%A Oleg V. Krokhin
%T Sequence-Specific Retention Calculator. Algorithm for Peptide Retention Prediction in Ion-Pair RP-HPLC: Application to 300- and 100-Å Pore Size C18 Sorbents
%0 Journal Article
%D 2006
%J ANALYTICAL CHEMISTRY
%P 7785-7795
%V 78
%N 22
%U http://dx.doi.org/10.1021/ac060777w

%A King N
%A Deutsch E
%A Ranish J
%A Nesvizhskii A
%A Eddes J
%A Mallick P
%A Eng J
%A Desiere F
%A Flory M
%A Martin D
%A Kim B
%A Lee H
%A Raught B
%A Aebersold R
%T Analysis of the S. cerevisiae proteome with PeptideAtlas
%0 Journal Article
%D 
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%U http://dx.doi.org/10.1186/gb-2006-7-11-r106

%A Zhu X
%A Gerstein M
%A Snyder M
%T ProCAT: a data analysis approach for protein microarrays
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%U http://dx.doi.org/10.1186/gb-2006-7-11-r110

%A Potra FA
%A Liu X
%T Aligning families of two-dimensional gels by a combined multiresolution forward-inverse transformation approach
%0 Journal Article
%D 2006
%J J Comput Biol
%P 1384-95
%V 13
%N 7
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17037965&dopt=Abstract

%A Ecale Zhou CL
%A Lam MW
%A Smith JR
%A Zemla AT
%A Dyer MD
%A Kuczmarski TA
%A Vitalis EA
%A Slezak TR
%T MannDB - A microbial database of automated protein sequence analyses and evidence integration for protein characterization
%0 Journal Article
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%A Laukens K
%A Matthiesen R
%A Lemiere F
%A Esmans E
%A Van Onckelen H
%A Jensen ON
%A Witters E
%T Integration of gel-based proteome data with pProRep
%0 Journal Article
%D 2006
%J Bioinformatics
%P 2838-40
%V 22
%N 22
%U http://dx.doi.org/10.1093/bioinformatics/btl487

%A Kultima K
%A Scholz B
%A Alm H
%A Skold K
%A Svensson M
%A Crossman AR
%A Bezard E
%A Andren PE
%A Lonnstedt I
%T Normalization and expression changes in predefined sets of proteins using 2D gel electrophoresis: A proteomic study of L-DOPA induced dyskinesia in an animal model of Parkinsons disease using DIGE
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%A van der Burgt YE
%A Taban IM
%A Konijnenburg M
%A Biskup M
%A Duursma MC
%A Heeren RM
%A Rompp A
%A van Nieuwpoort RV
%A Bal HE
%T Parallel Processing of Large Datasets from NanoLC-FTICR-MS Measurements
%0 Journal Article
%D 2007
%J J Am Soc Mass Spectrom
%P 152-61
%V 18
%N 1
%U http://dx.doi.org/10.1016/j.jasms.2006.09.005

%A Phan JH
%A Quo CF
%A Wang MD
%T Chapter 4 Functional genomics and proteomics in the clinical neurosciences: data mining and bioinformatics
%0 Journal Article
%D 2006
%J Prog Brain Res
%P 83-108
%V 158
%N 
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%A Sergey Pevtsov
%A Irina Fedulova
%A Hamid Mirzaei
%A Charles Buck
%A Xiang Zhang
%T Performance Evaluation of Existing De Novo Sequencing Algorithms
%0 Journal Article
%D 2006
%J JOURNAL OF PROTEOME RESEARCH
%P 3018-3028
%V 5
%N 11
%U http://dx.doi.org/10.1021/pr060222h

%A Chunguang G. Yang
%A Stephen J. Granite
%A Jennifer E. Van Eyk
%A Raimond L. Winslow
%T MASCOT HTML and XML parser: An implementation of a novel object model for protein identification data
%0 Journal Article
%D 2006
%J PROTEOMICS
%P 5688-5693
%V 6
%N 21
%U http://dx.doi.org/10.1002/pmic.200600157