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SPS' DigestIssue 66, 9-Mar-2010 |
Helicobacter pylori proteomics by 2-DE/MS, 1-DE-LC/MS and functional data mining
Peter R. Jungblut, Franziska Schiele, Ursula Zimny-Arndt, Renate Ackermann, Monika Schmid, Sabine Lange, Robert Stein, Klaus-Peter Pleissner
PROTEOMICS (2010) 10(2): 182-193
Globally, unrelated protein sequences appear random
Daniel T. Lavelle and William R. Pearson
Bioinformatics (2010) 26(3): 310-318
Finding Chimeras: a Bioinformatics Strategy for Identification of
Cross-linked Peptides
Mol Cell Proteomics (2010) 9(1): 25-31
Bioinformatics as a tool for assessing the quality of sub-cellular proteomic strategies and inferring functions of proteins: plant cell wall proteomics as a test case
Clemente HS, Pont-Lezica R, Jamet E.
Bioinform Biol Insights (2009) 3: 15-28.
DCDB: Drug combination database
Yanbin Liu, Bin Hu, Chengxin Fu, and Xin Chen
Bioinformatics (2010) 26(4): 587-588
PerturbationAnalyzer: a tool for investigating the effects of concentration perturbation on protein interaction networks
Fei Li, Peng Li, Wenjian Xu, Yuxing Peng, Xiaochen Bo, and Shengqi Wang
Bioinformatics (2010) 26(2): 275-277
The effect of interfering ions on search algorithm performance for electron-transfer dissociation data
David M. Good, Craig D. Wenger, Joshua J. Coon
PROTEOMICS (2010) 10(1): 164-167
Computational protein profile similarity screening for quantitative mass spectrometry experiments
Marc Kirchner, Bernhard Y. Renard, Ullrich Kothe, Darryl J. Pappin, Fred A. Hamprecht, Hanno Steen, and Judith A. J. Steen
Bioinformatics (2010) 26(1): 77-83
Efficient peak-labeling algorithms for whole-sample mass spectrometry proteomics
Pelikan R, Hauskrecht M.
IEEE/ACM Trans Comput Biol Bioinform (2010) 7(1): 126-37
Over-optimism in bioinformatics research
Anne-Laure Boulesteix
Bioinformatics (2010) 26(3): 437-439
Protein complex prediction based on simultaneous protein interaction network
Suk Hoon Jung, Bora Hyun, Woo-Hyuk Jang, Hee-Young Hur, and Dong-Soo Han
Bioinformatics (2010) 26(3): 385-391
FragmentationAnalyzer: An open-source tool to analyze MS/MS fragmentation data
Harald Barsnes, Ingvar Eidhammer, Lennart Martens
PROTEOMICS (2010) 10(5): 1087-1090
Kinase selectivity potential for inhibitors targeting the ATP binding site: a network analysis
Danzhi Huang, Ting Zhou, Karine Lafleur, Cristina Nevado, and Amedeo Caflisch
Bioinformatics (2010) 26(2): 198-204
ICPLQuant - A software for non-isobaric isotopic labeling proteomics
Achim Brunner, Eva-Maria Keidel, Dominik Dosch, Josef Kellermann, Friedrich Lottspeich
PROTEOMICS (2010) 10(2): 315-326
ESIprot: a universal tool for charge state determination and molecular weight calculation of proteins from electrospray ionization mass spectrometry data
Robert Winkler
Rapid Communications in Mass Spectrometry (2010) 24(3): 285-294
MAZIE: A Mass and Charge Inference Engine to Enhance Database Searching of Tandem Mass Spectra
Victor KG, Murgai M, Lyons CE, Templeton TA, Moshnikov SA, Templeton DJ.
J Am Soc Mass Spectrom Early Edition: published 17-Sep-2009
A Community Standard Format for the Representation of Protein Affinity
Reagents
Mol Cell Proteomics (2010) 9(1): 1-10
IDEAL-Q, an Automated Tool for Label-free Quantitation Analysis Using an
Efficient Peptide Alignment Approach and Spectral Data Validation
Mol Cell Proteomics (2010) 9(1): 131-144
Speeding up tandem mass spectrometry based database searching by peptide and spectrum indexing
You Li, Hao Chi, Le-Heng Wang, Hai-Peng Wang, Yan Fu, Zuo-Fei Yuan, Su-Jun Li, Yan-Sheng Liu, Rui-Xiang Sun, Rong Zeng, Si-Min He
Rapid Communications in Mass Spectrometry (2010) 24(6): 807-814
ProPhylER: A Curated Online Resource for Protein Function and Structure Based on Evolutionary Constraint Analyses
Binkley J, Karra K, Kirby A, Hosobuchi M, Stone EA, Sidow A.
Genome Res (2010) 20(1): 142-54
hPDI: a database of experimental human protein-DNA interactions
Zhi Xie, Shaohui Hu, Seth Blackshaw, Heng Zhu, and Jiang Qian
Bioinformatics (2010) 26(2): 287-289
Optimization of minimum set of protein-DNA interactions: a quasi exact solution with minimum over-fitting
N. A. Temiz, A. Trapp, O. A. Prokopyev, and C. J. Camacho
Bioinformatics (2010) 26(3): 319-325
A ubiquitin and ubiquitin-like protein spectral library
Tharan Srikumar, Stanley M. Jeram, Henry Lam, Brian Raught
PROTEOMICS (2010) 10(2): 337-342
Sorting protein lists with nwCompare: A simple and fast algorithm for n-way comparison of proteomic data files
Frédéric Pont, Jean Jacques Fournié
PROTEOMICS (2010) 10(5): 1091-1094
Empirical approach to false discovery rate estimation in shotgun proteomics
Anton A. Goloborodko, Corina Mayerhofer, Alexander R. Zubarev, Irina A. Tarasova, Alexander V. Gorshkov, Roman A. Zubarev, Mikhail V. Gorshkov
Rapid Communications in Mass Spectrometry (2010) 24(4): 454-462
Rapid model quality assessment for protein structure predictions using the comparison of multiple models without structural alignments
Liam J. McGuffin and Daniel B. Roche
Bioinformatics (2010) 26(2): 182-188
MSQ: a tool for quantification of proteomics data generated by a liquid chromatography/matrix-assisted laser desorption/ionization time-of-flight tandem mass spectrometry based targeted quantitative proteomics platform
Jung Hun Oh, Sheng Pan, Jing Zhang, Jean Gao
Rapid Communications in Mass Spectrometry (2010) 24(4): 403-408
DtaRefinery, a Software Tool for Elimination of Systematic Errors from
Parent Ion Mass Measurements in Tandem Mass Spectra Data Sets
Mol Cell Proteomics (2010) 9(3): 486-496
A computational platform for MALDI-TOF mass spectrometry data: Application to serum and plasma samples
Dante Mantini, Francesca Petrucci, Damiana Pieragostino, Piero Del Boccio, Paolo Sacchetta, Giovanni Candiano, Gian Marco Ghiggeri, Alessandra Lugaresi, Giorgio Federici, Carmine Di Ilio, Andrea Urbani
Journal of Proteomics (2010) 73(3): 562-570
MSMSpdbb: providing protein databases of closely related organisms to improve proteomic characterization of prokaryotic microbes
Gustavo A. de Souza, Magnus O. Arntzen, and Harald G. Wiker
Bioinformatics (2010) 26(5): 698-699
Identification of substrates for Ser/Thr kinases using residue-based statistical pair potentials
Narendra Kumar and Debasisa Mohanty
Bioinformatics (2010) 26(2): 189-197
Robust biomarker identification for cancer diagnosis with ensemble feature selection methods
Thomas Abeel, Thibault Helleputte, Yves Van de Peer, Pierre Dupont, and Yvan Saeys
Bioinformatics (2010) 26(3): 392-398
A rapid ultra-performance liquid chromatography/tandem mass spectrometric methodology for the in vitro analysis of Pooled and Cocktail cytochrome P450 assays
Peter G. Alden, Robert S. Plumb, Michael D. Jones, Paul D. Rainville, Darcy Shave
Rapid Communications in Mass Spectrometry (2010) 24(1): 147-154
SimBoolNet--a Cytoscape plugin for dynamic simulation of signaling networks
Jie Zheng, David Zhang, Pawel F. Przytycki, Rafal Zielinski, Jacek Capala, and Teresa M. Przytycka
Bioinformatics (2010) 26(1): 141-142
Classification of Myoviridae bacteriophages using protein sequence similarity
Lavigne R, Darius P, Summer EJ, Seto D, Mahadevan P, Nilsson AS, Ackermann HW, Kropinski AM.
BMC Microbiol (2009) 9(1): 224
Fungal Secretome Database: Integrated platform for annotation of fungal secretomes
Choi J, Park J, Kim D, Jung K, Kang S, Lee YH.
BMC Genomics (2010) 11(1): 105
LegumeTFDB: an integrative database of Glycine max, Lotus japonicus and Medicago truncatula transcription factors
Keiichi Mochida, Takuhiro Yoshida, Tetsuya Sakurai, Kazuko Yamaguchi-Shinozaki, Kazuo Shinozaki, and Lam-Son Phan Tran
Bioinformatics (2010) 26(2): 290-291
pISTil: a pipeline for yeast two-hybrid Interaction Sequence Tags identification and analysis
Pellet J, Meyniel L, Vidalain PO, de Chassey B, Tafforeau L, Lotteau V, Rabourdin-Combe C, Navratil V.
BMC Res Notes (2009) 2(1): 220
Annotation and merging of SBML models with semanticSBML
Falko Krause, Jannis Uhlendorf, Timo Lubitz, Marvin Schulz, Edda Klipp, and Wolfram Liebermeister
Bioinformatics (2010) 26(3): 421-422
CYSTM, a novel cysteine-rich transmembrane module with a role in stress tolerance across eukaryotes
Thiago M. Venancio and L. Aravind
Bioinformatics (2010) 26(2): 149-152
Unrestricted identification of modified proteins using MS/MS
Erik Ahrné, Markus Müller, Frederique Lisacek
PROTEOMICS (2010) 10(4): 671-686
Regulation of insulin action by an extract of Artemisia dracunculus L. in primary human skeletal muscle culture: A proteomics approach
Kheterpal I, Coleman L, Ku G, Wang ZQ, Ribnicky D, Cefalu WT.
Phytother Res Early Edition: published 19-Feb-2010
Red Blood Cell (RBC) membrane proteomics - Part II: Comparative proteomics and RBC patho-physiology
Erica M. Pasini, Hans U. Lutz, Matthias Mann, Alan W. Thomas
Journal of Proteomics (2010) 73(3): 421-435
Proteomic study to identify factors in follicular fluid and/or serum involved in in vitro cumulus expansion of porcine oocytes
Bijttebier J, Tilleman K, Deforce D, Dhaenens M, Van Soom A, Maes D.
