%A Drake TA
%A Ping P
%T Proteomics approaches to the systems biology of cardiovascular diseases
%0 Journal Article
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%J J Lipid Res
%P 1-8
%V 48
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%A Alberto Bavelloni
%A Irene Faenza
%A Gabriella Cioffi
%A Manuela Piazzi
%A Daniela Parisi
%A Ivan Matic
%A Nadir M. Maraldi
%A Lucio Cocco
%T Proteomic-based analysis of nuclear signaling: PLC?1 affects the expression of the splicing factor SRp20 in Friend erythroleukemia cells
%0 Journal Article
%D 2006
%J PROTEOMICS
%P 5725-5734
%V 6
%N 21
%U http://dx.doi.org/10.1002/pmic.200600318

%A Peng Wu and David W. Grainger
%T Comparison of Hydroxylated Print Additives on Antibody Microarray Performance
%0 Journal Article
%D 2006
%J JOURNAL OF PROTEOME RESEARCH
%P 2956-2965
%V 5
%N 11
%U http://dx.doi.org/10.1021/pr060217d

%A Yi Zhu
%A Rong Wu
%A Navneet Sangha
%A Chul Yoo
%A Kathleen R. Cho
%A Kerby A. Shedden
%A Hidetaka Katabuchi
%A David M. Lubman
%T Classifications of ovarian cancer tissues by proteomic patterns
%0 Journal Article
%D 2006
%J PROTEOMICS
%P 5846-5856
%V 6
%N 21
%U http://dx.doi.org/10.1002/pmic.200600165

%A Corinne Cayatte
%A Catherine Pons
%A Jean-Marie Guigonis
%A Jerome Pizzol
%A Laetitia Elies
%A Philippe Kennel
%A David Rouquie
%A Remi Bars
%A Bernard Rossi
%A Michel Samson
%T Protein Profiling of Rat Ventral Prostate following Chronic Finasteride Administration: Identification and Localization of a Novel Putative Androgen-regulated Protein
%0 Journal Article
%D 2006
%J Mol Cell Proteomics
%P 2031-2043
%V 5
%N 11
%U http://www.mcponline.org/cgi/content/abstract/5/11/2031?etoc

%A Heidi Hoi-Yee Ngai
%A Wai-Hung Sit
%A Ping-Ping Jiang
%A Ruo-Jun Xu
%A Jennifer Man-Fan Wan
%A Visith Thongboonkerd
%T Serial Changes in Urinary Proteome Profile of Membranous Nephropathy: Implications for Pathophysiology and Biomarker Discovery
%0 Journal Article
%D 2006
%J JOURNAL OF PROTEOME RESEARCH
%P 3038-3047
%V 5
%N 11
%U http://dx.doi.org/10.1021/pr060122b

%A O'Gorman D
%A Howard JC
%A Varallo VM
%A Cadieux P
%A Bowley E
%A McLean K
%A Pak BJ
%A Gan BS
%T Identification of protein biomarkers in Dupuytren's contracture using surface enhanced laser desorption ionization time-of-flight mass spectrometry (SELDI-TOF-MS)
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%D 2006
%J Clin Invest Med
%P 136-45
%V 29
%N 3
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17058431&dopt=Abstract

%A M. D. Mostaqul Huq
%A Pawan Gupta
%A Nien-Pei Tsai
%A Li-Na Wei
%T Modulation of Testicular Receptor 4 Activity by Mitogen-activated Protein Kinase-mediated Phosphorylation
%0 Journal Article
%D 2006
%J Mol Cell Proteomics
%P 2072-2082
%V 5
%N 11
%U http://www.mcponline.org/cgi/content/abstract/5/11/2072?etoc

%A Ward DG
%A Cheng Y
%A N'kontchou G
%A Thar TT
%A Barget N
%A Wei W
%A Martin A
%A Beaugrand M
%A Johnson PJ
%T Preclinical and post-treatment changes in the HCC-associated serum proteome
%0 Journal Article
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%J Br J Cancer
%P 1379-83
%V 95
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%U http://dx.doi.org/10.1038/sj.bjc.6603429

%A Sultana R
%A Perluigi M
%A Butterfield DA
%T Protein oxidation and lipid peroxidation in brain of subjects with Alzheimer's disease: insights into mechanism of neurodegeneration from redox proteomics
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%J Antioxid Redox Signal
%P 2021-37
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%A Fuentes M
%A Mateo C
%A Pessela BC
%A Batalla P
%A Fernandez-Lafuente R
%A Guisan JM
%T Solid phase proteomics: Dramatic reinforcement of very weak protein-protein interactions
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%A Edita Sostaric
%A Aristophanes S. Georgiou
%A Chi H. Wong
%A Paul F. Watson
%A William V. Holt
%A Alireza Fazeli
%T Global Profiling of Surface Plasma Membrane Proteome of Oviductal Epithelial Cells
%0 Journal Article
%D 2006
%J JOURNAL OF PROTEOME RESEARCH
%P 3029-3037
%V 5
%N 11
%U http://dx.doi.org/10.1021/pr060366w

%A Garcia JS
%A Gratao PL
%A Azevedo RA
%A Arruda MA
%T Metal Contamination Effects on Sunflower (Helianthus annuus L.) Growth and Protein Expression in Leaves During Development
%0 Journal Article
%D 2006
%J J Agric Food Chem
%P 8623-8630
%V 54
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%A England K
%A 'driscoll CO
%A Cotter TG
%T ROS and protein oxidation in early stages of cytotoxic drug induced apoptosis
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%D 2006
%J Free Radic Res
%P 1124-37
%V 40
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%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17050166&dopt=Abstract

%A Kim K. Hixson
%A Joshua N. Adkins
%A Scott E. Baker
%A Ronald J. Moore
%A Brett A. Chromy
%A Richard D. Smith
%A Sandra L. McCutchen-Maloney
%A Mary S. Lipton
%T Biomarker Candidate Identification in Yersinia pestis Using Organism-Wide Semiquantitative Proteomics
%0 Journal Article
%D 2006
%J JOURNAL OF PROTEOME RESEARCH
%P 3008-3017
%V 5
%N 11
%U http://dx.doi.org/10.1021/pr060179y

%A Tannu NS
%A Hemby SE
%T Chapter 3 Methods for proteomics in neuroscience
%0 Journal Article
%D 2006
%J Prog Brain Res
%P 41-82
%V 158
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%A Angelucci S
%A Ciavardelli D
%A Di Giuseppe F
%A Eleuterio E
%A Sulpizio M
%A Tiboni GM
%A Giampietro F
%A Palumbo P
%A Di Ilio C
%T Proteome analysis of human follicular fluid
%0 Journal Article
%D 2006
%J Biochim Biophys Acta
%P 1775-85
%V 1764
%N 11
%U http://dx.doi.org/10.1016/j.bbapap.2006.09.001

%A David Clifford
%A Michael Buckley
%A Kim Y. C. Fung
%A Leah Cosgrove
%T Interactive Feature Finding in Liquid Chromatography Mass Spectrometry Data
%0 Journal Article
%D 2006
%J JOURNAL OF PROTEOME RESEARCH
%P 3179-3185
%V 5
%N 11
%U http://dx.doi.org/10.1021/pr060226m

%A Tibes R
%A Qiu Y
%A Lu Y
%A Hennessy B
%A Andreeff M
%A Mills GB
%A Kornblau SM
%T Reverse phase protein array: validation of a novel proteomic technology and utility for analysis of primary leukemia specimens and hematopoietic stem cells
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%J Mol Cancer Ther
%P 2512-21
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%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17041095&dopt=Abstract

