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SPS' DigestIssue 64, 13-Nov-2009 |
The complexity of the secreted NPA and FAR lipid-binding protein families of Haemonchus contortus revealed by an iterative proteomics-bioinformatics approach
Kuang L, Colgrave ML, Bagnall NH, Knox MR, Qian M, Wijffels G.
Mol Biochem Parasitol Early Edition: published 14-Jul-2009
YADA: a tool for taking the most out of high-resolution spectra
Paulo C. Carvalho, Tao Xu, Xuemei Han, Daniel Cociorva, Valmir C. Barbosa, and John R. Yates, III
Bioinformatics (2009) 25(20): 2734-2736
Mapping the human membrane proteome: a majority of the human membrane proteins can be classified according to function and evolutionary origin
Sallman Almen M, Nordstrom KJ, Fredriksson R, Schioth HB.
BMC Biol (2009) 7(1): 50
Analytical and computational approaches to define the Aspergillus niger secretome
Tsang A, Butler G, Powlowski J, Panisko EA, Baker SE.
Fungal Genet Biol (2009) 46(Suppl 1): S153-S160
SubChlo: Predicting protein subchloroplast locations with pseudo-amino acid composition and the evidence-theoretic K-nearest neighbor (ET-KNN) algorithm
Du P, Cao S, Li Y.
J Theor Biol Early Edition: published 10-Aug-2009
PiSQRD: a web server for decomposing proteins into quasi-rigid dynamical domains
T. Aleksiev, R. Potestio, F. Pontiggia, S. Cozzini, and C. Micheletti
Bioinformatics (2009) 25(20): 2743-2744
Enhancement of beta-sheet assembly by cooperative hydrogen bonds potential
Ami Levy-Moonshine, El-ad David Amir, and Chen Keasar
Bioinformatics (2009) 25(20): 2639-2645
Probability-Based Shotgun Cross-Linking Sites Analysis
Lee YJ.
J Am Soc Mass Spectrom Early Edition: published 10-Jul-2009
High-accuracy identification and bioinformatic analysis of in vivo protein phosphorylation sites in yeast
Florian Gnad, Lyris M. F. de Godoy, Jürgen Cox, Nadin Neuhauser, Shubin Ren, Jesper V. Olsen, Matthias Mann
PROTEOMICS (2009) 9(20): 4642-4652
Challenges and approaches to statistical design and inference in high-dimensional investigations
Gadbury GL, Garrett KA, Allison DB.
Methods Mol Biol (2009) 553: 181-206
massXpert 2: a cross-platform software environment for polymer chemistry modelling and simulation/analysis of mass spectrometric data
Filippo Rusconi
Bioinformatics (2009) 25(20): 2741-2742
Defining the Human Deubiquitinating Enzyme Interaction Landscape
Sowa ME, Bennett EJ, Gygi SP, Harper JW.
Cell Early Edition: published 15-Jul-2009
Knowledge-guided inference of domain-domain interactions from incomplete protein-protein interaction networks
Mei Liu, Xue-wen Chen, and Raja Jothi
Bioinformatics (2009) 25(19): 2492-2499
Proteomics data repositories
Michael Riffle, Jimmy K. Eng
PROTEOMICS (2009) 9(20): 4653-4663
A new taxonomy-based protein fold recognition approach based on autocross-covariance transformation
Qiwen Dong, Shuigeng Zhou, and Jihong Guan
Bioinformatics (2009) 25(20): 2655-2662
Functional Analysis of OMICs Data and Small Molecule Compounds in an Integrated "Knowledge-Based" Platform
Nikolsky Y, Kirillov E, Zuev R, Rakhmatulin E, Nikolskaya T.
Methods Mol Biol (2009) 563: 177-96
Environmental adaptation of proteins: Regression models with simple physicochemical properties
Thorvaldsen S, Ytterstad E.
Comput Biol Chem Early Edition: published 9-Jul-2009
PRIDE Converter: making proteomics data-sharing easy
Barsnes H, VizcaĂno JA, Eidhammer I, Martens L.
Nat Biotechnol (2009) 27(7): 598-9
When less can yield more - Computational preprocessing of MS/MS spectra for peptide identification
Bernhard Y. Renard, Marc Kirchner, Flavio Monigatti, Alexander R. Ivanov, Juri Rappsilber, Dominic Winter, Judith A. J. Steen, Fred A. Hamprecht, Hanno Steen
PROTEOMICS (2009) 9(21): 4978-4984
Outside the Unusual Cell Wall of the Hyperthermophilic Archaeon Aeropyrum
pernix K1
Mol Cell Proteomics (2009) 8(11): 2570-2581
Development and Evaluation of Normalization Methods for Label-free Relative
Quantification of Endogenous Peptides
Mol Cell Proteomics (2009) 8(10): 2285-2295
Normalization of peak intensities in bottom-up MS-based proteomics using singular value decomposition
Yuliya V. Karpievitch, Thomas Taverner, Joshua N. Adkins, Stephen J. Callister, Gordon A. Anderson, Richard D. Smith, and Alan R. Dabney
Bioinformatics (2009) 25(19): 2573-2580
Median-modified Wiener filter provides efficient denoising, preserving spot edge and morphology in 2-DE image processing
Carlo V. Cannistraci, Franco M. Montevecchi, Massimo Alessio
PROTEOMICS (2009) 9(21): 4908-4919
Proteopathogen, a protein database for studying Candida albicans - host interaction
Vital Vialás, Rubén Nogales-Cadenas, César Nombela, Alberto Pascual-Montano, Concha Gil
PROTEOMICS (2009) 9(20): 4664-4668
MISTRAL: a tool for energy-based multiple structural alignment of proteins
Cristian Micheletti and Henri Orland
Bioinformatics (2009) 25(20): 2663-2669
Protein Identification False Discovery Rates for Very Large Proteomics Data
Sets Generated by Tandem Mass Spectrometry
Mol Cell Proteomics (2009) 8(11): 2405-2417
Normalization and Statistical Analysis of Quantitative Proteomics Data
Generated by Metabolic Labeling
Mol Cell Proteomics (2009) 8(10): 2227-2242
Approaching Drosophila development through proteomic tools and databases: at the hub of the post-genomic era
Carmena A.
Mech Dev Early Edition: published 10-Aug-2009
Comparison of feature selection and classification for MALDI-MS data
Liu Q, Sung AH, Qiao M, Chen Z, Yang JY, Yang MQ, Huang X, Deng Y.
BMC Genomics (2009) 10(Suppl 1): S3
Expertomica metabolite profiling: getting more information from LC-MS using the stochastic systems approach
Jan Urban, Jan Vanek, Jiri Soukup, and Dalibor Stys
Bioinformatics (2009) 25(20): 2764-2767
A mouse protein interactome through combined literature mining with multiple sources of interaction evidence
Li X, Cai H, Xu J, Ying S, Zhang Y.
Amino Acids Early Edition: published 8-Aug-2009
ANCHOR: web server for predicting protein binding regions in disordered proteins
Zsuzsanna Dosztanyi, Balint Meszaros, and Istvan Simon
Bioinformatics (2009) 25(20): 2745-2746
T-REKS: identification of Tandem REpeats in sequences with a K-meanS based algorithm
Julien Jorda and Andrey V. Kajava
Bioinformatics (2009) 25(20): 2632-2638
The effect of carbon source on the secretome of Kluyveromyces lactis
Catherine L. Madinger, Shamik S. Sharma, Brian P. Anton, Lauren G. Fields, Michelle L. Cushing, Julie Canovas, Christopher H. Taron, Jack S. Benner
PROTEOMICS (2009) 9(20): 4744-4754
Analysis of the Pseudomonas putida CA-3 proteome during growth on styrene under nitrogen limiting and non limiting conditions
Nikodinovic-Runic J, Flanagan M, Hume AR, Cagney G, O'Connor KE.
Microbiology Early Edition: published 16-Jul-2009
Proteomic Analysis of Microtubule-associated Proteins during Macrophage
Activation
Mol Cell Proteomics (2009) 8(11): 2500-2514
Proteome Analysis of Leptospira interrogans Virulent Strain
Vieira ML, Pimenta DC, de Morais ZM, Vasconcellos SA, Nascimento AL.
Open Microbiol J (2009) 3: 69-74.
ICAT as a potential enhancer of monocytic differentiation: implications from the comparative proteome analysis of the HL60 cell line stimulated by all-trans retinoic acid and NSC67657
Wang W, Zhang X, Deng K, Huang S, Mao X, Fu Y, Yi Z, Yan Y, Qiu Z.
Cell Biochem Funct Early Edition: published 30-Jun-2009
Proteomic analysis of wild type and arsenite resistant Leishmania donovani
Sharma S, Singh G, Chavan HD, Dey CS.
Exp Parasitol Early Edition: published 10-Aug-2009
ERp46 is reduced by high glucose and regulates insulin content in pancreatic beta cells
Alberti AA, Karamessinis P, Peroulis M, Kypreou K, Kavvadas P, Pagakis S, Politis P, Charonis A.
Am J Physiol Endocrinol Metab Early Edition: published 21-Jul-2009
Fatty acid profiling and proteomic analysis of Salmonella enterica serotype Typhimurium inactivated with supercritical carbon dioxide
Kim SR, Kim HT, Park HJ, Kim S, Choi HJ, Hwang GS, Yi JH, Ryu DH, Kim KH.
Int J Food Microbiol Early Edition: published 24-Jun-2009
Proteomic analysis of proteins differentially expressed in uterine lymphocytes obtained from wild-type and NOD mice
Li C, Wang W, Wang H, Zhong Y, Di J, Lin Y.
J Cell Biochem Early Edition: published 21-Jul-2009
Comparison of two label-free global quantitation methods, APEX and 2D gel electrophoresis, applied to the Shigella dysenteriae proteome
Kuntumalla S, Braisted JC, Huang ST, Parmar PP, Clark DJ, Alami H, Zhang Q, Donohue-Rolfe A, Tzipori S, Fleischmann RD, Peterson SN, Pieper R.
