TY - JOUR A1 - Drake TA A1 - Ping P T1 - Proteomics approaches to the systems biology of cardiovascular diseases JO - J Lipid Res Y1 - 2007 SP - 1 EP - 8 VL - 48 IS - 1 UR - http://dx.doi.org/10.1194/jlr.R600027-JLR200 ER - TY - JOUR A1 - Alberto Bavelloni A1 - Irene Faenza A1 - Gabriella Cioffi A1 - Manuela Piazzi A1 - Daniela Parisi A1 - Ivan Matic A1 - Nadir M. Maraldi A1 - Lucio Cocco T1 - Proteomic-based analysis of nuclear signaling: PLC?1 affects the expression of the splicing factor SRp20 in Friend erythroleukemia cells JO - PROTEOMICS Y1 - 2006 SP - 5725 EP - 5734 VL - 6 IS - 21 UR - http://dx.doi.org/10.1002/pmic.200600318 ER - TY - JOUR A1 - Peng Wu and David W. Grainger T1 - Comparison of Hydroxylated Print Additives on Antibody Microarray Performance JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2006 SP - 2956 EP - 2965 VL - 5 IS - 11 UR - http://dx.doi.org/10.1021/pr060217d ER - TY - JOUR A1 - Yi Zhu A1 - Rong Wu A1 - Navneet Sangha A1 - Chul Yoo A1 - Kathleen R. Cho A1 - Kerby A. Shedden A1 - Hidetaka Katabuchi A1 - David M. Lubman T1 - Classifications of ovarian cancer tissues by proteomic patterns JO - PROTEOMICS Y1 - 2006 SP - 5846 EP - 5856 VL - 6 IS - 21 UR - http://dx.doi.org/10.1002/pmic.200600165 ER - TY - JOUR A1 - Corinne Cayatte A1 - Catherine Pons A1 - Jean-Marie Guigonis A1 - Jerome Pizzol A1 - Laetitia Elies A1 - Philippe Kennel A1 - David Rouquie A1 - Remi Bars A1 - Bernard Rossi A1 - Michel Samson T1 - Protein Profiling of Rat Ventral Prostate following Chronic Finasteride Administration: Identification and Localization of a Novel Putative Androgen-regulated Protein JO - Mol Cell Proteomics Y1 - 2006 SP - 2031 EP - 2043 VL - 5 IS - 11 UR - http://www.mcponline.org/cgi/content/abstract/5/11/2031?etoc ER - TY - JOUR A1 - Heidi Hoi-Yee Ngai A1 - Wai-Hung Sit A1 - Ping-Ping Jiang A1 - Ruo-Jun Xu A1 - Jennifer Man-Fan Wan A1 - Visith Thongboonkerd T1 - Serial Changes in Urinary Proteome Profile of Membranous Nephropathy: Implications for Pathophysiology and Biomarker Discovery JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2006 SP - 3038 EP - 3047 VL - 5 IS - 11 UR - http://dx.doi.org/10.1021/pr060122b ER - TY - JOUR A1 - O'Gorman D A1 - Howard JC A1 - Varallo VM A1 - Cadieux P A1 - Bowley E A1 - McLean K A1 - Pak BJ A1 - Gan BS T1 - Identification of protein biomarkers in Dupuytren's contracture using surface enhanced laser desorption ionization time-of-flight mass spectrometry (SELDI-TOF-MS) JO - Clin Invest Med Y1 - 2006 SP - 136 EP - 45 VL - 29 IS - 3 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17058431&dopt=Abstract ER - TY - JOUR A1 - M. 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Mostaqul Huq A1 - Pawan Gupta A1 - Nien-Pei Tsai A1 - Li-Na Wei T1 - Modulation of Testicular Receptor 4 Activity by Mitogen-activated Protein Kinase-mediated Phosphorylation JO - Mol Cell Proteomics Y1 - 2006 SP - 2072 EP - 2082 VL - 5 IS - 11 UR - http://www.mcponline.org/cgi/content/abstract/5/11/2072?etoc ER - TY - JOUR A1 - Ward DG A1 - Cheng Y A1 - N'kontchou G A1 - Thar TT A1 - Barget N A1 - Wei W A1 - Martin A A1 - Beaugrand M A1 - Johnson PJ T1 - Preclinical and post-treatment changes in the HCC-associated serum proteome JO - Br J Cancer Y1 - 2006 SP - 1379 EP - 83 VL - 95 IS - 10 UR - http://dx.doi.org/10.1038/sj.bjc.6603429 ER - TY - JOUR A1 - Sultana R A1 - Perluigi M A1 - Butterfield DA T1 - Protein oxidation and lipid peroxidation in brain of subjects with Alzheimer's disease: insights into mechanism of neurodegeneration from redox proteomics JO - Antioxid Redox Signal Y1 - 2006 SP - 2021 EP - 37 VL - 8 IS - 11-12 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17034347&dopt=Abstract ER - TY - JOUR A1 - Fuentes M A1 - Mateo C A1 - Pessela BC A1 - Batalla P A1 - Fernandez-Lafuente R A1 - Guisan JM T1 - Solid phase proteomics: Dramatic reinforcement of very weak protein-protein interactions JO - Y1 - SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.jchromb.2006.09.024 ER - TY - JOUR A1 - Edita Sostaric A1 - Aristophanes S. Georgiou A1 - Chi H. Wong A1 - Paul F. Watson A1 - William V. Holt A1 - Alireza Fazeli T1 - Global Profiling of Surface Plasma Membrane Proteome of Oviductal Epithelial Cells JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2006 SP - 3029 EP - 3037 VL - 5 IS - 11 UR - http://dx.doi.org/10.1021/pr060366w ER - TY - JOUR A1 - Garcia JS A1 - Gratao PL A1 - Azevedo RA A1 - Arruda MA T1 - Metal Contamination Effects on Sunflower (Helianthus annuus L.) Growth and Protein Expression in Leaves During Development JO - J Agric Food Chem Y1 - 2006 SP - 8623 EP - 8630 VL - 54 IS - 22 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17061843&dopt=Abstract ER - TY - JOUR A1 - England K A1 - 'driscoll CO A1 - Cotter TG T1 - ROS and protein oxidation in early stages of cytotoxic drug induced