, Romain Monclus, Delphine Vincent, Sabine Carpin, Anne-Marie Lomenech, Christophe Plomion, Franck Brignolas, Domenico Morabito
PROTEOMICS (2009) 9(17): 4121-4142
Proteomic changes in the hypothalamus and retroperitoneal fat from male F344 rats subjected to repeated light-dark shifts
Archana Mishra, Chung-Hsien Cheng, Wen-Chien Lee, Ling-Ling Tsai
PROTEOMICS (2009) 9(16): 4017-4028
Growth phase-dependent global protein and metabolite profiles of Phaeobacter gallaeciensis strain DSM 17395, a member of the marine Roseobacter-clade
Hajo Zech, Sebastian Thole, Kerstin Schreiber, Daniela Kalhöfer, Sonja Voget, Thorsten Brinkhoff, Meinhard Simon, Dietmar Schomburg, Ralf Rabus
PROTEOMICS (2009) 9(14): 3677-3697
Proteomic profiling of Cronobacter turicensis 3032, a food-borne opportunistic pathogen
Paula Carranza, Isabel Hartmann, Angelika Lehner, Roger Stephan, Peter Gehrig, Jonas Grossmann, Simon Barkow-Oesterreicher, Bernd Roschitzki, Leo Eberl, Kathrin Riedel
PROTEOMICS (2009) 9(13): 3564-3579
Evidence for a Shared Nuclear Pore Complex Architecture That Is Conserved
from the Last Common Eukaryotic Ancestor
Mol Cell Proteomics (2009) 8(9): 2119-2130
The integral membrane of lysosomes: Its proteins and their roles in disease
John W. Callahan, Richard D. Bagshaw, Don J. Mahuran
Journal of Proteomics (2009) 72(1): 23-33
The interaction profile of homologous recombination repair proteins RAD51C, RAD51D and XRCC2 as determined by proteomic analysis
Changanamkandath Rajesh, Aaron M. Gruver, Venkatesha Basrur, Douglas L. Pittman
PROTEOMICS (2009) 9(16): 4071-4086
Proteomics of the TRAP-induced platelet releasate
Sander R. Piersma, Henk J. Broxterman, Muhammed Kapci, Richard R. de Haas, Klaas Hoekman, Henk M.W. Verheul, Connie R. Jiménez
Journal of Proteomics (2009) 72(1): 91-109
Unravelling the nuclear matrix proteome
Jakob Albrethsen, Jaco C. Knol, Connie R. Jimenez
Journal of Proteomics (2009) 72(1): 71-81
TxXIIIA, an atypical homodimeric conotoxin found in the Conus textile venom
Loïc Quinton, Nicolas Gilles, Edwin De Pauw
Journal of Proteomics (2009) 72(2): 219-226
Quantitative proteomic analysis of lentiviral vectors using 2-DE
Jérôme Denard, Stéphanie Rundwasser, Nicolas Laroudie, Florence Gonnet, Luigi Naldini, Marina Radrizzani, Anne Galy, Otto-Wilhelm Merten, Olivier Danos, Fedor Svinartchouk
PROTEOMICS (2009) 9(14): 3666-3676
Gel-based proteomics approach to the study of metabolic changes in pear tissue during storage
Pedreschi R, Hertog M, Robben J, Lilley KS, Karp NA, Baggerman G, Vanderleyden J, Nicolaï B.
J Agric Food Chem (2009) 57(15): 6997-7004
A combined 15N tracing/proteomics study in Brassica napus reveals the chronology of proteomics events associated with N remobilisation during leaf senescence induced by nitrate limitation or starvation
Marie Desclos, Philippe Etienne, Laurent Coquet, Thierry Jouenne, Josette Bonnefoy, Raphaël Segura, Sandrine Reze, Alain Ourry, Jean-Christophe Avice
PROTEOMICS (2009) 9(13): 3580-3608
Comparative proteomic analyses of the nuclear envelope and pore complex suggests a wide range of heretofore unexpected functions
Dzmitry G. Batrakou, Alastair R.W. Kerr, Eric C. Schirmer
Journal of Proteomics (2009) 72(1): 56-70
The clavesin family: neuron-specific lipid- and clathrin-binding Sec14 proteins regulating lysosomal morphology
Katoh Y, Ritter B, Gaffry T, Blondeau F, Honing S, McPherson PS.
J Biol Chem Early Edition: published 3-Aug-2009
Proteomic analysis of resting and thrombin-stimulated platelets reveals the translocation and functional relevance of HIP-55 in platelets
Katherine L. Tucker, William J. Kaiser, Angela L. Bergeron, Hongbo Hu, Jing-fei Dong, Tse-Hua Tan, Jonathan M. Gibbins
PROTEOMICS (2009) 9(18): 4340-4354
iTRAQ-coupled 2-D LC-MS/MS analysis of protein profile associated with HBV-modulated DNA methylation
Dandan Niu, Jianjun Sui, Jianhua Zhang, Huixing Feng, Wei Ning Chen
PROTEOMICS (2009) 9(15): 3856-3868
Differential expression of cell surface proteins in human bone marrow mesenchymal stem cells cultured with or without basic fibroblast growth factor containing medium
Sang Kwang Lee, Yongtae Kim, Sung-Soo Kim, Jeong Hwa Lee, Kun Cho, Sang Sook Lee, Zee-Won Lee, Kyung-Hoon Kwon, Young Hye Kim, Haeyoung Suh-Kim, Jong Shin Yoo, Young Mok Park
PROTEOMICS (2009) 9(18): 4389-4405
Proteomic-based identification of maternal proteins in mature mouse oocytes
Zhang P, Ni X, Guo Y, Guo X, Wang Y, Zhou Z, Huo R, Sha J.
BMC Genomics (2009) 10(1): 348
2-D DIGE analysis of the proteome of extracts from peanut variants reveals striking differences in major allergen contents
Hendrik Schmidt, Christoph Gelhaus, Ties Latendorf, Melanie Nebendahl, Arnd Petersen, Susanne Krause, Matthias Leippe, Wolf-Meinhard Becker, Ottmar Janssen
PROTEOMICS (2009) 9(13): 3507-3521
Optimized protocol for the 2-DE of extracellular proteins from higher basidiomycetes inhabiting lignocellulose
Dorothea Fragner, Mojtaba Zomorrodi, Ursula Kües, Andrzej Majcherczyk
ELECTROPHORESIS (2009) 30(14): 2431-2441
Anti-thrombosis Repertoire of Blood-feeding Horsefly Salivary Glands
Dongying Ma, Yipeng Wang, Hailong Yang, Jing Wu, Shu An, Li Gao, Xueqing
Mol Cell Proteomics (2009) 8(9): 2071-2079
Proteomics-derived cerebrospinal fluid markers of autopsy-confirmed Alzheimer's disease
Roher AE, Maarouf CL, Sue LI, Hu Y, Wilson J, Beach TG.
