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Gilbert T1 - A lock-and-key model for protein-protein interactions JO - Bioinformatics Y1 - 2006 SP - 2012 EP - 2019 VL - 22 IS - 16 UR - http://bioinformatics.oxfordjournals.org/cgi/content/abstract/22/16/2012?etoc ER - TY - JOUR A1 - Fushiki T A1 - Fujisawa H A1 - Eguchi S T1 - Identification of biomarkers from mass spectrometry data using a "common" peak approach JO - Y1 - SP - EP - VL - IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=16869977&dopt=Abstract ER - TY - JOUR A1 - Andreas M. Boehm A1 - Albert Sickmann T1 - A comprehensive dictionary of protein accession codes for complete protein accession identifier alias resolving JO - PROTEOMICS Y1 - 2006 SP - 4223 EP - 4226 VL - 6 IS - 15 UR - http://dx.doi.org/10.1002/pmic.200600018 ER - TY - JOUR A1 - Yao H A1 - Mihalek I A1 - Lichtarge O T1 - Rank information: A structure-independent measure of evolutionary trace quality that improves identification of protein functional sites JO - Proteins Y1 - 2006 SP - 111 EP - 23 VL - 65 IS - 1 UR - http://dx.doi.org/10.1002/prot.21101 ER - TY - JOUR A1 - Tadayoshi Fushiki A1 - Hironori Fujisawa and Shinto Eguchi T1 - Identification of biomarkers from mass spectrometry data using a "common" peak approach JO - Y1 - SP - EP - VL - IS - UR - http://dx.doi.org/10.1186/1471-2105-7-358 ER - TY - JOUR A1 - Jones AR A1 - Pizarro A A1 - Spellman P A1 - Miller M T1 - FuGE: Functional Genomics Experiment Object Model JO - OMICS Y1 - 2006 SP - 179 EP - 84 VL - 10 IS - 2 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=16901224&dopt=Abstract ER - TY - JOUR A1 - Hiller K A1 - Grote A A1 - Maneck M A1 - Munch R A1 - Jahn D T1 - JVirGel 2.0: computational prediction of proteomes separated via two dimensional gel electrophoresis under consideration of membrane and secreted proteins JO - Bioinformatics Y1 - 2006 SP - 2441 EP - 3 VL - 22 IS - 19 UR - http://dx.doi.org/10.1093/bioinformatics/btl409 ER - TY - JOUR A1 - Kuo-Chen Chou and Hong-Bin Shen T1 - Predicting Eukaryotic Protein Subcellular Location by Fusing Optimized Evidence-Theoretic K-Nearest Neighbor Classifiers JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2006 SP - 1888 EP - 1897 VL - 5 IS - 8 UR - http://dx.doi.org/10.1021/pr060167c ER - TY - JOUR A1 - Horai H A1 - Doi K A1 - Doi H T1 - Viewing the proteome from oligopeptides and prediction of protein function JO - Genome Inform Y1 - 2005 SP - 174 EP - 82 VL - 16 IS - 2 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=16901100&dopt=Abstract ER - TY - JOUR A1 - Sakharkar MK A1 - Kangueane P A1 - Sakharkar KR A1 - Zhong Z T1 - Huge proteins in the human proteome and their participation in hereditary diseases JO - Y1 - SP - EP - VL - IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=16922691&dopt=Abstract ER - TY - JOUR A1 - Natalie Wielsch A1 - Henrik Thomas A1 - Vineeth Surendranath A1 - Patrice Waridel A1 - Ari Frank A1 - Pavel Pevzner A1 - Andrej Shevchenko T1 - Rapid Validation of Protein Identifications with the Borderline Statistical Confidence via De Novo Sequencing and MS BLAST Searches JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2006 SP - 2448 EP - 2456 VL - 5 IS - 9 UR - http://dx.doi.org/10.1021/pr060200v ER - TY - JOUR A1 - Pan Du A1 - Warren A. 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Prince and Edward M. Marcotte T1 - Chromatographic Alignment of ESI-LC-MS Proteomics Data Sets by Ordered Bijective Interpolated Warping JO - ANALYTICAL CHEMISTRY Y1 - 2006 SP - 6140 EP - 6152 VL - 78 IS - 17 UR - http://dx.doi.org/10.1021/ac0605344 ER - TY - JOUR A1 - Barbara E. Frewen A1 - Gennifer E. Merrihew A1 - Christine C. Wu A1 - William Stafford Noble A1 - Michael J. MacCoss T1 - Analysis of Peptide MS/MS Spectra from Large-Scale Proteomics Experiments Using Spectrum Libraries JO - ANALYTICAL CHEMISTRY Y1 - 2006 SP - 5678 EP - 5684 VL - 78 IS - 16 UR - http://dx.doi.org/10.1021/ac060279n ER - TY - JOUR A1 - Zhi Liang A1 - Meng Xu A1 - Maikun Teng A1 - Liwen Niu T1 - NetAlign: a web-based tool for comparison of protein interaction networks JO - Bioinformatics Y1 - 2006 SP - 2175 EP - 2177 VL - 22 IS - 17 UR - http://bioinformatics.oxfordjournals.org/cgi/content/abstract/22/17/2175?etoc ER - TY - JOUR A1 - James Vlasblom A1 - Samuel Wu A1 - Shuye Pu A1 - Mark Superina A1 - Gina Liu A1 - Chris Orsi A1 - Shoshana J. Wodak T1 - GenePro: a cytoscape plug-in for advanced visualization and analysis of interaction networks JO - Bioinformatics Y1 - 2006 SP - 2178 EP - 2179 VL - 22 IS - 17 UR - http://bioinformatics.oxfordjournals.org/cgi/content/abstract/22/17/2178?etoc ER - TY - JOUR T1 - TOOLbox: PROMPT for comparisons | msInspect | Rapid peptide identifications | MeMo for metabolomics data JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2006 SP - 2072 EP - 2073 VL - 5 IS - 9 UR - http://pubs.acs.org/subscribe/journals/jprobs/5/i09/html/0906toolbox.html ER - TY - JOUR A1 - György Babnigg A1 - Carol S. 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