apoptosis JO - Free Radic Res Y1 - 2006 SP - 1124 EP - 37 VL - 40 IS - 11 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17050166&dopt=Abstract ER - TY - JOUR A1 - Kim K. Hixson A1 - Joshua N. Adkins A1 - Scott E. Baker A1 - Ronald J. Moore A1 - Brett A. Chromy A1 - Richard D. Smith A1 - Sandra L. McCutchen-Maloney A1 - Mary S. Lipton T1 - Biomarker Candidate Identification in Yersinia pestis Using Organism-Wide Semiquantitative Proteomics JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2006 SP - 3008 EP - 3017 VL - 5 IS - 11 UR - http://dx.doi.org/10.1021/pr060179y ER - TY - JOUR A1 - Tannu NS A1 - Hemby SE T1 - Chapter 3 Methods for proteomics in neuroscience JO - Prog Brain Res Y1 - 2006 SP - 41 EP - 82 VL - 158 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17027691&dopt=Abstract ER - TY - JOUR A1 - Angelucci S A1 - Ciavardelli D A1 - Di Giuseppe F A1 - Eleuterio E A1 - Sulpizio M A1 - Tiboni GM A1 - Giampietro F A1 - Palumbo P A1 - Di Ilio C T1 - Proteome analysis of human follicular fluid JO - Biochim Biophys Acta Y1 - 2006 SP - 1775 EP - 85 VL - 1764 IS - 11 UR - http://dx.doi.org/10.1016/j.bbapap.2006.09.001 ER - TY - JOUR A1 - David Clifford A1 - Michael Buckley A1 - Kim Y. C. Fung A1 - Leah Cosgrove T1 - Interactive Feature Finding in Liquid Chromatography Mass Spectrometry Data JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2006 SP - 3179 EP - 3185 VL - 5 IS - 11 UR - http://dx.doi.org/10.1021/pr060226m ER - TY - JOUR A1 - Tibes R A1 - Qiu Y A1 - Lu Y A1 - Hennessy B A1 - Andreeff M A1 - Mills GB A1 - Kornblau SM T1 - Reverse phase protein array: validation of a novel proteomic technology and utility for analysis of primary leukemia specimens and hematopoietic stem cells JO - Mol Cancer Ther Y1 - 2006 SP - 2512 EP - 21 VL - 5 IS - 10 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17041095&dopt=Abstract ER - TY - JOUR A1 - Richard L. Beardsley A1 - William E. Running A1 - James P. Reilly T1 - Probing the Structure of the Caulobacter crescentus Ribosome with Chemical Labeling and Mass Spectrometry JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2006 SP - 2935 EP - 2946 VL - 5 IS - 11 UR - http://dx.doi.org/10.1021/pr060170w ER - TY - JOUR A1 - Buerke M A1 - Schwertz H A1 - Langin T A1 - Buerke U A1 - Prondzinsky R A1 - Platsch H A1 - Richert J A1 - Bomm S A1 - Schmidt M A1 - Hillen H A1 - Lindemann S A1 - Blaschke G A1 - Muller-Werdan U A1 - Werdan K T1 - Proteome analysis of myocardial tissue following ischemia and reperfusion-Effects of complement inhibition JO - Biochim Biophys Acta Y1 - 2006 SP - 1536 EP - 45 VL - 1764 IS - 10 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17045855&dopt=Abstract ER - TY - JOUR A1 - Spangenberg HC A1 - Thimme R A1 - Blum HE T1 - Serum markers of hepatocellular carcinoma JO - Semin Liver Dis Y1 - 2006 SP - 385 EP - 90 VL - 26 IS - 4 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17051452&dopt=Abstract ER - TY - JOUR A1 - King N A1 - Deutsch E A1 - Ranish J A1 - Nesvizhskii A A1 - Eddes J A1 - Mallick P A1 - Eng J A1 - Desiere F A1 - Flory M A1 - Martin D A1 - Kim B A1 - Lee H A1 - Raught B A1 - Aebersold R T1 - Analysis of the S. cerevisiae proteome with PeptideAtlas JO - Y1 - SP - EP - VL - IS - UR - http://dx.doi.org/10.1186/gb-2006-7-11-r106 ER - TY - JOUR A1 - Burckstummer T A1 - Bennett KL A1 - Preradovic A A1 - Schutze G A1 - Hantschel O A1 - Superti-Furga G A1 - Bauch A T1 - An efficient tandem affinity purification procedure for interaction proteomics in mammalian cells JO - Nat Methods Y1 - 2006 SP - 1013 EP - 9 VL - 3 IS - 12 UR - http://dx.doi.org/10.1038/nmeth968 ER - TY - JOUR A1 - Minoru Yamaguchi A1 - Mutsumi Oka A1 - Kimiko Nishida A1 - Mayu Ishida A1 - Ayako Hamazaki A1 - Hiroki Kuyama A1 - Eiji Ando A1 - Taka-aki Okamura A1 - Norikazu Ueyama A1 - Shigemi Norioka A1 - Osamu Nishimura A1 - Susumu Tsunasawa A1 - Takashi Nakazawa T1 - Enhancement of MALDI-MS Spectra of C-Terminal Peptides by the Modification of Proteins via an Active Ester Generated in Situ from an Oxazolone JO - ANALYTICAL CHEMISTRY Y1 - 2006 SP - 7861 EP - 7869 VL - 78 IS - 22 UR - http://dx.doi.org/10.1021/ac0610816 ER - TY - JOUR A1 - Cepek L A1 - Brechlin P A1 - Steinacker P A1 - Mollenhauer B A1 - Klingebiel E A1 - Bibl M A1 - Kretzschmar HA A1 - Wiltfang J A1 - Otto M T1 - Proteomic Analysis of the Cerebrospinal Fluid of Patients with Creutzfeldt-Jakob Disease JO - Dement Geriatr Cogn Disord Y1 - 2006 SP - 22 EP - 28 VL - 23 IS - 1 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17068393&dopt=Abstract ER - TY - JOUR A1 - Qian Shi A1 - Lyndsay N. Harris A1 - Xin Lu A1 - Xiaochun Li A1 - Justin Hwang A1 - Robert Gentleman A1 - J. Dirk Iglehart A1 - Alexander Miron T1 - Declining Plasma Fibrinogen Alpha Fragment Identifies HER2-Positive Breast Cancer Patients and Reverts to Normal Levels after