Soc Reprod Fertil Suppl (2009) 66: 205-6
Functional proteomics reveal the effect of Salvia miltiorrhiza aqueous extract against vascular atherosclerotic lesions
Hung YC, Wang PW, Pan TL.
Biochim Biophys Acta Early Edition: published 16-Feb-2010
Pre-analytical operating procedures for serum Low Molecular Weight protein profiling
Francesco Di Girolamo, Jhessica Alessandroni, Paolo Somma, Fiorella Guadagni
Journal of Proteomics (2010) 73(3): 667-677
Proteomic analysis for testis of rats chronically exposed to perfluorododecanoic acid
Shi Z, Zhang H, Ding L, Feng Y, Wang J, Dai J.
Toxicol Lett (2010) 192(2): 179-88
The phosphoproteome of Fusarium graminearum at the onset of nitrogen starvation
Christof Rampitsch, Rajagopal Subramaniam, Slavica Djuric-Ciganovic, Natalia V. Bykova
PROTEOMICS (2010) 10(1): 124-140
Global analysis of the mitochondrial N-proteome identifies a processing peptidase critical for protein stability
Vögtle FN, Wortelkamp S, Zahedi RP, Becker D, Leidhold C, Gevaert K, Kellermann J, Voos W, Sickmann A, Pfanner N, Meisinger C.
Cell (2009) 139(2): 428-39
Comparative analysis of the secretory proteome of human adipose stromal vascular fraction cells during adipogenesis
Jaeyoon Kim, Yoon Sup Choi, Seyoung Lim, Kyungmoo Yea, Jong Hyuk Yoon, Dong-Jae Jun, Sang Hoon Ha, Jung-Wook Kim, Jae Ho Kim, Pann-Ghill Suh, Sung Ho Ryu, Taehoon G. Lee
PROTEOMICS (2010) 10(3): 394-405
Proteomics Analysis of A33 Immunoaffinity-purified Exosomes Released from
the Human Colon Tumor Cell Line LIM1215 Reveals a Tissue-specific Protein
Mol Cell Proteomics (2010) 9(2): 197-208
Proteomic analysis of the phytopathogenic soilborne fungus Verticillium dahliae reveals differential protein expression in isolates that differ in aggressiveness
Ahmed F. El-Bebany, Christof Rampitsch, Fouad Daayf
PROTEOMICS (2010) 10(2): 289-303
Proteomic and phospho-proteomic profile of human platelets in basal, resting state: insights into integrin signaling
Qureshi AH, Chaoji V, Maiguel D, Faridi MH, Barth CJ, Salem SM, Singhal M, Stoub D, Krastins B, Ogihara M, Zaki MJ, Gupta V.
PLoS One (2009) 4(10): e7627
Proteomics in extracorporeal blood purification and peritoneal dialysis
Visith Thongboonkerd
Journal of Proteomics (2010) 73(3): 521-526
CKS Proteins Protect Mitochondrial Genome Integrity by Interacting with
Mitochondrial Single-stranded DNA-binding Protein
Mol Cell Proteomics (2010) 9(1): 145-152
Differentiation of lisinopril and its RSS diastereomer by liquid chromatography combined with collision-induced dissociation mass spectrometry
Cuirong Sun, Peixi Zhu, Nan Hu, Danhua Wang, Yuanjiang Pan
Journal of Mass Spectrometry (2010) 45(1): 89-96
Proteomics Analysis of the Cardiac Myofilament Subproteome Reveals Dynamic
Alterations in Phosphatase Subunit Distribution
Mol Cell Proteomics (2010) 9(3): 497-509
Proteomic analysis of symbiosome membranes in Cnidaria-dinoflagellate endosymbiosis
Shao-En Peng, Yu-Bao Wang, Li-Hsueh Wang, Wan-Nan Uang Chen, Chi-Yu Lu, Lee-Shing Fang, Chii-Shiarng Chen
PROTEOMICS (2010) 10(5): 1002-1016
Peptidomic approach, based on liquid chromatography/electrospray ionization tandem mass spectrometry, for detecting sheep's milk in goat's and cow's cheeses
Chiara Guarino, Fabio Fuselli, Alessandro La Mantia, Lucia Longo, Angelo Faberi, Rosa Maria Marianella
Rapid Communications in Mass Spectrometry (2010) 24(6): 705-713
Proteomic Remodeling of Mitochondrial Oxidative Pathways in Pressure Overload-induced Heart Failure
Bugger H, Schwarzer M, Chen D, Schrepper A, Amorim PA, Schoepe M, Nguyen TD, Mohr FW, Khalimonchuk O, Weimer BC, Doenst T.
Cardiovasc Res (2010) 85(2): 376-84
Application of Proteomic Marker Ensembles to Subcellular Organelle
Identification
Mol Cell Proteomics (2010) 9(2): 388-402
Effect of citrullination on the function and conformation of antithrombin
Ordóñez A, MartÃnez-MartÃnez I, Corrales FJ, Miqueo C, Miñano A, Vicente V, Corral J.
FEBS J (2009) 276(22): 6763-72
MS characterization of qualitative protein polymorphisms in the spinal cords of inbred mouse strains
Stefan Mikkat, Peter Lorenz, Christian Scharf, Xinhua Yu, Michael O. Glocker, Saleh M. Ibrahim
PROTEOMICS (2010) 10(5): 1050-1062
Early activation of the fatty acid metabolism pathway by chronic high glucose exposure in rat insulin secretory ?-cells
Yohann Couté, Yannick Brunner, Domitille Schvartz, Céline Hernandez, Alexandre Masselot, Frédérique Lisacek, Claes B. Wollheim, Jean-Charles Sanchez
PROTEOMICS (2010) 10(1): 59-71
Environmental proteomics: Analysis of structure and function of microbial communities
Thomas Schneider, Kathrin Riedel
PROTEOMICS (2010) 10(4): 785-798
Fish proteome analysis: Model organisms and non-sequenced species
Ignasi Forné, Joaquin Abián, Joan Cerdà
PROTEOMICS (2010) 10(4): 858-872
Proteome Changes during Meat Aging in Tough and Tender Beef Suggest the Importance of Apoptosis and Protein Solubility for Beef Aging and Tenderization
Laville E, Sayd T, Morzel M, Blinet S, Chambon C, Lepetit J, Renand G, Hocquette JF.
J Agric Food Chem (2009) 57(22): 10755-64
Biological and Proteomic Analysis of Venom from the Puerto Rican Racer (Alsophis portoricensis: Dipsadidae)
Weldon CL, Mackessy SP.
Toxicon (2010) 55(2-3): 558-69
Human duodenal proteome modulations by glutamine and antioxidants
Sandrine Thébault, Nicolas Deniel, Alexandra Galland, Stéphane Lecleire, Roland Charlionet, Moïse Coëffier, François Tron, David Vaudry, Pierre Déchelotte
PROTEOMICS - CLINICAL APPLICATIONS (2010) 4(3): 325-336
Comparative proteomic analysis of the short-term responses of rice roots and leaves to cadmium
Lee K, Bae DW, Kim SH, Han HJ, Liu X, Park HC, Lim CO, Lee SY, Chung WS.
J Plant Physiol (2010) 167(3): 161-8
Application of proteomics to neutrophil biology
Gregory C. Luerman, Silvia M. Uriarte, Madhavi J. Rane, Kenneth R. McLeish
Journal of Proteomics (2010) 73(3): 552-561
Identification of arginine- and lysine-methylation in the proteome of Saccharomyces cerevisiae and its functional implications
Pang CN, Gasteiger E, Wilkins MR.
BMC Genomics (2010) 11(1): 92
IF/TA-related metabolic changes--proteome analysis of rat renal allografts
Reuter S, Reiermann S, Wörner R, Schröter R, Edemir B, Buck F, Henning S, Peter-Katalinic J, Vollenbröker B, Amann K, Pavenstädt H, Schlatter E, Gabriëls G.
Nephrol Dial Transplant Early Edition: published 22-Feb-2010
Pig preovulatory oocytes modulate cumulus cell protein and gene expression in vitro
Paradis F, Moore HS, Pasternak JA, Novak S, Dyck MK, Dixon WT, Foxcroft GR.
Mol Cell Endocrinol Early Edition: published 4-Feb-2010
Exploring the midgut proteome of partially fed female cattle tick (Rhipicephalus (Boophilus) microplus)
Kongsuwan K, Josh P, Zhu Y, Pearson R, Gough J, Colgrave ML.
J Insect Physiol (2010) 56(2): 212-26
Shotgun proteomic analysis on the embryos of silkworm Bombyx mori at the end of organogenesis
Li JY, Hosseini Moghaddam SH, Chen JE, Chen M, Zhong BX.
Insect Biochem Mol Biol Early Edition: published 3-Feb-2010
Discovery of biomarkers that reflect the intake of sodium selenate by nutritional proteomics
Mahn A, Muñoz MC, Zamorano MJ.
J Chromatogr Sci (2009) 47(9): 840-3
Distinct proteomic features of two fibrogenic liver cell populations: Hepatic stellate cells and portal myofibroblasts
Nelly Bosselut, Chantal Housset, Paulo Marcelo, Colette Rey, Thorsten Burmester, Jöelle Vinh, Michel Vaubourdolle, Axelle Cadoret, Bruno Baudin
PROTEOMICS (2010) 10(5): 1017-1028
Proteomic examination of Leishmania chagasi plasma membrane proteins: Contrast between avirulent and virulent (metacyclic) parasite forms
Chaoqun Yao, Yalan Li, John E. Donelson, Mary E. Wilson
PROTEOMICS - CLINICAL APPLICATIONS (2010) 4(1): 4-16
The Nutrigenetics of Hyperhomocysteinemia: QUANTITATIVE PROTEOMICS REVEALS
DIFFERENCES IN THE METHIONINE CYCLE ENZYMES OF GENE-INDUCED VERSUS
Mol Cell Proteomics (2010) 9(3): 471-485
The proteome map of spinach leaf peroxisomes indicates partial compartmentalization of phylloquinone (vitamin K1) biosynthesis in plant peroxisomes
Babujee L, Wurtz V, Ma C, Lueder F, Soni P, van Dorsselaer A, Reumann S.
J Exp Bot Early Edition: published 11-Feb-2010
A proteomic analysis of the ventral hippocampus of rats subjected to maternal separation and escitalopram treatment
Marais L, Hattingh SM, Stein DJ, Daniels WM.