Biomarkers Early Edition: published 24-Jul-2009
Tetracycline treatment targeting Wolbachia affects expression of an array of proteins in Brugia malayi parasite
Anil Dangi, Satish Vedi, Jeetendra Kumar Nag, Sameer Paithankar, Mahendra Pratap Singh, Santosh Kumar Kar, Anuradha Dube, Shailja Misra-Bhattacharya
PROTEOMICS (2009) 9(17): 4192-4208
2nd Combined Working Group and Management Committee Meeting of Urine and Kidney Proteomics COST Action 29-30 March 2009, Nafplio, Greece
Antonia Vlahou, Guenter Allmaier, Teresa Attwood, Erik Bongcam-Rudloff, Aris Charonis, Jorgen Frokiaer, Harald Mischak, Joost Schanstra, Goce Spasovski, EuroKUP
PROTEOMICS - CLINICAL APPLICATIONS (2009) 3(9): 1017-1022
MALDI-MS-NIST library approach for colorectal cancer diagnosis
Simone Cristoni, Laura Molin, Antonella Lai, Luigi Rossi Bernardi, Salvatore Pucciarelli, Marco Agostini, Chiara Bedin, Donato Nitti, Roberta Seraglia, Ombretta Repetto, Vincenza Flora Dibari, Rosaria Orlandi, Pablo Martínez-Lozano Sinues, Pietro Traldi
Rapid Communications in Mass Spectrometry (2009) 23(17): 2839-2845
Pancreatic Cancer: Proteomic Approaches to a Challenging Disease
Tonack S, Aspinall-O'Dea M, Neoptolemos JP, Costello E.
Pancreatology (2009) 9(5): 567-576
Characterization of de novo synthesized proteins released from human colorectal tumour explants
Hong Jun Shi, Richard Stubbs, Kylie Hood
ELECTROPHORESIS (2009) 30(14): 2442-2453
Proteomic Analysis in Aortic Media of Patients With Marfan Syndrome Reveals Increased Activity of Calpain 2 in Aortic Aneurysms
Pilop C, Aregger F, Gorman RC, Brunisholz R, Gerrits B, Schaffner T, Gorman JH 3rd, Matyas G, Carrel T, Frey BM.
Circulation Early Edition: published 31-Aug-2009
A Novel Antimicrobial Peptide from Crotalaria pallida Seeds with Activity Against Human and Phytopathogens
Pelegrini PB, Farias LR, Saude AC, Costa FT, Bloch C Jr, Silva LP, Oliveira AS, Gomes CE, Sales MP, Franco OL.
Curr Microbiol Early Edition: published 30-Jul-2009
A broad screen for targets of immune complexes decorating arthritic joints highlights deposition of nucleosomes in rheumatoid arthritis
Monach PA, Hueber W, Kessler B, Tomooka BH, Benbarak M, Simmons BP, Wright J, Thornhill TS, Monestier M, Ploegh H, Robinson WH, Mathis D, Benoist C.
Proc Natl Acad Sci U S A Early Edition: published 31-Aug-2009
Comparative proteome profile of immature rat ovary during primordial follicle assembly and development
Ningling Wang, Ping Zhang, Xuejiang Guo, Jin Xie, Ran Huo, Fuqiang Wang, Lin Chen, Jian Shen, Zuomin Zhou, Qinghua Shi, Baige Zhao, Jiahao Sha
PROTEOMICS (2009) 9(13): 3425-3434
Human plasma carboxylesterase 1, a novel serologic biomarker candidate for hepatocellular carcinoma
Keun Na, Eun-Young Lee, Hyoung-Joo Lee, Kwang-Youl Kim, Hanna Lee, Seul-Ki Jeong, An-Sung Jeong, Sang Yun Cho, Sun A. Kim, Si Young Song, Kyung Sik Kim, Sung Won Cho, Hoguen Kim, Young-Ki Paik
PROTEOMICS (2009) 9(16): 3989-3999
Antidotes against venomous animals: State of the art and prospectives
G.P. Espino-Solis, L. Riaño-Umbarila, B. Becerril, L.D. Possani
Journal of Proteomics (2009) 72(2): 183-199
Proteome Analysis of Plasmodium falciparum Extracellular Secretory Antigens
at Asexual Blood Stages Reveals a Cohort of Proteins with Possible Roles in
Mol Cell Proteomics (2009) 8(9): 2102-2118
Proteomics of uveal melanomas suggests HSP-27 as a possible surrogate marker of chromosome 3 loss
Coupland SE, Vorum H, Mandal N, Kalirai H, Honoré B, Urbak SF, Lake SL, Dopierala J, Damato BE.
Invest Ophthalmol Vis Sci Early Edition: published 30-Jul-2009
Role of protein tyrosine nitration in neurodegenerative diseases and atherosclerosis
Lee JR, Kim JK, Lee SJ, Kim KP.
Arch Pharm Res (2009) 32(8): 1109-18
Novel functional profiling approach combining reverse phase protein microarrays and human 3-D ex vivo tissue cultures: Expression of apoptosis-related proteins in human colon cancer
Farzaneh Pirnia, Michael Pawlak, Gerhard G. Thallinger, Berthold Gierke, Markus F. Templin, Andi Kappeler, Daniel C. Betticher, Beat Gloor, Markus M. Borner
PROTEOMICS (2009) 9(13): 3535-3548
Interpreting the proteome and peptidome in transplantation
Sigdel TK, Klassen RB, Sarwal MM.
Adv Clin Chem (2009) 47: 139-69
Selective detection of phosphatidylethanol homologues in blood as biomarkers for alcohol consumption by LC-ESI-MS/MS
H. Gnann, W. Weinmann, C. Engelmann, F. M. Wurst, G. Skopp, M. Winkler, A. Thierauf, V. Auwärter, S. Dresen, N. Ferreirós Bouzas
Journal of Mass Spectrometry (2009) 44(9): 1293-1299
Lectin-based glycoproteomics to explore and analyze hepatocellular carcinoma-related glycoprotein markers
Zhi Dai, Jian Zhou, Shuang-Jian Qiu, Yin-Kun Liu, Jia Fan
ELECTROPHORESIS (2009) 30(17): 2957-2966
Transferrin dipstick as a potential novel test for colon cancer screening: a comparative study with immuno fecal occult blood test
Sheng JQ, Li SR, Wu ZT, Xia CH, Wu X, Chen J, Rao J.
Cancer Epidemiol Biomarkers Prev (2009) 18(8): 2182-5
Searching for serum tumor markers for colorectal cancer using a 2-D DIGE approach
Yanlei Ma, Jiayuan Peng, Long Huang, Weijie Liu, Peng Zhang, Huanlong Qin
ELECTROPHORESIS (2009) 30(15): 2591-2599
S100A6 binds to annexin 2 in pancreatic cancer cells and promotes pancreatic cancer cell motility
Nedjadi T, Kitteringham N, Campbell F, Jenkins RE, Park BK, Navarro P, Ashcroft F, Tepikin A, Neoptolemos JP, Costello E.
Br J Cancer Early Edition: published 1-Sep-2009
Tissue Expression of Manganese Superoxide Dismutase Is a Candidate Prognostic Marker for Glioblastoma
Park CK, Jung JH, Moon MJ, Kim YY, Kim JH, Park SH, Kim CY, Paek SH, Kim DG, Jung HW, Cho BK.
