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%T Gaining knowledge from previously unexplained spectra-application of the PTM-Explorer software to detect PTM in HUPO BPP MS/MS data
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%T Quantification of change in phosphorylation of BCR-ABL kinase and its substrates in response to Imatinib treatment in human chronic myelogenous leukemia cells
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%T Evaluation of 2-DE protein patterns from pre- and postnatal stages of the mouse brain
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%T Two-Dimensional Microcolumn Separation Platform for Proteomics Consisting of On-Line Coupled Capillary Isoelectric Focusing and Capillary Electrochromatography. 1. Evaluation of the Capillary-Based Two-Dimensional Platform with Proteins, Peptides, and Hum
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%T The number of genes changing expression after chronic exposure to Code Division Multiple Access or Frequency DMA radiofrequency radiation does not exceed the false-positive rate
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%T Alterations in the Mitochondrial Proteome of Adriamycin Resistant MCF-7 Breast Cancer Cells
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%T Proteins Associated with Disease and Clinical Course in Pancreas Cancer: A Proteomic Analysis of Plasma in Surgical Patients
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%A Rowan Orme
%A C. W. Ian Douglas
%A Stephen Rimmer
%A Michelle Webb
%T Proteomic analysis of Escherichia coli biofilms reveals the overexpression of the outer membrane protein OmpA
%0 Journal Article
%D 2006
%J PROTEOMICS
%P 4269-4277
%V 6
%N 15
%U http://dx.doi.org/10.1002/pmic.200600193
%A Petra Kapkov
%A Erika Lattov
%A Hélène Perreault
%T Nonretentive Solid-Phase Extraction of Phosphorylated Peptides from Complex Peptide Mixtures for Detection by Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry
%0 Journal Article
%D 2006
%J ANALYTICAL CHEMISTRY
%P 7027-7033
%V 78
%N 19
%U http://dx.doi.org/10.1021/ac060485v
%A Jikun Liu
%A Milton L. Lee
%T Permanent surface modification of polymeric capillary electrophoresis microchips for protein and peptide analysis
%0 Journal Article
%D 2006
%J ELECTROPHORESIS
%P 3533-3546
%V 27
%N 18
%U http://dx.doi.org/10.1002/elps.200600082
%A Lennart Martens
%A Michael Müller
%A Christian Stephan
%A Michael Hamacher
%A Kai A. Reidegeld
%A Helmut E. Meyer
%A Martin Blüggel
%A Joël Vandekerckhove
%A Kris Gevaert
%A Rolf Apweiler
%T A comparison of the HUPO Brain Proteome Project pilot with other proteomics studies
%0 Journal Article
%D 2006
%J PROTEOMICS
%P 5076-5086
%V 6
%N 18
%U http://dx.doi.org/10.1002/pmic.200600291
%A Li D
%A Gao W
%A Ling CX
%A Wang X
%A Sun R
%A He S
%T IndexToolkit: an open source toolbox to index protein databases for high-throughput proteomics
%0 Journal Article
%D 2006
%J Bioinformatics
%P 2572-3
%V 22
%N 20
%U http://dx.doi.org/10.1093/bioinformatics/btl410
%A Xie X
%A Xu L
%A Yang F
%T Proteomic analysis of the major envelope and nucleocapsid proteins of white spot syndrome virus (WSSV)
%0 Journal Article
%D 2006
%J J Virol
%P 10615-23
%V 80
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%U http://dx.doi.org/10.1128/JVI.01452-06
%A Pruess M
%A Kersey P
%A Kulikova T
%A Apweiler R
%T Databases and resources for in silico proteome analysis
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%J Methods Biochem Anal
%P 397-414
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%A Derek J. Hoelz
%A Randy J. Arnold
%A Lacey E. Dobrolecki
%A Waleed Abdel-Aziz
%A Andrew P. Loehrer
%A Milos V. Novotny
%A Lauren Schnaper
%A Robert J. Hickey
%A Linda H. Malkas
%T The discovery of labile methyl esters on proliferating cell nuclear antigen by MS/MS
%0 Journal Article
%D 2006
%J PROTEOMICS
%P 4808-4816
%V 6
%N 17
%U http://dx.doi.org/10.1002/pmic.200600142
%A Katie Cottingham
%T Proteomics Projects: HUPO HLPP takes on a herculean task
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%A Dariusz Leszczynski
%T The need for a new approach in studies of the biological effects of electromagnetic fields
%0 Journal Article
%D 2006
%J PROTEOMICS
%P 4671-4673
%V 6
%N 17
%U http://dx.doi.org/10.1002/pmic.200690099
%A Chiao-Yun Lin
%A Ke-Hung Tsui
%A Chih-Chia Yu
%A Chun-Wei Yeh
%A Phei-Lang Chang
%A Benjamin Yat-Ming Yung
%T Searching cell-secreted proteomes for potential urinary bladder tumor markers
%0 Journal Article
%D 2006
%J PROTEOMICS
%P 4381-4389
%V 6
%N 15
%U http://dx.doi.org/10.1002/pmic.200600066
%A Harsha P. Gunawardena
%A Richard A. J. O'Hair
%A Scott A. McLuckey
%T Selective Disulfide Bond Cleavage in Gold(I) Cationized Polypeptide Ions Formed via Gas-Phase Ion/Ion Cation Switching
%0 Journal Article
%D 2006
%J JOURNAL OF PROTEOME RESEARCH
%P 2087-2092
%V 5
%N 9
%U http://dx.doi.org/10.1021/pr0602794
%A Barbara E. Frewen
%A Gennifer E. Merrihew
%A Christine C. Wu
%A William Stafford Noble
%A Michael J. MacCoss
%T Analysis of Peptide MS/MS Spectra from Large-Scale Proteomics Experiments Using Spectrum Libraries
%0 Journal Article
%D 2006
%J ANALYTICAL CHEMISTRY
%P 5678-5684
%V 78
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%U http://dx.doi.org/10.1021/ac060279n
%A Xiaoxi Chen
%A Anthony Murawski
%A Guannan Kuang
%A Daniel J. Sexton
%A William Galbraith
%T Sample Preparation for MALDI Mass Spectrometry Using an Elastomeric Device Reversibly Sealed on the MALDI Target
%0 Journal Article
%D 2006
%J ANALYTICAL CHEMISTRY
%P 6160-6168
%V 78
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%U http://dx.doi.org/10.1021/ac060286b
%A Vesna Katavic
%A Ganesh Kumar Agrawal
%A Martin Hajduch
%A Stefan L. Harris
%A Jay J. Thelen
%T Protein and lipid composition analysis of oil bodies from two Brassica napus cultivars
%0 Journal Article
%D 2006
%J PROTEOMICS
%P 4586-4598
%V 6
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%U http://dx.doi.org/10.1002/pmic.200600020
%A Wasinger V
%T Holistic biology of microorganisms: genomics, transcriptomics, and proteomics
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%J Methods Biochem Anal
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%A Corina Mayrhofer
%A Sigurd Krieger
%A Emmanuel Raptakis
%A Günter Allmaier
%T Comparison of Vacuum Matrix-Assisted Laser Desorption/Ionization (MALDI) and Atmospheric Pressure MALDI (AP-MALDI) Tandem Mass Spectrometry of 2-Dimensional Separated and Trypsin-Digested Glomerular Proteins for Database Search Derived Identification
%0 Journal Article
%D 2006
%J JOURNAL OF PROTEOME RESEARCH
%P 1967-1978
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%U http://dx.doi.org/10.1021/pr060165s
%A Jeffrey J. Wilson and Jennifer S. Brodbelt
%T Infrared Multiphoton Dissociation for Enhanced de Novo Sequence Interpretation of N-Terminal Sulfonated Peptides in a Quadrupole Ion Trap
%0 Journal Article
%D 2006
%J ANALYTICAL CHEMISTRY
%P 6855-6862
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%U http://dx.doi.org/10.1021/ac060760d
%A Jiaqi Wu
%A Tiemin Huang
%T Peak identification in capillary isoelectric focusing using the concept of relative peak position as determined by two isoelectric point markers
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%J ELECTROPHORESIS
%P 3584-3590
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%A Pitarch A
%A Nombela C
%A Gil C
%T Candida albicans biology and pathogenicity: insights from proteomics
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%J Methods Biochem Anal
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%A Jin Hong
%A Ren Miao
%A Chunmei Zhao
%A Jiang Jiang
%A Huiwei Tang
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%A Longgen Zhu
%T Mass spectrometry assisted assignments of binding and cleavage sites of copper(II) and platinum(II) complexes towards oxidized insulin B chain
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%J Journal of Mass Spectrometry
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%A Eli Song
%A Shijuan Gao
%A Rui Tian
%A Sucan Ma
%A Haiming Huang
%A Jiayan Guo
%A Yingna Li
%A Ling Zhang
%A Youhe Gao
%T A High Efficiency Strategy for Binding Property Characterization of Peptide-binding Domains
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%J Mol Cell Proteomics
%P 1368-1381
%V 5
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%A Sébastien Vilain and Volker S. Brözel
%T Multivariate Approach to Comparing Whole-Cell Proteomes of Bacillus cereus Indicates a Biofilm-Specific Proteome
%0 Journal Article
%D 2006
%J JOURNAL OF PROTEOME RESEARCH
%P 1924-1930
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%U http://dx.doi.org/10.1021/pr050402b
%A Houjiang Zhou
%A Songyun Xu
%A Mingliang Ye
%A Shun Feng