%A Richard L. Beardsley
%A William E. Running
%A James P. Reilly
%T Probing the Structure of the Caulobacter crescentus Ribosome with Chemical Labeling and Mass Spectrometry
%0 Journal Article
%D 2006
%J JOURNAL OF PROTEOME RESEARCH
%P 2935-2946
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%N 11
%U http://dx.doi.org/10.1021/pr060170w

%A Buerke M
%A Schwertz H
%A Langin T
%A Buerke U
%A Prondzinsky R
%A Platsch H
%A Richert J
%A Bomm S
%A Schmidt M
%A Hillen H
%A Lindemann S
%A Blaschke G
%A Muller-Werdan U
%A Werdan K
%T Proteome analysis of myocardial tissue following ischemia and reperfusion-Effects of complement inhibition
%0 Journal Article
%D 2006
%J Biochim Biophys Acta
%P 1536-45
%V 1764
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%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17045855&dopt=Abstract

%A Spangenberg HC
%A Thimme R
%A Blum HE
%T Serum markers of hepatocellular carcinoma
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%J Semin Liver Dis
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%V 26
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%A King N
%A Deutsch E
%A Ranish J
%A Nesvizhskii A
%A Eddes J
%A Mallick P
%A Eng J
%A Desiere F
%A Flory M
%A Martin D
%A Kim B
%A Lee H
%A Raught B
%A Aebersold R
%T Analysis of the S. cerevisiae proteome with PeptideAtlas
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%A Burckstummer T
%A Bennett KL
%A Preradovic A
%A Schutze G
%A Hantschel O
%A Superti-Furga G
%A Bauch A
%T An efficient tandem affinity purification procedure for interaction proteomics in mammalian cells
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%J Nat Methods
%P 1013-9
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%N 12
%U http://dx.doi.org/10.1038/nmeth968

%A Minoru Yamaguchi
%A Mutsumi Oka
%A Kimiko Nishida
%A Mayu Ishida
%A Ayako Hamazaki
%A Hiroki Kuyama
%A Eiji Ando
%A Taka-aki Okamura
%A Norikazu Ueyama
%A Shigemi Norioka
%A Osamu Nishimura
%A Susumu Tsunasawa
%A Takashi Nakazawa
%T Enhancement of MALDI-MS Spectra of C-Terminal Peptides by the Modification of Proteins via an Active Ester Generated in Situ from an Oxazolone
%0 Journal Article
%D 2006
%J ANALYTICAL CHEMISTRY
%P 7861-7869
%V 78
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%U http://dx.doi.org/10.1021/ac0610816

%A Cepek L
%A Brechlin P
%A Steinacker P
%A Mollenhauer B
%A Klingebiel E
%A Bibl M
%A Kretzschmar HA
%A Wiltfang J
%A Otto M
%T Proteomic Analysis of the Cerebrospinal Fluid of Patients with Creutzfeldt-Jakob Disease
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%J Dement Geriatr Cogn Disord
%P 22-28
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%A Qian Shi
%A Lyndsay N. Harris
%A Xin Lu
%A Xiaochun Li
%A Justin Hwang
%A Robert Gentleman
%A J. Dirk Iglehart
%A Alexander Miron
%T Declining Plasma Fibrinogen Alpha Fragment Identifies HER2-Positive Breast Cancer Patients and Reverts to Normal Levels after Surgery
%0 Journal Article
%D 2006
%J JOURNAL OF PROTEOME RESEARCH
%P 2947-2955
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%N 11
%U http://dx.doi.org/10.1021/pr060099u

%A Bing Zhang
%A Nathan C. VerBerkmoes
%A Michael A. Langston
%A Edward Uberbacher
%A Robert L. Hettich
%A Nagiza F. Samatova
%T Detecting Differential and Correlated Protein Expression in Label-Free Shotgun Proteomics
%0 Journal Article
%D 2006
%J JOURNAL OF PROTEOME RESEARCH
%P 2909-2918
%V 5
%N 11
%U http://dx.doi.org/10.1021/pr0600273

%A Chunling Wan
%A Yifeng Yang
%A Huafang Li
%A Yujuan La
%A Hui Zhu
%A Lei Jiang
%A Yongshuo Chen
%A Guoyin Feng
%A Lin He
%T Dysregulation of Retinoid Transporters Expression in Body Fluids of Schizophrenia Patients
%0 Journal Article
%D 2006
%J JOURNAL OF PROTEOME RESEARCH
%P 3213-3216
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%N 11
%U http://dx.doi.org/10.1021/pr060176l

%A Ji QC
%A Rodila R
%A El-Shourbagy TA
%T A sample preparation process for LC-MS/MS analysis of total protein drug concentrations in monkey plasma samples with antibody
%0 Journal Article
%D 2007
%J J Chromatogr B Analyt Technol Biomed Life Sci
%P 133-41
%V 847
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%U http://dx.doi.org/10.1016/j.jchromb.2006.09.039

%A Vincent Castronovo
%A David Waltregny
%A Philippe Kischel
%A Christoph Roesli
%A Giuliano Elia
%A Jascha-N. Rybak
%A Dario Neri
%T A Chemical Proteomics Approach for the Identification of Accessible Antigens Expressed in Human Kidney Cancer
%0 Journal Article
%D 2006
%J Mol Cell Proteomics
%P 2083-2091
%V 5
%N 11
%U http://www.mcponline.org/cgi/content/abstract/5/11/2083?etoc

%A Freire SL
%A Wheeler AR
%T Proteome-on-a-chip: Mirage, or on the horizon?
%0 Journal Article
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%J Lab Chip
%P 1415-23
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%A Edwin Ho
%A Andrew Hayen
%A Marc R. Wilkins
%T Characterisation of organellar proteomes: A guide to subcellular proteomic fractionation and analysis
%0 Journal Article
%D 2006
%J PROTEOMICS
%P 5746-5757
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%N 21
%U http://dx.doi.org/10.1002/pmic.200600241

%A Mario Cindri 
%A Laura Bindila
%A Tina epo
%A Jasna Peter-Katalini
%T Mass Spectrometry-Based Glycoproteomic Approach Involving Lysine Derivatization for Structural Characterization of Recombinant Human Erythropoietin
%0 Journal Article
%D 2006
%J JOURNAL OF PROTEOME RESEARCH
%P 3066-3076
%V 5
%N 11
%U http://dx.doi.org/10.1021/pr060177d

%A Webster MJ
%T Chapter 1 Tissue preparation and banking
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%D 2006
%J Prog Brain Res
%P 3-14
%V 158
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%A Marguiles AG
%A Klimberg VS
%A Bhattacharrya S
%A Gaddy D
%A Suva LJ
%T Genomics and Proteomics of Bone Cancer
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%D 2006
%J Clin Cancer Res
%P 6217s-6221s
%V 12
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%A Mosley K
%A Tam FW
%A Edwards RJ
%A Crozier J
%A Pusey CD
%A Lightstone L
%T Urinary proteomic profiles distinguish between active and inactive lupus nephritis
%0 Journal Article
%D 2006
%J Rheumatology (Oxford)
%P 1497-504
%V 45
%N 12
%U http://dx.doi.org/10.1093/rheumatology/kel351

%A Si-Gui Zhou
%A Shu-Feng Zhou
%A He-Qing Huang
%A Jian-Wen Chen
%A Min Huang
%A Pei-Qing Liu
%T Proteomic Analysis of Hypertrophied Myocardial Protein Patterns in Renovascularly Hypertensive and Spontaneously Hypertensive Rats
%0 Journal Article
%D 2006
%J JOURNAL OF PROTEOME RESEARCH
%P 2901-2908
%V 5
%N 11
%U http://dx.doi.org/10.1021/pr050456l