Proteome Science (2009) 7(1): 22
Proteome changes in human bronchoalveolar cells following styrene exposure indicate involvement of oxidative stress in the molecular-response mechanism
Nora Mörbt, Iljana Mögel, Stefan Kalkhof, Ralph Feltens, Carmen Röder-Stolinski, Jiang Zheng, Carsten Vogt, Irina Lehmann, Martin von Bergen
PROTEOMICS (2009) 9(21): 4920-4933
Cell-based proteome analysis: The first stage in the pipeline for biomarker discovery
Poschmann G, Sitek B, Sipos B, Hamacher M, Vonend O, Meyer HE, StĂĽhler K.
Biochim Biophys Acta Early Edition: published 10-Jul-2009
Proteomic and biochemical analyses unveil tight interaction of ataxin-3 with tubulin
Mazzucchelli S, De Palma A, Riva M, D'Urzo A, Pozzi C, Pastori V, Comelli F, Fusi P, Vanoni M, Tortora P, Mauri P, Regonesi ME.
Int J Biochem Cell Biol Early Edition: published 7-Aug-2009
Proteomics Analysis of Nucleolar SUMO-1 Target Proteins upon Proteasome
Inhibition
Mol Cell Proteomics (2009) 8(10): 2243-2255
Estrogen Receptor-{beta} Activation Results in S-Nitrosylation of Proteins Involved in Cardioprotection
Lin J, Steenbergen C, Murphy E, Sun J.
Circulation Early Edition: published 6-Jul-2009
Enhanced detection method for corneal protein identification using shotgun proteomics
Meade ML, Shiyanov P, Schlager JJ.
Proteome Science (2009) 7(1): 23
Analysis of Candida albicans plasma membrane proteome
Virginia Cabezón, Arancha Llama-Palacios, César Nombela, Lucía Monteoliva, Concha Gil
PROTEOMICS (2009) 9(20): 4770-4786
Matrix metalloproteinase proteomics: substrates, targets, and therapy
Morrison CJ, Butler GS, RodrĂguez D, Overall CM.
Curr Opin Cell Biol Early Edition: published 16-Jul-2009
Proteomic analysis of the differential protein expression reveals nuclear GAPDH in activated T lymphocytes
Sheng WY, Wang TC.
PLoS One (2009) 4(7): e6322
Proteins involved in difference of sorbitol fermentation rates of the toxigenic and nontoxigenic Vibrio cholerae El Tor strains revealed by comparative proteome analysis
Wang R, Zhang H, Qiu H, Gao S, Kan B.
BMC Microbiol (2009) 9(1): 135
Genetic variation and drought response in two Populusxeuramericana genotypes through 2-DE proteomic analysis of leaves from field and glasshouse cultivated plants
Bonhomme L, Monclus R, Vincent D, Carpin S, Claverol S, Lomenech AM, Labas V, Plomion C, Brignolas F, Morabito D.
Phytochemistry Early Edition: published 26-Jun-2009
Proteomic analysis of chromate-induced modifications in Pseudokirchneriella subcapitata
Vannini C, Marsoni M, Domingo G, Antognoni F, Biondi S, Bracale M.
Chemosphere Early Edition: published 3-Jul-2009
Evaluation of sample preparation methods for the analysis of papaya leaf proteins through two-dimensional gel electrophoresis
Rodrigues SP, Ventura JA, Zingali RB, Fernandes PM.
Phytochem Anal Early Edition: published 23-Jul-2009
Proteomics reveals lowering oxygen alters cytoskeletal and endoplasmatic stress proteins in human endothelial cells
Louise Řstergaard, Ulf Simonsen, Yvonne Eskildsen-Helmond, Henrik Vorum, Niels Uldbjerg, Bent Honoré, Michael J. Mulvany
PROTEOMICS (2009) 9(19): 4457-4467
A proteomic analysis of the salt, cadmium and peroxide stress responses in Candida albicans and the role of the Hog1 stress-activated MAPK in regulating the stress-induced proteome
Zhikang Yin, David Stead, Jan Walker, Laura Selway, Deborah A. Smith, Alistair J. P. Brown, Janet Quinn
PROTEOMICS (2009) 9(20): 4686-4703
The properties of hub proteins in a yeast-aggregated cell cycle network and its phase sub-networks
Xiaomei Wu, Jie Guo, Da-Yong Zhang, Kui Lin
PROTEOMICS (2009) 9(20): 4812-4824
A fractionation method to identify qauntitative changes in protein expression mediated by IGF-1 on the proteome of murine C2C12 myoblasts
King CC, Bouic K, Friedmann T.
Proteome Science (2009) 7(1): 28
HER2 carboxy terminal fragments regulate cell migration and cortactin phosphorylation
Garcia-Castillo J, Pedersen K, Angelini PD, Bech-Serra JJ, Colome N, Cunningham MP, Parra Palau JL, Canals F, Baselga J, Arribas J.
J Biol Chem Early Edition: published 8-Jul-2009
Analysis of interaction partners of H4 histone by a new proteomics approach
Evelyne Saade, Undine Mechold, Arman Kulyyassov, Damien Vertut, Marc Lipinski, Vasily Ogryzko
PROTEOMICS (2009) 9(21): 4934-4943
Metallomics integrated with proteomics in deciphering metal-related environmental issues
González-Fernández M, GarcĂa-Barrera T, Jurado J, Pueyo C, LĂłpez-Barea J, GĂłmez-Ariza JL.
Biochimie Early Edition: published 18-Jul-2009
Proteomics analysis of regenerating amphibian limbs: changes during the onset of regeneration
King MW, Neff AW, Mescher AL.
Int J Dev Biol (2009) 53(7): 955-69
Proteomic identification of aldo-keto reductase AKR1B10 induction after treatment of colorectal cancer cells with the proteasome inhibitor bortezomib
Loeffler-Ragg J, Mueller D, Gamerith G, Auer T, Skvortsov S, Sarg B, Skvortsova I, Schmitz KJ, Martin HJ, Krugmann J, Alakus H, Maser E, Menzel J, Hilbe W, Lindner H, Schmid KW, Zwierzina H.
Mol Cancer Ther Early Edition: published 30-Jun-2009
Proteomic study of the effects of microcystin-LR on organelle and membrane proteins in medaka fish liver
Malécot M, Mezhoud K, Marie A, Praseuth D, Puiseux-Dao S, Edery M.
Aquat Toxicol Early Edition: published 26-Jun-2009
Experimental design and environmental parameters affect Rhodospirillum rubrum S1H response to space flight
Mastroleo F, Van Houdt R, Leroy B, Benotmane MA, Janssen A, Mergeay M, Vanhavere F, Hendrickx L, Wattiez R, Leys N.
ISME J Early Edition: published 2-Jul-2009
Drastic increase of myosin light chain MLC-2 in senescent skeletal muscle indicates fast-to-slow fibre transition in sarcopenia of old age
Gannon J, Doran P, Kirwan A, Ohlendieck K.
Eur J Cell Biol Early Edition: published 17-Jul-2009
Immunoproteomic analysis of the second-generation merozoite proteins of Eimeria tenella
Liu L, Xu L, Yan F, Yan R, Song X, Li X.
Vet Parasitol Early Edition: published 23-May-2009
Differential gene expression in the mandibular glands of queen and worker honeybees, Apis mellifera L.: Implications for caste-selective aldehyde and fatty acid metabolism
Hasegawa M, Asanuma S, Fujiyuki T, Kiya T, Sasaki T, Endo D, Morioka M, Kubo T.
Insect Biochem Mol Biol Early Edition: published 7-Aug-2009
Morph-dependent expression and subcellular localization of host serine carboxypeptidase in bacteriocytes of the pea aphid associated with degradation of the endosymbiotic bacterium buchnera
Nishikori K, Kubo T, Morioka M.
Zoolog Sci (2009) 26(6): 415-20
Identification of Rat Prostatic Secreted Proteins using Mass Spectrometric Analysis and Androgen-Dependent mRNA Expression
Fujimoto N, Suzuki T, Ohta S, Kitamura S.
J Androl Early Edition: published 3-Jul-2009
The response of the marine bacterium Sphingopyxis alaskensis to solar radiation assessed by quantitative proteomics
Matallana-Surget S, Joux F, Raftery MJ, Cavicchioli R.
Environ Microbiol Early Edition: published 10-Jul-2009
Nuclear Receptor-Coregulator Interaction Profiling Identifies TRIP3 as a
Novel Peroxisome Proliferator-activated Receptor {gamma} Cofactor
Mol Cell Proteomics (2009) 8(10): 2212-2226
Immunoproteomic analysis of whole proteins from male and female adult Haemonchus contortus
Yan F, Xu L, Liu L, Yan R, Song X, Li X.
Vet J Early Edition: published 26-Jun-2009
Comparative analyses of the proteomes of leaves and flowers at various stages of development reveal organ-specific functional differentiation of proteins in soybean
Nagib Ahsan, Setsuko Komatsu
PROTEOMICS (2009) 9(21): 4889-4907
Proteomic study of antibiotic resistance in Escherichia coli strains
Roncada P, Deriu F, Gaviraghi A, Martino PA, Bonizzi L.
Vet Res Commun Early Edition: published 3-Jul-2009
Proteomic analysis of mitochondria from Caenorhabditis elegans
Jing Li, Tanxi Cai, Peng Wu, Ziyou Cui, Xiulan Chen, Junjie Hou, Zhensheng Xie, Peng Xue, Linan Shi, Pingsheng Liu, John R. Yates III, Fuquan Yang
PROTEOMICS (2009) 9(19): 4539-4553
Glucose-regulated Protein 78 Is an Intracellular Antiviral Factor against
Hepatitis B Virus
Mol Cell Proteomics (2009) 8(11): 2582-2594
An Integrated Approach of Differential Mass Spectrometry and Gene Ontology
Analysis Identified Novel Proteins Regulating Neuronal Differentiation and
Mol Cell Proteomics (2009) 8(10): 2350-2367
Label-free quantitative proteome analysis of skeletal tissues under mechanical load
Zhang WB, Wang L.