Surgery JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2006 SP - 2947 EP - 2955 VL - 5 IS - 11 UR - http://dx.doi.org/10.1021/pr060099u ER - TY - JOUR A1 - Bing Zhang A1 - Nathan C. VerBerkmoes A1 - Michael A. Langston A1 - Edward Uberbacher A1 - Robert L. Hettich A1 - Nagiza F. Samatova T1 - Detecting Differential and Correlated Protein Expression in Label-Free Shotgun Proteomics JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2006 SP - 2909 EP - 2918 VL - 5 IS - 11 UR - http://dx.doi.org/10.1021/pr0600273 ER - TY - JOUR A1 - Chunling Wan A1 - Yifeng Yang A1 - Huafang Li A1 - Yujuan La A1 - Hui Zhu A1 - Lei Jiang A1 - Yongshuo Chen A1 - Guoyin Feng A1 - Lin He T1 - Dysregulation of Retinoid Transporters Expression in Body Fluids of Schizophrenia Patients JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2006 SP - 3213 EP - 3216 VL - 5 IS - 11 UR - http://dx.doi.org/10.1021/pr060176l ER - TY - JOUR A1 - Ji QC A1 - Rodila R A1 - El-Shourbagy TA T1 - A sample preparation process for LC-MS/MS analysis of total protein drug concentrations in monkey plasma samples with antibody JO - J Chromatogr B Analyt Technol Biomed Life Sci Y1 - 2007 SP - 133 EP - 41 VL - 847 IS - 2 UR - http://dx.doi.org/10.1016/j.jchromb.2006.09.039 ER - TY - JOUR A1 - Vincent Castronovo A1 - David Waltregny A1 - Philippe Kischel A1 - Christoph Roesli A1 - Giuliano Elia A1 - Jascha-N. Rybak A1 - Dario Neri T1 - A Chemical Proteomics Approach for the Identification of Accessible Antigens Expressed in Human Kidney Cancer JO - Mol Cell Proteomics Y1 - 2006 SP - 2083 EP - 2091 VL - 5 IS - 11 UR - http://www.mcponline.org/cgi/content/abstract/5/11/2083?etoc ER - TY - JOUR A1 - Freire SL A1 - Wheeler AR T1 - Proteome-on-a-chip: Mirage, or on the horizon? JO - Lab Chip Y1 - 2006 SP - 1415 EP - 23 VL - 6 IS - 11 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17066164&dopt=Abstract ER - TY - JOUR A1 - Edwin Ho A1 - Andrew Hayen A1 - Marc R. Wilkins T1 - Characterisation of organellar proteomes: A guide to subcellular proteomic fractionation and analysis JO - PROTEOMICS Y1 - 2006 SP - 5746 EP - 5757 VL - 6 IS - 21 UR - http://dx.doi.org/10.1002/pmic.200600241 ER - TY - JOUR A1 - Mario Cindri A1 - Laura Bindila A1 - Tina epo A1 - Jasna Peter-Katalini T1 - Mass Spectrometry-Based Glycoproteomic Approach Involving Lysine Derivatization for Structural Characterization of Recombinant Human Erythropoietin JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2006 SP - 3066 EP - 3076 VL - 5 IS - 11 UR - http://dx.doi.org/10.1021/pr060177d ER - TY - JOUR A1 - Webster MJ T1 - Chapter 1 Tissue preparation and banking JO - Prog Brain Res Y1 - 2006 SP - 3 EP - 14 VL - 158 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17027689&dopt=Abstract ER - TY - JOUR A1 - Marguiles AG A1 - Klimberg VS A1 - Bhattacharrya S A1 - Gaddy D A1 - Suva LJ T1 - Genomics and Proteomics of Bone Cancer JO - Clin Cancer Res Y1 - 2006 SP - 6217s EP - 6221s VL - 12 IS - 20 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17062704&dopt=Abstract ER - TY - JOUR A1 - Mosley K A1 - Tam FW A1 - Edwards RJ A1 - Crozier J A1 - Pusey CD A1 - Lightstone L T1 - Urinary proteomic profiles distinguish between active and inactive lupus nephritis JO - Rheumatology (Oxford) Y1 - 2006 SP - 1497 EP - 504 VL - 45 IS - 12 UR - http://dx.doi.org/10.1093/rheumatology/kel351 ER - TY - JOUR A1 - Si-Gui Zhou A1 - Shu-Feng Zhou A1 - He-Qing Huang A1 - Jian-Wen Chen A1 - Min Huang A1 - Pei-Qing Liu T1 - Proteomic Analysis of Hypertrophied Myocardial Protein Patterns in Renovascularly Hypertensive and Spontaneously Hypertensive Rats JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2006 SP - 2901 EP - 2908 VL - 5 IS - 11 UR - http://dx.doi.org/10.1021/pr050456l ER - TY - JOUR A1 - Zhi Dai A1 - Yin-Kun Liu A1 - Jie-Feng Cui A1 - Hua-Li Shen A1 - Jie Chen A1 - Rui-Xia Sun A1 - Yu Zhang A1 - Xin-Wen Zhou A1 - Peng-Yuan Yang A1 - Zhao-You Tang T1 - Identification and analysis of altered ?1,6-fucosylated glycoproteins associated with hepatocellular carcinoma metastasis JO - PROTEOMICS Y1 - 2006 SP - 5857 EP - 5867 VL - 6 IS - 21 UR - http://dx.doi.org/10.1002/pmic.200500707 ER - TY - JOUR A1 - Jun-yong Jia A1 - Stephanie Lamer A1 - Michael Schumann A1 - Michael R. Schmidt A1 - Eberhard Krause A1 - Volker Haucke T1 - Quantitative Proteomics Analysis of Detergent-resistant Membranes from Chemical Synapses: Evidence for Cholesterol as Spatial Organizer of Synaptic Vesicle Cycling JO - Mol Cell Proteomics Y1 - 2006 SP - 2060 EP - 2071 VL - 5 IS - 11 UR - http://www.mcponline.org/cgi/content/abstract/5/11/2060?etoc ER - TY - JOUR A1 - Vitaly Kochin A1 - Susumu Y. Imanishi A1 - John E. Eriksson T1 - Fast track to a phosphoprotein sketch - MALDI-TOF characterization of TLC-based tryptic phosphopeptide maps at femtomolar detection sensitivity JO - PROTEOMICS Y1 - 2006 SP - 5676 EP - 5682 VL - 6 IS - 21 UR - http://dx.doi.org/10.1002/pmic.200600457 ER - TY - JOUR A1 - An Chi A1 - Julio C. Valencia A1 - Zhang-Zhi Hu A1 - Hidenori Watabe A1 - Hiroshi Yamaguchi A1 - Nancy J. Mangini A1 - Hongzhan Huang A1 - Victor A. Canfield A1 - Keith C. Cheng A1 - Feng Yang A1 - Riichiro Abe A1 - Shoichi Yamagishi A1 - Jeffrey Shabanowitz A1 - Vincent J. Hearing A1 - Cathy Wu A1 - Ettore Appell T1 - Proteomic and Bioinformatic Characterization of the Biogenesis and Function of Melanosomes JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2006 SP - 3135 EP - 3144 VL - 5 IS - 11 UR - http://dx.doi.org/10.1021/pr060363j ER - TY - JOUR A1 - Hong Wang and David L. Brautigan T1 - Peptide Microarray Analysis of Substrate Specificity of the Transmembrane Ser/Thr Kinase KPI-2 Reveals Reactivity with Cystic Fibrosis Transmembrane Conductance Regulator and Phosphorylase JO - Mol Cell Proteomics Y1 - 2006 SP - 2124 EP - 2130 VL - 5 IS - 11 UR - http://www.mcponline.org/cgi/content/abstract/5/11/2124?etoc ER - TY - JOUR A1 - Tao Liu A1 - Wei-Jun Qian A1 - Heather M. Mottaz A1 - Marina A. Gritsenko A1 - Angela D. Norbeck A1 - Ronald J. Moore A1 - Samuel O. Purvine A1 - David G. Camp A1 - II A1 - Richard D. Smith T1 - Evaluation of Multiprotein Immunoaffinity Subtraction for Plasma Proteomics and Candidate Biomarker Discovery Using Mass Spectrometry JO - Mol Cell Proteomics Y1 - 2006 SP - 2167 EP - 2174 VL - 5 IS - 11 UR - http://www.mcponline.org/cgi/content/abstract/5/11/2167?etoc ER - TY - JOUR A1 - Wuhrer M A1 - Catalina MI A1 - Deelder AM A1 - Hokke CH T1 - Glycoproteomics based on tandem mass spectrometry of glycopeptides JO - Y1 - SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.jchromb.2006.09.041 ER - TY - JOUR A1 - Chun-Ming Huang A1 - Chao-Cheng Wang A1 - Stephen Barnes A1 - Craig A. Elmets T1 - In vivo detection of secreted proteins from wounded skin using capillary ultrafiltration probes and mass spectrometric proteomics JO - PROTEOMICS Y1 - 2006 SP - 5805 EP - 5814 VL - 6 IS - 21 UR - http://dx.doi.org/10.1002/pmic.200600163 ER - TY - JOUR A1 - van der Burgt YE A1 - Taban IM A1 - Konijnenburg M A1 - Biskup M A1 - Duursma MC A1 - Heeren RM A1 - Rompp A A1 - van Nieuwpoort RV A1 - Bal HE T1 - Parallel Processing of Large Datasets from NanoLC-FTICR-MS Measurements JO - J Am Soc Mass Spectrom Y1 - 2007 SP - 152 EP - 61 VL - 18 IS - 1 UR - http://dx.doi.org/10.1016/j.jasms.2006.09.005 ER - TY - JOUR A1 - Zhang L A1 - Wang LS A1 - Xu Y A1 - Xia L A1 - Chen WL A1 - Zheng Y A1 - Chen GQ T1 - Comparative proteomic analysis of human leukemic cells with and without inducible expression of leukemogenic AML1-ETO protein JO - Chin J Physiol Y1 - 2006 SP - 182 EP - 91 VL - 49 IS - 4 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17058450&dopt=Abstract ER - TY - JOUR A1 - Xue Gu A1 - Chunhui Deng A1 - Guoquan Yan A1 - Xiangmin Zhang T1 - Capillary Array Reversed-Phase Liquid Chromatography-Based Multidimensional Separation System Coupled with MALDI-TOF-TOF-MS Detection for High-Throughput Proteome Analysis JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2006 SP - 3186 EP - 3196 VL - 5 IS - 11 UR - http://dx.doi.org/10.1021/pr0602592 ER - TY - JOUR A1 - Sang Woo Kim A1 - Hye Jin Hwang A1 - Eun Jae Cho A1 - Jung Young Oh A1 - Yu-Mi Baek A1 - Jang Won Choi A1 - Jong Won Yun T1 - Time-Dependent Plasma Protein Changes in Streptozotocin-Induced Diabetic Rats before and after Fungal Polysaccharide Treatments JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2006 SP - 2966 EP - 2976 VL - 5 IS - 11 UR - http://dx.doi.org/10.1021/pr0602601 ER - TY - JOUR A1 - Grassl J A1 - Morishita M A1 - Lewis PD A1 - Leonard RC A1 - Thomas G T1 - Profiling the breast cancer proteome--the new tool of the future? JO - Clin Oncol (R Coll Radiol) Y1 - 2006 SP - 581 EP - 6 VL - 18 IS - 8 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17051946&dopt=Abstract ER - TY - JOUR A1 - Angel PM A1 - Orlando R T1 - Trypsin is the primary mechanism by which the (18)O isotopic label is lost in quantitative proteomic studies JO - Anal Biochem Y1 - 2006 SP - 26 EP - 34 VL - 359 IS - 1 UR - http://dx.doi.org/10.1016/j.ab.2006.08.036 ER - TY - JOUR A1 - Van C. Kelly A1 - Sulee Kuy A1 - David J. Palmer A1 - Zhenzhong Xu A1 - Stephen R. Davis A1 - Garth J. Cooper T1 - Characterization of bovine seminal plasma by proteomics JO - PROTEOMICS Y1 - 2006 SP - 5826 EP - 5833 VL - 6 IS - 21 UR - http://dx.doi.org/10.1002/pmic.200500830 ER - TY - JOUR A1 - Song K A1 - Hanash S T1 - Unraveling the Complex Proteome for Biomarker Discovery in Gastrointestinal and Liver Diseases JO - Gastroenterology Y1 - 2006 SP - 1375 EP - 8 VL - 131 IS - 5 UR - http://dx.doi.org/10.1053/j.gastro.2006.09.025 ER - TY - JOUR A1 - Robert Leslie James Graham A1 - Catherine E. Pollock A1 - S. Naomi