%A Zhi Dai
%A Yin-Kun Liu
%A Jie-Feng Cui
%A Hua-Li Shen
%A Jie Chen
%A Rui-Xia Sun
%A Yu Zhang
%A Xin-Wen Zhou
%A Peng-Yuan Yang
%A Zhao-You Tang
%T Identification and analysis of altered ?1,6-fucosylated glycoproteins associated with hepatocellular carcinoma metastasis
%0 Journal Article
%D 2006
%J PROTEOMICS
%P 5857-5867
%V 6
%N 21
%U http://dx.doi.org/10.1002/pmic.200500707

%A Jun-yong Jia
%A Stephanie Lamer
%A Michael Schumann
%A Michael R. Schmidt
%A Eberhard Krause
%A Volker Haucke
%T Quantitative Proteomics Analysis of Detergent-resistant Membranes from Chemical Synapses: Evidence for Cholesterol as Spatial Organizer of Synaptic Vesicle Cycling
%0 Journal Article
%D 2006
%J Mol Cell Proteomics
%P 2060-2071
%V 5
%N 11
%U http://www.mcponline.org/cgi/content/abstract/5/11/2060?etoc

%A Vitaly Kochin
%A Susumu Y. Imanishi
%A John E. Eriksson
%T Fast track to a phosphoprotein sketch - MALDI-TOF characterization of TLC-based tryptic phosphopeptide maps at femtomolar detection sensitivity
%0 Journal Article
%D 2006
%J PROTEOMICS
%P 5676-5682
%V 6
%N 21
%U http://dx.doi.org/10.1002/pmic.200600457

%A An Chi
%A Julio C. Valencia
%A Zhang-Zhi Hu
%A Hidenori Watabe
%A Hiroshi Yamaguchi
%A Nancy J. Mangini
%A Hongzhan Huang
%A Victor A. Canfield
%A Keith C. Cheng
%A Feng Yang
%A Riichiro Abe
%A Shoichi Yamagishi
%A Jeffrey Shabanowitz
%A Vincent J. Hearing
%A Cathy Wu
%A Ettore Appell
%T Proteomic and Bioinformatic Characterization of the Biogenesis and Function of Melanosomes
%0 Journal Article
%D 2006
%J JOURNAL OF PROTEOME RESEARCH
%P 3135-3144
%V 5
%N 11
%U http://dx.doi.org/10.1021/pr060363j

%A Hong Wang and David L. Brautigan
%T Peptide Microarray Analysis of Substrate Specificity of the Transmembrane Ser/Thr Kinase KPI-2 Reveals Reactivity with Cystic Fibrosis Transmembrane Conductance Regulator and Phosphorylase
%0 Journal Article
%D 2006
%J Mol Cell Proteomics
%P 2124-2130
%V 5
%N 11
%U http://www.mcponline.org/cgi/content/abstract/5/11/2124?etoc

%A Tao Liu
%A Wei-Jun Qian
%A Heather M. Mottaz
%A Marina A. Gritsenko
%A Angela D. Norbeck
%A Ronald J. Moore
%A Samuel O. Purvine
%A David G. Camp
%A II
%A Richard D. Smith
%T Evaluation of Multiprotein Immunoaffinity Subtraction for Plasma Proteomics and Candidate Biomarker Discovery Using Mass Spectrometry
%0 Journal Article
%D 2006
%J Mol Cell Proteomics
%P 2167-2174
%V 5
%N 11
%U http://www.mcponline.org/cgi/content/abstract/5/11/2167?etoc

%A Wuhrer M
%A Catalina MI
%A Deelder AM
%A Hokke CH
%T Glycoproteomics based on tandem mass spectrometry of glycopeptides
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%A Chun-Ming Huang
%A Chao-Cheng Wang
%A Stephen Barnes
%A Craig A. Elmets
%T In vivo detection of secreted proteins from wounded skin using capillary ultrafiltration probes and mass spectrometric proteomics
%0 Journal Article
%D 2006
%J PROTEOMICS
%P 5805-5814
%V 6
%N 21
%U http://dx.doi.org/10.1002/pmic.200600163

%A van der Burgt YE
%A Taban IM
%A Konijnenburg M
%A Biskup M
%A Duursma MC
%A Heeren RM
%A Rompp A
%A van Nieuwpoort RV
%A Bal HE
%T Parallel Processing of Large Datasets from NanoLC-FTICR-MS Measurements
%0 Journal Article
%D 2007
%J J Am Soc Mass Spectrom
%P 152-61
%V 18
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%U http://dx.doi.org/10.1016/j.jasms.2006.09.005

%A Zhang L
%A Wang LS
%A Xu Y
%A Xia L
%A Chen WL
%A Zheng Y
%A Chen GQ
%T Comparative proteomic analysis of human leukemic cells with and without inducible expression of leukemogenic AML1-ETO protein
%0 Journal Article
%D 2006
%J Chin J Physiol
%P 182-91
%V 49
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%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17058450&dopt=Abstract

%A Xue Gu
%A Chunhui Deng
%A Guoquan Yan
%A Xiangmin Zhang
%T Capillary Array Reversed-Phase Liquid Chromatography-Based Multidimensional Separation System Coupled with MALDI-TOF-TOF-MS Detection for High-Throughput Proteome Analysis
%0 Journal Article
%D 2006
%J JOURNAL OF PROTEOME RESEARCH
%P 3186-3196
%V 5
%N 11
%U http://dx.doi.org/10.1021/pr0602592

%A Sang Woo Kim
%A Hye Jin Hwang
%A Eun Jae Cho
%A Jung Young Oh
%A Yu-Mi Baek
%A Jang Won Choi
%A Jong Won Yun
%T Time-Dependent Plasma Protein Changes in Streptozotocin-Induced Diabetic Rats before and after Fungal Polysaccharide Treatments
%0 Journal Article
%D 2006
%J JOURNAL OF PROTEOME RESEARCH
%P 2966-2976
%V 5
%N 11
%U http://dx.doi.org/10.1021/pr0602601

%A Grassl J
%A Morishita M
%A Lewis PD
%A Leonard RC
%A Thomas G
%T Profiling the breast cancer proteome--the new tool of the future?
%0 Journal Article
%D 2006
%J Clin Oncol (R Coll Radiol)
%P 581-6
%V 18
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%A Angel PM
%A Orlando R
%T Trypsin is the primary mechanism by which the (18)O isotopic label is lost in quantitative proteomic studies
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%J Anal Biochem
%P 26-34
%V 359
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%U http://dx.doi.org/10.1016/j.ab.2006.08.036

%A Van C. Kelly
%A Sulee Kuy
%A David J. Palmer
%A Zhenzhong Xu
%A Stephen R. Davis
%A Garth J. Cooper
%T Characterization of bovine seminal plasma by proteomics
%0 Journal Article
%D 2006
%J PROTEOMICS
%P 5826-5833
%V 6
%N 21
%U http://dx.doi.org/10.1002/pmic.200500830

%A Song K
%A Hanash S
%T Unraveling the Complex Proteome for Biomarker Discovery in Gastrointestinal and Liver Diseases
%0 Journal Article
%D 2006
%J Gastroenterology
%P 1375-8
%V 131
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%U http://dx.doi.org/10.1053/j.gastro.2006.09.025

%A Robert Leslie James Graham
%A Catherine E. Pollock
%A S. Naomi O'Loughlin
%A Nigel G. Ternan
%A D. Brent Weatherly
%A Philip J. Jackson
%A Rick L. Tarleton
%A Geoff McMullan
%T Multidimensional Proteomic Analysis of the Soluble Subproteome of the Emerging Nosocomial Pathogen Ochrobactrum anthropi
%0 Journal Article
%D 2006
%J JOURNAL OF PROTEOME RESEARCH
%P 3145-3153
%V 5
%N 11
%U http://dx.doi.org/10.1021/pr060293g