Metab Brain Dis (2009) 24(4): 569-86
Isolation and biochemical characterisation of lipid rafts from Atlantic cod (Gadus morhua) intestinal enterocytes
Gylfason GA, Knútsdóttir E, Asgeirsson B.
Comp Biochem Physiol B Biochem Mol Biol (2010) 155(1): 86-95
Subcellular Distribution of Tail-Anchored Proteins in Arabidopsis
Kriechbaumer V, Shaw R, Mukherjee J, Bowsher CG, Harrison AM, Abell BM.
Traffic (2009) 10(12): 1753-64
Quantitative Nuclear Proteomics Identifies mTOR Regulation of DNA Damage
Response
Mol Cell Proteomics (2010) 9(2): 403-414
Effect of chronic mild stress and imipramine on the proteome of the rat dentate gyrus
Kedracka-Krok S, Fic E, Jaciuk M, Jankowska U, Gruca P, Papp M, Kusmider M, Solich J, Debski J, Dadlez M, Dziedzicka-Wasylewska M.
J Neurochem Early Edition: published 23-Feb-2010
Changes in the proteome of Salmonella enterica serovar Thompson as stress adaptation to sublethal concentrations of thymol
Rosangela Di Pasqua, Gianfranco Mamone, Pasquale Ferranti, Danilo Ercolini, Gianluigi Mauriello
PROTEOMICS (2010) 10(5): 1040-1049
Mass and charge selective protein fractionation for the differential analysis of T-cell and CD34+ stem cell proteins from cord blood
Linda Ly, Valerie C. Wasinger
Journal of Proteomics (2010) 73(3): 571-578
Physiological and proteomic approaches to address heat tolerance during anthesis in rice (Oryza sativa L.)
Jagadish SV, Muthurajan R, Oane R, Wheeler TR, Heuer S, Bennett J, Craufurd PQ.
J Exp Bot (2010) 61(1): 143-56
Proteomic analysis of GLUT4 storage vesicles (GSVS) reveals low-density lipoprotein receptor-related protein 1 (LRP1) to be an important vesicle component and target of insulin signaling
Jedrychowski MP, Gartner CA, Gygi SP, Zhou L, Herz J, Kandror KV, Pilch PF.
J Biol Chem (2010) 285(1): 104-14
The dynamic range problem in the analysis of the plasma proteome
Glen L. Hortin, Denis Sviridov
Journal of Proteomics (2010) 73(3): 629-636
Comparative proteomics of erythrocyte aging in vivo and in vitro
G.J.C.G.M. Bosman, E. Lasonder, Y.A.M. Groenen-Dopp, F.L.A. Willekens, J.M. Werre, V.M.J. Novotny
Journal of Proteomics (2010) 73(3): 396-402
Isatin-binding proteins of rat and mouse brain: Proteomic identification and optical biosensor validation
Olga Buneeva, Oksana Gnedenko, Victor Zgoda, Arthur Kopylov, Vivette Glover, Alexis Ivanov, Alexei Medvedev, Alexander Archakov
PROTEOMICS (2010) 10(1): 23-37
Pre-analytical factors in clinical proteomics investigations: Impact of ex vivo protein modifications for multiple sclerosis biomarker discovery
Damiana Pieragostino, Francesca Petrucci, Piero Del Boccio, Dante Mantini, Alessandra Lugaresi, Sara Tiberio, Marco Onofrj, Domenico Gambi, Paolo Sacchetta, Carmine Di Ilio, Giorgio Federici, Andrea Urbani
Journal of Proteomics (2010) 73(3): 579-592
Substrate screening identifies a novel target sequence for the proteasomal activity regulated by ionizing radiation
Angela Broggini-Tenzer, Andreas Hollenstein, Zbigniew Pianowski, Andrea Wampfler, Polina Furmanova, Nicolas Winssinger, Martin Pruschy
PROTEOMICS (2010) 10(2): 304-314
PYR/PYL/RACR family members are major in vivo ABI1 protein phosphatase 2C-interacting proteins in Arabidopsis
Nishimura N, Sarkeshik A, Nito K, Park SY, Wang A, Carvalho P, Lee S, Caddell DF, Cutler SR, Chory J, Yates Iii JR, Schroeder JI.
Plant J (2010) 61(2): 290-9
Proteomic investigation of enzymes involved in 2-ethylhexyl nitrate biodegradation in Mycobacterium austroafricanum IFP 2173
Nicolau E, Kuhn L, Marchal R, Jouanneau Y.
Res Microbiol (2009) 160(10): 838-47
A Quantitative Proteomics Analysis of Subcellular Proteome Localization and
Changes Induced by DNA Damage
Mol Cell Proteomics (2010) 9(3): 457-470
A differential proteomics study of Caenorhabditis elegans infected with Aeromonas hydrophila
Bogaerts A, Temmerman L, Boerjan B, Husson SJ, Schoofs L, Verleyen P.
Dev Comp Immunol Early Edition: published 8-Feb-2010
The genome and structural proteome of an ocean siphovirus: a new window into the cyanobacterial 'mobilome'
Sullivan MB, Krastins B, Hughes JL, Kelly L, Chase M, Sarracino D, Chisholm SW.
Environ Microbiol (2009) 11(11): 2935-51
Herpes simplex virus proteins ICP27 and UL47 associate with polyadenylate-binding protein and control its sub-cellular distribution
Dobrikova E, Shveygert M, Walters R, Gromeier M.
J Virol (2010) 84(1): 270-9
Proteomic characterization of a pilR regulatory mutant of Azoarcus sp. strain BH72 with the aid of gel-based and gel-free approaches
Lena Hauberg, Frank Schmidt, Christian Scharf, Juliane Dörr, Uwe Völker, Barbara Reinhold-Hurek
PROTEOMICS (2010) 10(3): 458-469
Current knowledge about the functional roles of phosphorylative changes of membrane proteins in normal and diseased red cells
Antonella Pantaleo, Lucia De Franceschi, Emanuela Ferru, Rosa Vono, Franco Turrini
Journal of Proteomics (2010) 73(3): 445-455
Proteomic study of linuron and 3,4-dichloroaniline degradation by Variovorax sp. WDL1: Evidence for the involvement of an aniline dioxygenase-related multicomponent protein
Breugelmans P, Leroy B, Bers K, Dejonghe W, Wattiez R, De Mot R, Springael D.
Res Microbiol Early Edition: published 7-Feb-2010
Proteomic analysis of mammalian gametes and sperm-oocyte interactions
Sutovsky P.
Soc Reprod Fertil Suppl (2009) 66: 103-16
Characterization of the retinal proteome during rod photoreceptor genesis
Barnhill AE, Hecker LA, Kohutyuk O, Buss JE, Honavar VG, Greenlee HW.
BMC Res Notes (2010) 3(1): 25
A proteome map of the pituitary melanotrope cell activated by black-background adaptation of Xenopus laevis
Bart Devreese, Kjell Sergeant, Nick H. M. Van Bakel, Griet Debyser, Jozef Van Beeumen, Gerard J. M. Martens, François Van Herp
PROTEOMICS (2010) 10(3): 574-580
Acute metal stress in Populus tremula×P. alba (717-1B4 genotype): Leaf and cambial proteome changes induced by cadmium2+
Thomas C. Durand, Kjell Sergeant, Sébastien Planchon, Sabine Carpin, Philippe Label, Domenico Morabito, Jean-François Hausman, Jenny Renaut
PROTEOMICS (2010) 10(3): 349-368
Purification and Mass Spectrometric Characterization of Sesbania aculeata (Dhaincha) Stem Lectin
Biswas S, Agrawal P, Saroha A, Das HR.
Protein J (2009) 28(9-10): 391-9
Diamide triggers mainly S-thiolations in the cytoplasmic proteome of Bacillus subtilis and Staphylococcus aureus
Pöther DC, Liebeke M, Hochgräfe F, Antelmann H, Becher D, Lalk M, Lindequist U, Borovok I, Cohen G, Aharonowitz Y, Hecker M.
J Bacteriol (2009) 191(24): 7520-30
Quantitative proteomic analysis of G-protein signalling in Stagonospora nodorum using isobaric tags for relative and absolute quantification
Tammy Casey, Peter S. Solomon, Scott Bringans, Kar-Chun Tan, Richard P. Oliver, Richard Lipscombe
PROTEOMICS (2010) 10(1): 38-47
Proteomics as a probe of microbial pathogenesis and its molecular boundaries
Bhavsar AP, Auweter SD, Finlay BB.
Future Microbiol (2010) 5: 253-65.
Delayed Correlation of mRNA and Protein Expression in Rapamycin-treated
Cells and a Role for Ggc1 in Cellular Sensitivity to Rapamycin
Mol Cell Proteomics (2010) 9(2): 271-284
Caenorhabditis elegans proteomics comes of age
Yhong-Hee Shim, Young-Ki Paik
PROTEOMICS (2010) 10(4): 846-857
Proteomic analysis of porcine pancreas development
Choi JS, Cho YK, Yoon SH, Kwon SO, Koo DB, Yu K.
BMB Rep (2009) 42(10): 661-6
Exposure of the blue mussel, Mytilus edulis, to gold nanoparticles and the pro-oxidant menadione
Tedesco S, Doyle H, Blasco J, Redmond G, Sheehan D.
Comp Biochem Physiol C Toxicol Pharmacol (2010) 151(2): 167-74
New proteins identified in epididymal fluid from the platypus (Ornithorhynchus anatinus)
Dacheux JL, Dacheux F, Labas V, Ecroyd H, Nixon B, Jones RC.
Reprod Fertil Dev (2009) 21(8): 1002-7
Investigation of the formation and recognition of a dimeric G-quadruplex in the promoter of Bcl-2 proto-oncogene by electrospray ionization mass spectrometry
Huihui Li, Qiang Zhang, Gu Yuan
Rapid Communications in Mass Spectrometry (2010) 24(3): 393-395
Proteomics of Saccharomyces cerevisiae Organelles
Elena Wiederhold, Liesbeth M. Veenhoff, Bert Poolman, and Dirk Jan Slotboom
Mol Cell Proteomics (2010) 9(3): 431-445
Kinase selectivity potential for inhibitors targeting the ATP binding site: a network analysis
Danzhi Huang, Ting Zhou, Karine Lafleur, Cristina Nevado, and Amedeo Caflisch
Bioinformatics (2010) 26(2): 198-204
Cardioprotection Leads to Novel Changes in the Mitochondrial Proteome
Wong R, Aponte AM, Steenbergen C, Murphy E.
Am J Physiol Heart Circ Physiol (2010) 298(1): H75-91
Visual proteomics of the human pathogen Leptospira interrogans
Beck M, Malmström JA, Lange V, Schmidt A, Deutsch EW, Aebersold R.