%A Chensong Pan
%A Xiaogang Jiang
%A Xin Li
%A Guanghui Han
%A Yu Fu
%A Hanfa Zou
%T Zirconium Phosphonate-Modified Porous Silicon for Highly Specific Capture of Phosphopeptides and MALDI-TOF MS Analysis
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%J JOURNAL OF PROTEOME RESEARCH
%P 2431-2437
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%U http://dx.doi.org/10.1021/pr060162f
%A Mei Huang
%A Tong Chen
%A ZhuLong Chan
%T An evaluation for cross-species proteomics research by publicly available expressed sequence tag database search using tandem mass spectral data
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%J Rapid Communications in Mass Spectrometry
%P 2635-2640
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%U http://dx.doi.org/10.1002/rcm.2631
%A Rose P. Webster
%A Stephen Macha
%A Diane Brockman
%A Leslie Myatt
%T Peroxynitrite treatment in vitro disables catalytic activity of recombinant p38 MAPK
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%D 2006
%J PROTEOMICS
%P 4838-4844
%V 6
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%U http://dx.doi.org/10.1002/pmic.200600176
%A Aniel Sánchez
%A Luis Javier González López
%A Lázaro Betancourt
%A Jeovanis Gil
%A Vladimir Besada
%A Jorge Fernández-de-Cossío
%A Arielis Rodríguez-Ulloa
%A Karen Marrero
%A Félix Alvarez
%A Rafael Fando
%A Gabriel Padrón
%T Selective isolation of multiple positively charged peptides for 2-DE-free quantitative proteomics
%0 Journal Article
%D 2006
%J PROTEOMICS
%P 4444-4455
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%U http://dx.doi.org/10.1002/pmic.200500836
%A Kai A. Reidegeld
%A Michael Müller
%A Christian Stephan
%A Martin Blüggel
%A Michael Hamacher
%A Lennart Martens
%A Gerhard Körting
%A Daniel C. Chamrad
%A David Parkinson
%A Rolf Apweiler
%A Helmut E. Meyer
%A Katrin Marcus
%T The power of cooperative investigation: Summary and comparison of the HUPO Brain Proteome Project pilot study results
%0 Journal Article
%D 2006
%J PROTEOMICS
%P 4997-5014
%V 6
%N 18
%U http://dx.doi.org/10.1002/pmic.200600305
%A Jan Seebacher
%A Parag Mallick
%A Ning Zhang
%A James S. Eddes
%A Ruedi Aebersold
%A Michael H. Gelb
%T Protein Cross-Linking Analysis Using Mass Spectrometry, Isotope-Coded Cross-Linkers, and Integrated Computational Data Processing
%0 Journal Article
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%J JOURNAL OF PROTEOME RESEARCH
%P 2270-2282
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%U http://dx.doi.org/10.1021/pr060154z
%A Alexis A. Ramos
%A Hua Yang
%A Lauren E. Rosen
%A Xudong Yao
%T Tandem Parallel Fragmentation of Peptides for Mass Spectrometry
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%J ANALYTICAL CHEMISTRY
%P 6391-6397
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%U http://dx.doi.org/10.1021/ac060672t
%T TOOLbox: PROMPT for comparisons | msInspect | Rapid peptide identifications | MeMo for metabolomics data
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%J JOURNAL OF PROTEOME RESEARCH
%P 2072-2073
%V 5
%N 9
%U http://pubs.acs.org/subscribe/journals/jprobs/5/i09/html/0906toolbox.html
%A Britta Förster
%A Ulrike Mathesius
%A Barry J. Pogson
%T Comparative proteomics of high light stress in the model alga Chlamydomonas reinhardtii
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%J PROTEOMICS
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%U http://dx.doi.org/10.1002/pmic.200500907
%A Kang D
%A Moon MH
%T Development of non-gel-based two-dimensional separation of intact proteins by an on-line hyphenation of capillary isoelectric focusing and hollow fiber flow field-flow fractionation
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%J Anal Chem
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%A Mones Abu-Asab
%A Mohamed Chaouchi
%A Hakima Amri
%T Phyloproteomics: What Phylogenetic Analysis Reveals about Serum Proteomics
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%J JOURNAL OF PROTEOME RESEARCH
%P 2236-2240
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%U http://dx.doi.org/10.1021/pr0504485
%A Katie Cottingham
%T Research Profile: A unique biofilm proteome
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%A Ming Zhou
%A DaRue A. Prieto
%A David A. Lucas
%A King C. Chan
%A Haleem J. Issaq
%A Timothy D. Veenstra
%A Thomas P. Conrads
%T Identification of the SELDI ProteinChip Human Serum Retentate by Microcapillary Liquid Chromatography-Tandem Mass Spectrometry
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%J JOURNAL OF PROTEOME RESEARCH
%P 2207-2216
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%U http://dx.doi.org/10.1021/pr060061h
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%A Xia Q
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%T Mass Spectrometry-Based Proteomics and its Application to Studies of Porphyromonas gingivalis Invasion and Pathogenicity
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%J Infect Disord Drug Targets
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%T Generalized modeling of enzyme-ligand interactions using proteochemometrics and local protein substructures
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%J Proteins
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%A Grace O'Maille
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%A Thomas P. Conrads
%A Anders Nordstrom
%A Sunia A. Trauger
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%A David A. Lucas
%A King C. Chan
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%A Anette Sch
%T Mass Spectrometry Reveals Specific and Global Molecular Transformations during Viral Infection
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%A Donna J. Webb
%A Mykola Kovalenko
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%T Identification of Protein Networks Associated with the PAK1-PIX-GIT1-Paxillin Signaling Complex by Mass Spectrometry
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%P 2417-2423
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%U http://dx.doi.org/10.1021/pr060140t
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%A Heather M. Mottaz
%A Angela D. Norbeck
%A Jean K. Gustin
%A Joanne Rue
%A Therese R. W. Clauss
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%A Richard D. Smith
%T Analysis of the Salmonella typhimurium Proteome through Environmental Response toward Infectious Conditions
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%J Mol Cell Proteomics
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%A Andrzej K. Drukier
%A Nathasha Ossetrova
%A Elena Schors
%A Galya Krasik
%A Ivan Grigoriev
%A Christina Koenig
%A Miko Sulkowski
%A Jerzy Holcman
%A Larry R. Brown
%A John E. Tomaszewski
%A Mitchell D. Schnall
%A Richard Sainsbury
%A Anne E. Lokshin
%A Jasminka Godovac-Zimmerm
%T High-Sensitivity Blood-Based Detection of Breast Cancer by Multi Photon Detection Diagnostic Proteomics
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%T Targeted glycoproteomics: Serial lectin affinity chromatography in the selection of O-glycosylation sites on proteins from the human blood proteome
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%T Peptidomics for Cancer Diagnosis: Present and Future
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%A Stephen J. Langer
%A Kirsi Polvinen
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%T Functional Proteomics Identifies Protein-tyrosine Phosphatase 1B as a Target of RhoA Signaling
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%J Mol Cell Proteomics
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%A Barbara Amann
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%A Ursula Olazabal
%A Hartmut Gerhards
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%T Identification and Functional Validation of Novel Autoantigens in Equine Uveitis
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%J Mol Cell Proteomics
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%T The Evolution from Protein Chemistry to Proteomics. By Roger L. Lundblad
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%A Jana Alonso and Juan F. Santarén
%T Characterization of The Drosophila melanogaster Ribosomal Proteome
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%P 2025-2032
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%U http://dx.doi.org/10.1021/pr0601483
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%A José Barbosa
%A Victoria Sanz-Nebot
%T Separation and characterization of rabbit liver apothioneins by capillary electrophoresis coupled to electrospray ionization time-of-flight mass spectrometry
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%T Proteome Comparison Following Self- and Across-Pollination in Self-Incompatible Apricot (Prunus armeniaca L.)