%A Kareem L. Graham
%A Maria Vaysberg
%A Annie Kuo
%A Paul J. Utz
%T Autoantigen arrays for multiplex analysis of antibody isotypes
%0 Journal Article
%D 2006
%J PROTEOMICS
%P 5720-5724
%V 6
%N 21
%U http://dx.doi.org/10.1002/pmic.200600345

%A Zhu X
%A Gerstein M
%A Snyder M
%T ProCAT: a data analysis approach for protein microarrays
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%A Lee DH
%A Kim SG
%A Park YC
%A Nam SW
%A Lee KH
%A Seo JH
%T Proteome analysis of recombinant Escherichia coli producing human glucagon-like peptide-1
%0 Journal Article
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%U http://dx.doi.org/10.1016/j.jchromb.2006.09.042

%A Gevaert K
%A Van Damme P
%A Ghesquiere B
%A Vandekerckhove J
%T Protein processing and other modifications analyzed by diagonal peptide chromatography
%0 Journal Article
%D 2006
%J Biochim Biophys Acta
%P 1801-10
%V 1764
%N 12
%U http://dx.doi.org/10.1016/j.bbapap.2006.09.003

%A Wei-Fei Diao
%A Wei-Qiang Chen
%A Yuanyuan Wu
%A Peng Liu
%A Xiao-Lei Xie
%A Shuai Li
%A Ping-Ping Shen
%A Jianguo Ji
%T Serum, liver, and kidney proteomic analysis for the alloxan-induced type I diabetic mice after insulin gene transfer of naked plasmid through electroporation
%0 Journal Article
%D 2006
%J PROTEOMICS
%P 5837-5845
%V 6
%N 21
%U http://dx.doi.org/10.1002/pmic.200500697

%A R. Hussain Butt
%A Maggie W. Y. Lee
%A S. Ahmadi Pirshahid
%A Peter S. Backlund,<SUP>O</SUP> Stephen Wood
%A Jens R. Coorssen
%T An Initial Proteomic Analysis of Human Preterm Labor: Placental Membranes
%0 Journal Article
%D 2006
%J JOURNAL OF PROTEOME RESEARCH
%P 3161-3172
%V 5
%N 11
%U http://dx.doi.org/10.1021/pr060282n

%A Ganesh Kumar Agrawal and Jay J. Thelen
%T Large Scale Identification and Quantitative Profiling of Phosphoproteins Expressed during Seed Filling in Oilseed Rape
%0 Journal Article
%D 2006
%J Mol Cell Proteomics
%P 2044-2059
%V 5
%N 11
%U http://www.mcponline.org/cgi/content/abstract/5/11/2044?etoc

%A Hiba El Hajj
%A Emmanuelle Demey
%A Joël Poncet
%A Maryse Lebrun
%A Bo Wu
%A Nathalie Galéotti
%A Marie Noëlle Fourmaux
%A Odile Mercereau-Puijalon
%A Henri Vial
%A Gilles Labesse
%A Jean François Dubremetz
%T The ROP2 family of Toxoplasma gondii rhoptry proteins: Proteomic and genomic characterization and molecular modeling
%0 Journal Article
%D 2006
%J PROTEOMICS
%P 5773-5784
%V 6
%N 21
%U http://dx.doi.org/10.1002/pmic.200600187

%A Daniel Blanchard
%A Harald Hutter
%A Jamie Fleenor
%A Andrew Fire
%T A Differential Cytolocalization Assay for Analysis of Macromolecular Assemblies in the Eukaryotic Cytoplasm
%0 Journal Article
%D 2006
%J Mol Cell Proteomics
%P 2175-2184
%V 5
%N 11
%U http://www.mcponline.org/cgi/content/abstract/5/11/2175?etoc

%A Xu C
%A Garrett WM
%A Sullivan J
%A Caperna TJ
%A Natarajan S
%T Separation and identification of soybean leaf proteins by two-dimensional gel electrophoresis and mass spectrometry
%0 Journal Article
%D 2006
%J Phytochemistry
%P 2431-40
%V 67
%N 22
%U http://dx.doi.org/10.1016/j.phytochem.2006.09.002

%A Zsuzsanna Doszt nyi
%A Jake Chen
%A A. Keith Dunker
%A Istv n Simon
%A Peter Tompa
%T Disorder and Sequence Repeats in Hub Proteins and Their Implications for Network Evolution
%0 Journal Article
%D 2006
%J JOURNAL OF PROTEOME RESEARCH
%P 2985-2995
%V 5
%N 11
%U http://dx.doi.org/10.1021/pr060171o

%A Chunguang G. Yang
%A Stephen J. Granite
%A Jennifer E. Van Eyk
%A Raimond L. Winslow
%T MASCOT HTML and XML parser: An implementation of a novel object model for protein identification data
%0 Journal Article
%D 2006
%J PROTEOMICS
%P 5688-5693
%V 6
%N 21
%U http://dx.doi.org/10.1002/pmic.200600157

%A Plumb RS
%A Rainville P
%A Smith BW
%A Johnson KA
%A Castro-Perez J
%A Wilson ID
%A Nicholson JK
%T Generation of Ultrahigh Peak Capacity LC Separations via Elevated Temperatures and High Linear Mobile-Phase Velocities
%0 Journal Article
%D 2006
%J Anal Chem
%P 7278-7283
%V 78
%N 20
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17037933&dopt=Abstract

%A Carroll J
%A Fearnley IM
%A Walker JE
%T Definition of the mitochondrial proteome by measurement of molecular masses of membrane proteins
%0 Journal Article
%D 2006
%J Proc Natl Acad Sci U S A
%P 16170-5
%V 103
%N 44
%U http://dx.doi.org/10.1073/pnas.0607719103

%A Joko Prayitno
%A Nijat Imin
%A Barry G. Rolfe
%A Ulrike Mathesius
%T Identification of Ethylene-Mediated Protein Changes during Nodulation in Medicago truncatula Using Proteome Analysis
%0 Journal Article
%D 2006
%J JOURNAL OF PROTEOME RESEARCH
%P 3084-3095
%V 5
%N 11
%U http://dx.doi.org/10.1021/pr0602646

%A Laukens K
%A Matthiesen R
%A Lemiere F
%A Esmans E
%A Van Onckelen H
%A Jensen ON
%A Witters E
%T Integration of gel-based proteome data with pProRep
%0 Journal Article
%D 2006
%J Bioinformatics
%P 2838-40
%V 22
%N 22
%U http://dx.doi.org/10.1093/bioinformatics/btl487

%A Reynolds JL
%A Mahajan SD
%A Bindukumar B
%A Sykes D
%A Schwartz SA
%A Nair MP
%T Proteomic analysis of the effects of cocaine on the enhancement of HIV-1 replication in normal human astrocytes (NHA)
%0 Journal Article
%D 2006
%J Brain Res
%P 226-36
%V 1123
%N 1
%U http://dx.doi.org/10.1016/j.brainres.2006.09.034

%A Baptiste Leroy
%A Gerard Toubeau
%A Paul Falmagne
%A Ruddy Wattiez
%T Identification and Characterization of New Protein Chemoattractants in the Frog Skin Secretome
%0 Journal Article
%D 2006
%J Mol Cell Proteomics
%P 2114-2123
%V 5
%N 11
%U http://www.mcponline.org/cgi/content/abstract/5/11/2114?etoc