Oncology (2009) 77(3-4): 178-181
Bee, wasp and ant venomics pave the way for a component-resolved diagnosis of sting allergy
Dirk C. de Graaf, Maarten Aerts, Ellen Danneels, Bart Devreese
Journal of Proteomics (2009) 72(2): 145-154
Use of narrow-range peptide IEF to improve detection of lung adenocarcinoma markers in plasma and pleural effusion
Maria Pernemalm, Luigi De Petris, Hanna Eriksson, Eva Brandén, Hirsh Koyi, Lena Kanter, Rolf Lewensohn, Janne Lehtiö
PROTEOMICS (2009) 9(13): 3414-3424
Proteomic analysis of cells in the early stages of herpes simplex virus type-1 infection reveals widespread changes in the host cell proteome
Robin Antrobus, Kyle Grant, Bevin Gangadharan, David Chittenden, Roger D. Everett, Nicole Zitzmann, Chris Boutell
PROTEOMICS (2009) 9(15): 3913-3927
Fibroblast protein profile analysis highlights the role of oxidative stress and vitamin K recycling in the pathogenesis of pseudoxanthoma elasticum
Federica Boraldi, Giulia Annovi, Deanna Guerra, Chiara Paolinelli DeVincenzi, Maria Inmaculada Garcia-Fernandez, Fulvio Panico, Giorgio De Santis, Roberta Tiozzo, Ivonne Ronchetti, Daniela Quaglino
PROTEOMICS - CLINICAL APPLICATIONS (2009) 3(9): 1084-1098
Differential proteomic analysis of nasal polyps, chronic sinusitis, and normal nasal mucosa tissues
Min-Man W, Hong S, Zhi-Qiang X, Xue-Ping F, Chang-Qi L, Dan L.
Otolaryngol Head Neck Surg (2009) 141(3): 364-8
Human monoclonal ScFv neutralize lethal Thai cobra, Naja kaouthia, neurotoxin
Kasem Kulkeaw, Yuwaporn Sakolvaree, Potjanee Srimanote, Pongsri Tongtawe, Santi Maneewatch, Nitat Sookrung, Anchalee Tungtrongchitr, Pramuan Tapchaisri, Hisao Kurazono, Wanpen Chaicumpa
Journal of Proteomics (2009) 72(2): 270-282
Application of proteomic analysis to renal disease in the clinic
Bruce A. Julian, Hitoshi Suzuki, Goce Spasovski, Yusuke Suzuki, Yasuhiko Tomino, Jan Novak
PROTEOMICS - CLINICAL APPLICATIONS (2009) 3(9): 1023-1028
Proteomic analysis of ?-catenin activation in mouse liver by DIGE analysis identifies glucose metabolism as a new target of the Wnt pathway
Philippe Chafey, Laetitia Finzi, Raphael Boisgard, Michèle Caüzac, Guillem Clary, Cédric Broussard, Jean-Paul Pégorier, François Guillonneau, Patrick Mayeux, Luc Camoin, Bertrand Tavitian, Sabine Colnot, Christine Perret
PROTEOMICS (2009) 9(15): 3889-3900
Identification of Antigenic Proteins Associated with Trichloroethylene-Induced Autoimmune Disease by Serological Proteome Analysis
Liu J, Xing X, Huang H, Jiang Y, He H, Xu X, Yuan J, Zhou L, Yang L, Zhuang Z.
Toxicol Appl Pharmacol Early Edition: published 30-Jul-2009
Tumor proteomic profiling predicts the susceptibility of breast cancer to chemotherapy
He J, Shen D, Chung DU, Saxton RE, Whitelegge JP, Faull KF, Chang HR.
Int J Oncol (2009) 35(4): 683-92
Differential expression profiling of the synaptosome proteome in a rat model of antipsychotic resistance
Ji B, Zhang Z, Zhang M, Zhu H, Zhou K, Yang J, Li Y, Sun L, Feng G, Wang Y, He L, Wan C.
Brain Res Early Edition: published 3-Aug-2009
Analysis of ?-globulin mobility on routine clinical CE equipment: Exploring its molecular basis and potential clinical utility
Dieter Vanderschaeghe, Evi Debruyne, Hans Van Vlierberghe, Nico Callewaert, Joris Delanghe
ELECTROPHORESIS (2009) 30(15): 2617-2623
Analysis of the differential proteome of human erythroblasts during in vitro erythropoiesis by 2-D DIGE
Ben M. Richardson, Kate J. Heesom, Steve F. Parsons, Dave J. Anstee, Jan Frayne
PROTEOMICS - CLINICAL APPLICATIONS (2009) 3(9): 1123-1134
Proteomic analysis in cyclosporin a-induced overgrowth of human gingival fibroblasts
Jung JY, Kang GC, Jeong YJ, Kim SH, Kwak YG, Kim WJ.
Biol Pharm Bull (2009) 32(8): 1480-5
Identification of glial-cell-line-derived neurotrophic factor-regulated proteins of striatum in mouse model of Parkinson disease
Zhen Hong, Jun Liu, Li Xia, Jing Pan, Qin Xiao, Guoqiang Lu, Liang Liang, Sheng-Di Chen
PROTEOMICS - CLINICAL APPLICATIONS (2009) 3(9): 1072-1083
Differential protein expression profiling of myocardial tissue in a mouse model of hypertrophic cardiomyopathy
Lam L, Tsoutsman T, Arthur J, Semsarian C.
J Mol Cell Cardiol Early Edition: published 26-Aug-2009
A proteomic strategy to identify novel serum biomarkers for liver cirrhosis and hepatocellular cancer in individuals with fatty liver disease
Gray J, Chattopadhyay D, Beale GS, Patman GL, Miele L, King BP, Stewart S, Hudson M, Day CP, Manas DM, Reeves HL.
BMC Cancer (2009) 9(1): 271
Proteomic analysis of differentially expressed proteins in hepatitis B virus-related hepatocellular carcinoma tissues
Li N, Long Y, Fan X, Liu H, Li C, Chen L, Wang Z.
J Exp Clin Cancer Res (2009) 28(1): 122
High-throughput molecular analysis in lung cancer: insights into biology and potential clinical applications
Ocak S, Sos ML, Thomas RK, Massion PP.
Eur Respir J (2009) 34(2): 489-506
Association of the actin-binding protein transgelin with lymph node metastasis in human colorectal cancer
Lin Y, Buckhaults PJ, Lee JR, Xiong H, Farrell C, Podolsky RH, Schade RR, Dynan WS.
Neoplasia (2009) 11(9): 864-73
Preterm labor biomarker discovery in serum using 3 proteomic profiling methodologies
Stella CL, Bennett MR, Devarajan P, Greis K, Wyder M, Macha S, Rao M, Jodicke C, Moussa H, How HY, Myatt L, Webster R, Sibai BM.
Am J Obstet Gynecol Early Edition: published 26-Aug-2009
Comparative proteomic analysis of lung cancer cell line and lung fibroblast cell line
Rubporn A, Srisomsap C, Subhasitanont P, Chokchaichamnankit D, Chiablaem K, Svasti J, Sangvanich P.
Cancer Genomics Proteomics (2009) 6(4): 229-37
Urinary Peptidome May Predict Renal Function Decline in Type 1 Diabetes and Microalbuminuria
Merchant ML, Perkins BA, Boratyn GM, Ficociello LH, Wilkey DW, Barati MT, Bertram CC, Page GP, Rovin BH, Warram JH, Krolewski AS, Klein JB.