Nat Methods (2009) 6(11): 817-23
Analysis of HK-2 cells exposed to oxalate and calcium oxalate crystals: proteomic insights into the molecular mechanisms of renal injury and stone formation
Chen S, Gao X, Sun Y, Xu C, Wang L, Zhou T.
Urol Res (2010) 38(1): 7-15
Quantitative erythrocyte membrane proteome analysis with Blue-Native/SDS PAGE
Renske A. van Gestel, Wouter W. van Solinge, H.W.P. van der Toorn, Gert Rijksen, Albert J.R. Heck, Richard van Wijk, Monique Slijper
Journal of Proteomics (2010) 73(3): 456-465
The genome of cyprinid herpesvirus 3 encodes 40 proteins incorporated in mature virions
Michel B, Leroy B, Stalin Raj V, Lieffrig F, Mast J, Wattiez R, Vanderplasschen A, Costes B.
J Gen Virol (2010) 91(Pt 2): 452-62
The Mycobacterium bovis Bacille Calmette-Guerin Phagosome Proteome
Bai-Yu Lee, Deepa Jethwaney, Birgit Schilling, Daniel L. Clemens, Bradford
Mol Cell Proteomics (2010) 9(1): 32-53
An approach to characterize the membrane proteome of Candida albicans
Rupp S.
Future Microbiol (2010) 5: 147-51.
A Proteomic Investigation of Ligand-dependent HSP90 Complexes Reveals
CHORDC1 as a Novel ADP-dependent HSP90-interacting Protein
Mol Cell Proteomics (2010) 9(2): 255-270
The immunogenicity of the liposome-associated outer membrane proteins (OMPs) of Moraxella catarrhalis
Augustyniak D, Mleczko J, Gutowicz J.
Cell Mol Biol Lett (2010) 15(1): 70-89
Molecular Morphology of the Chick Heart Visualized by MALDI Imaging Mass Spectrometry
Grey AC, Gelasco AK, Section J, Moreno-Rodriguez RA, Krug EL, Schey KL.
Anat Rec (Hoboken) Early Edition: published 23-Feb-2010
Proteomics of Plasma Membranes from Poplar Trees Reveals Tissue
Distribution of Transporters, Receptors, and Proteins in Cell Wall
Mol Cell Proteomics (2010) 9(2): 368-387
Proteomic analysis of the metabolic adaptation of the biocontrol agent Pseudozyma flocculosa leading to glycolipid production
Hammami W, Chain F, Michaud D, Belanger RR.
Proteome Science (2010) 8(1): 7
Differential expression of proteins in fetal brains of alcohol-treated prenatally C57BL/6 mice: A proteomic investigation
Youssef Sari, Min Zhang, Yehia Mechref
ELECTROPHORESIS (2010) 31(3): 483-496
A proteomics approach for the analysis of hemolymph proteins involved in the immediate defense response of the soft tick, Ornithodoros savignyi, when challenged with Candida albicans
Stopforth E, Neitz AW, Gaspar AR.
Exp Appl Acarol Early Edition: published 26-Feb-2010
Proteomics-based Refinement of Deinococcus deserti Genome Annotation
Reveals an Unwonted Use of Non-canonical Translation Initiation Codons
Mol Cell Proteomics (2010) 9(2): 415-426
Proteomic change of peripheral lymphocytes from scald injury and Pseudomonas aeruginosa sepsis in rabbits
Zhang PH, Yang LR, Li LL, Zeng JZ, Ren LC, Liang PF, Huang XY.
Burns (2010) 36(1): 82-8
Umbilical cord blood stem cells: Towards a proteomic approach
Angelo D'Alessandro, Giancarlo Liumbruno, Giuliano Grazzini, Simonetta Pupella, Letizia Lombardini, Lello Zolla
Journal of Proteomics (2010) 73(3): 468-482
Two-dimensional proteome reference map for the radiation-resistant bacterium Deinococcus geothermalis
Christina Liedert, Jörg Bernhardt, Dirk Albrecht, Birgit Voigt, Michael Hecker, Mirja Salkinoja-Salonen, Peter Neubauer
PROTEOMICS (2010) 10(3): 555-563
Beta2-microglobulin is involved in the immune response of large yellow croaker to Aeromonas hydrophila: A proteomic based study
Chen X, Wu Z, Yu S, Wang S, Peng X.
Fish Shellfish Immunol (2010) 28(1): 151-8
Proteomics-Based Safety Evaluation of Multi-Walled Carbon Nanotubes
Haniu H, Matsuda Y, Takeuchi K, Kim YA, Hayashi T, Endo M.
Toxicol Appl Pharmacol (2010) 242(3): 256-62
Neutrophil extracellular traps contain calprotectin, a cytosolic protein complex involved in host defense against Candida albicans
Urban CF, Ermert D, Schmid M, Abu-Abed U, Goosmann C, Nacken W, Brinkmann V, Jungblut PR, Zychlinsky A.
PLoS Pathog (2009) 5(10): e1000639
Analysis of the budding yeast pH 4-7 proteome in meiosis
Julia Grassl, Caitriona Scaife, Julie Polden, Catherine N. Daly, Maria G. Iacovella, Michael J. Dunn, Rosemary K. Clyne
PROTEOMICS (2010) 10(3): 506-519
Changes in the proteomes of the hemocytes and fat bodies of the flesh fly Sarcophaga bullata larvae after infection by Escherichia coli
Masova A, Sanda M, Jiracek J, Selicharova I.
Proteome Science (2010) 8: 1.
A centrifugal ultrafiltration strategy for isolating the low-molecular weight (<=25K) component of human plasma proteome
David W. Greening, Richard J. Simpson
Journal of Proteomics (2010) 73(3): 637-648
Detection of Differentially Expressed Basal Cell Proteins by Mass
Spectrometry
Mol Cell Proteomics (2010) 9(2): 351-361
Application of free-flow IEF to identify protein candidates changing under microgravity conditions
Jessica Pietsch, Richard Kussian, Albert Sickmann, Johann Bauer, Gerhard Weber, Mikkel Nissum, Kriss Westphal, Marcel Egli, Jirka Grosse, Johann Schönberger, Robert Wildgruber, Manfred Infanger, Daniela Grimm
PROTEOMICS (2010) 10(5): 904-913
Microbial Protein in Soil: Influence of Extraction Method and C Amendment on Extraction and Recovery
Taylor EB, Williams MA.
Microb Ecol Early Edition: published 21-Oct-2009
Identification of the chitin binding proteins from the larval proteins of silkworm, Bombyx mori
Tang L, Liang J, Zhan Z, Xiang Z, He N.
Insect Biochem Mol Biol Early Edition: published 8-Feb-2010
A food safety control low mass-range proteomics platform for the detection of illicit treatments in veal calves by MALDI-TOF-MS serum profiling
Della Donna L, Ronci M, Sacchetta P, Di Ilio C, Biolatti B, Federici G, Nebbia C, Urbani A.
Biotechnol J (2009) 4(11): 1596-609
Analysis of pupal head proteome and its alteration in diapausing pupae of Helicoverpa armigera
Chen L, Ma W, Wang X, Niu C, Lei C.
J Insect Physiol (2010) 56(3): 247-52
Proteomics Analysis Reveals Overlapping Functions of Clustered
Protocadherins
Mol Cell Proteomics (2010) 9(1): 71-83
Regulation of transforming growth factor-{beta}-dependent cyclooxygenase-2 expression in fibroblasts
Matsumura T, Suzuki T, Aizawa K, Sawaki D, Munemasa Y, Ishida J, Nagai R.
J Biol Chem (2009) 284(51): 35861-71
Dynamics of the Dictyostelium discoideum mitochondrial proteome during vegetative growth, starvation and early stages of development
Malgorzata Czarna, Gregory Mathy, Allan Mac'Cord, Rowan Dobson, Wieslawa Jarmuszkiewicz, Claudine M. Sluse-Goffart, Pierre Leprince, Edwin De Pauw, Francis E. Sluse
PROTEOMICS (2010) 10(1): 6-22
Epigenetics to proteomics: From yeast to brain
Purnima Bhargava
PROTEOMICS (2010) 10(4): 749-770
A two-dimensional electrophoresis reference map for the bovine placenta during late pregnancy
Hong Rye Kim, Rong Xun Han, Jong Taek Yoon, Chang Sik Park, Dong Il Jin
PROTEOMICS (2010) 10(3): 564-573
Proteome profiling reveals tissue-specific protein expression in the male reproductive system of Drosophila melanogaster
Yamamoto MT, Takemori N.
Fly (Austin) Early Edition: published 3-Jan-2010
Shotgun Proteomics Analysis of Hibernating Arctic Ground Squirrels
Chunxuan Shao, Yuting Liu, Hongqiang Ruan, Ying Li, Haifang Wang, Franziska
Mol Cell Proteomics (2010) 9(2): 313-326
In vivo pharmaco-proteomic analysis of hydroxyurea induced changes in the sickle red blood cell membrane proteome
Swati S. Ghatpande, Pankaj K. Choudhary, Charles T. Quinn, Steven R. Goodman
Journal of Proteomics (2010) 73(3): 619-626
Thioredoxin targets of the plant chloroplast lumen and their implications for plastid function
Michael Hall, Alejandro Mata-Cabana, Hans-Erik Åkerlund, Francisco J. Florencio, Wolfgang P. Schröder, Marika Lindahl, Thomas Kieselbach
PROTEOMICS (2010) 10(5): 987-1001
A comparative proteomics approach to detect unintended effects in transgenic Arabidopsis
Ren Y, Lv J, Wang H, Li L, Peng Y, Qu LJ.
J Genet Genomics (2009) 36(10): 629-39
The secreted and surface proteomes of the adult stage of the carcinogenic human liver fluke Opisthorchis viverrini
Jason Mulvenna, Banchob Sripa, Paul J. Brindley, Jeffrey Gorman, Malcolm K. Jones, Michelle L. Colgrave, Alun Jones, Sujeevi Nawaratna, Thewarach Laha, Sutas Suttiprapa, Michael J. Smout, Alex Loukas
PROTEOMICS (2010) 10(5): 1063-1078
Combined genomic and proteomic approaches identify gene clusters involved in anaerobic 2-methylnaphthalene degradation in the sulfate-reducing enrichment culture N47
Selesi D, Jehmlich N, von Bergen M, Schmidt F, Rattei T, Tischler P, Lueders T, Meckenstock RU.