%A Coldham NG
%A Randall LP
%A Piddock LJ
%A Woodward MJ
%T Effect of fluoroquinolone exposure on the proteome of Salmonella enterica serovar Typhimurium
%0 Journal Article
%D 2006
%J J Antimicrob Chemother
%P 1145-53
%V 58
%N 6
%U http://dx.doi.org/10.1093/jac/dkl413

%A Zahedi RP
%A Begonja AJ
%A Gambaryan S
%A Sickmann A
%T Phosphoproteomics of human platelets: A quest for novel activation pathways
%0 Journal Article
%D 2006
%J Biochim Biophys Acta
%P 1963-76
%V 1764
%N 12
%U http://dx.doi.org/10.1016/j.bbapap.2006.08.017

%A Oleg V. Krokhin
%T Sequence-Specific Retention Calculator. Algorithm for Peptide Retention Prediction in Ion-Pair RP-HPLC: Application to 300- and 100-&Aring; Pore Size C18 Sorbents
%0 Journal Article
%D 2006
%J ANALYTICAL CHEMISTRY
%P 7785-7795
%V 78
%N 22
%U http://dx.doi.org/10.1021/ac060777w

%A Weinkauf M
%A Hiddemann W
%A Dreyling M
%T Sample pooling in 2-D gel electrophoresis: A new approach to reduce nonspecific expression background
%0 Journal Article
%D 2006
%J Electrophoresis
%P 4555-8
%V 27
%N 22
%U http://dx.doi.org/10.1002/elps.200600207

%A Megumi Hato
%A Hiroaki Nakagawa
%A Masaki Kurogochi
%A Tomoya O. Akama
%A Jamey D. Marth
%A Michiko N. Fukuda
%A Shin-Ichiro Nishimura
%T Unusual N-Glycan Structures in {alpha}-Mannosidase II/IIx Double Null Embryos Identified by a Systematic Glycomics Approach Based on Two-dimensional LC Mapping and Matrix-dependent Selective Fragmentation Method in MALDI-TOF/TOF Mass Spectrometry
%0 Journal Article
%D 2006
%J Mol Cell Proteomics
%P 2146-2157
%V 5
%N 11
%U http://www.mcponline.org/cgi/content/abstract/5/11/2146?etoc

%A Noble J
%A Dua RS
%A Locke I
%A Eeles R
%A Gui GP
%A Isacke CM
%T Proteomic analysis of nipple aspirate fluid throughout the menstrual cycle in healthy pre-menopausal women
%0 Journal Article
%D 
%J 
%P -
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%U http://dx.doi.org/10.1007/s10549-006-9402-x

%A Li C
%A Gawandi V
%A Protos A
%A Phillips RS
%A Amster IJ
%T A matrix-assisted laser desorption/ionization compatible reagent for tagging tryptophan residues
%0 Journal Article
%D 2006
%J Eur J Mass Spectrom (Chichester Eng)
%P 213-21
%V 12
%N 4
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17057278&dopt=Abstract

%A Luke H. Stockwin
%A Josip Blonder
%A Maja A. Bumke
%A David A. Lucas
%A King C. Chan
%A Thomas P. Conrads
%A Haleem J. Issaq
%A Timothy D. Veenstra
%A Dianne L. Newton
%A Susanna M. Rybak
%T Proteomic Analysis of Plasma Membrane from Hypoxia-Adapted Malignant Melanoma
%0 Journal Article
%D 2006
%J JOURNAL OF PROTEOME RESEARCH
%P 2996-3007
%V 5
%N 11
%U http://dx.doi.org/10.1021/pr0601739

%A Ming-Jiun Yu
%A Trairak Pisitkun
%A Guanghui Wang
%A Rong-Fong Shen
%A Mark A. Knepper
%T LC-MS/MS Analysis of Apical and Basolateral Plasma Membranes of Rat Renal Collecting Duct Cells
%0 Journal Article
%D 2006
%J Mol Cell Proteomics
%P 2131-2145
%V 5
%N 11
%U http://www.mcponline.org/cgi/content/abstract/5/11/2131?etoc

%A D. C. Anderson
%A Elsie L. Campbell
%A John C. Meeks
%T A Soluble 3D LC/MS/MS Proteome of the Filamentous Cyanobacterium Nostoc punctiforme
%0 Journal Article
%D 2006
%J JOURNAL OF PROTEOME RESEARCH
%P 3096-3104
%V 5
%N 11
%U http://dx.doi.org/10.1021/pr060272m

%A Taverna F
%A Negri A
%A Piccinini R
%A Zecconi A
%A Nonnis S
%A Ronchi S
%A Tedeschi G
%T Characterization of cell wall associated proteins of a Staphylococcus aureus isolated from bovine mastitis case by a proteomic approach
%0 Journal Article
%D 2007
%J Vet Microbiol
%P 240-7
%V 119
%N 2-4
%U http://dx.doi.org/10.1016/j.vetmic.2006.09.007

%A Atsushi Morita
%A Etsuko Miyagi
%A Hidetaro Yasumitsu
%A Hiroshi Kawasaki
%A Hisashi Hirano
%A Fumiki Hirahara
%T Proteomic search for potential diagnostic markers and therapeutic targets for ovarian clear cell adenocarcinoma
%0 Journal Article
%D 2006
%J PROTEOMICS
%P 5880-5890
%V 6
%N 21
%U http://dx.doi.org/10.1002/pmic.200500708

%A Lesley A. Kane
%A Christina K. Yung
%A Giulio Agnetti
%A Irina Neverova
%A Jennifer E. Van Eyk
%T Optimization of paper bridge loading for 2-DE analysis in the basic pH region: Application to the mitochondrial subproteome
%0 Journal Article
%D 2006
%J PROTEOMICS
%P 5683-5687
%V 6
%N 21
%U http://dx.doi.org/10.1002/pmic.200600267

%A Markus Roessler
%A Wolfgang Rollinger
%A Liliana Mantovani-Endl
%A Marie-Luise Hagmann
%A Stefan Palme
%A Peter Berndt
%A Alfred M. Engel
%A Michael Pfeffer
%A Johann Karl
%A Heinz Bodenmuller
%A Josef Ruschoff
%A Thomas Henkel
%A Gerhard Rohr
%A Siegbert Rossol
%A Wolfgang Rosch
%A H
%T Identification of PSME3 as a Novel Serum Tumor Marker for Colorectal Cancer by Combining Two-dimensional Polyacrylamide Gel Electrophoresis with a Strictly Mass Spectrometry-based Approach for Data Analysis
%0 Journal Article
%D 2006
%J Mol Cell Proteomics
%P 2092-2101
%V 5
%N 11
%U http://www.mcponline.org/cgi/content/abstract/5/11/2092?etoc

%A Radovan Hynek
%A Birte Svensson
%A Ole N rregaard Jensen
%A Vibeke Barkholt
%A Christine Finnie
%T Enrichment and Identification of Integral Membrane Proteins from Barley Aleurone Layers by Reversed-Phase Chromatography, SDS-PAGE, and LC-MS/MS
%0 Journal Article
%D 2006
%J JOURNAL OF PROTEOME RESEARCH
%P 3105-3113
%V 5
%N 11
%U http://dx.doi.org/10.1021/pr0602850

%A Chensong Pan
%A Mingliang Ye
%A Yuge Liu
%A Shun Feng
%A Xiaogang Jiang
%A Guanghui Han
%A Junjie Zhu
%A Hanfa Zou
%T Enrichment of Phosphopeptides by Fe3+-Immobilized Mesoporous Nanoparticles of MCM-41 for MALDI and Nano-LC-MS/MS Analysis
%0 Journal Article
%D 2006
%J JOURNAL OF PROTEOME RESEARCH
%P 3114-3124
%V 5
%N 11
%U http://dx.doi.org/10.1021/pr0600125