J Am Soc Nephrol Early Edition: published 30-Jul-2009
Sources of urinary proteins and their analysis by urinary proteomics for the detection of biomarkers of disease
Bruce A. Julian, Hitoshi Suzuki, Yusuke Suzuki, Yasuhiko Tomino, Goce Spasovski, Jan Novak
PROTEOMICS - CLINICAL APPLICATIONS (2009) 3(9): 1029-1043
Proteomic analysis of a matrix stone: a case report
Canales BK, Anderson L, Higgins L, Frethem C, Ressler A, Kim IW, Monga M.
Urol Res Early Edition: published 4-Sep-2009
Regression of polypoid nasal mucosa after systemic corticosteroid therapy: A proteomics study
Deroee AF, Oweinah J, Naraghi M, Hosemann W, Athari B, Volker U, Scharf C.
Am J Rhinol Allergy Early Edition: published 31-Aug-2009
Novel and Unique Diagnostic Biomarkers for Bacillus anthracis Infection
Sela-Abramovich S, Chitlaru T, Gat O, Grosfeld H, Cohen O, Shafferman A.
Appl Environ Microbiol Early Edition: published 31-Jul-2009
Changes in the urinary proteome post-operatively in renal cancer patients - a reflection of tumour or kidney removal?
Sheryl H. Sim, David A. Cairns, David N. Perkins, Jianhe Peng, Anthea J. Stanley, Douglas Thompson, Andrew Lewington, Peter J. Selby, Rosamonde E. Banks
PROTEOMICS - CLINICAL APPLICATIONS (2009) 3(9): 1112-1122
Identification of apolipoproteinA1 reduction in the polycystic kidney by proteomics analysis of the Mxi1-deficient mouse
Kyung Hyun Yoo, Yo Na Kim, Min Joo Lee, Je Kyung Seong, Jong Hoon Park
PROTEOMICS (2009) 9(15): 3824-3832
Increased lipid peroxidation in Down syndrome mouse models
Ishihara K, Amano K, Takaki E, Ebrahim AS, Shimohata A, Shibazaki N, Inoue I, Takaki M, Ueda Y, Sago H, Epstein CJ, Yamakawa K.
J Neurochem Early Edition: published 23-Jul-2009
Proteomics and the lung: Analysis of bronchoalveolar lavage fluid
Praveen Govender, Michael J. Dunn, Seamas C. Donnelly
PROTEOMICS - CLINICAL APPLICATIONS (2009) 3(9): 1044-1051
Autoantibody to glial fibrillary acidic protein in the sera of cattle with bovine spongiform encephalopathy
Sachiko Nomura, Taku Miyasho, Naoyuki Maeda, Katsumi Doh-ura, Hiroshi Yokota
PROTEOMICS (2009) 9(16): 4029-4035
Proteomics of rat prostate lobes treated with 2-N-hydroxylamino-1-methyl-6-phenylimidazo[4,5-b]pyridine, 5alpha-dihydrotestosterone, individually and in combination
Boyiri T, Somiari RI, Russell S, Aliaga C, El-Bayoumy K.
Int J Oncol (2009) 35(3): 559-67
Serum biomarkers of vascular cognitive impairment evaluated by bead-based proteomic technology
Xi L, Junjian Z, Yumin L, Yunwen L, Hongbin W.
Neurosci Lett Early Edition: published 23-Jul-2009
Profiling of rat urinary proteomic patterns associated with drug-induced nephrotoxicity using CE coupled with MS as a potential model for detection of drug-induced adverse effects
Harald Mischak, Parvaneh Espandiari, Nakissa Sadrieh, Joseph Hanig
PROTEOMICS - CLINICAL APPLICATIONS (2009) 3(9): 1062-1071
Plasma proteome profiling of von Hippel-Lindau disease after total and subtotal nephrectomy: A preliminary study
Opatrná S, Chiangjong W, KorabeÄná M, Sintiprungrat K, Sinchaikul S, Chen ST, MatÄ›joviÄ M, Thongboonkerd V.
Clin Biochem Early Edition: published 25-Aug-2009
Comparison of two genetically related Entamoeba histolytica cell lines derived from the same isolate with different pathogenic properties
Laura Biller, Hendrik Schmidt, Eberhard Krause, Christoph Gelhaus, Jenny Matthiesen, Ghassan Handal, Hannelore Lotter, Ottmar Janssen, Egbert Tannich, Iris Bruchhaus
PROTEOMICS (2009) 9(17): 4107-4120
Combinatorial peptide ligand libraries for urine proteome analysis: Investigation of different elution systems
Giovanni Candiano, Veronica Dimuccio, Maurizio Bruschi, Laura Santucci, Rosanna Gusmano, Egisto Boschetti, Pier Giorgio Righetti, Gian Marco Ghiggeri
ELECTROPHORESIS (2009) 30(14): 2405-2411
Urine proteomics for profiling of human disease using high accuracy mass spectrometry
Alex Kentsis, Flavio Monigatti, Kevin Dorff, Fabien Campagne, Richard Bachur, Hanno Steen
PROTEOMICS - CLINICAL APPLICATIONS (2009) 3(9): 1052-1061
Proteome-guided search for influenza A B-cell epitopes
Lucchese G, Stufano A, Kanduc D.
FEMS Immunol Med Microbiol Early Edition: published 14-Jul-2009
Identification and Evaluation of a Combination of Chlamydial Antigens to Support the Diagnosis of Severe and Invasive Chlamydia trachomatis Infections
Forsbach-Birk V, Simnacher U, Pfrepper KI, Soutschek E, Kiselev AO, Lampe MF, Meyer T, Straube E, Essig A.
Clin Microbiol Infect Early Edition: published 1-Sep-2009
Toward a Successful Clinical Neuroproteomics The 11th HUPO Brain Proteome Project Workshop 3 March, 2009, Kolymbari, Greece
Young Hye Kim, Katrin Marcus, Lea Tenenholz Grinberg, Heike Goehler, Jens Wiltfang, Christian Stephan, Martin Eisenacher, Tanja Hardt, Lennart Martens, Michael J. Dunn, Young Mok Park, Helmut E. Meyer
PROTEOMICS - CLINICAL APPLICATIONS (2009) 3(9): 1012-1016
Aberrant Processing of Plasma Vitronectin and High-Molecular-Weight Kininogen Precedes the Onset of Preeclampsia
Blumenstein M, Prakash R, Cooper GJ, North RA.
Reprod Sci Early Edition: published 5-Aug-2009
Protein composition of liver cyst fluid from the BALB/c-cpk/+ mouse model of autosomal recessive polycystic kidney disease
Xianyin Lai, Bonnie L. Blazer-Yost, Vincent H. Gattone II, Monalisa N. Muchatuta, Frank A. Witzmann
PROTEOMICS (2009) 9(14): 3775-3782
Effects of moderate versus deep hypothermic circulatory arrest and selective cerebral perfusion on cerebrospinal fluid proteomic profiles in a piglet model of cardiopulmonary bypass
Allibhai T, Digeronimo R, Whitin J, Salazar J, To-Sang Yu T, Ling XB, Cohen H, Dixon P, Madan A.
J Thorac Cardiovasc Surg Early Edition: published 28-Jul-2009
Local complement activation triggers neutrophil recruitment to the site of thrombus formation in acute myocardial infarction
Distelmaier K, Adlbrecht C, Jakowitsch J, Winkler S, Dunkler D, Gerner C, Wagner O, Lang IM, Kubicek M.