J Cell Biochem Early Edition: published 10-Aug-2009
A combined proteomic and genetic analysis identifies a role for the lipid desaturase Desat1 in starvation-induced autophagy in Drosophila
Köhler K, Brunner E, Guan XL, Boucke K, Greber UF, Mohanty S, Barth JM, Wenk MR, Hafen E.
Autophagy Early Edition: published 22-Oct-2009
A proteomic analysis of oligo(dT)-bound mRNP containing oxidative stress-induced Arabidopsis thaliana RNA-binding proteins ATGRP7 and ATGRP8
Schmidt F, Marnef A, Cheung MK, Wilson I, Hancock J, Staiger D, Ladomery M.
Mol Biol Rep Early Edition: published 12-Aug-2009
Pattern of recognition of Besnoitia besnoiti tachyzoite and bradyzoite antigens by naturally infected cattle
Fernández-GarcĂa A, Alvarez-GarcĂa G, Risco-Castillo V, Aguado-MartĂnez A, Marugán-Hernández V, Ortega-Mora LM.
Vet Parasitol Early Edition: published 24-Jun-2009
Proteomic characterization of copper stress response in Elsholtzia splendens roots and leaves
Li F, Shi J, Shen C, Chen G, Hu S, Chen Y.
Plant Mol Biol Early Edition: published 24-Jul-2009
Proline-rich Sequence Recognition: II. PROTEOMICS ANALYSIS OF Tsg101
UBIQUITIN-E2-LIKE VARIANT (UEV) INTERACTIONS
Mol Cell Proteomics (2009) 8(11): 2474-2486
Approaching Drosophila development through proteomic tools and databases: at the hub of the post-genomic era
Carmena A.
Mech Dev Early Edition: published 10-Aug-2009
Toward the proteome of the human peripheral blood eosinophil
Christof Straub, Konrad Pazdrak, Travis W. Young, Susan J. Stafford, Zheng Wu, John E. Wiktorowicz, Anthony M. Haag, Robert D. English, Kizhake V. Soman, Alexander Kurosky
PROTEOMICS - CLINICAL APPLICATIONS (2009) 3(10): 1151-1173
Proteomic identification of an MHC-binding peptidome from pancreas and breast cancer cell lines
Antwi K, Hanavan PD, Myers CE, Ruiz YW, Thompson EJ, Lake DF.
Mol Immunol Early Edition: published 15-Jul-2009
Proteomic analysis of murine Piwi proteins reveals a role for arginine methylation in specifying interaction with Tudor family members
Vagin VV, Wohlschlegel J, Qu J, Jonsson Z, Huang X, Chuma S, Girard A, Sachidanandam R, Hannon GJ, Aravin AA.
Genes Dev Early Edition: published 7-Jul-2009
MALDI-TOF MS-based drug susceptibility testing of pathogens: The example of Candida albicans and fluconazole
Carine Marinach, Alexandre Alanio, Martine Palous, Stéphanie Kwasek, Arnaud Fekkar, Jean-Yves Brossas, Sophie Brun, Georges Snounou, Christophe Hennequin, Dominique Sanglard, Annick Datry, Jean-Louis Golmard, Dominique Mazier
PROTEOMICS (2009) 9(20): 4627-4631
Genome analysis and genome-wide proteomics of Thermococcus gammatolerans, the most radioresistant organism known amongst the Archaea
Zivanovic Y, Armengaud J, Lagorce A, Leplat C, Guerin P, Dutertre M, Anthouard V, Forterre P, Wincker P, Confalonieri F.
Genome Biol (2009) 10(6): R70
Quantitative Proteomics of Seed Filling in Castor: Comparison with Soybean and Rapeseed Reveals Differences between Photosynthetic and Non-photosynthetic Seed Metabolism
Houston NL, Hajduch M, Thelen JJ.
Plant Physiol Early Edition: published 12-Aug-2009
Nanovesicles released by Dictyostelium cells: A potential carrier for drug delivery
Lavialle F, Deshayes S, Gonnet F, Larquet E, Kruglik SG, Boisset N, Daniel R, Alfsen A, Tatischeff I.
Int J Pharm Early Edition: published 6-Jul-2009
Transcriptional and proteomic profiling in a cellular model of DYT1 dystonia
Martin JN, Bair TB, Bode N, Dauer WT, Gonzalez-Alegre P.
Neuroscience Early Edition: published 5-Aug-2009
Gap-junction proteins in retinal development: new roles for the "nexus"
Cook JE, Becker DL.
Physiology (Bethesda) (2009) 24: 219-30.
Protein profiling analysis of skeletal muscle of a pufferfish, Takifugu rubripes
Lu J, Zheng J, Liu H, Li J, Chen H, Chen K.
Mol Biol Rep Early Edition: published 11-Aug-2009
Differential Proteomics Analysis of Specific Carbonylated Proteins in the Temporal Cortex of Aged Rats: The Deterioration of Antioxidant System
Wang Q, Zhao X, He S, Liu Y, An M, Ji J.
Neurochem Res Early Edition: published 28-Jun-2009
Inoculation-density-dependent responses and pathway shifts in Saccharomyces cerevisiae
Jing-Sheng Cheng, Ming-Zhu Ding, Hong-Chi Tian, Ying-Jin Yuan
PROTEOMICS (2009) 9(20): 4704-4713
The complexity of the secreted NPA and FAR lipid-binding protein families of Haemonchus contortus revealed by an iterative proteomics-bioinformatics approach
Kuang L, Colgrave ML, Bagnall NH, Knox MR, Qian M, Wijffels G.
Mol Biochem Parasitol Early Edition: published 14-Jul-2009
Proteome analysis of tobacco leaves under salt stress
Razavizadeh R, Ehsanpour AA, Ahsan N, Komatsu S.
Peptides Early Edition: published 29-Jun-2009
Intervention with fish oil, but not with docosahexaenoic acid, results in lower levels of hepatic soluble epoxide hydrolase with time in apoE knockout mice
Mavrommatis Y, Ross K, Rucklidge G, Reid M, Duncan G, Gordon MJ, Thies F, Sneddon A, de Roos B.
Br J Nutr Early Edition: published 13-Aug-2009
The protein scaffold NHERF-1 controls the amplitude and duration of localized protein kinase D activity
Kunkel MT, Garcia EL, Kajimoto T, Hall RA, Newton AC.
J Biol Chem Early Edition: published 6-Jul-2009
Proteomic comparison of four Eimeria tenella life-cycle stages: Unsporulated oocyst, sporulated oocyst, sporozoite and second-generation merozoite
Kalpana Lal, Elizabeth Bromley, Richard Oakes, Judith Helena Prieto, Sanya J. Sanderson, Dominic Kurian, Lawrence Hunt, John R. Yates III, Jonathan M. Wastling, Robert E. Sinden, Fiona M. Tomley
PROTEOMICS (2009) 9(19): 4566-4576
Shotgun proteome profile of Populus developing xylem
Udaya C. Kalluri, Gregory B. Hurst, Patricia K. Lankford, Priya Ranjan, Dale A. Pelletier
PROTEOMICS (2009) 9(21): 4871-4880
Dynamics of protein expression during pollen germination in canola (Brassica napus)
Sheoran IS, Pedersen EJ, Ross AR, Sawhney VK.
Planta Early Edition: published 23-Jul-2009
Proteomics view of a Rhizobium isolate response to arsenite [As(III)] stress
Mandal SM, Mandal M, Pati BR, Das AK, Ghosh AK.
Acta Microbiol Immunol Hung (2009) 56(2): 157-67
Dynamic changes in the extracellular proteome caused by absence of a pleiotropic regulator AdpA in Streptomyces griseus
Akanuma G, Hara H, Ohnishi Y, Horinouchi S.
Mol Microbiol Early Edition: published 4-Aug-2009
Comparative proteome analysis of Xanthomonas campestris pv. campestris in the interaction with the susceptible and the resistant cultivars of Brassica oleracea
Villeth GR, Reis FB Jr, Tonietto A, Huergo L, de Souza EM, Pedrosa FO, Franco OL, Mehta A.
FEMS Microbiol Lett Early Edition: published 14-Jul-2009
Proteomic analysis of the cold stress response in the moss, Physcomitrella patens
Xiaoqin Wang, Pingfang Yang, Xiaofeng Zhang, Yinong Xu, Tingyun Kuang, Shihua Shen, Yikun He
PROTEOMICS (2009) 9(19): 4529-4538
In Planta Proteomics and Proteogenomics of the Biotrophic Barley Fungal
Pathogen Blumeria graminis f. sp. hordei
Mol Cell Proteomics (2009) 8(10): 2368-2381
Proteomic characterization of the dynamic KSR-2 interactome, a signaling scaffold complex in MAPK pathway
Liu L, Channavajhala PL, Rao VR, Moutsatsos I, Wu L, Zhang Y, Lin LL, Qiu Y.
Biochim Biophys Acta Early Edition: published 26-Jun-2009
Whole proteome analysis of osteoprogenitor differentiation induced by disordered nanotopography and mediated by ERK signalling
Kantawong F, Burgess KE, Jayawardena K, Hart A, Burchmore RJ, Gadegaard N, Oreffo RO, Dalby MJ.
Biomaterials Early Edition: published 25-Jun-2009
Analytical and computational approaches to define the Aspergillus niger secretome
Tsang A, Butler G, Powlowski J, Panisko EA, Baker SE.
Fungal Genet Biol (2009) 46(Suppl 1): S153-S160
Outside the Unusual Cell Wall of the Hyperthermophilic Archaeon Aeropyrum
pernix K1
Mol Cell Proteomics (2009) 8(11): 2570-2581
Mitochondrial proteomics in experimental autoimmune uveitis oxidative stress
Saraswathy S, Rao NA.