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%J Protein J
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%T TOOLbox: AID-MS for complex high-resolution spectra | BIGCAT | MET-IDEA | Correlation of 2DE gels
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%D 2006
%J JOURNAL OF PROTEOME RESEARCH
%P 1822-1823
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%A J. Douglas Armstrong
%A Andrew J. Pocklington
%A Mark A. Cumiskey
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%T Reconstructing protein complexes: From proteomics to systems biology
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%J PROTEOMICS
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%U http://dx.doi.org/10.1002/pmic.200500895
%A Dobrin Nedelkov
%A Kemmons A. Tubbs
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%T Surface plasmon resonance-enabled mass spectrometry arrays
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%J ELECTROPHORESIS
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%A Julie L. Morrison
%A Rainer Breitling
%A Desmond J. Higham
%A David R. Gilbert
%T A lock-and-key model for protein-protein interactions
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%J Bioinformatics
%P 2012-2019
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%A Odile Carrette
%A Pierre R. Burkhard
%A Denis F. Hochstrasser
%A Jean-Charles Sanchez
%T Age-related proteome analysis of the mouse brain: a 2-DE study
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%D 2006
%J PROTEOMICS
%P 4940-4949
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%U http://dx.doi.org/10.1002/pmic.200600084
%A Mobarak C
%T A Review of: "Industrial Proteomics, Applications for Biotechnology and Pharmaceuticals"
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%A Wei-Neng Hung
%A Yi-Hwa Yian
%A Kun-Pin Wu
%A Chia-Li Han
%A Yet-Ran Chen
%A Yu-Ju Chen
%A Ting-Yi Sung
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%T Multi-Q: A Fully Automated Tool for Multiplexed Protein Quantitation
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%J JOURNAL OF PROTEOME RESEARCH
%P 2328-2338
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%U http://dx.doi.org/10.1021/pr060132c
%A Carolina Johansson
%A Jenny Samskog
%A Lars Sundström
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%A Lennart Björkesten
%A John Flensburg
%T Differential expression analysis of Escherichia coli proteins using a novel software for relative quantitation of LC-MS/MS data
%0 Journal Article
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%J PROTEOMICS
%P 4475-4485
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%U http://dx.doi.org/10.1002/pmic.200500921
%A Neil F. W. Saunders
%A Charmaine Ng
%A Mark Raftery
%A Michael Guilhaus
%A Amber Goodchild
%A Ricardo Cavicchioli
%T Proteomic and Computational Analysis of Secreted Proteins with Type I Signal Peptides from the Antarctic Archaeon Methanococcoides burtonii
%0 Journal Article
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%J JOURNAL OF PROTEOME RESEARCH
%P 2457-2464
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%U http://dx.doi.org/10.1021/pr060220x
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%A Cuccurullo M
%A Schlosser G
%A Cacace G
%A Siciliano RA
%A Mazzeo MF
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%T Shotgun proteomics for the characterization of subunit composition of mitochondrial complex I
%0 Journal Article
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%J Biochim Biophys Acta
%P 1438-50
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%T Analyzing bacterial pathogenesis at level of proteome
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%J Methods Biochem Anal
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%V 49
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%A Huiling Liu
%A Yangjun Zhang
%A Jinglan Wang
%A Dong Wang
%A Chunxi Zhou
%A Yun Cai
%A Xiaohong Qian
%T Method for Quantitative Proteomics Research by Using Metal Element Chelated Tags Coupled with Mass Spectrometry
%0 Journal Article
%D 2006
%J ANALYTICAL CHEMISTRY
%P 6614-6621
%V 78
%N 18
%U http://dx.doi.org/10.1021/ac060895j
%A Hsieh WY
%A Chen MW
%A Ho HT
%A You TM
%A Lu YT
%T Identification of differentially expressed proteins in human malignant pleural effusions
%0 Journal Article
%D 2006
%J Eur Respir J
%P 1178-85
%V 28
%N 6
%U http://dx.doi.org/10.1183/09031936.06.00135405
%A Rembert Pieper
%A Christine L. Gatlin-Bunai
%A Emmanuel F. Mongodin
%A Prashanth P. Parmar
%A Shih-Ting Huang
%A David J. Clark
%A Robert D. Fleischmann
%A Steven R. Gill
%A Scott N. Peterson
%T Comparative proteomic analysis of Staphylococcus aureus strains with differences in resistance to the cell wall-targeting antibiotic vancomycin
%0 Journal Article
%D 2006
%J PROTEOMICS
%P 4246-4258
%V 6
%N 15
%U http://dx.doi.org/10.1002/pmic.200500764
%A Takashi Suzuki
%A Masaaki Ito
%A Toru Ezure
%A Masamitsu Shikata
%A Eiji Ando
%A Toshihiko Utsumi
%A Susumu Tsunasawa
%A Osamu Nishimura
%T N-Terminal protein modifications in an insect cell-free protein synthesis system and their identification by mass spectrometry
%0 Journal Article
%D 2006
%J PROTEOMICS
%P 4486-4495
%V 6
%N 16
%U http://dx.doi.org/10.1002/pmic.200600126
%A Donahue MP
%A Rose K
%A Hochstrasser D
%A Vonderscher J
%A Grass P
%A Chibout SD
%A Nelson CL
%A Sinnaeve P
%A Goldschmidt P
%A Granger CB
%T Discovery of proteins related to coronary artery disease using industrial-scale proteomics analysis of pooled plasma
%0 Journal Article
%D 2006
%J Am Heart J
%P 478-85
%V 152
%N 3
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=16923417&dopt=Abstract
%A Lee CW
%A Lin MY
%A Lee WC
%A Chou MH
%A Hsieh CS
%A Lee SY
%A Chuang JH
%T Characterization of plasma proteome in biliary atresia
%0 Journal Article
%D 2007
%J Clin Chim Acta
%P 104-9
%V 375
%N 1-2
%U http://dx.doi.org/10.1016/j.cca.2006.06.019
%A Smith RD
%A Tang K
%A Shen Y
%T Ultra-sensitive and quantitative characterization of proteomes
%0 Journal Article
%D 2006
%J Mol Biosyst
%P 221-30
%V 2
%N 5
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=16880940&dopt=Abstract
%A William R. Otto
%A Ketan Patel
%A Iain McKinnell
%A Marissa D. Evans
%A Chung-Yin Lee
%A David Frith
%A Sarah Hanrahan
%A Kenneth Blight
%A Nikolaus Blin
%A Tuncay Kayademir
%A Richard Poulsom
%A Rosemary Jeffery
%A Toby Hunt
%A Nicholas A. Wright
%A Fiona McGregor
%A Karin A. Oien
%T Identification of blottin: A novel gastric trefoil factor family-2 binding protein
%0 Journal Article
%D 2006
%J PROTEOMICS
%P 4235-4245
%V 6
%N 15
%U http://dx.doi.org/10.1002/pmic.200500911
%A Michael Hamacher
%A Rolf Apweiler
%A Georg Arnold
%A Albert Becker
%A Martin Blüggel
%A Odile Carrette
%A Christine Colvis
%A Michael J. Dunn
%A Thomas Fröhlich
%A Michael Fountoulakis
%A André van Hall
%A Friedrich Herberg
%A Juango Ji
%A Hans Kretzschmar
%A Piotr Lewczuk
%A Gert Lub
%T HUPO Brain Proteome Project: Summary of the pilot phase and introduction of a comprehensive data reprocessing strategy
%0 Journal Article
%D 2006
%J PROTEOMICS
%P 4890-4898
%V 6
%N 18
%U http://dx.doi.org/10.1002/pmic.200600295
%A Svetlov SI
%A Xiang Y
%A Oli MW
%A Foley DP
%A Huang G
%A Hayes RL
%A Ottens AK
%A Wang KK
%T Identification and preliminary validation of novel biomarkers of acute hepatic ischaemia/reperfusion injury using dual-platform proteomic/degradomic approaches
%0 Journal Article
%D 2006
%J Biomarkers
%P 355-69
%V 11
%N 4
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=16908442&dopt=Abstract
%A Takeuchi T
%A Inoue S
%A Yokosawa H
%T Identification and Herc5-mediated ISGylation of novel target proteins
%0 Journal Article
%D 2006
%J Biochem Biophys Res Commun
%P 473-7
%V 348
%N 2
%U http://dx.doi.org/10.1016/j.bbrc.2006.07.076
%A Petric TC
%A Brne P
%A Gabor B
%A Govednik L
%A Barut M
%A Strancar A
%A Kralj LZ
%T Anion-exchange chromatography using short monolithic columns as a complementary technique for human serum albumin depletion prior to human plasma proteome analysis