Thromb Haemost (2009) 102(3): 564-72
Unfavorable prognostic value of human PEDF decreased in high-grade prostatic intraepithelial neoplasia: a differential proteomics approach
Qingyi Z, Lin Y, Junhong W, Jian S, Weizhou H, Long M, Zeyu S, Xiaojian G.
Cancer Invest (2009) 27(7): 794-801
Naturally Presented Peptides on Major Histocompatibility Complex I and II
Molecules Eluted from Central Nervous System of Multiple Sclerosis Patients
Mol Cell Proteomics (2009) 8(9): 2090-2101
Proteomic analysis of differentiating neuroblastoma cells treated with sub-lethal neurite inhibitory concentrations of diazinon: identification of novel biomarkers of effect
Harris W, Sachana M, Flaskos J, Hargreaves AJ.
Toxicol Appl Pharmacol Early Edition: published 29-Jul-2009
Snake venomics and antivenomics: Proteomic tools in the design and control of antivenoms for the treatment of snakebite envenoming
José MarÃa Gutiérrez, Bruno Lomonte, Guillermo León, Albeto Alape-Girón, Marietta Flores-DÃaz, Libia Sanz, Yamileth Angulo, Juan J. Calvete
Journal of Proteomics (2009) 72(2): 165-182
Quantitative proteomic profiling identifies new renal targets of copper(II)-selective chelation in the reversal of diabetic nephropathy in rats
Deming Gong, Xiuyin Chen, Martin Middleditch, Liangdong Huang, Greeshma Vazhoor Amarsingh, Shiva Reddy, Jun Lu, Shaoping Zhang, Katya Ruggiero, Anthony R. J. Phillips, Garth J. S. Cooper
PROTEOMICS (2009) 9(18): 4309-4320
Urinary Protein Profiles in a Rat Model for Diabetic Complications
Daniela M. Schlatzer, Jean-Eudes Dazard, Moyez Dharsee, Rob M. Ewing,
Mol Cell Proteomics (2009) 8(9): 2145-2158
Proteomic characterization of thiazolidinedione regulation of obese adipose secretome in Zucker obese rats
Xiaoli Chen, Desmond Hunt, Samuel W. Cushman, Sonja Hess
PROTEOMICS - CLINICAL APPLICATIONS (2009) 3(9): 1099-1111
Disruption of glutamate receptors at Shank-postsynaptic platform in Alzheimer's disease
Gong Y, Lippa CF, Zhu J, Lin Q, Rosso AL.
Brain Res Early Edition: published 24-Jul-2009
A rat-to-human search for proteomic alterations reveals transgelin as a biomarker relevant to colorectal carcinogenesis and liver metastasis
Jiayuan Peng, Qingfu Zhang, Yanlei Ma, Yu Wang, Long Huang, Peng Zhang, Jie Chen, Huanlong Qin
ELECTROPHORESIS (2009) 30(17): 2976-2987
A Proteomic Investigation into the Human Cervical Cancer Cell Line HeLa Treated with Dicitratoytterbium(III) Complex
Shen L, Liu Q, Ni J, Hong G.
Chem Biol Interact Early Edition: published 23-Jul-2009
Evolution of organelle-associated protein profiling
Wei Yan, Ruedi Aebersold, Elaine W. Raines
Journal of Proteomics (2009) 72(1): 4-11
Differential proteomic analysis of apoplastic proteins during initial phase of salt stress in rice
Guo Y, Song Y.
Plant Signal Behav (2009) 4(2): 121-2
Improved resolution in the acidic and basic region of 2-DE of insect antennae proteins using hydroxyethyl disulfide
Patricia Acín, Josep Rayó, Angel Guerrero, Carmen Quero
ELECTROPHORESIS (2009) 30(15): 2613-2616
Shotgun proteomic analysis of the fat body during metamorphosis of domesticated silkworm (Bombyx mori)
Yang H, Zhou Z, Zhang H, Chen M, Li J, Ma Y, Zhong B.
Amino Acids Early Edition: published 3-Sep-2009
An efficient method for the extraction of chloroplast proteins compatible for 2-DE and MS analysis
Pengxiang Fan, Xuchu Wang, Tingyun Kuang, Yinxin Li
ELECTROPHORESIS (2009) 30(17): 3024-3033
A comparative analysis of embryo and endosperm proteome from seeds of Jatropha curcas
Liu H, Liu YJ, Yang MF, Shen SH.
J Integr Plant Biol (2009) 51(9): 850-7
Differential Expression of Sarcoplasmic and Myofibrillar Proteins of Rat Soleus Muscle during Denervation Atrophy
Sato Y, Shimizu M, Mizunoya W, Wariishi H, Tatsumi R, Buchman VL, Ikeuchi Y.
Biosci Biotechnol Biochem Early Edition: published 7-Aug-2009
A proteomic view into infection of greyback canegrubs (Dermolepida albohirtum) by Metarhizium anisopliae
Manalil NS, Junior Te'o VS, Braithwaite K, Brumbley S, Samson P, Nevalainen KM.
Curr Genet Early Edition: published 3-Sep-2009
Sperm surface proteomics: from protein lists to biological function
Brewis IA, Gadella BM.
Mol Hum Reprod Early Edition: published 28-Aug-2009
Proteomic analysis identifies mitochondrial metabolic enzymes as major discriminators between different stages of the failing human myocardium
Urbonavicius S, Wiggers H, Bøtker HE, Nielsen TT, Kimose HH, Østergaard M, Lindholt JS, Vorum H, Honoré B.
Acta Cardiol (2009) 64(4): 511-22
Association of a novel mitochondrial protein M19 with mitochondrial nucleoids
Sumitani M, Kasashima K, Ohta E, Kang D, Endo H.
J Biochem Early Edition: published 30-Jul-2009
Proteomic analysis of total cellular proteins of human neutrophils
Tomazella GG, da Silva I, Laure HJ, Rosa JC, Chammas R, Wiker HG, de Souza GA, Greene LJ.
Proteome Science (2009) 7(1): 32
Large-Scale Proteome Profile of the Zebrafish (Danio rerio) Gill for Physiological and Biomarker Discovery Studies
De Souza AG, Maccormack TJ, Wang N, Li L, Goss GG.
Zebrafish Early Edition: published 30-Aug-2009
Gel-based proteomics approach to the study of metabolic changes in pear tissue during storage
Pedreschi R, Hertog M, Robben J, Lilley KS, Karp NA, Baggerman G, Vanderleyden J, Nicolaï B.
J Agric Food Chem (2009) 57(15): 6997-7004
Effective elimination of nucleic acids from bacterial protein samples for optimized blue native polyacrylamide gel electrophoresis
Jingdan Liang, Qiule Niu, Xinping Xu, Yuanming Luo, Xiufen Zhou, Zixin Deng, Zhijun Wang
ELECTROPHORESIS (2009) 30(14): 2454-2459
Subcellular proteomic characterization of the high-temperature stress response of the cyanobacterium Spirulina platensis
Hongsthong A, Sirijuntarut M, Yutthanasirikul R, Senachak J, Kurdrid P, Cheevadhanarak S, Tanticharoen M.