Invest Ophthalmol Vis Sci Early Edition: published 2-Jul-2009
Echinococcus multilocularis: Proteomic analysis of the protoscoleces by two-dimensional electrophoresis and mass spectrometry
Wang Y, Cheng Z, Lu X, Tang C.
Exp Parasitol Early Edition: published 23-Jun-2009
Proteome and system ontology of hemorrhagic shock: exploring early constitutive changes in postshock mesenteric lymph
Peltz ED, Moore EE, Zurawel AA, Jordan JR, Damle SS, Redzic JS, Masuno T, Eun J, Hansen KC, Banerjee A.
Surgery (2009) 146(2): 347-57
Proteomic Analysis of the Interactions between Mycoplasma hyopneumoniae and Porcine Tracheal Ciliated Cells
Li YZ, Ho YP, Chen ST, Shiuan D.
Appl Biochem Biotechnol Early Edition: published 12-Aug-2009
Proline-rich Sequence Recognition: I. MARKING GYF AND WW DOMAIN ASSEMBLY
SITES IN EARLY SPLICEOSOMAL COMPLEXES
Mol Cell Proteomics (2009) 8(11): 2461-2473
PPE and PE_PGRS proteins of Mycobacterium marinum are transported via the type VII secretion system ESX-5
Abdallah AM, Verboom T, Weerdenburg EM, van Pittius NC, Mahasha PW, Jiménez C, Parra M, Cadieux N, Brennan MJ, Appelmelk BJ, Bitter W.
Mol Microbiol Early Edition: published 7-Jul-2009
Monitoring peptidase activities in complex proteomes by MALDI-TOF mass spectrometry
Villanueva J, Nazarian A, Lawlor K, Tempst P.
Nat Protoc (2009) 4(8): 1167-83
Proteomic analysis reveals novel binding partners of dysbindin, a schizophrenia-related protein
Hikita T, Taya S, Fujino Y, Taneichi-Kuroda S, Ohta K, Tsuboi D, Shinoda T, Kuroda K, Funahashi Y, Uraguchi-Asaki J, Hashimoto R, Kaibuchi K.
J Neurochem Early Edition: published 1-Jul-2009
Salt stress-induced alterations in the root proteome of barley genotypes with contrasting response towards salinity
Witzel K, Weidner A, Surabhi GK, Börner A, Mock HP.
J Exp Bot (2009) 60(12): 3545-57
Upc2p-associated differential protein expression in Candida albicans
Christopher F. Hoehamer, Edwin D. Cummings, George M. Hilliard, Joachim Morschhäuser, Phillip David Rogers
PROTEOMICS (2009) 9(20): 4726-4730
Dynamic Host Energetics and Cytoskeletal Proteomes in HIV-1-Infected Human Primary CD4 Cells: Analysis by Multiplexed Label-free Mass Spectrometry
Chan EY, Sutton JN, Jacobs JM, Bondarenko A, Smith RD, Katze MG.
J Virol Early Edition: published 8-Jul-2009
Mass spectrometric profiling of (neuro)-peptides in the worker honeybee, Apis mellifera
Boerjan B, Cardoen D, Bogaerts A, Landuyt B, Schoofs L, Verleyen P.
Neuropharmacology Early Edition: published 1-Jul-2009
Management of Oxidative Stress in Bacillus
Zuber P.
Annu Rev Microbiol Early Edition: published 1-May-2009
Proteomics Analysis of Lactobacillus casei Zhang, a New Probiotic Bacterium
Isolated from Traditional Home-made Koumiss in Inner Mongolia of China
Mol Cell Proteomics (2009) 8(10): 2321-2338
A comparative proteomic analysis of the simple amino acid repeat distributions in Plasmodia reveals lineage specific amino acid selection
Dalby AR.
PLoS One (2009) 4(7): e6231
Comparative proteome analysis of porcine follicular fluid and serum reveals that excessive ?2-macroglobulin in serum hampers successful expansion of cumulus-oocyte complexes
Jo Bijttebier, Kelly Tilleman, Maarten Dhaenens, Dieter Deforce, Ann Van Soom, Dominiek Maes
PROTEOMICS (2009) 9(19): 4554-4565
Proteomics analysis of mitochondrial proteins reveals overexpression of a mitochondrial protein chaperon, prohibitin, in cells expressing hepatitis C virus core protein
Tsutsumi T, Matsuda M, Aizaki H, Moriya K, Miyoshi H, Fujie H, Shintani Y, Yotsuyanagi H, Miyamura T, Suzuki T, Koike K.
Hepatology Early Edition: published 9-Jul-2009
Sheep and goat saliva proteome analysis: A useful tool for ingestive behavior research?
Lamy E, da Costa G, Santos R, Capela E Silva F, Potes J, Pereira A, Coelho AV, Sales Baptista E.
Physiol Behav Early Edition: published 14-Jul-2009
Comparative Study of GH-Transgenic and Non-Transgenic Amago Salmon (Oncorhynchus masou ishikawae) Allergenicity and Proteomic Analysis of Amago Salmon Allergens
Nakamura R, Satoh R, Nakajima Y, Kawasaki N, Yamaguchi T, Sawada JI, Nagoya H, Teshima R.
Regul Toxicol Pharmacol Early Edition: published 10-Aug-2009
Quantitative proteomics of nutrient limitation in the hydrogenotrophic methanogen Methanococcus maripaludis
Xia Q, Wang T, Hendrickson EL, Lie TJ, Hackett M, Leigh JA.
BMC Microbiol (2009) 9(1): 149
Diminished expression of dihydropteridine reductase is a potent biomarker for hypertensive vessels
Chang-Kwon Lee, Jin Soo Han, Kyung-Jong Won, Seung-Hyo Jung, Hyo-Jun Park, Hwan Myung Lee, Junghwan Kim, Young Shik Park, Hyun-Jung Kim, Pyo-Jam Park, Tae-Kyu Park, Bokyung Kim
PROTEOMICS (2009) 9(21): 4851-4858
Exploring the dynamics of the yeast proteome by means of 2-DE
Aurélie Massoni, Suzette Moes, Michel Perrot, Paul Jenoe, Hélian Boucherie
PROTEOMICS (2009) 9(20): 4674-4685
Long-term effect of platelet lysate on primary fibroblasts highlighted with a proteomic approach
Cipriani V, Ranzato E, Balbo V, Mazzucco L, Cavaletto M, Patrone M.
J Tissue Eng Regen Med Early Edition: published 10-Aug-2009
Mapping the human membrane proteome: a majority of the human membrane proteins can be classified according to function and evolutionary origin
Sallman Almen M, Nordstrom KJ, Fredriksson R, Schioth HB.
BMC Biol (2009) 7(1): 50
Characterization of papain-like isoenzymes from latex of Asclepias curassavica by molecular biology validated by proteomic approach
Obregón WD, Liggieri CS, Trejo SA, Avilés FX, Vairo-Cavalli SE, Priolo NS.
Biochimie Early Edition: published 10-Aug-2009
Using of chicken antibodies for metallothionein detection in human blood serum and cadmium-treated tumour cell lines after dot- and electroblotting
Sona Krizkova, Vojtech Adam, Tomas Eckschlager, Rene Kizek
ELECTROPHORESIS (2009) 30(21): 3726-3735
Comparative analyses of cell disruption methods for mitochondrial isolation in high-throughput proteomics study
Chaiyarit S, Thongboonkerd V.
Anal Biochem Early Edition: published 18-Jul-2009
Proteomic Profiling of Liver from Atlantic Salmon (Salmo salar) Fed Genetically Modified Soy Compared to the Near-Isogenic non-GM Line
Sissener NH, Martin SA, Cash P, Hevrøy EM, Sanden M, Hemre GI.
Mar Biotechnol (NY) Early Edition: published 17-Jul-2009
iTRAQ-based Proteomics Profiling Reveals Increased Metabolic Activity and
Cellular Cross-talk in Angiogenic Compared with Invasive Glioblastoma
Mol Cell Proteomics (2009) 8(11): 2595-2612
The Fusarium oxysporum cell wall proteome under adhesion-inducing conditions
Rafael Prados-Rosales, Jose L. Luque-Garcia, Raquel Martínez-López, Concha Gil, Antonio Di Pietro
PROTEOMICS (2009) 9(20): 4755-4769
Impact of Urbanization on the Proteome of Birch Pollen and Its Chemotactic Activity on Human Granulocytes
Bryce M, Drews O, Schenk MF, Menzel A, Estrella N, Weichenmeier I, Smulders MJ, Buters J, Ring J, Görg A, Behrendt H, Traidl-Hoffmann C.
Int Arch Allergy Immunol (2009) 151(1): 46-55
Differential expression proteomics to investigate responses and resistance to Orobanche crenata in Medicago truncatula
Castillejo MA, Maldonado AM, Dumas-Gaudot E, Fernandez-Aparicio M, Susin R, Rubiales D, Jorrin JV.
BMC Genomics (2009) 10(1): 294
Proteomic study of DBA/2J mice retina: Down-regulation of Integrin ?7 correlated with retinal ganglion cell death
Takashi Kanamoto, Takahiro Ue, Tomoko Yokoyama, Nazariy Souchelnytskyi, Yoshiaki Kiuchi
PROTEOMICS (2009) 9(21): 4962-4969
An insight into the transcriptome and proteome of the salivary gland of the stable fly, Stomoxys calcitrans
Wang X, Ribeiro JM, Broce AB, Wilkerson MJ, Kanost MR.
Insect Biochem Mol Biol Early Edition: published 1-Jul-2009
Proteomic analysis of endodontic infections by liquid chromatography-tandem mass spectrometry
Nandakumar R, Madayiputhiya N, Fouad AF.