%0 Journal Article
%D 2007
%J J Pharm Biomed Anal
%P 243-9
%V 43
%N 1
%U http://dx.doi.org/10.1016/j.jpba.2006.06.019
%A George Th. Tsangaris
%A Panagiotis Karamessinis
%A Aggeliki Kolialexi
%A Spiros D. Garbis
%A Aris Antsaklis
%A Ariadni Mavrou
%A Michael Fountoulakis
%T Proteomic analysis of amniotic fluid in pregnancies with Down syndrome
%0 Journal Article
%D 2006
%J PROTEOMICS
%P 4410-4419
%V 6
%N 15
%U http://dx.doi.org/10.1002/pmic.200600085
%A Kilstrup M
%T Proteomics of Lactococcus lactis: phenotypes for a domestic bacterium
%0 Journal Article
%D 2006
%J Methods Biochem Anal
%P 149-78
%V 49
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%A Katie Cottingham
%T Research Profile: Sample handling washes proteins away
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%D
%J
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%A Katie Cottingham
%T Delving deep into the parasite proteome
%0 Journal Article
%D
%J
%P -
%V
%N
%U http://pubs.acs.org/subscribe/journals/ancham/78/i15/html/0806biosphere.html
%A Katherine Hollywood
%A Daniel R. Brison
%A Royston Goodacre
%T Metabolomics: Current technologies and future trends
%0 Journal Article
%D 2006
%J PROTEOMICS
%P 4716-4723
%V 6
%N 17
%U http://dx.doi.org/10.1002/pmic.200600106
%A Kaatje Lenaerts
%A Milka Sokolovi
%A Freek G. Bouwman
%A Wouter H. Lamers
%A Edwin C. Mariman
%A Johan Renes
%T Starvation Induces Phase-Specific Changes in the Proteome of Mouse Small Intestine
%0 Journal Article
%D 2006
%J JOURNAL OF PROTEOME RESEARCH
%P 2113-2122
%V 5
%N 9
%U http://dx.doi.org/10.1021/pr060183+
%A Maria Agirregabiria
%A Francisco Javier Blanco
%A Javier Berganzo
%A Asier Fullaondo
%A Ana María Zubiaga
%A Kepa Mayora
%A Jesús M. Ruano-López
%T SDS-CGE of proteins in microchannels made of SU-8 films
%0 Journal Article
%D 2006
%J ELECTROPHORESIS
%P 3627-3634
%V 27
%N 18
%U http://dx.doi.org/10.1002/elps.200600103
%A Moon H
%A Wheeler AR
%A Garrell RL
%A Loo JA
%A Kim CJ
%T An integrated digital microfluidic chip for multiplexed proteomic sample preparation and analysis by MALDI-MS
%0 Journal Article
%D 2006
%J Lab Chip
%P 1213-9
%V 6
%N 9
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=16929401&dopt=Abstract
%A Vo TD
%A Palsson B
%T Building the power house: Recent advances in mitochondrial studies through proteomics and systems biology
%0 Journal Article
%D 2007
%J Am J Physiol Cell Physiol
%P C164-77
%V 292
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%U http://dx.doi.org/10.1152/ajpcell.00193.2006
%A Li J
%A Yin C
%A Okamoto H
%A Jaffe H
%A Oldfield EH
%A Zhuang Z
%A Vortmeyer AO
%A Rushing EJ
%T Proteomic Analysis of Inclusion Body Myositis
%0 Journal Article
%D 2006
%J J Neuropathol Exp Neurol
%P 826-833
%V 65
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%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=16896316&dopt=Abstract
%A Roses AD
%T On the discovery of the genetic association of Apolipoprotein E genotypes and common late-onset Alzheimer disease
%0 Journal Article
%D 2006
%J J Alzheimers Dis
%P 361-6
%V 9
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%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=16914873&dopt=Abstract
%A Beynon RJ
%A Pratt JM
%T Strategies for measuring dynamics: the temporal component of proteomics
%0 Journal Article
%D 2006
%J Methods Biochem Anal
%P 15-25
%V 49
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%A Karsten Boldt
%A Wolfgang Rist
%A Stefanie M. Weiss
%A Andreas Weith
%A Martin C. Lenter
%T FPRL-1 induces modifications of migration-associated proteins in human neutrophils
%0 Journal Article
%D 2006
%J PROTEOMICS
%P 4790-4799
%V 6
%N 17
%U http://dx.doi.org/10.1002/pmic.200600121
%A Griswold IJ
%A Macpartlin M
%A Bumm T
%A Goss VL
%A O'hare T
%A Lee KA
%A Corbin AS
%A Stoffregen EP
%A Smith C
%A Johnson K
%A Moseson EM
%A Wood LJ
%A Polakiewicz RD
%A Druker BJ
%A Deininger MW
%T Kinase domain mutants of bcr-abl exhibit altered transformation potency, kinase activity, and substrate utilization, irrespective of sensitivity to imatinib
%0 Journal Article
%D 2006
%J Mol Cell Biol
%P 6082-93
%V 26
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%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=16880519&dopt=Abstract
%A Kirouac DC
%A Zandstra PW
%T Understanding cellular networks to improve hematopoietic stem cell expansion cultures
%0 Journal Article
%D 2006
%J Curr Opin Biotechnol
%P 538-47
%V 17
%N 5
%U http://dx.doi.org/10.1016/j.copbio.2006.07.003
%A Clynen E
%A Huybrechts J
%A Verleyen P
%A De Loof A
%A Schoofs L
%T Annotation of novel neuropeptide precursors in the migratory locust based on transcript screening of a public EST database and mass spectrometry
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%A Elena Silvestri
%A Maria Moreno
%A Luigi Schiavo
%A Pieter de Lange
%A Assunta Lombardi
%A Angela Chambery
%A Augusto Parente
%A Antonia Lanni
%A Fernando Goglia
%T A Proteomics Approach to Identify Protein Expression Changes in Rat Liver Following Administration of 3,5,3'-Triiodo-L-thyronine
%0 Journal Article
%D 2006
%J JOURNAL OF PROTEOME RESEARCH
%P 2317-2327
%V 5
%N 9
%U http://dx.doi.org/10.1021/pr060141l
%A Raj S Kasthuri
%A Michael R Verneris
%A Hassan N Ibrahim
%A Bernd Jilma
%A Gary L Nelsestuen
%T Studying multiple protein profiles over time to assess biomarker validity
%0 Journal Article
%D 2006
%J Expert Review of Proteomics
%P 455-464
%V 3
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%U http://dx.doi.org/10.1586/14789450.3.4.455
%A Mace CR
%A Striemer CC
%A Miller BL
%T Theoretical and experimental analysis of arrayed imaging reflectometry as a sensitive proteomics technique
%0 Journal Article
%D 2006
%J Anal Chem
%P 5578-83
%V 78
%N 15
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=16878898&dopt=Abstract
%T Analytical Currents: Size-selective lipid bilayer for binding assays | Probing biological noise | Quantitative imaging of proteins on chips | Crystal monitors live cells in real time | Combined IRMPD and ECD for proteomics | AFM takes on electrophoresis |
%0 Journal Article
%D 2006
%J ANALYTICAL CHEMISTRY
%P 5235-5238
%V 78
%N 15
%U http://pubs.acs.org/subscribe/journals/ancham/78/i15/html/0806currents.html
%A Xin Liu
%A David J. McNally
%A Harald Nothaft
%A Christine M. Szymanski
%A Jean-Robert Brisson
%A Jianjun Li
%T Mass Spectrometry-Based Glycomics Strategy for Exploring N-Linked Glycosylation in Eukaryotes and Bacteria
%0 Journal Article
%D 2006
%J ANALYTICAL CHEMISTRY
%P 6081-6087
%V 78
%N 17
%U http://dx.doi.org/10.1021/ac060516m
%A Johanne Morel
%A Stephane Claverol
%A Sebastien Mongrand
%A Fabienne Furt
%A Jerome Fromentin
%A Jean-Jacques Bessoule
%A Jean-Pierre Blein
%A Francoise Simon-Plas
%T Proteomics of Plant Detergent-resistant Membranes
%0 Journal Article
%D 2006
%J Mol Cell Proteomics
%P 1396-1411
%V 5
%N 8
%U http://www.mcponline.org/cgi/content/abstract/5/8/1396?etoc
%A Taylor CF
%A Hermjakob H
%A Julian RK
%A Garavelli JS
%A Aebersold R
%A Apweiler R
%T The Work of the Human Proteome Organisation's Proteomics Standards Initiative (HUPO PSI)
%0 Journal Article
%D 2006
%J OMICS
%P 145-51
%V 10
%N 2
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=16901219&dopt=Abstract
%A Giorgio Arrigoni
%A Celine Fernandez
%A Cecilia Holm
%A Michaela Scigelova
%A Peter James
%T Comparison of MS/MS Methods for Protein Identification from 2D-PAGE
%0 Journal Article
%D 2006
%J JOURNAL OF PROTEOME RESEARCH
%P 2294-2300
%V 5
%N 9
%U http://dx.doi.org/10.1021/pr0601281
%A Ozlem Onder
%A Heeyong Yoon
%A Bianca Naumann
%A Michael Hippler
%A Andrew Dancis
%A Fevzi Daldal
%T Modifications of the Lipoamide-containing Mitochondrial Subproteome in a Yeast Mutant Defective in Cysteine Desulfurase
%0 Journal Article
%D 2006
%J Mol Cell Proteomics
%P 1426-1436
%V 5
%N 8
%U http://www.mcponline.org/cgi/content/abstract/5/8/1426?etoc
%A Katie Cottingham
%T Research Profile: On-line, real-time trypsin digestion in a nanoLC/MS system
%0 Journal Article
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%J