Proteome Science (2009) 7(1): 33
Addressing the effects of Salmonella internalization in host cell signaling on a reverse-phase protein array
Cristina Molero, Isabel Rodríguez-Escudero, Ainel Alemán, Rafael Rotger, María Molina, Víctor J. Cid
PROTEOMICS (2009) 9(14): 3652-3665
Proteomic profiling of Cronobacter turicensis 3032, a food-borne opportunistic pathogen
Paula Carranza, Isabel Hartmann, Angelika Lehner, Roger Stephan, Peter Gehrig, Jonas Grossmann, Simon Barkow-Oesterreicher, Bernd Roschitzki, Leo Eberl, Kathrin Riedel
PROTEOMICS (2009) 9(13): 3564-3579
Proteome analysis of plant-induced proteins of Agrobacterium tumefaciens
Rosen R, Matthysse AG, Becher D, Biran D, Yura T, Hecker M, Ron EZ.
FEMS Microbiol Ecol (2003) 44(3): 355-60
Identification of novel Mycobacterium bovis antigens by dissection of crude protein fractions
Meikle V, Alito A, Llera AS, Gioffré A, Peralta A, Buddle BM, Cataldi A.
Clin Vaccine Immunol Early Edition: published 29-Jul-2009
Esculentin-1b(1-18) - a membrane-active antimicrobial peptide that synergizes with antibiotics and modifies the expression level of a limited number of proteins in Escherichia coli
Marcellini L, Borro M, Gentile G, Rinaldi AC, Stella L, Aimola P, Barra D, Mangoni ML.
FEBS J Early Edition: published 2-Sep-2009
Novel and Unique Diagnostic Biomarkers for Bacillus anthracis Infection
Sela-Abramovich S, Chitlaru T, Gat O, Grosfeld H, Cohen O, Shafferman A.
Appl Environ Microbiol Early Edition: published 31-Jul-2009
Proteome reference map for the plant growth-promoting bacterium Pseudomonas putida UW4
Zhenyu Cheng, Owen Z. Woody, Jiming Song, Bernard R. Glick, Brendan J. McConkey
PROTEOMICS (2009) 9(17): 4271-4274
Physiological adaptation of Corynebacterium glutamicum to benzoate as alternative carbon source - a membrane proteome-centric view
Ute Haußmann, Su-Wei Qi, Dirk Wolters, Matthias Rögner, Shuang-Jiang Liu, Ansgar Poetsch
PROTEOMICS (2009) 9(14): 3635-3651
Proteomic analysis of date palm (Phoenix dactylifera L.) responses to endophytic colonization by entomopathogenic fungi
Sonia Gómez-Vidal, Jesús Salinas, Manuel Tena, Luis Vicente Lopez-Llorca
ELECTROPHORESIS (2009) 30(17): 2996-3005
Analysis of differential proteomes in pathogenic and non-pathogenic Leptospira: Potential pathogenic and virulence factors
Visith Thongboonkerd, Wararat Chiangjong, Putita Saetun, Supachok Sinchaikul, Shui-Tein Chen, Uraiwan Kositanont
PROTEOMICS (2009) 9(13): 3522-3534
Differential Membrane Proteome Analysis Reveals Novel Proteins Involved in
the Degradation of Aromatic Compounds in Geobacter metallireducens
Mol Cell Proteomics (2009) 8(9): 2159-2169
Transcriptome and proteome analyses of adaptive responses to methyl methanesulfonate in Escherichia coli K-12 and ada mutant strains
Baek JH, Han MJ, Lee SY, Yoo JS.
BMC Microbiol (2009) 9(1): 186
The serum protein binding of pharmacologically active gallium(III) compounds assessed by hyphenated CE-MS techniques
Michael Groessl, Anna Bytzek, Christian G. Hartinger
ELECTROPHORESIS (2009) 30(15): 2720-2727
Regression of polypoid nasal mucosa after systemic corticosteroid therapy: A proteomics study
Deroee AF, Oweinah J, Naraghi M, Hosemann W, Athari B, Volker U, Scharf C.
Am J Rhinol Allergy Early Edition: published 31-Aug-2009
Effect of cadmium in the clam Ruditapes decussatus assessed by proteomic analysis
Chora S, Starita-Geribaldi M, Guigonis JM, Samson M, Roméo M, Bebianno MJ.
Aquat Toxicol Early Edition: published 28-Jul-2009
Tetracycline treatment targeting Wolbachia affects expression of an array of proteins in Brugia malayi parasite
Anil Dangi, Satish Vedi, Jeetendra Kumar Nag, Sameer Paithankar, Mahendra Pratap Singh, Santosh Kumar Kar, Anuradha Dube, Shailja Misra-Bhattacharya
PROTEOMICS (2009) 9(17): 4192-4208
Esculentin-1b(1-18) - a membrane-active antimicrobial peptide that synergizes with antibiotics and modifies the expression level of a limited number of proteins in Escherichia coli
Marcellini L, Borro M, Gentile G, Rinaldi AC, Stella L, Aimola P, Barra D, Mangoni ML.
FEBS J Early Edition: published 2-Sep-2009
Proteomic and enzymatic response of poplar to cadmium stress
Pol Kieffer, Peter Schröder, Jacques Dommes, Lucien Hoffmann, Jenn Renaut, Jean-François Hausman
Journal of Proteomics (2009) 72(3): 379-396
Tumor proteomic profiling predicts the susceptibility of breast cancer to chemotherapy
He J, Shen D, Chung DU, Saxton RE, Whitelegge JP, Faull KF, Chang HR.
Int J Oncol (2009) 35(4): 683-92
Anti-thrombosis Repertoire of Blood-feeding Horsefly Salivary Glands
Dongying Ma, Yipeng Wang, Hailong Yang, Jing Wu, Shu An, Li Gao, Xueqing
Mol Cell Proteomics (2009) 8(9): 2071-2079
Proteomic identification of proteins translocated to membrane microdomains upon treatment of fibroblasts with the glycosphingolipid, C8-?-D-lactosylceramide
Seong-youl Kim, Teng-ke Wang, Raman Deep Singh, Christine L. Wheatley, David L. Marks, Richard E. Pagano
PROTEOMICS (2009) 9(18): 4321-4328
Proteogenomic monitoring of Geobacter physiology during stimulated uranium bioremediation
Wilkins MJ, Verberkmoes NC, Williams KH, Callister SJ, Mouser PJ, Elifantz H, N'guessan AL, Thomas BC, Nicora CD, Shah MB, Abraham P, Lipton MS, Lovley DR, Hettich RL, Long PE, Banfield JF.
Appl Environ Microbiol Early Edition: published 28-Aug-2009
A Novel Antimicrobial Peptide from Crotalaria pallida Seeds with Activity Against Human and Phytopathogens
Pelegrini PB, Farias LR, Saude AC, Costa FT, Bloch C Jr, Silva LP, Oliveira AS, Gomes CE, Sales MP, Franco OL.
Curr Microbiol Early Edition: published 30-Jul-2009
Transcriptome and proteome analyses of adaptive responses to methyl methanesulfonate in Escherichia coli K-12 and ada mutant strains
Baek JH, Han MJ, Lee SY, Yoo JS.