J Bacteriol (2010) 192(1): 295-306
Analysis of proteomic changes associated with sperm capacitation through the combined use of IPG-strip pre-fractionation followed by RP chromatography LC-MS/MS analysis
Mark A. Baker, Gabi Reeves, Louise Hetherington, R. John Aitken
PROTEOMICS (2010) 10(3): 482-495
Differential protein expression on the cell surface of colorectal cancer cells associated to tumor metastasis
Jose Luis Luque-García, Jorge Luis Martínez-Torrecuadrada, Carolina Epifano, Marta Cañamero, Ingrid Babel, J. Ignacio Casal
PROTEOMICS (2010) 10(5): 940-952
Impact of the transcriptional regulator, Ace2, on the Candida glabrata secretome
David A. Stead, Janet Walker, Lucy Holcombe, Samuel R. S. Gibbs, Zhikang Yin, Laura Selway, Geraldine Butler, Alistair J. P. Brown, Ken Haynes
PROTEOMICS (2010) 10(2): 212-223
Sequestosome-1/p62 is the key intracellular target of innate defense regulator peptide
Yu HB, Kielczewska A, Rozek A, Takenaka S, Li Y, Thorson L, Hancock RE, Guarna MM, North JR, Foster LJ, Donini O, Finlay BB.
J Biol Chem (2009) 284(52): 36007-11
Alterations in cellular proteome and secretome upon differentiation from monocyte to macrophage by treatment with phorbol myristate acetate: Insights into biological processes
Kitisak Sintiprungrat, Nilubon Singhto, Supachok Sinchaikul, Shui-Tein Chen, Visith Thongboonkerd
Journal of Proteomics (2010) 73(3): 602-618
Quantitative Proteomics Analysis of Chondrogenic Differentiation of
C3H10T1/2 Mesenchymal Stem Cells by iTRAQ Labeling Coupled with On-line
Mol Cell Proteomics (2010) 9(3): 550-564
Proteome study of the phloem sap of pumpkin using multidimensional protein identification technology
Cho WK, Chen XY, Rim Y, Chu H, Kim S, Kim SW, Park ZY, Kim JY.
J Plant Physiol Early Edition: published 4-Feb-2010
Proteome, Phosphoproteome, and Hydroxyproteome of Liver Mitochondria in
Diabetic Rats at Early Pathogenic Stages
Mol Cell Proteomics (2010) 9(1): 100-116
The effects of extracellular adenosine 5?-triphosphate on the tobacco proteome
Stephen Chivasa, William J. Simon, Alex M. Murphy, Keith Lindsey, John P. Carr, Antoni R. Slabas
PROTEOMICS (2010) 10(2): 235-244
Proteomic Analysis of Vascular Endothelial Cells-Effects of Laminar Shear Stress and High Glucose
Wang XL, Fu A, Spiro C, Lee HC.
J Proteomics Bioinform (2009) 2: 445.
A Protein Phosphatase 2C, responsive to the bacterial effector AvrRpm1 but not to the AvrB effector, regulates defense responses in Arabidopsis
Widjaja I, Lassowskat I, Bethke G, Eschen-Lippold L, Long HH, Naumann K, Dangl JL, Scheel D, Lee J.
Plant J (2010) 61(2): 249-58
Red blood cell (RBC) membrane proteomics - Part I: Proteomics and RBC physiology
Erica M. Pasini, Hans U. Lutz, Matthias Mann, Alan W. Thomas
Journal of Proteomics (2010) 73(3): 403-420
Gilthead sea bream liver proteome altered at low temperatures by oxidative stress
Antoni Ibarz, Miguel Martín-Pérez, Josefina Blasco, David Bellido, Eliandre de Oliveira, Jaume Fernández-Borràs
PROTEOMICS (2010) 10(5): 963-975
Blood-related proteomics
Giancarlo Liumbruno, Angelo D'Alessandro, Giuliano Grazzini, Lello Zolla
Journal of Proteomics (2010) 73(3): 483-507
Proteomics Analysis of the Nucleolus in Adenovirus-infected Cells
Yun W. Lam, Vanessa C. Evans, Kate J. Heesom, Angus I. Lamond, and David A.
Mol Cell Proteomics (2010) 9(1): 117-130
Endogenous Peptide Discovery of the Rat Circadian Clock: A FOCUSED STUDY OF
THE SUPRACHIASMATIC NUCLEUS BY ULTRAHIGH PERFORMANCE TANDEM MASS
Mol Cell Proteomics (2010) 9(2): 285-297
Proteomic analysis of blue light-induced twining response in Cuscuta australis
Li D, Wang L, Yang X, Zhang G, Chen L.
Plant Mol Biol (2010) 72(1-2): 205-13
Identification, RNAi Knockdown, and Functional Analysis of an Ejaculate Protein that Mediates a Postmating, Prezygotic Phenotype in a Cricket
Marshall JL, Huestis DL, Hiromasa Y, Wheeler S, Oppert C, Marshall SA, Tomich JM, Oppert B.
PLoS One (2009) 4(10): e7537
The proteome of lentil (Lens culinaris Medik.) seeds: Discriminating between landraces
Gabriella Stefania Scippa, Mariapina Rocco, Manuela Ialicicco, Dalila Trupiano, Vincenzo Viscosi, Michela Di Michele, Simona Arena, Donato Chiatante, Andrea Scaloni
ELECTROPHORESIS (2010) 31(3): 497-506
Murine fecal proteomics: A model system for the detection of potential biomarkers for colorectal cancer
Ang CS, Rothacker J, Patsiouras H, Burgess AW, Nice EC.
J Chromatogr A Early Edition: published 8-Oct-2009
Increased protein synthesis by cells exposed to a 1,800-MHz radio-frequency mobile phone electromagnetic field, detected by proteome profiling
Gerner C, Haudek V, Schandl U, Bayer E, Gundacker N, Hutter HP, Mosgoeller W.
Int Arch Occup Environ Health Early Edition: published 10-Feb-2010
Proteome profile in Myotonic Dystrophy type 2 myotubes reveals dysfunction in protein processing and mitochondrial pathways
Rusconi F, Mancinelli E, Colombo G, Cardani R, Da Riva L, Bongarzone I, Meola G, Zippel R.
Neurobiol Dis Early Edition: published 3-Feb-2010
Plasma and urine biomarkers in acute viral hepatitis E
Taneja S, Sen S, Gupta VK, Aggarwal R, Jameel S.
Proteome Science (2009) 7(1): 39
Proteomic change of peripheral lymphocytes from scald injury and Pseudomonas aeruginosa sepsis in rabbits
Zhang PH, Yang LR, Li LL, Zeng JZ, Ren LC, Liang PF, Huang XY.
Burns (2010) 36(1): 82-8
Customising an antibody leukocyte capture microarray for systemic lupus erythematosus: Beyond biomarker discovery
Joshua W. K. Ho, Ming-Wei Lin, Stephen Adelstein, Cristobal G. dos Remedios
PROTEOMICS - CLINICAL APPLICATIONS (2010) 4(2): 179-189
High-resolution tissue imaging on an orbitrap mass spectrometer by desorption electrospray ionization mass spectrometry
N. E. Manicke, A. L. Dill, D. R. Ifa, R. G. Cooks
Journal of Mass Spectrometry (2010) 45(2): 223-226
SELDI-TOF biomarker signatures for cystic fibrosis, asthma and chronic obstructive pulmonary disease
Gomes-Alves P, Imrie M, Gray RD, Nogueira P, Ciordia S, Pacheco P, Azevedo P, Lopes C, de Almeida AB, Guardiano M, Porteous DJ, Albar JP, Boyd AC, Penque D.
Clin Biochem (2010) 43(1-2): 168-77
Shotgun proteomics identifies proteins specific for acute renal transplant rejection
Tara K. Sigdel, Amit Kaushal, Marina Gritsenko, Angela D. Norbeck, Wei-Jun Qian, Wenzhong Xiao, David G. Camp II, Richard D. Smith, Minnie M. Sarwal
PROTEOMICS - CLINICAL APPLICATIONS (2010) 4(1): 32-47
Urinary proteomics before and after extracorporeal circulation in patients with and without acute kidney injury
Aregger F, Pilop C, Uehlinger DE, Brunisholz R, Carrel TP, Frey FJ, Frey BM.
J Thorac Cardiovasc Surg (2010) 139(3): 692-700
Identification of HSP27 as a potential tumor marker for colorectal cancer by the two-dimensional polyacrylamide gel electrophoresis
Liu W, Ma Y, Huang L, Peng J, Zhang P, Zhang H, Chen J, Qin H.
Mol Biol Rep Early Edition: published 16-Oct-2009
Discovery of putative oocyte quality markers by comparative ExacTag proteomics
Michael D. Powell, Gaurishankar Manandhar, Lee Spate, Miriam Sutovsky, Shawn Zimmerman, Shrikesh C. Sachdev, Mark Hannink, Randall S. Prather, Peter Sutovsky
PROTEOMICS - CLINICAL APPLICATIONS (2010) 4(3): 337-351
Identification of candidate biomarkers with cancer-specific glycosylation in the tissue and serum of endometrioid ovarian cancer patients by glycoproteomic analysis
Karen L. Abbott, Jae-Min Lim, Lance Wells, Benedict B. Benigno, John F. McDonald, Michael Pierce
PROTEOMICS (2010) 10(3): 470-481
Proteomic Remodeling of Mitochondrial Oxidative Pathways in Pressure Overload-induced Heart Failure
Bugger H, Schwarzer M, Chen D, Schrepper A, Amorim PA, Schoepe M, Nguyen TD, Mohr FW, Khalimonchuk O, Weimer BC, Doenst T.
Cardiovasc Res (2010) 85(2): 376-84
Tear proteomics in evaporative dry eye disease
Versura P, Nanni P, Bavelloni A, Blalock WL, Piazzi M, Roda A, Campos EC.
Eye (Lond) Early Edition: published 12-Feb-2010
Lipocalin-Type Prostaglandin D Synthase and Egg White Cystatin React with IgE Antibodies from Children with Egg Allergy
Suzuki M, Fujii H, Fujigaki H, Shinoda S, Takahashi K, Saito K, Wada H, Kimoto M, Kondo N, Seishima M.
Allergol Int Early Edition: published 25-Feb-2010
Regulation of transforming growth factor-{beta}-dependent cyclooxygenase-2 expression in fibroblasts
Matsumura T, Suzuki T, Aizawa K, Sawaki D, Munemasa Y, Ishida J, Nagai R.
J Biol Chem (2009) 284(51): 35861-71
Robust biomarker identification for cancer diagnosis with ensemble feature selection methods
Thomas Abeel, Thibault Helleputte, Yves Van de Peer, Pierre Dupont, and Yvan Saeys
Bioinformatics (2010) 26(3): 392-398
Application of proteomic analysis to the study of renal diseases
Smith MP, Banks RE, Wood SL, Lewington AJ, Selby PJ.