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%A Linda Sage
%T Research Profile: Herbicides can alter crop proteomes
%0 Journal Article
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%A Wu Y
%A Craig A
%T Comparative proteomic analysis of metabolically labelled proteins from Plasmodium falciparum isolates with different adhesion properties
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%A Yamayoshi Y
%A Watanabe T
%A Tanabe M
%A Hoshino K
%A Matsumoto K
%A Morikawa Y
%A Shimadzu M
%A Kitajima M
%A Tanigawara Y
%T Novel Application of ProteinChip Technology Exploring Acute Rejection Markers of Rat Small Bowel Transplantation
%0 Journal Article
%D 2006
%J Transplantation
%P 320-6
%V 82
%N 3
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=16906028&dopt=Abstract
%A Morris RM
%A Sowell S
%A Barofsky D
%A Zinder S
%A Richardson R
%T Transcription and mass-spectroscopic proteomic studies of electron transport oxidoreductases in Dehalococcoides ethenogenes
%0 Journal Article
%D 2006
%J Environ Microbiol
%P 1499-509
%V 8
%N 9
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=16913910&dopt=Abstract
%A Yu-Fen Lin
%A Ming-Shiang Wu
%A Chia-Che Chang
%A Sheng-Wei Lin
%A Jaw-Town Lin
%A Yuh-Ju Sun
%A Ding-Shinn Chen
%A Lu-Ping Chow
%T Comparative Immunoproteomics of Identification and Characterization of Virulence Factors from Helicobacter pylori Related to Gastric Cancer
%0 Journal Article
%D 2006
%J Mol Cell Proteomics
%P 1484-1496
%V 5
%N 8
%U http://www.mcponline.org/cgi/content/abstract/5/8/1484?etoc
%A Andreas M. Boehm
%A Albert Sickmann
%T A comprehensive dictionary of protein accession codes for complete protein accession identifier alias resolving
%0 Journal Article
%D 2006
%J PROTEOMICS
%P 4223-4226
%V 6
%N 15
%U http://dx.doi.org/10.1002/pmic.200600018
%A Victor Zgoda
%A Olga Tikhonova
%A Anastasia Viglinskaya
%A Marina Serebriakova
%A Andrey Lisitsa
%A Alexander Archakov
%T Proteomic profiles of induced hepatotoxicity at the subcellular level
%0 Journal Article
%D 2006
%J PROTEOMICS
%P 4662-4670
%V 6
%N 16
%U http://dx.doi.org/10.1002/pmic.200600342
%A Gonzalez-Buitrago JM
%A Ferreira L
%A Lorenzo I
%T Urinary proteomics
%0 Journal Article
%D 2007
%J Clin Chim Acta
%P 49-56
%V 375
%N 1-2
%U http://dx.doi.org/10.1016/j.cca.2006.07.027
%A Yoshiyuki Suehara
%A Tadashi Kondo
%A Kiyonaga Fujii
%A Tadashi Hasegawa
%A Akira Kawai
%A Kunihiko Seki
%A Yasuo Beppu
%A Toshihide Nishimura
%A Hisashi Kurosawa
%A Setsuo Hirohashi
%T Proteomic signatures corresponding to histological classification and grading of soft-tissue sarcomas
%0 Journal Article
%D 2006
%J PROTEOMICS
%P 4402-4409
%V 6
%N 15
%U http://dx.doi.org/10.1002/pmic.200600196
%A Gumber S
%A Taylor DL
%A Whittington RJ
%T Protein extraction from Mycobacterium avium subsp. paratuberculosis: Comparison of methods for analysis by sodium dodecyl sulphate polyacrylamide gel electrophoresis, native PAGE and surface enhanced laser desorption/ionization time of flight mass spectro
%0 Journal Article
%D 2007
%J J Microbiol Methods
%P 115-27
%V 68
%N 1
%U http://dx.doi.org/10.1016/j.mimet.2006.07.003
%A Tsangaris GT
%A Kolialexi A
%A Karamessinis PM
%A Anagnostopoulos AK
%A Antsaklis A
%A Fountoulakis M
%A Mavrou A
%T The normal human amniotic fluid supernatant proteome
%0 Journal Article
%D 2006
%J In Vivo
%P 479-90
%V 20
%N 4
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=16900778&dopt=Abstract
%A Champak Das
%A Z. Hugh Fan
%T Effects of separation length and voltage on isoelectric focusing in a plastic microfluidic device
%0 Journal Article
%D 2006
%J ELECTROPHORESIS
%P 3619-3626
%V 27
%N 18
%U http://dx.doi.org/10.1002/elps.200600013
%A Wang G
%A Wu WW
%A Pisitkun T
%A Hoffert JD
%A Knepper MA
%A Shen RF
%T Automated Quantification Tool for High-Throughput Proteomics Using Stable Isotope Labeling and LC-MS(n)()
%0 Journal Article
%D 2006
%J Anal Chem
%P 5752-61
%V 78
%N 16
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=16906720&dopt=Abstract
%A Remold SK
%T Protein expression tells only half the story
%0 Journal Article
%D 2006
%J Nat Genet
%P 979-80
%V 38
%N 9
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=16941006&dopt=Abstract
%A Kuo-Chen Chou and Hong-Bin Shen
%T Predicting Eukaryotic Protein Subcellular Location by Fusing Optimized Evidence-Theoretic K-Nearest Neighbor Classifiers
%0 Journal Article
%D 2006
%J JOURNAL OF PROTEOME RESEARCH
%P 1888-1897
%V 5
%N 8
%U http://dx.doi.org/10.1021/pr060167c
%A Kai Stühler
%A Kathy Pfeiffer
%A Cornelia Joppich
%A Christian Stephan
%A Klaus Jung
%A Michael Müller
%A Oliver Schmidt
%A Andre van Hall
%A Michael Hamacher
%A Wolfgang Urfer
%A Helmut E. Meyer
%A Katrin Marcus
%T Pilot study of the Human Proteome Organisation Brain Proteome Project: Applying different 2-DE techniques to monitor proteomic changes during murine brain development
%0 Journal Article
%D 2006
%J PROTEOMICS
%P 4899-4913
%V 6
%N 18
%U http://dx.doi.org/10.1002/pmic.200600089
%A Lianmei Feng
%A Ron Orlando
%A James H. Prestegard
%T Amide Proton Back-Exchange in Deuterated Peptides: Applications to MS and NMR Analyses
%0 Journal Article
%D 2006
%J ANALYTICAL CHEMISTRY
%P 6885-6892
%V 78
%N 19
%U http://dx.doi.org/10.1021/ac060948x
%A Katie Cottingham
%T Research Profile: Proteomics of starvation
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%J
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%U http://pubs.acs.org/subscribe/journals/jprobs/5/i09/html/0906profile2.html
%A Brigitte L. Simons
%A Guanghui Wang
%A Rong-Fong Shen
%A Mark A. Knepper
%T In vacuo isotope coded alkylation technique (IVICAT); an N-terminal stable isotopic label for quantitative liquid chromatography/mass spectrometry proteomics
%0 Journal Article
%D 2006
%J Rapid Communications in Mass Spectrometry
%P 2463-2477
%V 20
%N 16
%U http://dx.doi.org/10.1002/rcm.2615
%A Gnatenko DV
%A Perrotta PL
%A Bahou WF
%T Proteomic approaches to dissect platelet function: one-half of the story
%0 Journal Article
%D 2006
%J Blood
%P 3983-91
%V 108
%N 13
%U http://dx.doi.org/10.1182/blood-2006-06-026518
%A Panagiotis G. Zerefos
%A Konstantinos Vougas
%A Ploumisti Dimitraki
%A Sophia Kossida
%A Andreas Petrolekas
%A Konstantinos Stravodimos
%A Aris Giannopoulos
%A Michael Fountoulakis
%A Antonia Vlahou
%T Characterization of the human urine proteome by preparative electrophoresis in combination with 2-DE
%0 Journal Article
%D 2006
%J PROTEOMICS
%P 4346-4355
%V 6
%N 15
%U http://dx.doi.org/10.1002/pmic.200500671
%A Burkovski A
%T Proteomics of Corynebacterium glutamicum: essential industrial bacterium
%0 Journal Article
%D 2006
%J Methods Biochem Anal
%P 137-47
%V 49
%N
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=16929678&dopt=Abstract
%A Pan Du
%A Warren A. Kibbe
%A Simon M. Lin
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%T A targeted proteomic approach for the identification of tumor-associated membrane antigens using the ProteomeLab(trade mark) PF-2D in tandem with mass spectrometry
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%T Application of the Accurate Mass and Time Tag Approach to the Proteome Analysis of Sub-cellular Fractions Obtained from Rhodobacter sphaeroides 2.4.1. Aerobic and Photosynthetic Cell Cultures
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%T Analysis of the HUPO Brain Proteome reference samples using 2-D DIGE and 2-D LC-MS/MS
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%T Proteome modifications of the medicinal leech nervous system under bacterial challenge
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%T Proteomic analysis of a penicillin-tolerant rgg mutant strain of Streptococcus pyogenes
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%T Online concentration and separation of basic proteins using a cationic polyelectrolyte in the presence of reversed electroosmotic flow
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%T Genomics and Proteomics in Epidemiology: Treasure Trove or "High-Tech Stamp Collecting"?