O'Loughlin A1 - Nigel G. Ternan A1 - D. Brent Weatherly A1 - Philip J. Jackson A1 - Rick L. Tarleton A1 - Geoff McMullan T1 - Multidimensional Proteomic Analysis of the Soluble Subproteome of the Emerging Nosocomial Pathogen Ochrobactrum anthropi JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2006 SP - 3145 EP - 3153 VL - 5 IS - 11 UR - http://dx.doi.org/10.1021/pr060293g ER - TY - JOUR A1 - Kareem L. Graham A1 - Maria Vaysberg A1 - Annie Kuo A1 - Paul J. Utz T1 - Autoantigen arrays for multiplex analysis of antibody isotypes JO - PROTEOMICS Y1 - 2006 SP - 5720 EP - 5724 VL - 6 IS - 21 UR - http://dx.doi.org/10.1002/pmic.200600345 ER - TY - JOUR A1 - Zhu X A1 - Gerstein M A1 - Snyder M T1 - ProCAT: a data analysis approach for protein microarrays JO - Y1 - SP - EP - VL - IS - UR - http://dx.doi.org/10.1186/gb-2006-7-11-r110 ER - TY - JOUR A1 - Lee DH A1 - Kim SG A1 - Park YC A1 - Nam SW A1 - Lee KH A1 - Seo JH T1 - Proteome analysis of recombinant Escherichia coli producing human glucagon-like peptide-1 JO - Y1 - SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.jchromb.2006.09.042 ER - TY - JOUR A1 - Gevaert K A1 - Van Damme P A1 - Ghesquiere B A1 - Vandekerckhove J T1 - Protein processing and other modifications analyzed by diagonal peptide chromatography JO - Biochim Biophys Acta Y1 - 2006 SP - 1801 EP - 10 VL - 1764 IS - 12 UR - http://dx.doi.org/10.1016/j.bbapap.2006.09.003 ER - TY - JOUR A1 - Wei-Fei Diao A1 - Wei-Qiang Chen A1 - Yuanyuan Wu A1 - Peng Liu A1 - Xiao-Lei Xie A1 - Shuai Li A1 - Ping-Ping Shen A1 - Jianguo Ji T1 - Serum, liver, and kidney proteomic analysis for the alloxan-induced type I diabetic mice after insulin gene transfer of naked plasmid through electroporation JO - PROTEOMICS Y1 - 2006 SP - 5837 EP - 5845 VL - 6 IS - 21 UR - http://dx.doi.org/10.1002/pmic.200500697 ER - TY - JOUR A1 - R. Hussain Butt A1 - Maggie W. Y. Lee A1 - S. Ahmadi Pirshahid A1 - Peter S. Backlund,O Stephen Wood A1 - Jens R. Coorssen T1 - An Initial Proteomic Analysis of Human Preterm Labor: Placental Membranes JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2006 SP - 3161 EP - 3172 VL - 5 IS - 11 UR - http://dx.doi.org/10.1021/pr060282n ER - TY - JOUR A1 - Ganesh Kumar Agrawal and Jay J. Thelen T1 - Large Scale Identification and Quantitative Profiling of Phosphoproteins Expressed during Seed Filling in Oilseed Rape JO - Mol Cell Proteomics Y1 - 2006 SP - 2044 EP - 2059 VL - 5 IS - 11 UR - http://www.mcponline.org/cgi/content/abstract/5/11/2044?etoc ER - TY - JOUR A1 - Hiba El Hajj A1 - Emmanuelle Demey A1 - Joël Poncet A1 - Maryse Lebrun A1 - Bo Wu A1 - Nathalie Galéotti A1 - Marie Noëlle Fourmaux A1 - Odile Mercereau-Puijalon A1 - Henri Vial A1 - Gilles Labesse A1 - Jean François Dubremetz T1 - The ROP2 family of Toxoplasma gondii rhoptry proteins: Proteomic and genomic characterization and molecular modeling JO - PROTEOMICS Y1 - 2006 SP - 5773 EP - 5784 VL - 6 IS - 21 UR - http://dx.doi.org/10.1002/pmic.200600187 ER - TY - JOUR A1 - Daniel Blanchard A1 - Harald Hutter A1 - Jamie Fleenor A1 - Andrew Fire T1 - A Differential Cytolocalization Assay for Analysis of Macromolecular Assemblies in the Eukaryotic Cytoplasm JO - Mol Cell Proteomics Y1 - 2006 SP - 2175 EP - 2184 VL - 5 IS - 11 UR - http://www.mcponline.org/cgi/content/abstract/5/11/2175?etoc ER - TY - JOUR A1 - Xu C A1 - Garrett WM A1 - Sullivan J A1 - Caperna TJ A1 - Natarajan S T1 - Separation and identification of soybean leaf proteins by two-dimensional gel electrophoresis and mass spectrometry JO - Phytochemistry Y1 - 2006 SP - 2431 EP - 40 VL - 67 IS - 22 UR - http://dx.doi.org/10.1016/j.phytochem.2006.09.002 ER - TY - JOUR A1 - Zsuzsanna Doszt nyi A1 - Jake Chen A1 - A. Keith Dunker A1 - Istv n Simon A1 - Peter Tompa T1 - Disorder and Sequence Repeats in Hub Proteins and Their Implications for Network Evolution JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2006 SP - 2985 EP - 2995 VL - 5 IS - 11 UR - http://dx.doi.org/10.1021/pr060171o ER - TY - JOUR A1 - Chunguang G. Yang A1 - Stephen J. Granite A1 - Jennifer E. Van Eyk A1 - Raimond L. Winslow T1 - MASCOT HTML and XML parser: An implementation of a novel object model for protein identification data JO - PROTEOMICS Y1 - 2006 SP - 5688 EP - 5693 VL - 6 IS - 21 UR - http://dx.doi.org/10.1002/pmic.200600157 ER - TY - JOUR A1 - Plumb RS A1 - Rainville P A1 - Smith BW A1 - Johnson KA A1 - Castro-Perez J A1 - Wilson ID A1 - Nicholson JK T1 - Generation of Ultrahigh Peak Capacity LC Separations via Elevated Temperatures and High Linear Mobile-Phase Velocities JO - Anal Chem Y1 - 2006 SP - 7278 EP - 7283 VL - 78 IS - 20 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17037933&dopt=Abstract ER - TY - JOUR A1 - Carroll J A1 - Fearnley IM A1 - Walker JE T1 - Definition of the mitochondrial proteome by measurement of molecular masses