%A Sergey Pevtsov
%A Irina Fedulova
%A Hamid Mirzaei
%A Charles Buck
%A Xiang Zhang
%T Performance Evaluation of Existing De Novo Sequencing Algorithms
%0 Journal Article
%D 2006
%J JOURNAL OF PROTEOME RESEARCH
%P 3018-3028
%V 5
%N 11
%U http://dx.doi.org/10.1021/pr060222h

%A Zhouxin Shen
%A Elizabeth J. Want
%A Wei Chen
%A William Keating
%A William Nussbaumer
%A Richard Moore
%A Thomas M. Gentle
%A Gary Siuzdak
%T Sepsis Plasma Protein Profiling with Immunodepletion, Three-Dimensional Liquid Chromatography Tandem Mass Spectrometry, and Spectrum Counting
%0 Journal Article
%D 2006
%J JOURNAL OF PROTEOME RESEARCH
%P 3154-3160
%V 5
%N 11
%U http://dx.doi.org/10.1021/pr060327k

%A Roux MM
%A Townley IK
%A Raisch M
%A Reade A
%A Bradham C
%A Humphreys G
%A Gunaratne HJ
%A Killian CE
%A Moy G
%A Su YH
%A Ettensohn CA
%A Wilt F
%A Vacquier VD
%A Burke RD
%A Wessel G
%A Foltz KR
%T A functional genomic and proteomic perspective of sea urchin calcium signaling and egg activation
%0 Journal Article
%D 2006
%J Dev Biol
%P 416-33
%V 300
%N 1
%U http://dx.doi.org/10.1016/j.ydbio.2006.09.006

%A Elisabet Carlsohn
%A Johanna Nystr&ouml;m
%A Hasse Karlsson
%A Ann-Mari Svennerholm
%A Carol L. Nilsson
%T Characterization of the Outer Membrane Protein Profile from Disease-Related Helicobacter pylori Isolates by Subcellular Fractionation and Nano-LC FT-ICR MS Analysis
%0 Journal Article
%D 2006
%J JOURNAL OF PROTEOME RESEARCH
%P 3197-3204
%V 5
%N 11
%U http://dx.doi.org/10.1021/pr060181p

%A Stuhler K
%A Koper K
%A Pfeiffer K
%A Tagariello A
%A Souquet M
%A Schwarte-Waldhoff I
%A Hahn SA
%A Schmiegel W
%A Meyer HE
%T Differential proteome analysis of colon carcinoma cell line SW480 after reconstitution of the tumour suppressor Smad4
%0 Journal Article
%D 2006
%J Anal Bioanal Chem
%P 1603-12
%V 386
%N 6
%U http://dx.doi.org/10.1007/s00216-006-0803-9

%A Michael J. Dunn
%T PROTEOMICS - Clinical Applications Call for Reviews
%0 Journal Article
%D 
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%U http://dx.doi.org/10.1002/pmic.200690127

%A Stephen J. Valentine
%A Manolo D. Plasencia
%A Xiaoyun Liu
%A Meera Krishnan
%A Stephen Naylor
%A Harold R. Udseth
%A Richard D. Smith
%A David E. Clemmer
%T Toward Plasma Proteome Profiling with Ion Mobility-Mass Spectrometry
%0 Journal Article
%D 2006
%J JOURNAL OF PROTEOME RESEARCH
%P 2977-2984
%V 5
%N 11
%U http://dx.doi.org/10.1021/pr060232i

%A Kurono S
%A Kurono T
%A Komori N
%A Niwayama S
%A Matsumoto H
%T Quantitative proteome analysis using D-labeled N-ethylmaleimide and (13)C-labeled iodoacetanilide by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry
%0 Journal Article
%D 2006
%J Bioorg Med Chem
%P 8197-209
%V 14
%N 24
%U http://dx.doi.org/10.1016/j.bmc.2006.09.023

%A Rahimi F
%A Shepherd CE
%A Halliday GM
%A Geczy CL
%A Raftery MJ
%T Antigen-epitope retrieval to facilitate proteomic analysis of formalin-fixed archival brain tissue
%0 Journal Article
%D 2006
%J Anal Chem
%P 7216-21
%V 78
%N 20
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17037924&dopt=Abstract

%A Alon Savidor
%A Ryan S. Donahoo
%A Oscar Hurtado-Gonzales
%A Nathan C. VerBerkmoes
%A Manesh B. Shah
%A Kurt H. Lamour
%A W. Hayes McDonald
%T Expressed Peptide Tags: An Additional Layer of Data for Genome Annotation
%0 Journal Article
%D 2006
%J JOURNAL OF PROTEOME RESEARCH
%P 3048-3058
%V 5
%N 11
%U http://dx.doi.org/10.1021/pr060134x

%A Regan C. Taylor and Jens R. Coorssen
%T Proteome Resolution by Two-Dimensional Gel Electrophoresis Varies with the Commercial Source of IPG Strips
%0 Journal Article
%D 2006
%J JOURNAL OF PROTEOME RESEARCH
%P 2919-2927
%V 5
%N 11
%U http://dx.doi.org/10.1021/pr060298d

%A Urban A. Kiernan
%A Dobrin Nedelkov
%A Randall W. Nelson
%T Multiplexed Mass Spectrometric Immunoassay in Biomarker Research: A Novel Approach to the Determination of a Myocardial Infarct
%0 Journal Article
%D 2006
%J JOURNAL OF PROTEOME RESEARCH
%P 2928-2934
%V 5
%N 11
%U http://dx.doi.org/10.1021/pr060062+

%A Okamoto H
%A Li J
%A Vortmeyer AO
%A Jaffe H
%A Lee YS
%A Glasker S
%A Sohn TS
%A Zeng W
%A Ikejiri B
%A Proescholdt MA
%A Mayer C
%A Weil RJ
%A Oldfield EH
%A Zhuang Z
%T Comparative proteomic profiles of meningioma subtypes
%0 Journal Article
%D 2006
%J Cancer Res
%P 10199-204
%V 66
%N 20
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17047085&dopt=Abstract

%A Francesca Zappacosta
%A Therese S. Collingwood
%A Michael J. Huddleston
%A Roland S. Annan
%T A Quantitative Results-driven Approach to Analyzing Multisite Protein Phosphorylation: The Phosphate-dependent Phosphorylation Profile of the Transcription Factor Pho4
%0 Journal Article
%D 2006
%J Mol Cell Proteomics
%P 2019-2030
%V 5
%N 11
%U http://www.mcponline.org/cgi/content/abstract/5/11/2019?etoc

%A Jones AM
%A Thomas V
%A Bennett MH
%A Mansfield J
%A Grant M
%T Modifications to the Arabidopsis defense Proteome Occur Prior to Significant Transcriptional Change in Response to Inoculation with Pseudomonas syringae
%0 Journal Article
%D 2006
%J Plant Physiol
%P 1603-20
%V 142
%N 4
%U http://dx.doi.org/10.1104/pp.106.086231

%A Eric Bertrand
%A Christine Fritsch
%A Sigrid Diether
%A George Lambrou
%A Dieter Muller
%A Frank Schaeffel
%A Patrick Schindler
%A Katrina L. Schmid
%A Jan van Oostrum
%A Hans Voshol
%T Identification of Apolipoprotein A-I as a "STOP" Signal for Myopia
%0 Journal Article
%D 2006
%J Mol Cell Proteomics
%P 2158-2166
%V 5
%N 11
%U http://www.mcponline.org/cgi/content/abstract/5/11/2158?etoc