BMC Microbiol (2009) 9(1): 186
Resolution and identification of major peanut allergens using a combination of fluorescence two-dimensional differential gel electrophoresis, Western blotting and Q-TOF mass spectrometry
Hubert Chassaigne, Virginie Trégoat, Jørgen V. Nørgaard, Soheila Maleki, Arjon J. van Hengel
Journal of Proteomics (2009) 72(3): 511-526
Effect of low doses of atorvastatin on the urinary peptide profile of kidney transplant patients
Pérez V, Navarro-Muñoz M, Bayés B, Lauzurica R, Pastor MC, Troya M, Bonet J, Ibernón M, Navarro M, Serra A, Núñez A, Romero R.
Transplant Proc (2009) 41(6): 2111-4
Human monoclonal ScFv neutralize lethal Thai cobra, Naja kaouthia, neurotoxin
Kasem Kulkeaw, Yuwaporn Sakolvaree, Potjanee Srimanote, Pongsri Tongtawe, Santi Maneewatch, Nitat Sookrung, Anchalee Tungtrongchitr, Pramuan Tapchaisri, Hisao Kurazono, Wanpen Chaicumpa
Journal of Proteomics (2009) 72(2): 270-282
Proteomic approaches to study structure, functions and toxicity of legume seeds lectins. Perspectives for the assessment of food quality and safety
Antonella Nasi, Gianluca Picariello, Pasquale Ferranti
Journal of Proteomics (2009) 72(3): 527-538
Toxicogenomic analysis of N-nitrosomorpholine induced changes in rat liver: Comparison of genomic and proteomic responses and anchoring to histopathological parameters
Oberemm A, Ahr HJ, Bannasch P, Ellinger-Ziegelbauer H, Glückmann M, Hellmann J, Ittrich C, Kopp-Schneider A, Kramer PJ, Krause E, Kröger M, Kiss E, Richter-Reichhelm HB, Scholz G, Seemann K, Weimer M, Gundert-Remy U.
Toxicol Appl Pharmacol Early Edition: published 27-Aug-2009
Determination of cyanobacterial cyclic peptide hepatotoxins in drinking water using CE
Grace Birungi, Sam Fong Yau Li
ELECTROPHORESIS (2009) 30(15): 2737-2742
Searching for allergens in maize kernels via proteomic tools
Elisa Fasoli, Elide A. Pastorello, Laura Farioli, Joseph Scibilia, Giancarlo Aldini, Marina Carini, Adriano Marocco, Egisto Boschetti, Pier Giorgio Righetti
Journal of Proteomics (2009) 72(3): 501-510
Proteomic profiling of L-cysteine induced selenite resistance in Enterobacter sp. YSU
Jasenec A, Barasa N, Kulkarni S, Shaik N, Moparthi S, Konda V, Caguiat J.
Proteome Science (2009) 7(1): 30
Liver proteome response of largemouth bass (Micropterus salmoides) exposed to several environmental contaminants: Potential insights into biomarker development
Sanchez BC, Ralston-Hooper KJ, Kowalski KA, Dorota Inerowicz H, Adamec J, Sepúlveda MS.
Aquat Toxicol Early Edition: published 13-Aug-2009
Snake venomics of the Siamese Russell's viper (Daboia russelli siamensis) - Relation to pharmacological activities
Michaela Risch, Dessislava Georgieva, Martin von Bergen, Nico Jehmlich, Nicolay Genov, Raghuvir K. Arni, Christian Betzel
Journal of Proteomics (2009) 72(2): 256-269
Use of intein-mediated protein ligation strategies for the fabrication of functional protein arrays
Chattopadhaya S, Abu Bakar FB, Yao SQ.
Methods Enzymol (2009) 462: 195-223
High-density Peptide microarrays for reliable identification of phosphorylation sites and upstream kinases
Thiele A, Zerweck J, Weiwad M, Fischer G, Schutkowski M.
Methods Mol Biol (2009) 570: 203-19
Dissecting protein function and signaling using protein microarrays
Wolf-Yadlin A, Sevecka M, Macbeath G.
Curr Opin Chem Biol Early Edition: published 4-Aug-2009
Characterization of Kinase Target Phosphorylation Consensus Motifs Using Peptide SPOT Arrays
Leung GC, Murphy JM, Briant D, Sicheri F.
Methods Mol Biol (2009) 570: 187-95
Combinatorial peptide ligand libraries for urine proteome analysis: Investigation of different elution systems
Giovanni Candiano, Veronica Dimuccio, Maurizio Bruschi, Laura Santucci, Rosanna Gusmano, Egisto Boschetti, Pier Giorgio Righetti, Gian Marco Ghiggeri
ELECTROPHORESIS (2009) 30(14): 2405-2411
Multimerization domains for antibody phage display and antibody production
Thie H, Binius S, Schirrmann T, Hust M, Dübel S.
N Biotechnol Early Edition: published 21-Jul-2009
Addressing the effects of Salmonella internalization in host cell signaling on a reverse-phase protein array
Cristina Molero, Isabel Rodríguez-Escudero, Ainel Alemán, Rafael Rotger, María Molina, Víctor J. Cid
PROTEOMICS (2009) 9(14): 3652-3665
Using Peptide array to identify binding motifs and interaction networks for modular domains
Li SS, Wu C.
Methods Mol Biol (2009) 570: 67-76
Protein chip analysis of pluripotency-associated proteins in NIH3T3 fibroblast
Brijesh S. Ajjappala, Myung-Sun Kim, Eung-Yoon Kim, Jae-Hwan Kim, In-Cheol Kang, Kwang-Hyun Baek
PROTEOMICS (2009) 9(16): 3968-3978
Photonic immobilization of high-density protein arrays using Fourier optics
Esben Skovsen, Ane B. Kold, Maria Teresa Neves-Petersen, Steffen B. Petersen
PROTEOMICS (2009) 9(15): 3945-3948
Targeted analysis of protein citrullination using chemical modification and tandem mass spectrometry
Maria Stensland, Anders Holm, Andrea Kiehne, Burkhard Fleckenstein
Rapid Communications in Mass Spectrometry (2009) 23(17): 2754-2762
Phosphorylation of the SSBP2 and ABL proteins by the ZNF198-FGFR1 fusion kinase seen in atypical myeloproliferative disorders as revealed by phosphopeptide-specific MS
Chitta Kasyapa, Ting-Lei Gu, Lalitha Natarajan, Roberto Polakiewicz, John K. Cowell
PROTEOMICS (2009) 9(16): 3979-3988
Identification and Quantification of Glycoproteins Using Ion-Pairing
Normal-phase Liquid Chromatography and Mass Spectrometry
Mol Cell Proteomics (2009) 8(9): 2170-2185
Specific enrichment methods for glycoproteome research
Zhang L, Lu H, Yang P.
Anal Bioanal Chem Early Edition: published 4-Sep-2009
In Vivo Phosphorylation Site Mapping in Mouse Cardiac Troponin I by High Resolution Top-Down Electron Capture Dissociation Mass Spectrometry: Ser22/23 Are the Only Sites Basally Phosphorylated
Ayaz-Guner S, Zhang J, Li L, Walker JW, Ge Y.