Nat Rev Nephrol (2009) 5(12): 701-12
Colorectal cancer proteomics, molecular characterization and biomarker discovery
Rodrigo Barderas, Ingrid Babel, José Ignacio Casal
PROTEOMICS - CLINICAL APPLICATIONS (2010) 4(2): 159-178
Identification of Targeted Analyte Clusters for Studies of Schizophrenia
Tammy M. K. Cheng, Yu-En Lu, Paul C. Guest, Hassan Rahmoune, Laura W.
Mol Cell Proteomics (2010) 9(3): 510-522
Analysis of HK-2 cells exposed to oxalate and calcium oxalate crystals: proteomic insights into the molecular mechanisms of renal injury and stone formation
Chen S, Gao X, Sun Y, Xu C, Wang L, Zhou T.
Urol Res (2010) 38(1): 7-15
"Self-nonself" peptides in the design of vaccines
Kanduc D.
Curr Pharm Des (2009) 15(28): 3283-9
Banking of clinical samples for proteomic biomarker studies: A consideration of logistical issues with a focus on pre-analytical variation
David H. Jackson, Rosamonde E. Banks
PROTEOMICS - CLINICAL APPLICATIONS (2010) 4(3): 250-270
Stored red blood cells: A changing universe waiting for its map(s)
Niels Lion, David Crettaz, Olivier Rubin, Jean-Daniel Tissot
Journal of Proteomics (2010) 73(3): 374-385
Relationships between hematopoiesis and hepatogenesis in the midtrimester fetal liver characterized by dynamic transcriptomic and proteomic profiles
Guo Y, Zhang X, Huang J, Zeng Y, Liu W, Geng C, Li KW, Yang D, Wu S, Wei H, Han Z, Qian X, Jiang Y, He F.
PLoS One (2009) 4(10): e7641
Proteome of human endometrium: Identification of differentially expressed proteins in proliferative and secretory phase endometrium
Priyanka Rai, Venkatesh Kota, Curam Sreenivasacharlu Sundaram, Mamta Deendayal, Sisinthy Shivaji
PROTEOMICS - CLINICAL APPLICATIONS (2010) 4(1): 48-59
Proteomic examination of Leishmania chagasi plasma membrane proteins: Contrast between avirulent and virulent (metacyclic) parasite forms
Chaoqun Yao, Yalan Li, John E. Donelson, Mary E. Wilson
PROTEOMICS - CLINICAL APPLICATIONS (2010) 4(1): 4-16
Functional proteomics of kallikrein-related peptidases in ovarian cancer ascites fluid
Oikonomopoulou K, Batruch I, Smith CR, Soosaipillai A, Diamandis EP, Hollenberg MD.
Biol Chem Early Edition: published 24-Feb-2010
Proteomics Analysis of the Nucleolus in Adenovirus-infected Cells
Yun W. Lam, Vanessa C. Evans, Kate J. Heesom, Angus I. Lamond, and David A.
Mol Cell Proteomics (2010) 9(1): 117-130
Encapsulated living choroid plexus cells: potential long-term treatments for central nervous system disease and trauma
Skinner SJ, Geaney MS, Lin H, Muzina M, Anal AK, Elliott RB, Tan PL.
J Neural Eng (2009) 6(6): 65001
Novel approaches for mechanistic understanding and predicting preeclampsia
Kalkunte S, Lai Z, Norris WE, Pietras LA, Tewari N, Boij R, Neubeck S, Markert UR, Sharma S.
J Reprod Immunol (2009) 83(1-2): 134-8
Over-optimism in bioinformatics research
Anne-Laure Boulesteix
Bioinformatics (2010) 26(3): 437-439
The stability of the circulating human proteome to variations in sample collection and handling procedures measured with an aptamer-based proteomics array
Rachel Ostroff, Trudi Foreman, Tracy R. Keeney, Suzanne Stratford, Jeffrey J. Walker, Dom Zichi
Journal of Proteomics (2010) 73(3): 649-666
Differential expression proteomics of human colorectal cancer based on a syngeneic cellular model for the progression of adenoma to carcinoma
Udo Roth, Hanieh Razawi, Julia Hommer, Katja Engelmann, Tilo Schwientek, Stefan Müller, Stephan E. Baldus, Georgios Patsos, Anthony P. Corfield, Christos Paraskeva, Franz-Georg Hanisch
PROTEOMICS (2010) 10(2): 194-202
Proteome analysis reveals candidate markers of disease progression in amyotrophic lateral sclerosis (ALS)
Brettschneider J, Lehmensiek V, Mogel H, Pfeifle M, Dorst J, Hendrich C, Ludolph AC, Tumani H.
Neurosci Lett (2010) 468(1): 23-7
Urinary proteome analysis identifies infants but not older children requiring pyeloplasty
Drube J, Zürbig P, Schiffer E, Lau E, Ure B, Glüer S, Kirschstein M, Pape L, Decramer S, Bascands JL, Schanstra JP, Mischak H, Ehrich JH.
Pediatr Nephrol Early Edition: published 24-Feb-2010
Emerging miniaturized proteomic technologies to study cell signaling in clinical samples
Gujral TS, MacBeath G.
Sci Signal (2009) 2(93): pe65
Proteome profiling in murine models of multiple sclerosis: identification of stage specific markers and culprits for tissue damage
Linker RA, Brechlin P, Jesse S, Steinacker P, Lee DH, Asif AR, Jahn O, Tumani H, Gold R, Otto M.
PLoS One (2009) 4(10): e7624
Proteomics of bacterial pathogens: Pseudomonas aeruginosa infections in cystic fibrosis - A case study
Nathan J. Hare, Stuart J. Cordwell
PROTEOMICS - CLINICAL APPLICATIONS (2010) 4(2): 228-248
Preliminary proteomic analysis of circulating polymorphonuclear neutrophils from rabbits experiencing scald injury and Staphylococcus aureus sepsis
Zhang PH, Li LL, Zeng JZ, Yang LR, Ren LC, Liang PF, Huang XY.
Inflamm Res Early Edition: published 30-Oct-2009
Optimization protocol for amyloid-? peptides detection in human cerebrospinal fluid using SELDI TOF MS
Valentina Albertini, Anna Bruno, Anna Paterlini, Simone Lista, Luisa Benussi, Cristina Cereda, Giuliano Binetti, Roberta Ghidoni
PROTEOMICS - CLINICAL APPLICATIONS (2010) 4(3): 352-357
Comparison of Normalization Methods for the Identification of Biomarkers Using MALDI-TOF and SELDI-TOF Mass Spectra
Borgaonkar SP, Hocker H, Shin H, Markey MK.
OMICS (2010) 14(1): 115-26
Lysophosphatidic acid receptor activation affects the C13NJ microglia cell line proteome leading to alterations in glycolysis, motility, and cytoskeletal architecture
Eva Bernhart, Manfred Kollroser, Gerald Rechberger, Helga Reicher, Akos Heinemann, Petra Schratl, Seth Hallström, Andrea Wintersperger, Christoph Nusshold, Trevor DeVaney, Klaus Zorn-Pauly, Roland Malli, Wolfgang Graier, Ernst Malle, Wolfgang Sattler
PROTEOMICS (2010) 10(1): 141-158
Bladder Cancer-associated Protein, a Potential Prognostic Biomarker in
Human Bladder Cancer
Mol Cell Proteomics (2010) 9(1): 161-177
Detection of lung adenocarcinoma using magnetic beads based matrix-assisted laser desorption/ionization time-of-flight mass spectrometry serum protein profiling
Lin XL, Yang SY, DU J, Tian YX, Bu LN, Huo SF, Wang FP, Nan YD.
Chin Med J (Engl) (2010) 123(1): 34-9
Is GRP78/BiP a potential salivary biomarker in patients with rheumatoid arthritis?
Laura Giusti, Chiara Baldini, Federica Ciregia, Gino Giannaccini, Camillo Giacomelli, Francesca De Feo, Andrea Delle Sedie, Lucrezia Riente, Antonio Lucacchini, Laura Bazzichi, Stefano Bombardieri
PROTEOMICS - CLINICAL APPLICATIONS (2010) 4(3): 315-324
Revisiting the Warburg effect in cancer cells with proteomics. The emergence of new approaches to diagnosis, prognosis and therapy
Roberto Scatena, Patrizia Bottoni, Alessandro Pontoglio, Bruno Giardina
PROTEOMICS - CLINICAL APPLICATIONS (2010) 4(2): 143-158
Proteomics, Pathway Array and Signaling Network-Based Medicine in Cancer
Zhang DY, Ye F, Gao L, Liu X, Zhao X, Che Y, Wang H, Wang L, Wu J, Song D, Liu W, Xu H, Jiang B, Zhang W, Wang J, Lee P.
Cell Div (2009) 4(1): 20
Coronin-1C is a novel biomarker for hepatocellular carcinoma invasive progression identified by proteomics analysis and clinical validation
Wu L, Peng CW, Hou JX, Zhang YH, Chen C, Chen LD, Li Y.
J Exp Clin Cancer Res (2010) 29(1): 17
Molecular Targets for Diabetes Mellitus-associated Erectile Dysfunction
Elizabeth Yohannes, Jinsook Chang, Moses T. Tar, Kelvin P. Davies, and Mark
Mol Cell Proteomics (2010) 9(3): 565-578
Discovery of biomarkers that reflect the intake of sodium selenate by nutritional proteomics
Mahn A, Muñoz MC, Zamorano MJ.
J Chromatogr Sci (2009) 47(9): 840-3
Proteomic study of activated Taenia solium oncospheres
Santivañez S, Hernández-González A, Chile N, Oleaga A, Arana Y, Palma S, Verastegui M, Gonzalez AE, Gilman R, Garcia HH, Siles-Lucas M.
Mol Biochem Parasitol Early Edition: published 5-Feb-2010
Tipifarnib Plus Tamoxifen in Tamoxifen-Resistant Metastatic Breast Cancer: A Negative Phase II and Screening of Potential Therapeutic Markers by Proteomic Analysis
Dalenc F, Doisneau-Sixou SF, Allal BC, Marsili S, Lauwers-Cances V, Chaoui K, Schiltz O, Monsarrat B, Filleron T, Renée N, Malissein E, Meunier E, Favre G, Roché H.
Clin Cancer Res (2010) 16(4): 1264-71
Analysis of the Liver Mitochondrial Proteome in Response to Ethanol and S-Adenosylmethionine Treatments: Novel Molecular Targets of Disease and Hepatoprotection
Andringa KK, King AL, Eccleston HB, Mantena SK, Landar A, Jhala NC, Dickinson DA, Squadrito GL, Bailey SM.