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%J Epidemiology
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%A Sandra Orchard
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%T HUPO Publications Committee Meeting 21 April 2006, San Francisco, CA, USA
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%T Adaptation of proteins to different environments: A comparison of proteome structural properties in Bacillus subtilis and Escherichia coli
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%T A Novel Approach of Protein Immobilization for Protein Chips Using an Oligo-Cysteine Tag
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%T High-throughput localization of organelle proteins by mass spectrometry: a quantum leap for cell biology
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%A Natascia Campostrini
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%T Proteomic analysis of anti-angiogenic effects by a combined treatment with vinblastine and rapamycin in an endothelial cell line
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%J PROTEOMICS
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%A Young Mok Park
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%T Profiling human brain proteome by multi-dimensional separations coupled with MS
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%A Florian Wolschin
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%T Methionine oxidation in peptides-a source for false positive phosphopeptide identification in neutral loss driven MS3
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%J Rapid Communications in Mass Spectrometry
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%A Andrzej K. Drukier
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%A Jasminka Godovac-Zimmermann
%T Looking for Thom's Biomarkers with Proteomics
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%J JOURNAL OF PROTEOME RESEARCH
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%A Zhiyou Fang
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%A James W. Lillard
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%T Proteomic Identification and Functional Characterization of a Novel ARF6 GTPase-activating Protein, ACAP4
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%J Mol Cell Proteomics
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%A Boris Zybailov
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%T Statistical Analysis of Membrane Proteome Expression Changes in Saccharomyces cerevisiae
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%T Quantification of Intermediate-Abundance Proteins in Serum by Multiple Reaction Monitoring Mass Spectrometry in a Single-Quadrupole Ion Trap
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%T Detection of Protein Tyrosine Phosphorylation by Open Sandwich Fluoroimmunoassay
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%A Daniel Remondini
%A Reetta Nylund
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%A Florence Poulletier de Gannes
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%A Emmanuelle Haro
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%A Claudio Franceschi
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%T Gene expression changes in human cells after exposure to mobile phone microwaves
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%T Proteomic approaches to bacterial differentiation
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%T Analyzing Proteomes and Protein Function Using Graphical Comparative Analysis of Tandem Mass Spectrometry Results
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%T Comparative analysis of serum proteomes: discovery of proteins associated with osteonecrosis of the femoral head
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%A Helena Lexander
%A Carina Palmberg
%A Ulf Hellman
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%T Correlation of protein expression, Gleason score and DNA ploidy in prostate cancer
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%T Proteomic Profiling in Musculoskeletal Oncology by MALDI Mass Spectrometry
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%T Protein Intrinsic Disorder and Human Papillomaviruses: Increased Amount of Disorder in E6 and E7 Oncoproteins from High Risk HPVs
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%T Protein Expression Profiling Identifies Cyclophilin A as a Molecular Target in Fhit-Mediated Tumor Suppression
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%A Micah Hamady
%A Rob Knight
%T DivergentSet, a Tool for Picking Non-redundant Sequences from Large Sequence Collections
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%J Mol Cell Proteomics
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%A Andrew Hopkinson
%A Richard S. McIntosh
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%T Proteomic Analysis of Amniotic Membrane Prepared for Human Transplantation: Characterization of Proteins and Clinical Implications
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%U http://dx.doi.org/10.1021/pr050425q
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%A Huiming Yuan
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%T Macroporous polyacrylamide-based monolithic column with immobilized pH gradient for protein analysis
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%A Young-Ki Paik
%A Seul-Ki Jeong
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%T C.elegans : an invaluable model organism for the proteomics studies of the cholesterol-mediated signaling pathway
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%J Expert Review of Proteomics
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%T Proteomic Analysis of Cerebrospinal Fluid Changes Related to Postmortem Interval
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%T Neuroproteomics: Relevance toAnxiety Disorders
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%T A proteomic study of Methylobacterium extorquens reveals a response regulator essential for epiphytic growth
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%T Proteomics-based identification of secreted protein dihydrodiol dehydrogenase as a novel serum markers of non-small cell lung cancer
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%T Regulation of the Raf-MEK-ERK pathway by protein phosphatase 5
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%T Detection of biomarkers with a multiplex quantitative proteomic platform in cerebrospinal fluid of patients with neurodegenerative disorders
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%T Proteomic methods in nutrition
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%A Ryan C. Mahnke
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%T An Integrated Proteomic Workflow for Two-Dimensional Differential Gel Electrophoresis and Robotic Spot Picking
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%A Nilesh S. Tannu
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%T Effect of staining reagent on peptide mass fingerprinting from in-gel trypsin digestions: A comparison of SyproRubyTM and DeepPurpleTM
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%J ELECTROPHORESIS
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%A Milan Madera
%A Yehia Mechref
%A Iveta Klouckova
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%T Semiautomated High-Sensitivity Profiling of Human Blood Serum Glycoproteins through Lectin Preconcentration and Multidimensional Chromatography/Tandem Mass Spectrometry
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%T Proteomic profiling of cholangiocarcinoma: Diagnostic potential of SELDI-TOF MS in malignant bile duct stricture
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%A Sheerin Khatib-Shahidi
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%T Direct Molecular Analysis of Whole-Body Animal Tissue Sections by Imaging MALDI Mass Spectrometry
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%J ANALYTICAL CHEMISTRY
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%A Trisiripisal P
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%T Microfluidic Liquid Chromatography System for Proteomic Applications and Biomarker Screening
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%A Cheng S. Lee
%T Microfluidic technologies for MALDI-MS in proteomics
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%A Ad L. de Jong
%A Marijke A. E. Mol
%A Ben L. M. van Baar
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%T ProteomIQ Blue, a Potent Post-stain for the Visualization and Subsequent Mass Spectrometry Based Identification of Fluorescent Stained Proteins on 2D-gels
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%T The proteomics of keratin proteins
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%A Lennart Martens
%A Gerhard Körting
%A Daniel C. Chamrad
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%T Automated reprocessing pipeline for searching heterogeneous mass spectrometric data of the HUPO Brain Proteome Project pilot phase
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%J PROTEOMICS
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%T A proteomic approach to the identification of early molecular targets changed by L-ascorbic acid in NB4 human leukemia cells
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%A Juan Madoz-Gurpide
%A Paula Lopez-Serra
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%T Proteomics-based Validation of Genomic Data: Applications in Colorectal Cancer Diagnosis
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%J Mol Cell Proteomics
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%A S. Sevugarajan
%A Ruwan T. Kurulugama
%A Stormy L. Koeniger
%A Samuel I. Merenbloom
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%T Split-Field Drift Tube/Mass Spectrometry and Isotopic Labeling Techniques for Determination of Single Amino Acid Polymorphisms
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%J JOURNAL OF PROTEOME RESEARCH
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%U http://dx.doi.org/10.1021/pr060068z
%A Keisuke Usui
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%A Kisho Shiseki
%A Yuji Maruo
%A Toshiyuki Matsushima
%A Katsuyoshi Takahashi
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%T A self-contained polymeric 2-DE chip system for rapid and easy analysis
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%A Alexander Leitner
%A Florentina Castro-Rubio
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%T Identification of Marker Proteins for the Adulteration of Meat Products with Soybean Proteins by Multidimensional Liquid Chromatography-Tandem Mass Spectrometry
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%U http://dx.doi.org/10.1021/pr060145q
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%A Tadashi Kondo
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%A Keiji Iwatsuki
%A Setsuo Hirohashi
%T Toward a comprehensive quantitative proteome database: protein expression map of lymphoid neoplasms by 2-D DIGE and MS
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%J PROTEOMICS
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%U http://dx.doi.org/10.1002/pmic.200600097