Biochemistry Early Edition: published 5-Aug-2009
O-Glycosylated 24 kDa human growth hormone has a mucin-like biantennary disialylated tetrasaccharide attached at Thr-60
Juan J. Bustamante, Leticia Gonzalez, Christopher A. Carroll, Susan T. Weintraub, Roberto M. Aguilar, Jesus Muñoz, Andrew O. Martinez, Luis S. Haro
PROTEOMICS (2009) 9(13): 3474-3488
Lectin-based glycoproteomics to explore and analyze hepatocellular carcinoma-related glycoprotein markers
Zhi Dai, Jian Zhou, Shuang-Jian Qiu, Yin-Kun Liu, Jia Fan
ELECTROPHORESIS (2009) 30(17): 2957-2966
Characterization of Kinase Target Phosphorylation Consensus Motifs Using Peptide SPOT Arrays
Leung GC, Murphy JM, Briant D, Sicheri F.
Methods Mol Biol (2009) 570: 187-95
Proteomic approaches to study structure, functions and toxicity of legume seeds lectins. Perspectives for the assessment of food quality and safety
Antonella Nasi, Gianluca Picariello, Pasquale Ferranti
Journal of Proteomics (2009) 72(3): 527-538
Mass spectrometric analysis of carbohydrates labeled with a biotinylated tag
Petra Kapková
Rapid Communications in Mass Spectrometry (2009) 23(17): 2775-2784
TxXIIIA, an atypical homodimeric conotoxin found in the Conus textile venom
Loïc Quinton, Nicolas Gilles, Edwin De Pauw
Journal of Proteomics (2009) 72(2): 219-226
Carboxy group derivatization for enhanced electron-transfer dissociation mass spectrometric analysis of phosphopeptides
Lijuan Zhang, Yawei Xu, Haojie Lu, Pengyuan Yang
PROTEOMICS (2009) 9(16): 4093-4097
Mining the Thiol Proteome for Sulfenic Acid Modifications Reveals New Targets for Oxidation in Cells
Leonard SE, Reddie KG, Carroll KS.
ACS Chem Biol Early Edition: published 1-Aug-2009
Exploring and profiling protein function with Peptide arrays
Tapia VE, Ay B, Volkmer R.
Methods Mol Biol (2009) 570: 3-17
Mobility shift detection of phosphorylation on large proteins using a Phos-tag SDS-PAGE gel strengthened with agarose
Eiji Kinoshita, Emiko Kinoshita-Kikuta, Hiromi Ujihara, Tohru Koike
PROTEOMICS (2009) 9(16): 4098-4101
Role of protein tyrosine nitration in neurodegenerative diseases and atherosclerosis
Lee JR, Kim JK, Lee SJ, Kim KP.
Arch Pharm Res (2009) 32(8): 1109-18
A survey of the Arabidopsis thaliana mitochondrial phosphoproteome
Jun Ito, Nicolas L. Taylor, Ian Castleden, Wolfram Weckwerth, A. Harvey Millar, Joshua L. Heazlewood
PROTEOMICS (2009) 9(17): 4229-4240
Mass spectrometry study of PRL-3 phosphatase inactivation by disulfide bond formation and cysteine into glycine conversion
Laura Orsatti, Federica Innocenti, Paola Lo Surdo, Fabio Talamo, Gaetano Barbato
Rapid Communications in Mass Spectrometry (2009) 23(17): 2733-2740
Distinguishing a phosphate ester prodrug from its isobaric sulfate metabolite by mass spectrometry without the metabolite standard
Steven T. Wu, Kai Cao, Samuel J. Bonacorsi Jr., Hongwei Zhang, Mohammed Jemal
Rapid Communications in Mass Spectrometry (2009) 23(19): 3107-3113
Proteomic identification of cytosolic proteins that undergo arginine methylation during rat liver regeneration
Sinae An, Miyong Yun, Yun Gyu Park, Gil Hong Park
ELECTROPHORESIS (2009) 30(14): 2412-2421
Identification, analysis, and prediction of protein ubiquitination sites
Radivojac P, Vacic V, Haynes C, Cocklin RR, Mohan A, Heyen JW, Goebl MG, Iakoucheva LM.
Proteins Early Edition: published 22-Jul-2009
Phosphoproteomic analysis of the human pathogen Trypanosoma cruzi at the epimastigote stage
Ernesto S. Nakayasu, Matthew R. Gaynor, Tiago J. P. Sobreira, Jeremy A. Ross, Igor C. Almeida
PROTEOMICS (2009) 9(13): 3489-3506
2-D Difference in gel electrophoresis combined with Pro-Q Diamond staining: A successful approach for the identification of kinase/phosphatase targets
Laura Orsatti, Eleonora Forte, Licia Tomei, Marianna Caterino, Antonello Pessi, Fabio Talamo
ELECTROPHORESIS (2009) 30(14): 2469-2476
Proposal for a standard system for drawing structural diagrams of N- and O-linked carbohydrates and related compounds
David J. Harvey, Anthony H. Merry, Louise Royle, Matthew P. Campbell, Raymond A. Dwek, Pauline M. Rudd
PROTEOMICS (2009) 9(15): 3796-3801
Epidermal Growth Factor Receptor Phosphorylation Sites Ser991 and Tyr998
Are Implicated in the Regulation of Receptor Endocytosis and
Mol Cell Proteomics (2009) 8(9): 2131-2144
Characterization of S-thiolation on secreted proteins from E. coli by mass spectrometry
Peiran Liu, Malloree A. Tarnowski, Brian W. O'Mara, Wei Wu, Haiying Zhang, James K. Tamura, Michael S. Ackerman, Li Tao, Michael J. Grace, Reb J. Russell
Rapid Communications in Mass Spectrometry (2009) 23(20): 3343-3349
Proteomic revelation: SUMO changes partners when the heat is on
Flick K, Kaiser P.
Sci Signal (2009) 2(81): pe45
The host-defence skin peptide profiles of Peron's Tree Frog Litoria peronii in winter and summer. Sequence determination by electrospray mass spectrometry and activities of the peptides
Daniel Bilusich, Rebecca J. Jackway, Ian F. Musgrave, Michael J. Tyler, John H. Bowie
Rapid Communications in Mass Spectrometry (2009) 23(17): 2628-2636
Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana
Alexandra M.E. Jones, Daniel MacLean, David J. Studholme, Antonio Serna-Sanz, Erik Andreasson, John P. Rathjen, Scott C. Peck
Journal of Proteomics (2009) 72(3): 439-451
A close look at human IgG sialylation and subclass distribution after lectin fractionation
Johannes Stadlmann, Alfred Weber, Martin Pabst, Heinz Anderle, Renate Kunert, Hartmut J. Ehrlich, Hans Peter Schwarz, Friedrich Altmann
PROTEOMICS (2009) 9(17): 4143-4153
Spectral clustering in peptidomics studies helps to unravel modification profile of biologically active peptides and enhances peptide identification rate
Gerben Menschaert, Tom T. M. Vandekerckhove, Bart Landuyt, Eisuke Hayakawa, Liliane Schoofs, Walter Luyten, Wim Van Criekinge
PROTEOMICS (2009) 9(18): 4381-4388
The fate of GPI-less procyclin and characterisation of sialylated non-GPI anchored surface coat molecules of procyclic form Trypanosoma brucei
Güther ML, Beattie K, Lamont DJ, James J, Prescott AR, Ferguson MA.
Eukaryot Cell Early Edition: published 24-Jul-2009
Comparison of collision- versus electron-induced dissociation of Pt(II) ternary complexes of histidine- and methionine-containing peptides
Linda Feketeová, Victor Ryzhov, Richard A. J. O'Hair
Rapid Communications in Mass Spectrometry (2009) 23(19): 3133-3143