of membrane proteins JO - Proc Natl Acad Sci U S A Y1 - 2006 SP - 16170 EP - 5 VL - 103 IS - 44 UR - http://dx.doi.org/10.1073/pnas.0607719103 ER - TY - JOUR A1 - Joko Prayitno A1 - Nijat Imin A1 - Barry G. Rolfe A1 - Ulrike Mathesius T1 - Identification of Ethylene-Mediated Protein Changes during Nodulation in Medicago truncatula Using Proteome Analysis JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2006 SP - 3084 EP - 3095 VL - 5 IS - 11 UR - http://dx.doi.org/10.1021/pr0602646 ER - TY - JOUR A1 - Laukens K A1 - Matthiesen R A1 - Lemiere F A1 - Esmans E A1 - Van Onckelen H A1 - Jensen ON A1 - Witters E T1 - Integration of gel-based proteome data with pProRep JO - Bioinformatics Y1 - 2006 SP - 2838 EP - 40 VL - 22 IS - 22 UR - http://dx.doi.org/10.1093/bioinformatics/btl487 ER - TY - JOUR A1 - Reynolds JL A1 - Mahajan SD A1 - Bindukumar B A1 - Sykes D A1 - Schwartz SA A1 - Nair MP T1 - Proteomic analysis of the effects of cocaine on the enhancement of HIV-1 replication in normal human astrocytes (NHA) JO - Brain Res Y1 - 2006 SP - 226 EP - 36 VL - 1123 IS - 1 UR - http://dx.doi.org/10.1016/j.brainres.2006.09.034 ER - TY - JOUR A1 - Baptiste Leroy A1 - Gerard Toubeau A1 - Paul Falmagne A1 - Ruddy Wattiez T1 - Identification and Characterization of New Protein Chemoattractants in the Frog Skin Secretome JO - Mol Cell Proteomics Y1 - 2006 SP - 2114 EP - 2123 VL - 5 IS - 11 UR - http://www.mcponline.org/cgi/content/abstract/5/11/2114?etoc ER - TY - JOUR A1 - Coldham NG A1 - Randall LP A1 - Piddock LJ A1 - Woodward MJ T1 - Effect of fluoroquinolone exposure on the proteome of Salmonella enterica serovar Typhimurium JO - J Antimicrob Chemother Y1 - 2006 SP - 1145 EP - 53 VL - 58 IS - 6 UR - http://dx.doi.org/10.1093/jac/dkl413 ER - TY - JOUR A1 - Zahedi RP A1 - Begonja AJ A1 - Gambaryan S A1 - Sickmann A T1 - Phosphoproteomics of human platelets: A quest for novel activation pathways JO - Biochim Biophys Acta Y1 - 2006 SP - 1963 EP - 76 VL - 1764 IS - 12 UR - http://dx.doi.org/10.1016/j.bbapap.2006.08.017 ER - TY - JOUR A1 - Oleg V. Krokhin T1 - Sequence-Specific Retention Calculator. Algorithm for Peptide Retention Prediction in Ion-Pair RP-HPLC: Application to 300- and 100-Å Pore Size C18 Sorbents JO - ANALYTICAL CHEMISTRY Y1 - 2006 SP - 7785 EP - 7795 VL - 78 IS - 22 UR - http://dx.doi.org/10.1021/ac060777w ER - TY - JOUR A1 - Weinkauf M A1 - Hiddemann W A1 - Dreyling M T1 - Sample pooling in 2-D gel electrophoresis: A new approach to reduce nonspecific expression background JO - Electrophoresis Y1 - 2006 SP - 4555 EP - 8 VL - 27 IS - 22 UR - http://dx.doi.org/10.1002/elps.200600207 ER - TY - JOUR A1 - Megumi Hato A1 - Hiroaki Nakagawa A1 - Masaki Kurogochi A1 - Tomoya O. Akama A1 - Jamey D. Marth A1 - Michiko N. Fukuda A1 - Shin-Ichiro Nishimura T1 - Unusual N-Glycan Structures in {alpha}-Mannosidase II/IIx Double Null Embryos Identified by a Systematic Glycomics Approach Based on Two-dimensional LC Mapping and Matrix-dependent Selective Fragmentation Method in MALDI-TOF/TOF Mass Spectrometry JO - Mol Cell Proteomics Y1 - 2006 SP - 2146 EP - 2157 VL - 5 IS - 11 UR - http://www.mcponline.org/cgi/content/abstract/5/11/2146?etoc ER - TY - JOUR A1 - Noble J A1 - Dua RS A1 - Locke I A1 - Eeles R A1 - Gui GP A1 - Isacke CM T1 - Proteomic analysis of nipple aspirate fluid throughout the menstrual cycle in healthy pre-menopausal women JO - Y1 - SP - EP - VL - IS - UR - http://dx.doi.org/10.1007/s10549-006-9402-x ER - TY - JOUR A1 - Li C A1 - Gawandi V A1 - Protos A A1 - Phillips RS A1 - Amster IJ T1 - A matrix-assisted laser desorption/ionization compatible reagent for tagging tryptophan residues JO - Eur J Mass Spectrom (Chichester Eng) Y1 - 2006 SP - 213 EP - 21 VL - 12 IS - 4 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17057278&dopt=Abstract ER - TY - JOUR A1 - Luke H. Stockwin A1 - Josip Blonder A1 - Maja A. Bumke A1 - David A. Lucas A1 - King C. Chan A1 - Thomas P. Conrads A1 - Haleem J. Issaq A1 - Timothy D. Veenstra A1 - Dianne L. Newton A1 - Susanna M. Rybak T1 - Proteomic Analysis of Plasma Membrane from Hypoxia-Adapted Malignant Melanoma JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2006 SP - 2996 EP - 3007 VL - 5 IS - 11 UR - http://dx.doi.org/10.1021/pr0601739 ER - TY - JOUR A1 - Ming-Jiun Yu A1 - Trairak Pisitkun A1 - Guanghui Wang A1 - Rong-Fong Shen A1 - Mark A. Knepper T1 - LC-MS/MS Analysis of Apical and Basolateral Plasma Membranes of Rat Renal Collecting Duct Cells JO - Mol Cell Proteomics Y1 - 2006 SP - 2131 EP - 2145 VL - 5 IS - 11 UR - http://www.mcponline.org/cgi/content/abstract/5/11/2131?etoc ER - TY - JOUR A1 - D. C. Anderson A1 - Elsie L. Campbell A1 - John C. Meeks T1 - A Soluble 3D LC/MS/MS Proteome of the Filamentous Cyanobacterium Nostoc punctiforme JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2006 SP - 3096 EP - 