%A Laurent Miguet
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%A Philippe Decloquement
%A Raoul Herbrecht
%A Noelle Potier
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%A Alain Van Dorsselaer
%T Discovery and Identification of Potential Biomarkers in a Prospective Study of Chronic Lymphoid Malignancies Using SELDI-TOF-MS
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%J JOURNAL OF PROTEOME RESEARCH
%P 2258-2269
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%U http://dx.doi.org/10.1021/pr060058y
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%T 2-DE Proteomic Profiling of Neuronal Stem Cells
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%J Neurodegener Dis
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%T Currents: Revisiting a classic neurobiology experiment | Proteins associated with suicidal behavior | Microchip CE/MS for top-down analyses | Combined IRMPD and ECD for proteomics | Hen egg white proteomics | Imaging MS for biomarker discovery | How much
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%T Proteomic and bioinformatic analysis of iron- and sulfur-oxidizing Acidithiobacillus ferrooxidans using immobilized pH gradients and mass spectrometry
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%T Proteomic Analysis of Serum, Outflow Dialysate and Adsorbed Protein onto Dialysis Membranes (Polysulfone and PMMA) during Hemodialysis Treatment Using SELDI-TOF-MS
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%T Gel-Based Hippocampal Proteomic Analysis 2 Weeks following Traumatic Brain Injury to Immature Rats Using Controlled Cortical Impact
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%T Proteomic Analysis of Root Meristems and the Effects of Acetohydroxyacid Synthase-Inhibiting Herbicides in the Root of Medicago Truncatula
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%T Effects of Global System for Mobile Communications 1800 MHz radiofrequency electromagnetic fields on gene and protein expression in MCF-7 cells
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%T Detection of Phosphopeptides by Localized Surface Plasma Resonance of Titania-Coated Gold Nanoparticles Immobilized on Glass Substrates
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%T Analytical Currents: Contaminants in nanoparticles affect cells | Microfluidic proteomic reactor | Detecting protease activity | Simultaneous preparation of samples for MALDI | Cells customize lipid-silica nanostructures | Controlled coalescence of drople
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%T Selective Ion Tracing and MSn Analysis of Peptide Digests from FSBA-Treated Kinases for the Analysis of Protein ATP-Binding Sites
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%A Jane English
%A Kyla Pennington
%A David Cotter
%A Kai Stuehler
%A Katrin Marcus
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%A Michael J. Dunn
%A Guang-Zhong Yang
%T Examination of 2-DE in the Human Proteome Organisation Brain Proteome Project pilot studies with the new RAIN gel matching technique
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%J PROTEOMICS
%P 5030-5047
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%U http://dx.doi.org/10.1002/pmic.200600152
%A Lauren R. H. Krumpe
%A Andrew J. Atkinson
%A Gary W. Smythers
%A Andrea Kandel
%A Kathryn M. Schumacher
%A James B. McMahon
%A Lee Makowski
%A Toshiyuki Mori
%T T7 lytic phage-displayed peptide libraries exhibit less sequence bias than M13 filamentous phage-displayed peptide libraries
%0 Journal Article
%D 2006
%J PROTEOMICS
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%U http://dx.doi.org/10.1002/pmic.200500606
%A Philip Doran
%A Geraldine Martin
%A Paul Dowling
%A Harald Jockusch
%A Kay Ohlendieck
%T Proteome analysis of the dystrophin-deficient MDX diaphragm reveals a drastic increase in the heat shock protein cvHSP
%0 Journal Article
%D 2006
%J PROTEOMICS
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%U http://dx.doi.org/10.1002/pmic.200600082
%A Hiller K
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%A Munch R
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%T JVirGel 2.0: computational prediction of proteomes separated via two dimensional gel electrophoresis under consideration of membrane and secreted proteins
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%J Bioinformatics
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%A Vaughn CP
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%A Lim MS
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%T Analytical Characteristics of Cleavable Isotope-Coded Affinity Tag-LC-Tandem Mass Spectrometry for Quantitative Proteomic Studies
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%J J Mol Diagn
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%A Marie-Catherine Le Bihan
%A Yanwen Hou
%A Nathan Harris
%A Edward Tarelli
%A Gary R. Coulton
%T Proteomic analysis of fast and slow muscles from normal and kyphoscoliotic mice using protein arrays, 2-DE and MS
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%J PROTEOMICS
%P 4646-4661
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%U http://dx.doi.org/10.1002/pmic.200500746
%A Jyh-Bing Tang
%A Yee-Hsiung Chen
%T Identification of a tyrosine-phosphorylated CCCTC-binding nuclear factor in capacitated mouse spermatozoa
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%D 2006
%J PROTEOMICS
%P 4800-4807
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%U http://dx.doi.org/10.1002/pmic.200600256
%A Maria Staiano
%A Viviana Scognamiglio
%A Gianfranco Mamone
%A Mauro Rossi
%A Antonietta Parracino
%A Mose' Rossi
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%T Glutamine-Binding Protein from Escherichia Coli Specifically Binds a Wheat Gliadin Peptide. 2. Resonance Energy Transfer Studies Suggest a New Sensing Approach for an Easy Detection of Wheat Gliadin
%0 Journal Article
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%J JOURNAL OF PROTEOME RESEARCH
%P 2083-2086
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%U http://dx.doi.org/10.1021/pr060258+
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%A Palaksha KJ
%A Yang HH
%A Shin YS
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%A Jung TS
%T Partial two-dimensional gel electrophoresis (2-DE) maps of Streptococcus iniae ATCC29178 and Lactococcus garvieae KG9408
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%J Dis Aquat Organ
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%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=16875393&dopt=Abstract
%A Gary B Smejkal
%T I’m an -omics, you’re an -omics.
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%J Expert Review of Proteomics
%P 383-385
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%U http://dx.doi.org/10.1586/14789450.3.4.383
%A Takuji Nabetani
%A Kenji Miyazaki
%A Yo Tabuse
%A Akira Tsugita
%T Analysis of acidic peptides with a matrix-assisted laser desorption/ionization mass spectrometry using positive and negative ion modes with additive monoammonium phosphate
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%J PROTEOMICS
%P 4456-4465
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%U http://dx.doi.org/10.1002/pmic.200500916
%A Melanie Föcking
%A Paul J. Boersema
%A Niaobh O'Donoghue
%A Gert Lubec
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%A David R. Cotter
%A Michael J. Dunn
%T 2-D DIGE as a quantitative tool for investigating the HUPO Brain Proteome Project mouse series
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%J PROTEOMICS
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%U http://dx.doi.org/10.1002/pmic.200600269
%A Johan Malmström
%A Hookeun Lee
%A Alexey I. Nesvizhskii
%A David Shteynberg
%A Sonali Mohanty
%A Erich Brunner
%A Mingliang Ye
%A Gerhard Weber
%A Christoph Eckerskorn
%A Ruedi Aebersold
%T Optimized Peptide Separation and Identification for Mass Spectrometry Based Proteomics via Free-Flow Electrophoresis
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%J JOURNAL OF PROTEOME RESEARCH
%P 2241-2249
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%U http://dx.doi.org/10.1021/pr0600632
%A Akira Shimizu
%A Toyofumi Nakanishi
%A Ayako Miyazaki
%T Detection and characterization of variant and modified structures of proteins in blood and tissues by mass spectrometry
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%J Mass Spectrometry Reviews
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%A Jones AR
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%A Spellman P
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%T FuGE: Functional Genomics Experiment Object Model
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%J OMICS
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%A Sprenger RR
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%T Spatial segregation of transport and signalling functions between human endothelial caveolae and lipid raft proteomes
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%J Biochem J
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%U http://dx.doi.org/10.1042/BJ20060355
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%A Larissa Georgeon Richard
%A Bryan Krastins
%A Sara Forrester
%A Brian B. Haab
%A Isaac S. Kohane
%A Raju Kucherlapati
%T Mass Spectrometry-Based Study of the Plasma Proteome in a Mouse Intestinal Tumor Model
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%J JOURNAL OF PROTEOME RESEARCH
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%A Taylor BS
%A Varambally S
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%T Differential proteomic alterations between localised and metastatic prostate cancer
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%J Br J Cancer
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%A D. Fenyo
%A R. C. Beavis
%T Using Annotated Peptide Mass Spectrum Libraries for Protein Identification
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%U http://dx.doi.org/10.1021/pr0602085
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%A Zhu L
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%A Murrell J
%T Aberrantly regulated proteins in frontotemporal dementia
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%J Biochem Biophys Res Commun
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%A Guest PC
%T Identification of Early Proteomic Markers for Hepatic Steatosis
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%J Chem Res Toxicol
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%A Barbara Sitek
%A Sebastian Potthoff
%A Thomas Schulenborg
%A Johannes Stegbauer
%A Tobias Vinke
%A Lars-Christian Rump
%A Helmut E. Meyer
%A Oliver Vonend
%A Kai Stühler
%T Novel approaches to analyse glomerular proteins from smallest scale murine and human samples using DIGE saturation labelling
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%J PROTEOMICS
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%U http://dx.doi.org/10.1002/pmic.200500739
%A Rossignol M
%T Proteomic analysis of phosphorylated proteins
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%J Curr Opin Plant Biol
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%T Protein Bipartivity and Essentiality in the Yeast Protein-Protein Interaction Network