Oral Microbiol Immunol (2009) 24(4): 347-352
Comparative proteome and transcriptome analyses of embryonic stem cells during embryoid body-based differentiation
Ali Fathi, Mohammad Pakzad, Adele Taei, Thore C. Brink, Leila Pirhaji, Guifré Ruiz, Mohammad Sharif Tabe Bordbar, Hamid Gourabi, James Adjaye, Hossein Baharvand, Ghasem Hosseini Salekdeh
PROTEOMICS (2009) 9(21): 4859-4870
Proteomic, functional and motif-based analysis of C-terminal Src kinase-interacting proteins
Guang Yang, Qingrun Li, Siyuan Ren, Xuefeng Lu, Longhou Fang, Wenchao Zhou, Fan Zhang, Feilai Xu, Zhe Zhang, Rong Zeng, Friedrich Lottspeich, Zhengjun Chen
PROTEOMICS (2009) 9(21): 4944-4961
A three-way proteomics strategy allows differential analysis of yeast mitochondrial membrane protein complexes under anaerobic and aerobic conditions
Andreas O. Helbig, Marco J. L. de Groot, Renske A. van Gestel, Shabaz Mohammed, Erik A. F. de Hulster, Marijke A. H. Luttik, Pascale Daran-Lapujade, Jack T. Pronk, Albert J. R. Heck, Monique Slijper
PROTEOMICS (2009) 9(20): 4787-4798
Antibody-based screen for ionizing radiation-dependent changes in the Mammalian proteome for use in biodosimetry
Ivey RG, Subramanian O, Lorentzen TD, Paulovich AG.
Radiat Res (2009) 171(5): 549-61
Regulation of stathmin phosphorylation in mouse liver progenitor-29 cells during proteasome inhibition
Enrique Santamaría, Maria I. Mora, Javier Muńoz, Virginia Sánchez-Quiles, Joaquín Fernández-Irigoyen, Jesús Prieto, Fernando J. Corrales
PROTEOMICS (2009) 9(19): 4495-4506
The Mouse C2C12 Myoblast Cell Surface N-Linked Glycoproteome:
IDENTIFICATION, GLYCOSITE OCCUPANCY, AND MEMBRANE ORIENTATION
Mol Cell Proteomics (2009) 8(11): 2555-2569
Top-Down Proteomics Reveals Novel Protein Forms Expressed in Methanosarcina acetivorans
Ferguson JT, Wenger CD, Metcalf WW, Kelleher NL.
J Am Soc Mass Spectrom Early Edition: published 6-Jun-2009
A novel human tectonin protein with multivalent beta-propeller folds interacts with ficolin and binds bacterial LPS
Low DH, Ang Z, Yuan Q, Frecer V, Ho B, Chen J, Ding JL.
PLoS One (2009) 4(7): e6260
Proteome-wide prediction of acetylation substrates
Basu A, Rose KL, Zhang J, Beavis RC, Ueberheide B, Garcia BA, Chait B, Zhao Y, Hunt DF, Segal E, Allis CD, Hake SB.
Proc Natl Acad Sci U S A Early Edition: published 3-Aug-2009
Signal Transduction Cross-talk Mediated by JIP and IRS Scaffold Protein Complexes
Standen CL, Kennedy NJ, Flavell RA, Davis RJ.
Mol Cell Biol Early Edition: published 29-Jun-2009
Quantitative proteomics identifies a Dab2/integrin module regulating cell migration
Teckchandani A, Toida N, Goodchild J, Henderson C, Watts J, Wollscheid B, Cooper JA.
J Cell Biol Early Edition: published 6-Jul-2009
Expression of Rho GDIalpha in rat osteoblasts intermittently exposed to parathyroid hormone in vitro and in vivo
Sun ZF, Jiang H, Ye ZQ, Jia B, Zhang XL, Zhang KQ.
Acta Pharmacol Sin (2009) 30(7): 1001-1007
Estrogen Receptor-{beta} Activation Results in S-Nitrosylation of Proteins Involved in Cardioprotection
Lin J, Steenbergen C, Murphy E, Sun J.
Circulation Early Edition: published 6-Jul-2009
Recombinant Surface Proteomics as a Tool to Analyze Humoral Immune
Responses in Bovines Infected by Mycoplasma mycoides Subsp. mycoides Small
Mol Cell Proteomics (2009) 8(11): 2544-2554
Expression of heat shock protein 60 kDa is upregulated in cervical cancer
Hwang YJ, Lee SP, Kim SY, Choi YH, Kim MJ, Lee CH, Lee JY, Kim DY.
Yonsei Med J (2009) 50(3): 399-406
High expression of HSP47 in ulcerative colitis-associated carcinomas: proteomic approach
Araki K, Mikami T, Yoshida T, Kikuchi M, Sato Y, Oh-Ishi M, Kodera Y, Maeda T, Okayasu I.
Br J Cancer Early Edition: published 14-Jul-2009
A review of current applications of mass spectrometry for neuroproteomics in epilepsy
Liu X, Wen F, Yang J, Chen L, Wei YQ.
Mass Spectrom Rev Early Edition: published 13-Jul-2009
Keratin 17 identified by proteomic analysis may be involved in tumor angiogenesis
Xu Y, Zhang SZ, Huang CH, Liu XY, Zhong ZH, Hou WL, Su ZF, Wei YQ.
BMB Rep (2009) 42(6): 344-9
The future of cancer screening
Collins LG, Wynn DT, Barash JH.
Prim Care (2009) 36(3): 623-39
Identification and Validation of Urinary Biomarkers for Differential
Diagnosis and Evaluation of Therapeutic Intervention in Anti-neutrophil
Mol Cell Proteomics (2009) 8(10): 2296-2307
Applying proteomics to the diagnosis and treatment of ALS and related diseases
Bowser R, Lacomis D.
Muscle Nerve Early Edition: published 7-Aug-2009
Prediction of Muscle-invasive Bladder Cancer Using Urinary Proteomics
Schiffer E, Vlahou A, Petrolekas A, Stravodimos K, Tauber R, Geschwend JE, Neuhaus J, Stolzenburg JU, Conaway MR, Mischak H, Theodorescu D.
Clin Cancer Res Early Edition: published 14-Jul-2009
Proteomic analysis of sera of asymptomatic, early-stage patients with Wilson's disease
Jung-Young Park, Joo Hee Mun, Beom Hee Lee, Sun Hee Heo, Gu-Hwan Kim, Han-Wook Yoo
PROTEOMICS - CLINICAL APPLICATIONS (2009) 3(10): 1185-1190
Aberrant protein expression in plasma and kidney tissue during experimental obstructive nephropathy
Eleni Giannakis, Chrishan S. Samuel, Tim D. Hewitson, Wee-Ming Boon, Mary Macris, Shane Reeve, Josie Lawrence, A. Ian Smith, Geoffrey W. Tregear, John D. Wade
PROTEOMICS - CLINICAL APPLICATIONS (2009) 3(10): 1211-1224
Identification of anti-?-enolase autoantibody as a novel serum marker for endometriosis
Motowo Nabeta, Yasuhito Abe, Lisa Kagawa, Ryuma Haraguchi, Katsumi Kito, Norifumi Ueda, Atsuro Sugita, Motofumi Yokoyama, Yasuki Kusanagi, Masaharu Ito
PROTEOMICS - CLINICAL APPLICATIONS (2009) 3(10): 1201-1210
Mass spectrometry-based serum proteome pattern analysis in molecular diagnostics of early stage breast cancer
Pietrowska M, Marczak L, Polanska J, Behrendt K, Nowicka E, Walaszczyk A, Chmura A, Deja R, Stobiecki M, Polanski A, Tarnawski R, Widlak P.
J Transl Med (2009) 7(1): 60
Resemblance of salivary protein profiles between children with early childhood caries and caries-free controls
Zehetbauer S, Wojahn T, Hiller KA, Schmalz G, Ruhl S.
Eur J Oral Sci (2009) 117(4): 369-73
Comparative Study of GH-Transgenic and Non-Transgenic Amago Salmon (Oncorhynchus masou ishikawae) Allergenicity and Proteomic Analysis of Amago Salmon Allergens
Nakamura R, Satoh R, Nakajima Y, Kawasaki N, Yamaguchi T, Sawada JI, Nagoya H, Teshima R.
Regul Toxicol Pharmacol Early Edition: published 10-Aug-2009
A proof-of-principle gel-free proteomics strategy for the identification of predictive biomarkers for the onset of pre-eclampsia
Blankley R, Gaskell S, Whetton A, Dive C, Baker P, Myers J.
BJOG Early Edition: published 4-Aug-2009
Serum proteomes of hypertension patients with abundant phlegm-dampness
Chu YG, Shi J, Hu YH, Wu HQ, Liu GJ, Hu CJ, Li YZ, Li Y, Chen ZJ, He Q.
Zhong Xi Yi Jie He Xue Bao (2009) 7(7): 629-35
Comparative proteomical and metalloproteomical analyses of human plasma from patients with laryngeal cancer
Gomes CP, Freire MS, Pires BR, Vasconcelos EA, Rocha TL, de Fátima Grossi-de-Sá M, Rezende TM, Mehta A, Pereira RW, Petriz BA, da Cruz AD, Pescara IC, Franco OL.
Cancer Immunol Immunother Early Edition: published 23-Jul-2009
Proteomic identification of an MHC-binding peptidome from pancreas and breast cancer cell lines
Antwi K, Hanavan PD, Myers CE, Ruiz YW, Thompson EJ, Lake DF.
Mol Immunol Early Edition: published 15-Jul-2009
Comparative proteomic analysis of beta-catenin-mediated malignant progression of esophageal squamous cell carcinoma
Ren HZ, Wang JS, Pan GQ, Lv H, Wen JF, Luo GQ, Wang KS, Zhang PF.
Dis Esophagus Early Edition: published 31-Jul-2009
Serum Proteomic Profiles In Subjects with Heavy Alcohol Abuse
Liangpunsakul S, Lai X, Ringham HN, Crabb DW, Witzmann FA.