%A Pierre Chaurand
%A Jeremy L. Norris
%A D. Shannon Cornett
%A James A. Mobley
%A Richard M. Caprioli
%T New Developments in Profiling and Imaging of Proteins from Tissue Sections by MALDI Mass Spectrometry
%0 Journal Article
%D 2006
%J JOURNAL OF PROTEOME RESEARCH
%P 2889-2900
%V 5
%N 11
%U http://dx.doi.org/10.1021/pr060346u

%A Noo ME
%A Deelder A
%A Werff M
%A Ozalp A
%A Mertens B
%A Tollenaar R
%T Maldi-tof serum protein profiling for the detection of breast cancer
%0 Journal Article
%D 2006
%J Onkologie
%P 501-6
%V 29
%N 11
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17068384&dopt=Abstract

%A Giri AP
%A Wunsche H
%A Mitra S
%A Zavala JA
%A Muck A
%A Svatos A
%A Baldwin IT
%T Molecular Interactions between the Specialist Herbivore Manduca sexta (Lepidoptera, Sphingidae) and Its Natural Host Nicotiana attenuata. VII. Changes in the Plant's proteomes
%0 Journal Article
%D 2006
%J Plant Physiol
%P 1621-41
%V 142
%N 4
%U http://dx.doi.org/10.1104/pp.106.088781

%A Nie L
%A Wu G
%A Zhang W
%T Correlation of mRNA expression and protein abundance affected by multiple sequence features related to translational efficiency in Desulfovibrio vulgaris: A quantitative analysis
%0 Journal Article
%D 2006
%J Genetics
%P 2229-43
%V 174
%N 4
%U http://dx.doi.org/10.1534/genetics.106.065862

%A Phan JH
%A Quo CF
%A Wang MD
%T Chapter 4 Functional genomics and proteomics in the clinical neurosciences: data mining and bioinformatics
%0 Journal Article
%D 2006
%J Prog Brain Res
%P 83-108
%V 158
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%A Daniels KM
%A Webb KE Jr
%A McGilliard ML
%A Meyer MJ
%A Van Amburgh ME
%A Akers RM
%T Effects of body weight and nutrition on mammary protein expression profiles in Holstein heifers
%0 Journal Article
%D 2006
%J J Dairy Sci
%P 4276-88
%V 89
%N 11
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17033015&dopt=Abstract

%A Mark J. Sartain
%A Richard A. Slayden
%A Krishna K. Singh
%A Suman Laal
%A andJohn T. Belisle
%T Disease State Differentiation and Identification of Tuberculosis Biomarkers via Native Antigen Array Profiling
%0 Journal Article
%D 2006
%J Mol Cell Proteomics
%P 2102-2113
%V 5
%N 11
%U http://www.mcponline.org/cgi/content/abstract/5/11/2102?etoc

%A Opii WO
%A Joshi G
%A Head E
%A Milgram NW
%A Muggenburg BA
%A Klein JB
%A Pierce WM
%A Cotman CW
%A Butterfield DA
%T Proteomic identification of brain proteins in the canine model of human aging following a long-term treatment with antioxidants and a program of behavioral enrichment: Relevance to Alzheimer's disease
%0 Journal Article
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%U http://dx.doi.org/10.1016/j.neurobiolaging.2006.09.012

%A Tjalsma H
%A Pluk W
%A van den Heuvel LP
%A Peters WH
%A Roelofs R
%A Swinkels DW
%T Proteomic inventory of &quot;Anchorless&quot; proteins on the colon adenocarcinoma cell surface
%0 Journal Article
%D 2006
%J Biochim Biophys Acta
%P 1607-17
%V 1764
%N 10
%U http://dx.doi.org/10.1016/j.bbapap.2006.09.002

%A Donghee Cho
%A Nackmoon Sung
%A Michael T. Collins
%T Identification of proteins of potential diagnostic value for bovine paratuberculosis
%0 Journal Article
%D 2006
%J PROTEOMICS
%P 5785-5794
%V 6
%N 21
%U http://dx.doi.org/10.1002/pmic.200600207

%A Claire R. Davies
%A Joanna S. Morris
%A Matthew R. Griffiths
%A Martin J. Page
%A Andrew Pitt
%A Torsten Stein
%A Barry A. Gusterson
%T Proteomic analysis of the mouse mammary gland is a powerful tool to identify novel proteins that are differentially expressed during mammary development
%0 Journal Article
%D 2006
%J PROTEOMICS
%P 5694-5704
%V 6
%N 21
%U http://dx.doi.org/10.1002/pmic.200600202

%A Kultima K
%A Scholz B
%A Alm H
%A Skold K
%A Svensson M
%A Crossman AR
%A Bezard E
%A Andren PE
%A Lonnstedt I
%T Normalization and expression changes in predefined sets of proteins using 2D gel electrophoresis: A proteomic study of L-DOPA induced dyskinesia in an animal model of Parkinsons disease using DIGE
%0 Journal Article
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%A Delphine Pflieger
%A Sandrine Chabane
%A Olivier Gaillard
%A Bruno Alain Bernard
%A Patrick Ducoroy
%A Jean Rossier
%A Joëlle Vinh
%T Comparative proteomic analysis of extracellular matrix proteins secreted by two types of skin fibroblasts
%0 Journal Article
%D 2006
%J PROTEOMICS
%P 5868-5879
%V 6
%N 21
%U http://dx.doi.org/10.1002/pmic.200402040

%A Xu P
%A Peng J
%T Dissecting the ubiquitin pathway by mass spectrometry
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%J Biochim Biophys Acta
%P 1940-7
%V 1764
%N 12
%U http://dx.doi.org/10.1016/j.bbapap.2006.09.004

%A Anja Tabbert
%A Ferdinand Kappes
%A Rolf Knippers
%A Josef Kellermann
%A Friedrich Lottspeich
%A Elisa Ferrando-May
%T Hypophosphorylation of the architectural chromatin protein DEK in death-receptor-induced apoptosis revealed by the isotope coded protein label proteomic platform
%0 Journal Article
%D 2006
%J PROTEOMICS
%P 5758-5772
%V 6
%N 21
%U http://dx.doi.org/10.1002/pmic.200600197

%A Saleem RA
%A Smith JJ
%A Aitchison JD
%T Proteomics of the peroxisome
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%D 2006
%J Biochim Biophys Acta
%P 1541-51
%V 1763
%N 12
%U http://dx.doi.org/10.1016/j.bbamcr.2006.09.005

%A Zhenpeng Li
%A Michael Kreutzer
%A Stefan Mikkat
%A Nikica Mi?e
%A Michael O. Glocker
%A Brigitte M. Pützer
%T Proteomic analysis of the E2F1 response in p53-negative cancer cells: New aspects in the regulation of cell survival and death
%0 Journal Article
%D 2006
%J PROTEOMICS
%P 5735-5745
%V 6
%N 21
%U http://dx.doi.org/10.1002/pmic.200600290

%A Yao Y
%A Yang YW
%A Liu JY
%T An efficient protein preparation for proteomic analysis of developing cotton fibers by 2-DE
%0 Journal Article
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%J Electrophoresis
%P 4559-69
%V 27
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%U http://dx.doi.org/10.1002/elps.200600111

%A Wolff S
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%A Bernhardt J
%A Bron S
%A Buttner K
%A van Dijl JM
%A Eymann C
%A Otto A
%A Tam LT
%A Hecker M
%T Towards the entire proteome of the model bacterium Bacillus subtilis by gel-based and gel-free approaches
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%A Chibani K
%A Ali-Rachedi S
%A Job C
%A Job D
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%A Grappin P
%T Proteomic Analysis of Seed Dormancy in Arabidopsis
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%J Plant Physiol
%P 1493-510
%V 142
%N 4
%U http://dx.doi.org/10.1104/pp.106.087452