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%J JOURNAL OF PROTEOME RESEARCH
%P 2177-2184
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%U http://dx.doi.org/10.1021/pr060106e
%A Chen CY
%A Jia JH
%A Zhang MX
%A Zhou YB
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%A Yu XP
%T Comparative proteomics of apoptosis initiation induced by 5-fluorouracil in human gastric cancer
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%J Chin J Physiol
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%A O'Connor CD
%A Clarke IN
%A Skipp P
%T Quest for complete proteome coverage
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%A Sandra Orchard
%A Rolf Apweiler
%A Robert Barkovich
%A Dawn Field
%A John S. Garavelli
%A David Horn
%A Andy Jones
%A Philip Jones
%A Randall Julian
%A Ruth McNally
%A Jason Nerothin
%A Norman Paton
%A Angel Pizarro
%A Sean Seymour
%A Chris Taylor
%A Stefan Wiemann
%A Henning Hermjakob
%T Proteomics and Beyond A report on the 3rd Annual Spring Workshop of the HUPO-PSI 21-23 April 2006, San Francisco, CA, USA
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%J PROTEOMICS
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%U http://dx.doi.org/10.1002/pmic.200600452
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%A Forbes J
%A Gros P
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%A Smith RD
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%T Proteomic analysis of Salmonella enterica serovar Typhimurium isolated from RAW 264.7 macrophages: Identification of a novel protein that contributes to the replication of serovar Typhimurium inside macrophages
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%J J Biol Chem
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%A Florence Bonnet-Bayeux
%A Marlčne Thomas
%A Jérôme Leprince
%A Pascal Joly
%A François Tron
%A Daničle Gilbert
%T Proteomic analysis of the autoantibody response following immunization with a single autoantigen
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%J PROTEOMICS
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%U http://dx.doi.org/10.1002/pmic.200600257
%A John Sinclair
%A Mark Weeks
%A Amna Butt
%A Jessica L. Worthington
%A Akunna Akpan
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%A Mike Waterfield
%A Donald Allanand
%A John F. Timms
%T Proteomic response of Schizosaccharomyces pombe to static and oscillating extremely low-frequency electromagnetic fields
%0 Journal Article
%D 2006
%J PROTEOMICS
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%U http://dx.doi.org/10.1002/pmic.200500861
%A Matthias P. A. Ebert
%A Dagmar Niemeyer
%A Sören O. Deininger
%A Thomas Wex
%A Claudia Knippig
%A Juliane Hoffmann
%A Jörg Sauer
%A Wolfgang Albrecht
%A Peter Malfertheiner
%A Christoph Röcken
%T Identification and Confirmation of Increased Fibrinopeptide A Serum Protein Levels in Gastric Cancer Sera by Magnet Bead Assisted MALDI-TOF Mass Spectrometry
%0 Journal Article
%D 2006
%J JOURNAL OF PROTEOME RESEARCH
%P 2152-2158
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%N 9
%U http://dx.doi.org/10.1021/pr060011c
%A Weiwen Zhang
%A Marina A. Gritsenko
%A Ronald J. Moore
%A David E. Culley
%A Lei Nie
%A Konstantinos Petritis
%A Eric F. Strittmatter
%A David G. Camp II
%A Richard D. Smith
%A Fred J. Brockman
%T A proteomic view of Desulfovibrio vulgaris metabolism as determined by liquid chromatography coupled with tandem mass spectrometry
%0 Journal Article
%D 2006
%J PROTEOMICS
%P 4286-4299
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%U http://dx.doi.org/10.1002/pmic.200500930
%T Currents: Why can't we analyze a whole proteome by MS? | Finding palmitoyl proteins | Phosphoproteomics of a signal transduction pathway | A step towards proteomics on a chip | Dynamic proteomics of single cells | Cancer proteins are connected differently
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%T Standards for Plasma and Serum Proteomics in Early Cancer Detection: A Needs Assessment Report from the National Institute of Standards and Technology-National Cancer Institute Standards, Methods, Assays, Reagents and Technologies Workshop, August 18–19
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%J Clin Chem
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%U http://dx.doi.org/10.1373/clinchem.2006.067249
%A Katie Cottingham
%T Meeting News: Overcoming ionization suppression in electrospray | New DESI-like ionization sources
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%T Sixth Annual Meeting on Proteomic Sample Preparation, part of the second annual Getting Optimized Targets Summit: 24-25 April 2006, Cambridge Healthtech Institute, MA, USA
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%J Expert Review of Proteomics
%P 395-397
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%A Toshiyuki Yokosuka
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%A Kinya Kobayashi
%A Atsushi Ohtake
%A Atsumu Hirabayashi
%A Yuichiro Hashimoto
%A Izumi Waki
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%T ?Information-Based-Acquisition? (IBA) technique with an ion-trap/time-of-flight mass spectrometer for high-throughput and reliable protein profiling
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%J Rapid Communications in Mass Spectrometry
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%A Yao H
%A Mihalek I
%A Lichtarge O
%T Rank information: A structure-independent measure of evolutionary trace quality that improves identification of protein functional sites
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%J Proteins
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%A Xiaoming Hu
%A Harriett C. Rea
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%A J. Regino Perez-Polo
%T Proteomic Analysis of Hypoxia/Ischemia-Induced Alteration of Cortical Development and Dopamine Neurotransmission in Neonatal Rat
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%J JOURNAL OF PROTEOME RESEARCH
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%A Amiour N
%A Recorbet G
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%A Dumas-Gaudot E
%T Mutations in DMI3 and SUNN modify the appressorium-responsive root proteome in arbuscular mycorrhiza
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%J Mol Plant Microbe Interact
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%A Indira T. Kudva
%A Bryan Krastins
%A Haiqing Sheng
%A Robert W. Griffin
%A David A. Sarracino
%A Phillip I. Tarr
%A Carolyn J. Hovde
%A Stephen B. Calderwood
%A Manohar John
%T Proteomics-based Expression Library Screening (PELS): A Novel Method for Rapidly Defining Microbial Immunoproteomes
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%J Mol Cell Proteomics
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%A Raanan A. Miller
%A Erkinjon G. Nazarov
%A Paul Vouros
%T Rapid Separation and Quantitative Analysis of Peptides Using a New Nanoelectrospray- Differential Mobility Spectrometer-Mass Spectrometer System
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%J ANALYTICAL CHEMISTRY
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%A Dirk T. S. Rijkers
%A Jacqueline Cloos
%A Rob M. J. Liskamp
%A Monique Slijper
%A Albert J. R. Heck
%T Investigating the Dynamic Nature of the Interactions between Nuclear Proteins and Histones upon DNA Damage Using an Immobilized Peptide Chemical Proteomics Approach
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%J JOURNAL OF PROTEOME RESEARCH
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%U http://dx.doi.org/10.1021/pr060278b
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%A Karp PD
%T The Pathway Tools cellular overview diagram and Omics Viewer
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%A Marco A. Saraiva
%A Carlos M. Borges
%A M. Helena Floręncio
%T Non-enzymatic model glycation reactions - a comprehensive study of the reactivity of a modified arginine with aldehydic and diketonic dicarbonyl compounds by electrospray mass spectrometry
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%A Sizhi He
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%A Hai Pu
%A Wei Yang
%A Jianguo Ji
%T Proteomic analysis and comparison of the biopsy and autopsy specimen of human brain temporal lobe
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%A Tang H
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%A McIntosh M
%T A statistical method for chromatographic alignment of LC-MS data
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%A Kenneth B Tomer
%A Christoph H Borchers
%T Photoaffinity labeling combined with mass spectrometric approaches as a tool for structural proteomics
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%J Expert Review of Proteomics
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%U http://dx.doi.org/10.1586/14789450.3.4.399
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%A Franzen B
%A Nister M
%T Frozen tissue biobanks. Tissue handling, cryopreservation, extraction, and use for proteomic analysis
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%A Le Thi Tam
%A Haike Antelmann
%A Christine Eymann
%A Dirk Albrecht
%A Jörg Bernhardt
%A Michael Hecker
%T Proteome signatures for stress and starvation in Bacillus subtilis as revealed by a 2-D gel image color coding approach
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%A Robertson ES
%T Proteomic Analysis of the Kaposi's Sarcoma-Associated Herpesvirus Terminal Repeat Element Binding Proteins
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%A Keli Ou
%A Djohan Kesuma
%A Kumaresan Ganesan
%A Kun Yu
%A Sou Yen Soon
%A Suet Ying Lee
%A Xin Pei Goh
%A Michelle Hooi
%A Wei Chen
%A Hiroyuki Jikuya
%A Tetsuo Ichikawa
%A Hiroki Kuyama
%A Ei-ichi Matsuo
%A Osamu Nishimura
%A Patrick Tan
%T Quantitative Profiling of Drug-Associated Proteomic Alterations by Combined 2-Nitrobenzenesulfenyl Chloride (NBS) Isotope Labeling and 2DE/MS Identification
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%J JOURNAL OF PROTEOME RESEARCH
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%A Ralston EJ
%A Yates Iii JR
%A Meyer BJ
%T Sperm chromatin proteomics identifies evolutionarily conserved fertility factors
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%J Nature
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%T Viewing the proteome from oligopeptides and prediction of protein function
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%J Genome Inform
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%A Victor P. Andreev
%A Lingyun Li
%A Tomas Rejtar
%A Qingbo Li
%A James G. Ferry
%A Barry L. Karger
%T New Algorithm for 15N/14N Quantitation with LC-ESI-MS Using an LTQ-FT Mass Spectrometer
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%J JOURNAL OF PROTEOME RESEARCH
%P 2039-2045
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%A Lin WY
%A Song CY
%A Pan TM
%T Proteomic analysis of caco-2 cells treated with monacolin k
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%J J Agric Food Chem
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%A Dariusz Leszczynski
%A Martin L. Meltz
%T Questions and answers concerning applicability of proteomics and transcriptomics in EMF research
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%J PROTEOMICS
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