J Proteomics Bioinform (2009) 2: 236-243.
Comparative Serum Proteome Analysis of Human Lymph Node Negative/Positive Invasive Ductal Carcinoma of the Breast and Benign Breast Disease Controls via Label-Free Semiquantitative Shotgun Technology
Hu X, Zhang Y, Zhang A, Li Y, Zhu Z, Shao Z, Zeng R, Xu LX.
OMICS Early Edition: published 22-Jul-2009
Mitochondrial proteomics in experimental autoimmune uveitis oxidative stress
Saraswathy S, Rao NA.
Invest Ophthalmol Vis Sci Early Edition: published 2-Jul-2009
Quantification of Cardiovascular Biomarkers in Patient Plasma by Targeted
Mass Spectrometry and Stable Isotope Dilution
Mol Cell Proteomics (2009) 8(10): 2339-2349
Helicobacter pylori in a Korean Isolate Expressed Proteins Differentially in Human Gastric Epithelial Cells
Cho SO, Lim JW, Jun JH, Kim KH, Kim H.
Dig Dis Sci Early Edition: published 12-Aug-2009
Carcinoma cell-derived chemokines and their presence in oral fluid
Michiels K, Schutyser E, Conings R, Lenaerts JP, Put W, Nuyts S, Delaere P, Jacobs R, Struyf S, Proost P, Van Damme J.
Eur J Oral Sci (2009) 117(4): 362-8
Proteomics analysis of mitochondrial proteins reveals overexpression of a mitochondrial protein chaperon, prohibitin, in cells expressing hepatitis C virus core protein
Tsutsumi T, Matsuda M, Aizaki H, Moriya K, Miyoshi H, Fujie H, Shintani Y, Yotsuyanagi H, Miyamura T, Suzuki T, Koike K.
Hepatology Early Edition: published 9-Jul-2009
Global proteome analysis of hepatitis B virus expressing human hepatoblastoma cell line HepG2
Huang Q, Wang L, Bai S, Lin W, Chen W, Lin J, Lin X.
J Med Virol (2009) 81(9): 1539-1550
The biomarker enriched proteome of autosomal dominant polycystic kidney disease cyst fluid
Stephen B. Mason, Xianyin Lai, Robert L. Bacallao, Bonnie L. Blazer-Yost, Vincent H. Gattone II, Kevin C. Wang, Frank A. Witzmann
PROTEOMICS - CLINICAL APPLICATIONS (2009) 3(10): 1247-1250
Identification of Vimentin as a Novel Target of HSF4 in Lens Development and Cataract by Proteomic Analysis
Mou L, Xu JY, Li W, Lei X, Wu Y, Xu G, Kong X, Xu GT.
Invest Ophthalmol Vis Sci Early Edition: published 23-Jul-2009
Proteome and system ontology of hemorrhagic shock: exploring early constitutive changes in postshock mesenteric lymph
Peltz ED, Moore EE, Zurawel AA, Jordan JR, Damle SS, Redzic JS, Masuno T, Eun J, Hansen KC, Banerjee A.
Surgery (2009) 146(2): 347-57
Induced sputum: a window to lung pathology
Nicholas B, Djukanović R.
Biochem Soc Trans (2009) 37(Pt 4): 868-72
Quantitative proteomic analysis of the cerebrospinal fluid of patients with multiple sclerosis
Liu S, Bai S, Qin Z, Yang Y, Cui Y, Qin Y.
J Cell Mol Med Early Edition: published 7-Jul-2009
Proteomic study of DBA/2J mice retina: Down-regulation of Integrin ?7 correlated with retinal ganglion cell death
Takashi Kanamoto, Takahiro Ue, Tomoko Yokoyama, Nazariy Souchelnytskyi, Yoshiaki Kiuchi
PROTEOMICS (2009) 9(21): 4962-4969
Inverse relationship between Sec14l3 mRNA/protein expression and allergic airway inflammation
Shan L, Kawakami T, Asano S, Noritake S, Yoshimoto D, Yamashita K, Kikkawa H, Kinoshita M, Matsubara S.
Eur J Pharmacol Early Edition: published 2-Jul-2009
Advances in urinary proteome analysis and biomarker discovery in pediatric renal disease
Caubet C, Lacroix C, Decramer S, Drube J, Ehrich JH, Mischak H, Bascands JL, Schanstra JP.
Pediatr Nephrol Early Edition: published 15-Jul-2009
Alterations of the podocyte proteome in response to high glucose concentrations
Sandra Schordan, Eric Schordan, Nicole Endlich, Maja T. Lindenmeyer, Catherine Meyer-Schwesinger, Tobias N. Meyer, Jürgen Giebel, Clemens D. Cohen, Karlhans Endlich, Martin H. Maurer
PROTEOMICS (2009) 9(19): 4519-4528
Use of combination proteomic analysis to demonstrate molecular similarity of head and neck squamous cell carcinoma arising from different subsites
Weinberger PM, Merkley M, Lee JR, Adam BL, Gourin CG, Podolsky RH, Haffty BG, Papadavid E, Sasaki C, Psyrri A, Dynan WS.
Arch Otolaryngol Head Neck Surg (2009) 135(7): 694-703
Identification of Tumor-associated Autoantigens for the Diagnosis of
Colorectal Cancer in Serum Using High Density Protein Microarrays
Mol Cell Proteomics (2009) 8(10): 2382-2395
Altered proteolytic events in experimental autoimmune encephalomyelitis discovered by iTRAQ shotgun proteomics analysis of spinal cord
Jain MR, Bian S, Liu T, Hu J, Elkabes S, Li H.
Proteome Science (2009) 7(1): 25
Comprehensive seroprofiling of sixteen B. burgdorferi OspC: Implications for Lyme disease diagnostics design
Ivanova L, Christova I, Neves V, Aroso M, Meirelles L, Brisson D, Gomes-Solecki M.
Clin Immunol Early Edition: published 1-Jul-2009
Complicated urinary tract infection is associated with uroepithelial expression of S100A8
Reyes L, Alvarez S, Allam A, Reinhard M, Brown MB.
Infect Immun Early Edition: published 10-Aug-2009
Antibody-based proteomics for esophageal cancer: Identification of proteins in the nuclear factor-kappaB pathway and mitotic checkpoint
Uemura N, Nakanishi Y, Kato H, Nagino M, Hirohashi S, Kondo T.
Cancer Sci Early Edition: published 28-May-2009
Proteomics analysis in 28 patients with systemic IgG4-related plasmacytic syndrome
Yamamoto M, Naishiro Y, Suzuki C, Kokai Y, Suzuki R, Honda S, Abe T, Takahashi H, Shinomura Y.
Rheumatol Int Early Edition: published 17-Jul-2009
Proteomic identification of aldo-keto reductase AKR1B10 induction after treatment of colorectal cancer cells with the proteasome inhibitor bortezomib
Loeffler-Ragg J, Mueller D, Gamerith G, Auer T, Skvortsov S, Sarg B, Skvortsova I, Schmitz KJ, Martin HJ, Krugmann J, Alakus H, Maser E, Menzel J, Hilbe W, Lindner H, Schmid KW, Zwierzina H.
Mol Cancer Ther Early Edition: published 30-Jun-2009
Potential new urinary markers in the early detection of bladder cancer
Shirodkar SP, Lokeshwar VB.
Curr Opin Urol Early Edition: published 3-Jul-2009
Bronchoalveolar lavage fluid proteomic patterns of sulfur mustard-exposed patients
Hossein Mehrani, Mostafa Ghanei, Jafar Aslani, Leila Golmanesh
PROTEOMICS - CLINICAL APPLICATIONS (2009) 3(10): 1191-1200
Candidate biomarkers of chronic inflammatory demyelinating polyneuropathy (CIDP): Proteome analysis of cerebrospinal fluid
Tumani H, Pfeifle M, Lehmensiek V, Rau D, Mogel H, Ludolph AC, Brettschneider J.
J Neuroimmunol Early Edition: published 7-Jul-2009
Molecular-assisted immunohistochemical optimization
Mohd Omar MF, Huang N, Ou K, Yu K, Putti TC, Jikuya H, Ichikawa T, Nishimura O, Tan P, Salto-Tellez M.
Acta Histochem Early Edition: published 21-Jul-2009
Modulated T-complex protein 1 ? and peptidyl-prolyl cis-trans isomerase B are two novel indicators for evaluating lymph node metastasis in colorectal cancer: Evidence from proteomics and bioinformatics
Fei Yue, Li-Shun Wang, Li Xia, Xiao-Ling Wang, Bo Feng, Ai-Guo Lu, Guo-Qiang Chen, Min-Hua Zheng
PROTEOMICS - CLINICAL APPLICATIONS (2009) 3(10): 1225-1235
Biomarkers of lung-related diseases: Current knowledge by proteomic approaches
Lau AT, Chiu JF.
J Cell Physiol Early Edition: published 13-Aug-2009
Proteomic analysis reveals novel binding partners of dysbindin, a schizophrenia-related protein
Hikita T, Taya S, Fujino Y, Taneichi-Kuroda S, Ohta K, Tsuboi D, Shinoda T, Kuroda K, Funahashi Y, Uraguchi-Asaki J, Hashimoto R, Kaibuchi K.
J Neurochem Early Edition: published 1-Jul-2009
Isobaric labeling and tandem mass spectrometry: A novel approach for profiling and quantifying proteins differentially expressed in amniotic fluid in preterm labor with and without intra-amniotic infection/inflammation
Romero R, Kusanovic JP, Gotsch F, Erez O, Vaisbuch E, Mazaki-Tovi S, Moser A, Tam S, Leszyk J, Master SR, Juhasz P, Pacora P, Ogge G, Gomez R, Yoon BH, Yeo L, Hassan SS, Rogers WT.