Am J Physiol Gastrointest Liver Physiol Early Edition: published 11-Feb-2010
Quantitative mass spectrometry of diabetic kidney tubules identifies GRAP as a novel regulator of TGFbeta signaling
Cummins TD, Barati MT, Coventry SC, Salyer SA, Klein JB, Powell DW.
Biochim Biophys Acta (2010) 1804(4): 653-661
Proteomic Analysis of Anti-inflammatory Effects of a Kampo (Japanese Herbal) Medicine 'Shoseiryuto (Xiao-Qing-Long-Tang)' on Airway Inflammation in a Mouse Model
Nagai T, Nakao M, Shimizu Y, Kodera Y, Oh-Ishi M, Maeda T, Yamada H.
Evid Based Complement Alternat Med Early Edition: published 27-Oct-2009
Degradative proteomics and disease mechanisms
Francesco Lanucara, Philip Brownridge, Iain S. Young, Phillip D. Whitfield, Mary K. Doherty
PROTEOMICS - CLINICAL APPLICATIONS (2010) 4(2): 133-142
Diagnostic protein marker patterns in squamous cervical cancer
Marta I. Lomnytska, Susanne Becker, Kristina Hellman, Ann-Cathrin Hellström, Serhiy Souchelnytskyi, Miriam Mints, Ulf Hellman, Sonia Andersson, Gert Auer
PROTEOMICS - CLINICAL APPLICATIONS (2010) 4(1): 17-31
The loss of phenol sulfotransferase 1 in hepatocellular carcinogenesis
Marie Yeo, Young Mi Na, Dong Kyu Kim, Young Bae Kim, Hee Jeong Wang, Jung A. Lee, Jae Youn Cheong, Kwang Jae Lee, Young-Ki Paik, Sung Won Cho
PROTEOMICS (2010) 10(2): 266-276
Reproducibility of Fifteen Urinary Estrogens and Estrogen Metabolites over a 2- to 3-Year Period in Premenopausal Women
Eliassen AH, Ziegler RG, Rosner B, Veenstra TD, Roman JM, Xu X, Hankinson SE.
Cancer Epidemiol Biomarkers Prev (2009) 18(11): 2860-8
Blood proteomics and transfusion safety
John R. Hess, Giuliano Grazzini
Journal of Proteomics (2010) 73(3): 365-367
Blood proteomics
Jean-Daniel Tissot
Journal of Proteomics (2010) 73(3): 466-467
Identification of Melanoma Antigens Using a Serological Proteome Approach (SERPA)
Suzuki A, Iizuka A, Komiyama M, Takikawa M, Kume A, Tai S, Ohshita C, Kurusu A, Nakamura Y, Yamamoto A, Yamazaki N, Yoshikawa S, Kiyohara Y, Akiyama Y.
Cancer Genomics Proteomics (2010) 7(1): 17-23
Identification of arginine- and lysine-methylation in the proteome of Saccharomyces cerevisiae and its functional implications
Pang CN, Gasteiger E, Wilkins MR.
BMC Genomics (2010) 11(1): 92
Immunoproteomics of the active degradome to identify biomarkers for Trichomonas vaginalis
Lucero A. Ramón-Luing, Francisco J. Rendón-Gandarilla, Rosa E. Cárdenas-Guerra, Norma A. Rodríguez-Cabrera, Jaime Ortega-López, Leticia Avila-González, Claudia Angel-Ortiz, Carmen N. Herrera-Sánchez, Manuela Mendoza-García, Rossana Arroyo
PROTEOMICS (2010) 10(3): 435-444
Proteomics Analysis of A33 Immunoaffinity-purified Exosomes Released from
the Human Colon Tumor Cell Line LIM1215 Reveals a Tissue-specific Protein
Mol Cell Proteomics (2010) 9(2): 197-208
Proteomics meets blood banking: Identification of protein targets for the improvement of platelet quality
Peter Schubert, Dana V. Devine
Journal of Proteomics (2010) 73(3): 436-444
Human duodenal proteome modulations by glutamine and antioxidants
Sandrine Thébault, Nicolas Deniel, Alexandra Galland, Stéphane Lecleire, Roland Charlionet, Moïse Coëffier, François Tron, David Vaudry, Pierre Déchelotte
PROTEOMICS - CLINICAL APPLICATIONS (2010) 4(3): 325-336
Alterations in the salivary proteome associated with periodontitis
Haigh BJ, Stewart KW, Whelan JR, Barnett MP, Smolenski GA, Wheeler TT.
J Clin Periodontol (2010) 37(3): 241-7
Different expression of Fibrinopeptide A and related fragments in serum of type 1 diabetic patients with nephropathy
E. Gianazza, V. Mainini, G. Castoldi, C. Chinello, G. Zerbini, C. Bianchi, C. Galbusera, A. Stella, G. Mauri, I. Zoppis, F. Magni, M. Galli Kienle
Journal of Proteomics (2010) 73(3): 593-601
Screening for therapeutic targets of vorinostat by SILAC-based proteomic analysis in human breast cancer cells
Qun Zhou, Raghothama Chaerkady, Patrick G. Shaw, Thomas W. Kensler, Akhilesh Pandey, Nancy E. Davidson
PROTEOMICS (2010) 10(5): 1029-1039
Towards a proteome signature for invasive ductal breast carcinoma derived from label-free nanoscale LC-MS protein expression profiling of tumorous and glandular tissue
Röwer C, Vissers JP, Koy C, Kipping M, Hecker M, Reimer T, Gerber B, Thiesen HJ, Glocker MO.
Anal Bioanal Chem (2009) 395(8): 2443-56
Proteomics in chronic wound research: Potentials in healing and health
James Broadbent, Terry Walsh, Zee Upton
PROTEOMICS - CLINICAL APPLICATIONS (2010) 4(2): 204-214
Immunoproteomic Identification of Human T Cell Antigens of Mycobacterium
tuberculosis That Differentiate Healthy Contacts from Tuberculosis Patients
Mol Cell Proteomics (2010) 9(3): 538-549
Proteomic Analysis Uncovers Novel Actions of the Neurosecretory Protein VGF in Nociceptive Processing
Riedl MS, Braun PD, Kitto KF, Roiko SA, Anderson LB, Honda CN, Fairbanks CA, Vulchanova L.
J Neurosci (2009) 29(42): 13377-88
Proteomic studies on receptor for advanced glycation end product variants in idiopathic pulmonary fibrosis and chronic obstructive pulmonary disease
Steffen Ohlmeier, Witold Mazur, Kaisa Salmenkivi, Marjukka Myllärniemi, Ulrich Bergmann, Vuokko L. Kinnula
PROTEOMICS - CLINICAL APPLICATIONS (2010) 4(1): 97-105
Understanding dendritic cell biology and its role in immunological disorders through proteomic profiling
Gabriela Bomfim Ferreira, Chantal Mathieu, Lut Overbergh
PROTEOMICS - CLINICAL APPLICATIONS (2010) 4(2): 190-203
Ubiquitin as potential cerebrospinal fluid marker of Creutzfeldt-Jakob disease
Petra Steinacker, Wolfgang Rist, Magdalena Swiatek-de-Lange, Stefan Lehnert, Sarah Jesse, Alice Pabst, Hayrettin Tumani, Christine A. F. von Arnim, Eva Mitrova, Hans A. Kretzschmar, Martin Lenter, Jens Wiltfang, Markus Otto
PROTEOMICS (2010) 10(1): 81-89
Achievements and future of nutritional cancer epidemiology
Miller AB, Linseisen J.
Int J Cancer (2010) 126(7): 1531-7
Proteomic analysis of lymphoid and haematopoietic neoplasms: There's more than biomarker discovery
Alberto Zamo, Daniela Cecconi
Journal of Proteomics (2010) 73(3): 508-520
Identification of proteins differentially expressed between capillary endothelial cells of hepatocellular carcinoma and normal liver in an orthotopic rat tumor model using 2-D DIGE
Jinghui Jia, Jingyu Wang, Ming Teh, Wei Sun, Jianhua Zhang, Irene Kee, Pierce K.-H. Chow, Rosa Cynthia M.-Y. Liang, Maxey C. M. Chung, Ruowen Ge
PROTEOMICS (2010) 10(2): 224-234
Identification of Pancreas-Specific Proteins in Endoscopically (Endoscopic Pancreatic Function Test) Collected Pancreatic Fluid with Liquid Chromatography- Tandem Mass Spectrometry
Paulo JA, Lee LS, Wu B, Repas K, Mortele KJ, Banks PA, Steen H, Conwell DL.
Pancreas Early Edition: published 22-Feb-2010
Immunoscreening of the extracellular proteome of colorectal cancer cells
Klein-Scory S, Kubler S, Diehl H, Eilert-Micus C, Reinacher-Schick A, Stuhler K, Warscheid B, Meyer HE, Schmiegel W, Schwarte-Waldhoff I.
BMC Cancer (2010) 10(1): 70
Proteomics of bacterial pathogenicity: Therapeutic implications
Henry J. Windle, Paul A. Brown, Dermot P. Kelleher
PROTEOMICS - CLINICAL APPLICATIONS (2010) 4(2): 215-227
Micro-Heterogeneity of Human Saliva Peptide P-C Characterized by High-Resolution Top-Down Fourier-Transform Mass Spectrometry
Halgand F, Zabrouskov V, Bassilian S, Souda P, Wong DT, Loo JA, Faull KF, Whitelegge JP.
J Am Soc Mass Spectrom Early Edition: published 1-Feb-2010
Proteomic Analysis of Host Responses to Marek's Disease Virus Infection in Spleens of Genetically Resistant and Susceptible Chickens
Thanthrige-Don N, Parvizi P, Sarson AJ, Shack LA, Burgess SC, Sharif S.
Dev Comp Immunol Early Edition: published 2-Feb-2010
Quantitative proteomic analysis of single pancreatic islets
Waanders LF, Chwalek K, Monetti M, Kumar C, Lammert E, Mann M.