%A San-Yuan Huang
%A Yu-Hui Chen
%A Shih-Hua Teng
%A I-Chung Chen
%A Lin-Lin Ho
%A Ching-Fu Tu
%T Protein expression of lymphocytes in HLA-DR transgenic pigs by a proteomic approach
%0 Journal Article
%D 2006
%J PROTEOMICS
%P 5815-5825
%V 6
%N 21
%U http://dx.doi.org/10.1002/pmic.200600054

%A Vitale AM
%A Calvert ME
%A Mallavarapu M
%A Yurttas P
%A Perlin J
%A Herr J
%A Coonrod S
%T Proteomic profiling of murine oocyte maturation
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%P 608-16
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%U http://dx.doi.org/10.1002/mrd.20648

%A Hemby SE
%T Chapter 9 Assessment of genome and proteome profiles in cocaine abuse
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%P 173-95
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%A Gozal YM
%A Cheng D
%A Duong DM
%A Lah JJ
%A Levey AI
%A Peng J
%T Merger of laser capture microdissection and mass spectrometry: a window into the amyloid plaque proteome
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%J Methods Enzymol
%P 77-93
%V 412
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%A Fietta AM
%A Bardoni AM
%A Salvini R
%A Passadore I
%A Morosini M
%A Cavagna L
%A Codullo V
%A Pozzi E
%A Meloni F
%A Montecucco C
%T Analysis of bronchoalveolar lavage fluid proteome from systemic sclerosis patients with or without functional, clinical and radiological signs of lung fibrosis
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%A Schabacker DS
%A Stefanovska I
%A Gavin I
%A Pedrak C
%A Chandler DP
%T Protein array staining methods for undefined protein content, manufacturing quality control, and performance validation
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%U http://dx.doi.org/10.1016/j.ab.2006.08.035

%A Hans Zischka
%A Ralf J. Braun
%A Enrico P. Marantidis
%A Dietmute Buringer
%A Carsten Bornhovd
%A Stefanie M. Hauck
%A Oliver Demmer
%A Christian J. Gloeckner
%A Andreas S. Reichert
%A Frank Madeo
%A Marius Ueffing
%T Differential Analysis of Saccharomyces cerevisiae Mitochondria by Free Flow Electrophoresis
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%J Mol Cell Proteomics
%P 2185-2200
%V 5
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%U http://www.mcponline.org/cgi/content/abstract/5/11/2185?etoc

%A Ecale Zhou CL
%A Lam MW
%A Smith JR
%A Zemla AT
%A Dyer MD
%A Kuczmarski TA
%A Vitalis EA
%A Slezak TR
%T MannDB - A microbial database of automated protein sequence analyses and evidence integration for protein characterization
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%A Horvatovich P
%A Govorukhina N
%A Bischoff R
%T Biomarker discovery by proteomics: challenges not only for the analytical chemist
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%J Analyst
%P 1193-6
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%A Jahnukainen T
%A Malehorn D
%A Sun M
%A Lyons-Weiler J
%A Bigbee W
%A Gupta G
%A Shapiro R
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%T Proteomic Analysis of Urine in Kidney Transplant Patients with BK Virus Nephropathy
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%U http://dx.doi.org/10.1681/ASN.2006050437

%A Tolstrup J
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%A Bruchhaus I
%T Proteomic analysis of Entamoeba histolytica
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%P 289-98
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%U http://dx.doi.org/10.1017/S0031182006001442

%A Krueger KE
%T The potential of serum proteomics for detection of cancer: promise or only hope?
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%P 498-9
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%A Rachel Weitzd&ouml;rfer
%A Harald H&ouml;ger
%A Arnold Pollak
%A Gert Lubec
%T Changes of Hippocampal Protein Levels during Postnatal Brain Development in the Rat
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%J JOURNAL OF PROTEOME RESEARCH
%P 3205-3212
%V 5
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%U http://dx.doi.org/10.1021/pr0602545

%A Hummon AB
%A Richmond TA
%A Verleyen P
%A Baggerman G
%A Huybrechts J
%A Ewing MA
%A Vierstraete E
%A Rodriguez-Zas SL
%A Schoofs L
%A Robinson GE
%A Sweedler JV
%T From the genome to the proteome: uncovering peptides in the Apis brain
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%J Science
%P 647-9
%V 314
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%A Potra FA
%A Liu X
%T Aligning families of two-dimensional gels by a combined multiresolution forward-inverse transformation approach
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%A Ivona Pavkova
%A Marketa Reichelova
%A P&auml;r Larsson
%A Martin Hubalek
%A Jana Vackova
%A Ake Forsberg
%A Jiri Stulik
%T Comparative Proteome Analysis of Fractions Enriched for Membrane-Associated Proteins from Francisella tularensis Subsp. tularensis and F. tularensis Subsp. holarctica Strains
%0 Journal Article
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%J JOURNAL OF PROTEOME RESEARCH
%P 3125-3134
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%U http://dx.doi.org/10.1021/pr0601887

%A Higashi Y
%A Hirai MY
%A Fujiwara T
%A Naito S
%A Noji M
%A Saito K
%T Proteomic and transcriptomic analysis of Arabidopsis seeds: molecular evidence for successive processing of seed proteins and its implication in the stress response to sulfur nutrition
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%J Plant J
%P 557-71
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%U http://dx.doi.org/10.1111/j.1365-313X.2006.02900.x

%A Wongtrakoongate P
%A Mongkoldhumrongkul N
%A Chaijan S
%A Kamchonwongpaisan S
%A Tungpradabkul S
%T Comparative proteomic profiles and the potential markers between Burkholderia pseudomallei and Burkholderia thailandensis
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%J Mol Cell Probes
%P 81-91
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%A Su Y
%A Shen J
%A Qian H
%A Ma H
%A Ji J
%A Ma H
%A Ma L
%A Zhang W
%A Meng L
%A Li Z
%A Wu J
%A Jin G
%A Zhang J
%A Shou C
%T Diagnosis of gastric cancer using decision tree classification of mass spectral data
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%A Duan ZG
%A Yan XJ
%A He XZ
%A Zhou H
%A Chen P
%A Cao R
%A Xiong JX
%A Hu WJ
%A Wang XC
%A Liang SP
%T Extraction and protein component analysis of venom from the dissected venom glands of Latrodectus tredecimguttatus
%0 Journal Article
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%J Comp Biochem Physiol B Biochem Mol Biol
%P 350-7
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%N 3-4
%U http://dx.doi.org/10.1016/j.cbpb.2006.08.006

%A Kaplan N
%A Linial M
%T ProtoBee: Hierarchical classification and annotation of the honey bee proteome
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%J Genome Res
%P 1431-8
%V 16
%N 11
%U http://dx.doi.org/10.1101/gr.4916306

%A Shang-Ting Tsai
%A Chiu Wen Chen
%A Ling Chu Lora Huang
%A Min-Chia Huang
%A Chung-Hsuan Chen
%A Yi-Sheng Wang
%T Simultaneous Mass Analysis of Positive and Negative Ions Using a Dual-Polarity Time-of-Flight Mass Spectrometer
%0 Journal Article
%D 2006
%J ANALYTICAL CHEMISTRY
%P 7729-7734
%V 78
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%U http://dx.doi.org/10.1021/ac061213v

%A Derek P. Thomas
%A Stefano P. Bachmann
%A Jose L. Lopez-Ribot
%T Proteomics for the analysis of the Candida albicans biofilm lifestyle
%0 Journal Article
%D 2006
%J PROTEOMICS
%P 5795-5804
%V 6
%N 21
%U http://dx.doi.org/10.1002/pmic.200600332

%A Hannah Johnson and Simon J Gaskell
%T Proteomics gets faster and smarter
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