J Matern Fetal Neonatal Med Early Edition: published 6-Aug-2009
Increase in serum haptoglobin and apolipoprotein M in patients with obstructive sleep apnoea
Kim J, Lee S, In K, Kim J, You S, Kang K, Sim J, Lee S, Yoon D, Lee J, Shin C.
J Sleep Res Early Edition: published 30-Jun-2009
Antenatal glucocorticoid therapy increase cardiac alpha-enolase levels in fetus and neonate rats
Tsuzuki Y, Takeba Y, Kumai T, Matsumoto N, Mizuno M, Murano K, Asoh K, Takagi M, Yamamoto H, Kobayashi S.
Life Sci Early Edition: published 4-Jul-2009
Proteomics Characterization of Cell Membrane Blebs in Human Retinal Pigment
Epithelium Cells
Mol Cell Proteomics (2009) 8(10): 2201-2211
Lack of A-factor Production Induces the Expression of Nutrient Scavenging
and Stress-related Proteins in Streptomyces griseus
Mol Cell Proteomics (2009) 8(10): 2396-2403
ERp46 is reduced by high glucose and regulates insulin content in pancreatic beta cells
Alberti AA, Karamessinis P, Peroulis M, Kypreou K, Kavvadas P, Pagakis S, Politis P, Charonis A.
Am J Physiol Endocrinol Metab Early Edition: published 21-Jul-2009
Proteomics at the center of nutrigenomics: Comprehensive molecular understanding of dietary health effects
Kussmann M, Affolter M.
Nutrition Early Edition: published 7-Aug-2009
Identification of a New Panel of Serum Autoantibodies Associated with the Presence of In situ Carcinoma of the Breast in Younger Women
Desmetz C, Bascoul-Mollevi C, Rochaix P, Lamy PJ, Kramar A, Rouanet P, Maudelonde T, Mangé A, Solassol J.
Clin Cancer Res Early Edition: published 7-Jul-2009
Shotgun proteome profile of Populus developing xylem
Udaya C. Kalluri, Gregory B. Hurst, Patricia K. Lankford, Priya Ranjan, Dale A. Pelletier
PROTEOMICS (2009) 9(21): 4871-4880
Comparative analyses of the proteomes of leaves and flowers at various stages of development reveal organ-specific functional differentiation of proteins in soybean
Nagib Ahsan, Setsuko Komatsu
PROTEOMICS (2009) 9(21): 4889-4907
Mixed volume sample preparation method for intact cell mass spectrometry of Fusarium spores
Jasmin Kemptner, Martina Marchetti-Deschmann, Christian P. Kubicek, Günter Allmaier
Journal of Mass Spectrometry (2009) 44(11): 1622-1624
Dynamics of protein expression during pollen germination in canola (Brassica napus)
Sheoran IS, Pedersen EJ, Ross AR, Sawhney VK.
Planta Early Edition: published 23-Jul-2009
Proteomic analysis of Arabidopsis halleri shoots in response to the heavy metals cadmium and zinc and rhizosphere microorganisms
Silvia Farinati, Giovanni DalCorso, Elisa Bona, Michela Corbella, Silvia Lampis, Daniela Cecconi, Rita Polati, Graziella Berta, Giovanni Vallini, Antonella Furini
PROTEOMICS (2009) 9(21): 4837-4850
Proteome analysis of tobacco leaves under salt stress
Razavizadeh R, Ehsanpour AA, Ahsan N, Komatsu S.
Peptides Early Edition: published 29-Jun-2009
Differential expression proteomics to investigate responses and resistance to Orobanche crenata in Medicago truncatula
Castillejo MA, Maldonado AM, Dumas-Gaudot E, Fernandez-Aparicio M, Susin R, Rubiales D, Jorrin JV.
BMC Genomics (2009) 10(1): 294
Yeast proteome map (last update)
Michel Perrot, Suzette Moes, Aurélie Massoni, Paul Jenoe, Hélian Boucherie
PROTEOMICS (2009) 9(20): 4669-4673
Proteomic analysis of chromate-induced modifications in Pseudokirchneriella subcapitata
Vannini C, Marsoni M, Domingo G, Antognoni F, Biondi S, Bracale M.
Chemosphere Early Edition: published 3-Jul-2009
Identification of Rat Prostatic Secreted Proteins using Mass Spectrometric Analysis and Androgen-Dependent mRNA Expression
Fujimoto N, Suzuki T, Ohta S, Kitamura S.
J Androl Early Edition: published 3-Jul-2009
Proteomic characterization of copper stress response in Elsholtzia splendens roots and leaves
Li F, Shi J, Shen C, Chen G, Hu S, Chen Y.
Plant Mol Biol Early Edition: published 24-Jul-2009
Proteomics Analysis of Lactobacillus casei Zhang, a New Probiotic Bacterium
Isolated from Traditional Home-made Koumiss in Inner Mongolia of China
Mol Cell Proteomics (2009) 8(10): 2321-2338
Proteomic investigation of the impact of oxygen on the protein profiles of hyaluronic acid-producing Streptococcus zooepidemicus
Ting-Feng Wu, Wei-Chih Huang, Yi-Chun Chen, Yeou-Guang Tsay, Chun-Sheng Chang
PROTEOMICS (2009) 9(19): 4507-4518
Proteomic analysis of endodontic infections by liquid chromatography-tandem mass spectrometry
Nandakumar R, Madayiputhiya N, Fouad AF.
Oral Microbiol Immunol (2009) 24(4): 347-352
Analysis of predicted CD8(+) T cell epitopes from proteins encoded by the specific RD regions of Mycobacterium tuberculosis for vaccine development and specific diagnosis
Wang J, Zhang H, Wang H.
Mol Biol Rep Early Edition: published 17-Jul-2009
The origin of Listeria monocytogenes 4b isolates is signified by subproteomic profiling
Dumas E, Meunier B, Berdagué JL, Chambon C, Desvaux M, Hébraud M.
Biochim Biophys Acta Early Edition: published 10-Jul-2009
Definition of purified enzyme-linked immunosorbent assay antigens from the culture filtrate protein of Mycobacterium bovis by proteomic analysis
Cho YS, Lee SE, Ko YJ, Cho D, Lee HS, Hwang I, Nam H, Heo E, Kim JM, Jung S.
J Immunoassay Immunochem (2009) 30(3): 291-304
PPE and PE_PGRS proteins of Mycobacterium marinum are transported via the type VII secretion system ESX-5
Abdallah AM, Verboom T, Weerdenburg EM, van Pittius NC, Mahasha PW, Jiménez C, Parra M, Cadieux N, Brennan MJ, Appelmelk BJ, Bitter W.
Mol Microbiol Early Edition: published 7-Jul-2009
Analysis of the Pseudomonas putida CA-3 proteome during growth on styrene under nitrogen limiting and non limiting conditions
Nikodinovic-Runic J, Flanagan M, Hume AR, Cagney G, O'Connor KE.
Microbiology Early Edition: published 16-Jul-2009
Proteins involved in difference of sorbitol fermentation rates of the toxigenic and nontoxigenic Vibrio cholerae El Tor strains revealed by comparative proteome analysis
Wang R, Zhang H, Qiu H, Gao S, Kan B.
BMC Microbiol (2009) 9(1): 135
Differential proteomic analysis of Clostridium perfringens ATCC13124; identification of dominant, surface and structure associated proteins
Alam SI, Bansod S, Kumar RB, Sengupta N, Singh L.
BMC Microbiol (2009) 9(1): 162
Identification of new epidemiological molecular markers by comparative proteomics of serogroup A meningococcal isolates from three pandemic waves
Giulia Bernardini, Maurizio Comanducci, Stefania Bambini, Giovanni Renzone, Andrea Scaloni, Giovanna Morelli, Mark Achtman, Giulio Ratti, Annalisa Santucci
PROTEOMICS - CLINICAL APPLICATIONS (2009) 3(10): 1251-1254
Proteolysis during long-term glucose starvation in Staphylococcus aureus COL
Stephan Michalik, Manuel Liebeke, Daniela Zühlke, Michael Lalk, Jörg Bernhardt, Ulf Gerth, Michael Hecker
PROTEOMICS (2009) 9(19): 4468-4477
Fatty acid profiling and proteomic analysis of Salmonella enterica serotype Typhimurium inactivated with supercritical carbon dioxide
Kim SR, Kim HT, Park HJ, Kim S, Choi HJ, Hwang GS, Yi JH, Ryu DH, Kim KH.
Int J Food Microbiol Early Edition: published 24-Jun-2009
Optimization of 2D-PAGE protocols for proteomic analysis of two nonaxenic toxin-producing freshwater cyanobacteria: Cylindrospermopsis raciborskii and Raphidiopsis sp
Plominsky AM, Soto-Liebe K, Vásquez M.
Lett Appl Microbiol Early Edition: published 26-May-2009
Proteome Analysis of Leptospira interrogans Virulent Strain
Vieira ML, Pimenta DC, de Morais ZM, Vasconcellos SA, Nascimento AL.
Open Microbiol J (2009) 3: 69-74.
Proteomic analysis of wild type and arsenite resistant Leishmania donovani
Sharma S, Singh G, Chavan HD, Dey CS.
Exp Parasitol Early Edition: published 10-Aug-2009
Comparative proteome analysis of TGF-?1-induced fibrosis processes in normal rat kidney interstitial fibroblast cells in response to ascofuranone
Jeong-Han Kang, Hyun-Ji Cho, In-Seon Lee, Moonkyu Kim, In-Kyu Lee, Young-Chae Chang
PROTEOMICS (2009) 9(19): 4445-4456
Changes in the protein expression profiles of the Hepa-T1 cell line when exposed to Cu(2+)
Chen DS, Chan KM.
Aquat Toxicol Early Edition: published 30-Jun-2009
Expression of Rho GDIalpha in rat osteoblasts intermittently exposed to parathyroid hormone in vitro and in vivo
Sun ZF, Jiang H, Ye ZQ, Jia B, Zhang XL, Zhang KQ.