Proc Natl Acad Sci U S A (2009) 106(45): 18902-7
Use of proteomics for validation of the isolation process of clotting factor IX from human plasma
James Clifton, Feilei Huang, Dajana Gaso-Sokac, Kate Brilliant, Douglas Hixson, Djuro Josic
Journal of Proteomics (2010) 73(3): 678-688
Identification of distinctive protein expression patterns in colorectal adenoma
Francis F. Lam, Lucy Jankova, Owen F. Dent, Mark P. Molloy, Sun Young Kwun, Candice Clarke, Pierre Chapuis, Graham Robertson, Philip Beale, Stephen Clarke, E. Les Bokey, Charles Chan
PROTEOMICS - CLINICAL APPLICATIONS (2010) 4(1): 60-70
Multiplex assays for biomarker research and clinical application: Translational science coming of age
Qin Fu, Florian S. Schoenhoff, William J. Savage, Pingbo Zhang, Jennifer E. Van Eyk
PROTEOMICS - CLINICAL APPLICATIONS (2010) 4(3): 271-284
Glycoproteomics and clinical applications
Yuan Tian, Hui Zhang
PROTEOMICS - CLINICAL APPLICATIONS (2010) 4(2): 124-132
Red cell storage
John R. Hess
Journal of Proteomics (2010) 73(3): 368-373
Emerging applications of fluorescent nanocrystals quantum dots for micrometastases detection
Wael Mahmoud, Alyona Sukhanova, Vladimir Oleinikov, Yury P. Rakovich, John F. Donegan, Michel Pluot, Jacques H. M. Cohen, Yuri Volkov, Igor Nabiev
PROTEOMICS (2010) 10(4): 700-716
Comparison of proteomic biomarker panels in urine and serum for ovarian cancer diagnosis
Anette Lykke Petri, Anja Hviid Simonsen, Estrid Høgdall, Ib Jarle Christensen, Susanne Krüger Kjaer, Christine Yip, Signe Risum, Anette Tønnes Pedersen, Dorte Hartwell, Eric T. Fung, Claus Høgdall
PROTEOMICS - CLINICAL APPLICATIONS (2010) 4(3): 304-314
Sex and ethnic differences in 47 candidate proteomic markers of cardiovascular disease: the mayo clinic proteomic markers of arteriosclerosis study
Kim CX, Bailey KR, Klee GG, Ellington AA, Liu G, Mosley TH, Rehman H, Kullo IJ.
PLoS One (2010) 5(2): e9065
Biomarkers of neurological status in HIV infection: A 3-year study
Ann B. Ragin, Ying Wu, Renee Ochs, Rachel Scheidegger, Bruce A. Cohen, Robert R. Edelman, Leon G. Epstein, Justin McArthur
PROTEOMICS - CLINICAL APPLICATIONS (2010) 4(3): 295-303
Galectin-3-binding protein: a serological and histological assessment in accordance with hepatitis C-related liver fibrosis
Cheung KJ, Libbrecht L, Tilleman K, Deforce D, Colle I, Van Vlierberghe H.
Eur J Gastroenterol Hepatol Early Edition: published 24-Feb-2010
Protein biomarkers for radiation exposure: towards a proteomic approach as a new investigation tool
Guipaud O, Benderitter M.
Ann Ist Super Sanita (2009) 45(3): 278-86
iTRAQ-based proteomic identification of leucine rich alpha 2 glycoprotein (LRG) as a novel inflammatory biomarker in autoimmune diseases
Serada S, Fujimoto M, Ogata A, Terabe F, Hirano T, Iijima H, Shinzaki S, Nishikawa T, Ohkawara T, Iwahori K, Ohguro N, Kishimoto T, Naka T.
Ann Rheum Dis Early Edition: published 22-Oct-2009
Hydrodynamic and mass spectrometry analysis of nearly-intact human fibrinogen, chicken fibrinogen, and of a substantially monodisperse human fibrinogen fragment X
Cardinali B, Profumo A, Aprile A, Byron O, Morris G, Harding SE, Stafford WF, Rocco M.
Arch Biochem Biophys (2010) 493(2): 157-68
Proteomic analysis of novel Cry1Ac binding proteins in Helicoverpa armigera (Hübner)
Chen LZ, Liang GM, Zhang J, Wu KM, Guo YY, Rector BG.
Arch Insect Biochem Physiol (2010) 73(2): 61-73
Cancer-specific MALDI-TOF profiles of blood serum and plasma: Biological meaning and perspectives
M.A. Karpova, S.A. Moshkovskii, I.Y. Toropygin, A.I. Archakov
Journal of Proteomics (2010) 73(3): 537-551
Functional proteomic and structural insights into molecular targets related to the growth inhibitory effect of tanshinone IIA on HeLa cells
Tai-Long Pan, Yu-Chiang Hung, Pei-Wen Wang, Shui-Ten Chen, Teng-Kuei Hsu, Nardnisa Sintupisut, Chao-Sheng Cheng, Ping-Chiang Lyu
PROTEOMICS (2010) 10(5): 914-929
International blood collection and storage: Clinical use of blood products
David W. Greening, Kristen M. Glenister, Rosemary L. Sparrow, Richard J. Simpson
Journal of Proteomics (2010) 73(3): 386-395
Cancer antineovascular therapy with liposome drug delivery systems targeted to BiP/GRP78
Katanasaka Y, Ishii T, Asai T, Naitou H, Maeda N, Koizumi F, Miyagawa S, Ohashi N, Oku N.
Int J Cancer Early Edition: published 22-Feb-2010
2D-DIGE proteomic characterization of head and neck squamous cell carcinoma
Merkley MA, Weinberger PM, Jackson LL, Podolsky RH, Lee JR, Dynan WS.
Otolaryngol Head Neck Surg (2009) 141(5): 626-32
Urinary exosomes
Dimov I, Jankovic Velickovic L, Stefanovic V.
ScientificWorldJournal (2009) 9: 1107-18.
Quantitative Proteomic Profiling of Prostate Cancer Reveals a Role for
miR-128 in Prostate Cancer
Mol Cell Proteomics (2010) 9(2): 298-312
Identification of complement C3f-desArg and its derivative for acute leukemia diagnosis and minimal residual disease assessment
Tingting Liang, Na Wang, Wei Li, Ailing Li, Jie Wang, Jiuwei Cui, Nian Liu, Yan Li, Ling Li, Guozi Yang, ZhongHua Du, Dan Li, Kun He, Guanjun Wang
PROTEOMICS (2010) 10(1): 90-98
Preliminary proteomic analysis of circulating polymorphonuclear neutrophils from rabbits experiencing scald injury and Staphylococcus aureus sepsis
Zhang PH, Li LL, Zeng JZ, Yang LR, Ren LC, Liang PF, Huang XY.
Inflamm Res Early Edition: published 30-Oct-2009
Interferon-stimulated gene 15 (ISG15) conjugates proteins in dermatomyositis muscle with perifascicular atrophy
Salajegheh M, Kong SW, Pinkus JL, Walsh RJ, Liao A, Nazareno R, Amato AA, Krastins B, Morehouse C, Higgs BW, Jallal B, Yao Y, Sarracino DA, Parker KC, Greenberg SA.
Ann Neurol (2009) 67(1): 53-63
Changes in the proteomes of the hemocytes and fat bodies of the flesh fly Sarcophaga bullata larvae after infection by Escherichia coli
Masova A, Sanda M, Jiracek J, Selicharova I.
Proteome Science (2010) 8: 1.
Identification of the chitin binding proteins from the larval proteins of silkworm, Bombyx mori
Tang L, Liang J, Zhan Z, Xiang Z, He N.
Insect Biochem Mol Biol Early Edition: published 8-Feb-2010
Physiological and proteomic approaches to address heat tolerance during anthesis in rice (Oryza sativa L.)
Jagadish SV, Muthurajan R, Oane R, Wheeler TR, Heuer S, Bennett J, Craufurd PQ.
J Exp Bot (2010) 61(1): 143-56
Differential expression of proteins in fetal brains of alcohol-treated prenatally C57BL/6 mice: A proteomic investigation
Youssef Sari, Min Zhang, Yehia Mechref
ELECTROPHORESIS (2010) 31(3): 483-496
Proteomic analysis of V-ATPase-rich cells harvested from the kidney and epididymis by fluorescence activated cell sorting
Da Silva N, Pisitkun T, Belleannée C, Miller LR, Nelson RD, Knepper MA, Brown D, Breton S.
Am J Physiol Cell Physiol Early Edition: published 24-Feb-2010
Comparison of different depletion strategies for improving resolution of the human urine proteome
Magagnotti C, Fermo I, Carletti RM, Ferrari M, Bachi A.
Clin Chem Lab Med Early Edition: published 12-Feb-2010
Proteomic Identification of Binding Partners for the Brain Metabolite Lanthionine Ketimine (LK) and Documentation of LK Effects on Microglia and Motoneuron Cell Cultures
Hensley K, Christov A, Kamat S, Zhang XC, Jackson KW, Snow S, Post J.
J Neurosci (2010) 30(8): 2979-88
Proteomics analysis of liver samples from puffer fish Takifugu rubripes exposed to excessive fluoride: An insight into molecular response to fluorosis
Lu J, Zheng J, Liu H, Li J, Xu Q, Chen K.
J Biochem Mol Toxicol (2010) 24(1): 21-8
Proteomic analysis of symbiosome membranes in Cnidaria-dinoflagellate endosymbiosis
Shao-En Peng, Yu-Bao Wang, Li-Hsueh Wang, Wan-Nan Uang Chen, Chi-Yu Lu, Lee-Shing Fang, Chii-Shiarng Chen
PROTEOMICS (2010) 10(5): 1002-1016
SiO2 nanoparticles induce cytotoxicity and protein expression alteration in HaCaT cells
Yang X, Liu J, He H, Zhou L, Gong C, Wang X, Yang L, Yuan J, Huang H, He L, Zhang B, Zhuang Z.
Part Fibre Toxicol (2010) 7(1): 1
A comparative proteomics approach to detect unintended effects in transgenic Arabidopsis
Ren Y, Lv J, Wang H, Li L, Peng Y, Qu LJ.
J Genet Genomics (2009) 36(10): 629-39
Thioredoxin targets of the plant chloroplast lumen and their implications for plastid function
Michael Hall, Alejandro Mata-Cabana, Hans-Erik Åkerlund, Francisco J. Florencio, Wolfgang P. Schröder, Marika Lindahl, Thomas Kieselbach
PROTEOMICS (2010) 10(5): 987-1001
Proteomic analysis of temperature stress in plants
Karlie A. Neilson, C. Gayani Gammulla, Mehdi Mirzaei, Nijat Imin, Paul A. Haynes
PROTEOMICS (2010) 10(4): 828-845
Alterations in the salivary proteome associated with periodontitis
Haigh BJ, Stewart KW, Whelan JR, Barnett MP, Smolenski GA, Wheeler TT.
J Clin Periodontol (2010) 37(3): 241-7
Tear proteomics in evaporative dry eye disease
Versura P, Nanni P, Bavelloni A, Blalock WL, Piazzi M, Roda A, Campos EC.
Eye (Lond) Early Edition: published 12-Feb-2010
Quantitative Proteomics Reveals Subset-Specific Viral Recognition in Dendritic Cells
Luber CA, Cox J, Lauterbach H, Fancke B, Selbach M, Tschopp J, Akira S, Wiegand M, Hochrein H, O'Keeffe M, Mann M.
Immunity (2010) 32(2): 279-289