Acta Pharmacol Sin (2009) 30(7): 1001-1007
Characterization of cluster-assembled nanostructured titanium oxide coating as substrate for protein arrays
Carbone R, De Marni M, Zanardi A, Vinati S, Barborini E, Fornasari L, Milani P.
Anal Biochem Early Edition: published 6-Jul-2009
Protein-binding microarrays: probing disease markers at the interface of proteomics and genomics
Kerschgens J, Egener-Kuhn T, Mermod N.
Trends Mol Med Early Edition: published 6-Aug-2009
Identification of Tumor-associated Autoantigens for the Diagnosis of
Colorectal Cancer in Serum Using High Density Protein Microarrays
Mol Cell Proteomics (2009) 8(10): 2382-2395
The protein scaffold NHERF-1 controls the amplitude and duration of localized protein kinase D activity
Kunkel MT, Garcia EL, Kajimoto T, Hall RA, Newton AC.
J Biol Chem Early Edition: published 6-Jul-2009
Analysis of saccharides possessing post-translational protein modifications by phenylhydrazine labeling using high-performance liquid chromatography
Suzuki H, Kato E, Matsuzaki A, Ishikawa M, Harada Y, Tanikawa K, Nakagawa H.
Anal Sci (2009) 25(8): 1039-42
Identification of Heparin-binding Sites in Proteins by Selective Labeling
Alessandro Ori, Paul Free, Jose Courty, Mark C. Wilkinson, and David G.
Mol Cell Proteomics (2009) 8(10): 2256-2265
Affinity Enrichment and Characterization of Mucin Core-1 Type Glycopeptides
from Bovine Serum
Mol Cell Proteomics (2009) 8(11): 2515-2526
The Mouse C2C12 Myoblast Cell Surface N-Linked Glycoproteome:
IDENTIFICATION, GLYCOSITE OCCUPANCY, AND MEMBRANE ORIENTATION
Mol Cell Proteomics (2009) 8(11): 2555-2569
Mass spectrometric analysis of the glycosphingolipid-derived glycans from miniature pig endothelial cells and islets: identification of NeuGc epitope in pig islets
Yun-Gon Kim, David J. Harvey, Yung-Hun Yang, Chung-Gyu Park, Byung-Gee Kim
Journal of Mass Spectrometry (2009) 44(10): 1489-1499
High Throughput Characterization of Combinatorial Histone Codes
Nicolas L. Young, Peter A. DiMaggio, Mariana D. Plazas-Mayorca, Richard C.
Mol Cell Proteomics (2009) 8(10): 2266-2284
Unraveling the human embryonic stem cell phosphoproteome
Hutchins AP, Robson P.
Cell Stem Cell (2009) 5(2): 126-8
Proteome-wide prediction of acetylation substrates
Basu A, Rose KL, Zhang J, Beavis RC, Ueberheide B, Garcia BA, Chait B, Zhao Y, Hunt DF, Segal E, Allis CD, Hake SB.
Proc Natl Acad Sci U S A Early Edition: published 3-Aug-2009
Toward an in situ phospho-protein atlas: phospho- and site-specific antibody-based spatio-temporally systematized detection of phosphorylated proteins in vivo
Teraishi T, Miura K.
Bioessays Early Edition: published 1-Jul-2009
Transition metals as electron traps. II. Structures, energetics and electron transfer dissociations of ternary Co, Ni and Zn-peptide complexes in the gas phase
Franti?ek Ture?ek, Anne I. S. Holm, Subhasis Panja, Steen Brřnsted Nielsen, Preben Hvelplund
Journal of Mass Spectrometry (2009) 44(10): 1518-1531
A Mixed Integer Linear Optimization Framework for the Identification and
Quantification of Targeted Post-translational Modifications of Highly
Mol Cell Proteomics (2009) 8(11): 2527-2543
Effect of urea surface modification and photocatalytic cleaning on surface-assisted laser desorption ionization mass spectrometry with amorphous TiO2 nanoparticles
Takehiro Watanabe, Koji Okumura, Hideya Kawasaki, Ryuichi Arakawa
Journal of Mass Spectrometry (2009) 44(10): 1443-1451
A New Approach for Quantitative Phosphoproteomic Dissection of Signaling
Pathways Applied to T Cell Receptor Activation
Mol Cell Proteomics (2009) 8(11): 2418-2431
Phosphorylation dynamics during early differentiation of human embryonic stem cells
Van Hoof D, Muñoz J, Braam SR, Pinkse MW, Linding R, Heck AJ, Mummery CL, Krijgsveld J.
Cell Stem Cell (2009) 5(2): 214-26
Lysine Acetylation Targets Protein Complexes and Co-Regulates Major Cellular Functions
Choudhary C, Kumar C, Gnad F, Nielsen ML, Rehman M, Walther T, Olsen JV, Mann M.
Science Early Edition: published 16-Jul-2009
Heterochromatin Protein 1 Is Extensively Decorated with Histone Code-like
Post-translational Modifications
Mol Cell Proteomics (2009) 8(11): 2432-2442
HER2 carboxy terminal fragments regulate cell migration and cortactin phosphorylation
Garcia-Castillo J, Pedersen K, Angelini PD, Bech-Serra JJ, Colome N, Cunningham MP, Parra Palau JL, Canals F, Baselga J, Arribas J.
J Biol Chem Early Edition: published 8-Jul-2009
High-accuracy identification and bioinformatic analysis of in vivo protein phosphorylation sites in yeast
Florian Gnad, Lyris M. F. de Godoy, Jürgen Cox, Nadin Neuhauser, Shubin Ren, Jesper V. Olsen, Matthias Mann
PROTEOMICS (2009) 9(20): 4642-4652
Modification-specific proteomics: Strategies for characterization of post-translational modifications using enrichment techniques
Yingming Zhao, Ole N. Jensen
PROTEOMICS (2009) 9(20): 4632-4641
De novo peptide sequencing by tandem MS using complementary CID and electron transfer dissociation
Andreas Bertsch, Andreas Leinenbach, Anton Pervukhin, Markus Lubeck, Ralf Hartmer, Carsten Baessmann, Yasser Abbas Elnakady, Rolf Müller, Sebastian Böcker, Christian G. Huber, Oliver Kohlbacher
ELECTROPHORESIS (2009) 30(21): 3736-3747
The phosphoproteomics data explosion
Lemeer S, Heck AJ.
Curr Opin Chem Biol Early Edition: published 18-Jul-2009
Influence of basic residues on dissociation kinetics and dynamics of singly protonated peptides: time-resolved photodissociation study
So Hee Yoon, Jeong Hee Moon, Yeon Ji Chung, Myung Soo Kim
Journal of Mass Spectrometry (2009) 44(10): 1532-1537
A mechanistic study on the fragmentation of peptide-derived Amadori products
Piotr Stefanowicz, Katarzyna Kapczynska, Mariusz Jaremko, ?ukasz Jaremko, Zbigniew Szewczuk
Journal of Mass Spectrometry (2009) 44(10): 1500-1508
Proteomic analysis of murine Piwi proteins reveals a role for arginine methylation in specifying interaction with Tudor family members
Vagin VV, Wohlschlegel J, Qu J, Jonsson Z, Huang X, Chuma S, Girard A, Sachidanandam R, Hannon GJ, Aravin AA.
Genes Dev Early Edition: published 7-Jul-2009
Profiling protein interaction networks with functional protein microarrays
Mattoon DR, Schweitzer B.
Methods Mol Biol (2009) 563: 63-74
Proteomic, functional and motif-based analysis of C-terminal Src kinase-interacting proteins
Guang Yang, Qingrun Li, Siyuan Ren, Xuefeng Lu, Longhou Fang, Wenchao Zhou, Fan Zhang, Feilai Xu, Zhe Zhang, Rong Zeng, Friedrich Lottspeich, Zhengjun Chen
PROTEOMICS (2009) 9(21): 4944-4961
Proteomic and biochemical analyses unveil tight interaction of ataxin-3 with tubulin
Mazzucchelli S, De Palma A, Riva M, D'Urzo A, Pozzi C, Pastori V, Comelli F, Fusi P, Vanoni M, Tortora P, Mauri P, Regonesi ME.
Int J Biochem Cell Biol Early Edition: published 7-Aug-2009
Identification of Heparin-binding Sites in Proteins by Selective Labeling
Alessandro Ori, Paul Free, Jose Courty, Mark C. Wilkinson, and David G.
Mol Cell Proteomics (2009) 8(10): 2256-2265
Analysis of Candida albicans plasma membrane proteome
Virginia Cabezón, Arancha Llama-Palacios, César Nombela, Lucía Monteoliva, Concha Gil
PROTEOMICS (2009) 9(20): 4770-4786
Modified electrophoretic and digestion conditions allow a simplified mass spectrometric evaluation of disulfide bonds
Petr Pompach, Petr Man, Daniel Kavan, Kate?ina Hofbauerová, Vinay Kumar, Karel Bezou?ka, Vladimír Havlí?ek, Petr Novák
Journal of Mass Spectrometry (2009) 44(11): 1571-1578
Interaction networks: Lessons from large-scale studies in yeast
Gerard Cagney
PROTEOMICS (2009) 9(20): 4799-4811
Defining the Human Deubiquitinating Enzyme Interaction Landscape
Sowa ME, Bennett EJ, Gygi SP, Harper JW.
Cell Early Edition: published 15-Jul-2009
Analysis of interaction partners of H4 histone by a new proteomics approach
Evelyne Saade, Undine Mechold, Arman Kulyyassov, Damien Vertut, Marc Lipinski, Vasily Ogryzko
PROTEOMICS (2009) 9(21): 4934-4943
Signal Transduction Cross-talk Mediated by JIP and IRS Scaffold Protein Complexes
Standen CL, Kennedy NJ, Flavell RA, Davis RJ.
Mol Cell Biol Early Edition: published 29-Jun-2009