3104 VL - 5 IS - 11 UR - http://dx.doi.org/10.1021/pr060272m ER - TY - JOUR A1 - Taverna F A1 - Negri A A1 - Piccinini R A1 - Zecconi A A1 - Nonnis S A1 - Ronchi S A1 - Tedeschi G T1 - Characterization of cell wall associated proteins of a Staphylococcus aureus isolated from bovine mastitis case by a proteomic approach JO - Vet Microbiol Y1 - 2007 SP - 240 EP - 7 VL - 119 IS - 2-4 UR - http://dx.doi.org/10.1016/j.vetmic.2006.09.007 ER - TY - JOUR A1 - Atsushi Morita A1 - Etsuko Miyagi A1 - Hidetaro Yasumitsu A1 - Hiroshi Kawasaki A1 - Hisashi Hirano A1 - Fumiki Hirahara T1 - Proteomic search for potential diagnostic markers and therapeutic targets for ovarian clear cell adenocarcinoma JO - PROTEOMICS Y1 - 2006 SP - 5880 EP - 5890 VL - 6 IS - 21 UR - http://dx.doi.org/10.1002/pmic.200500708 ER - TY - JOUR A1 - Lesley A. Kane A1 - Christina K. Yung A1 - Giulio Agnetti A1 - Irina Neverova A1 - Jennifer E. Van Eyk T1 - Optimization of paper bridge loading for 2-DE analysis in the basic pH region: Application to the mitochondrial subproteome JO - PROTEOMICS Y1 - 2006 SP - 5683 EP - 5687 VL - 6 IS - 21 UR - http://dx.doi.org/10.1002/pmic.200600267 ER - TY - JOUR A1 - Markus Roessler A1 - Wolfgang Rollinger A1 - Liliana Mantovani-Endl A1 - Marie-Luise Hagmann A1 - Stefan Palme A1 - Peter Berndt A1 - Alfred M. Engel A1 - Michael Pfeffer A1 - Johann Karl A1 - Heinz Bodenmuller A1 - Josef Ruschoff A1 - Thomas Henkel A1 - Gerhard Rohr A1 - Siegbert Rossol A1 - Wolfgang Rosch A1 - H T1 - Identification of PSME3 as a Novel Serum Tumor Marker for Colorectal Cancer by Combining Two-dimensional Polyacrylamide Gel Electrophoresis with a Strictly Mass Spectrometry-based Approach for Data Analysis JO - Mol Cell Proteomics Y1 - 2006 SP - 2092 EP - 2101 VL - 5 IS - 11 UR - http://www.mcponline.org/cgi/content/abstract/5/11/2092?etoc ER - TY - JOUR A1 - Radovan Hynek A1 - Birte Svensson A1 - Ole N rregaard Jensen A1 - Vibeke Barkholt A1 - Christine Finnie T1 - Enrichment and Identification of Integral Membrane Proteins from Barley Aleurone Layers by Reversed-Phase Chromatography, SDS-PAGE, and LC-MS/MS JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2006 SP - 3105 EP - 3113 VL - 5 IS - 11 UR - http://dx.doi.org/10.1021/pr0602850 ER - TY - JOUR A1 - Chensong Pan A1 - Mingliang Ye A1 - Yuge Liu A1 - Shun Feng A1 - Xiaogang Jiang A1 - Guanghui Han A1 - Junjie Zhu A1 - Hanfa Zou T1 - Enrichment of Phosphopeptides by Fe3+-Immobilized Mesoporous Nanoparticles of MCM-41 for MALDI and Nano-LC-MS/MS Analysis JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2006 SP - 3114 EP - 3124 VL - 5 IS - 11 UR - http://dx.doi.org/10.1021/pr0600125 ER - TY - JOUR A1 - Sergey Pevtsov A1 - Irina Fedulova A1 - Hamid Mirzaei A1 - Charles Buck A1 - Xiang Zhang T1 - Performance Evaluation of Existing De Novo Sequencing Algorithms JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2006 SP - 3018 EP - 3028 VL - 5 IS - 11 UR - http://dx.doi.org/10.1021/pr060222h ER - TY - JOUR A1 - Zhouxin Shen A1 - Elizabeth J. Want A1 - Wei Chen A1 - William Keating A1 - William Nussbaumer A1 - Richard Moore A1 - Thomas M. Gentle A1 - Gary Siuzdak T1 - Sepsis Plasma Protein Profiling with Immunodepletion, Three-Dimensional Liquid Chromatography Tandem Mass Spectrometry, and Spectrum Counting JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2006 SP - 3154 EP - 3160 VL - 5 IS - 11 UR - http://dx.doi.org/10.1021/pr060327k ER - TY - JOUR A1 - Roux MM A1 - Townley IK A1 - Raisch M A1 - Reade A A1 - Bradham C A1 - Humphreys G A1 - Gunaratne HJ A1 - Killian CE A1 - Moy G A1 - Su YH A1 - Ettensohn CA A1 - Wilt F A1 - Vacquier VD A1 - Burke RD A1 - Wessel G A1 - Foltz KR T1 - A functional genomic and proteomic perspective of sea urchin calcium signaling and egg activation JO - Dev Biol Y1 - 2006 SP - 416 EP - 33 VL - 300 IS - 1 UR - http://dx.doi.org/10.1016/j.ydbio.2006.09.006 ER - TY - JOUR A1 - Elisabet Carlsohn A1 - Johanna Nyström A1 - Hasse Karlsson A1 - Ann-Mari Svennerholm A1 - Carol L. Nilsson T1 - Characterization of the Outer Membrane Protein Profile from Disease-Related Helicobacter pylori Isolates by Subcellular Fractionation and Nano-LC FT-ICR MS Analysis JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2006 SP - 3197 EP - 3204 VL - 5 IS - 11 UR - http://dx.doi.org/10.1021/pr060181p ER - TY - JOUR A1 - Stuhler K A1 - Koper K A1 - Pfeiffer K A1 - Tagariello A A1 - Souquet M A1 - Schwarte-Waldhoff I A1 - Hahn SA A1 - Schmiegel W A1 - Meyer HE T1 - Differential proteome analysis of colon carcinoma cell line SW480 after reconstitution of the tumour suppressor Smad4 JO - Anal Bioanal Chem Y1 - 2006 SP - 1603 EP - 12 VL - 386 IS - 6 UR - http://dx.doi.org/10.1007/s00216-006-0803-9 ER - TY - JOUR A1 - Michael J. Dunn T1 - PROTEOMICS - Clinical Applications Call for Reviews JO - Y1 - SP - EP - VL - IS - UR - http://dx.doi.org/10.1002/pmic.200690127 ER - TY - JOUR A1 - Stephen J. Valentine A1 - Manolo D. Plasencia A1 - Xiaoyun Liu A1 - Meera Krishnan A1 - Stephen Naylor A1 - Harold R. Udseth A1 - Richard D. Smith A1 - David E. Clemmer T1 - Toward Plasma Proteome Profiling with Ion Mobility-Mass Spectrometry JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2006 SP - 2977 EP - 2984 VL - 5 IS - 11 UR - http://dx.doi.org/10.1021/pr060232i ER - TY - JOUR A1 - Kurono S A1 - Kurono T A1 - Komori N A1 - Niwayama S A1 - Matsumoto H T1 - Quantitative proteome analysis using D-labeled N-ethylmaleimide and (13)C-labeled iodoacetanilide by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry JO - Bioorg Med Chem Y1 - 2006 SP - 8197 EP - 209 VL - 14 IS - 24 UR - http://dx.doi.org/10.1016/j.bmc.2006.09.023 ER - TY - JOUR A1 - Rahimi F A1 - Shepherd CE A1 - Halliday GM A1 - Geczy CL A1 - Raftery MJ T1 - Antigen-epitope retrieval to facilitate proteomic analysis of formalin-fixed archival brain tissue JO - Anal Chem Y1 - 2006 SP - 7216 EP - 21 VL - 78 IS - 20 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17037924&dopt=Abstract ER - TY - JOUR A1 - Alon Savidor A1 - Ryan S. Donahoo A1 - Oscar Hurtado-Gonzales A1 - Nathan C. VerBerkmoes A1 - Manesh B. Shah A1 - Kurt H. Lamour A1 - W. Hayes McDonald T1 - Expressed Peptide Tags: An Additional Layer of Data for Genome Annotation JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2006 SP - 3048 EP - 3058 VL - 5 IS - 11 UR - http://dx.doi.org/10.1021/pr060134x ER - TY - JOUR A1 - Regan C. Taylor and Jens R. Coorssen T1 - Proteome Resolution by Two-Dimensional Gel Electrophoresis Varies with the Commercial Source of IPG Strips JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2006 SP - 2919 EP - 2927 VL - 5 IS - 11 UR - http://dx.doi.org/10.1021/pr060298d ER - TY - JOUR A1 - Urban A. Kiernan A1 - Dobrin Nedelkov A1 - Randall W. Nelson T1 - Multiplexed Mass Spectrometric Immunoassay in Biomarker Research: A Novel Approach to the Determination of a Myocardial Infarct JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2006 SP - 2928 EP - 2934 VL - 5 IS - 11 UR - http://dx.doi.org/10.1021/pr060062+ ER - TY - JOUR A1 - Okamoto H A1 - Li J A1 - Vortmeyer AO A1 - Jaffe H A1 - Lee YS A1 - Glasker S A1 - Sohn TS A1 - Zeng W A1 - Ikejiri B A1 - Proescholdt MA A1 - Mayer C A1 - Weil RJ A1 - Oldfield EH A1 - Zhuang Z T1 - Comparative proteomic profiles of meningioma subtypes JO - Cancer Res Y1 - 2006 SP - 10199 EP - 204 VL - 66 IS - 20 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17047085&dopt=Abstract ER - TY - JOUR A1 - Francesca Zappacosta A1 - Therese S. Collingwood A1 - Michael J. Huddleston A1 - Roland S. Annan T1 - A Quantitative Results-driven Approach to Analyzing Multisite Protein Phosphorylation: The Phosphate-dependent Phosphorylation Profile of the Transcription Factor Pho4 JO - Mol Cell Proteomics Y1 - 2006 SP - 2019 EP - 2030 VL - 5 IS - 11 UR - http://www.mcponline.org/cgi/content/abstract/5/11/2019?etoc ER - TY - JOUR A1 - Jones AM A1 - Thomas V A1 - Bennett MH A1 - Mansfield J A1 - Grant M T1 - Modifications to the Arabidopsis defense Proteome Occur Prior to Significant Transcriptional Change in Response to Inoculation with Pseudomonas syringae JO - Plant Physiol Y1 - 2006 SP - 1603 EP - 20 VL - 142 IS - 4 UR - http://dx.doi.org/10.1104/pp.106.086231 ER - TY - JOUR A1 - Eric Bertrand A1 - Christine Fritsch A1 - Sigrid Diether A1 - George Lambrou A1 - Dieter Muller A1 - Frank Schaeffel A1 - Patrick Schindler A1 - Katrina L. Schmid A1 - Jan van Oostrum A1 - Hans Voshol T1 - Identification of Apolipoprotein A-I as a "STOP" Signal for Myopia JO - Mol Cell Proteomics Y1 - 2006 SP - 2158 EP - 2166 VL - 5 IS - 11 UR - http://www.mcponline.org/cgi/content/abstract/5/11/2158?etoc ER - TY - JOUR A1 - Pierre Chaurand A1 - Jeremy L. Norris A1 - D. Shannon Cornett A1 - James A. Mobley A1 - Richard M. Caprioli T1 - New Developments in Profiling and Imaging of Proteins from Tissue Sections by MALDI Mass Spectrometry JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2006 SP - 2889 EP - 2900 VL - 5 IS - 11 UR - http://dx.doi.org/10.1021/pr060346u ER - TY - JOUR A1 - Noo ME A1 - Deelder A A1 - Werff M A1 - Ozalp A A1 - Mertens B A1 - Tollenaar R T1 - Maldi-tof serum protein profiling for the detection of breast cancer JO - Onkologie Y1 - 2006 SP - 501 EP - 6 VL - 29 IS - 11 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17068384&dopt=Abstract ER - TY - JOUR A1 - Giri AP A1 - Wunsche H A1 - Mitra S A1 - Zavala JA A1 - Muck A A1 - Svatos A A1 - Baldwin IT T1 - Molecular Interactions between the Specialist Herbivore Manduca sexta (Lepidoptera, Sphingidae) and Its Natural Host Nicotiana attenuata. VII. Changes in the Plant's proteomes JO - Plant Physiol Y1 - 2006 SP - 1621 EP - 41 VL - 142 IS - 4 UR - http://dx.doi.org/10.1104/pp.106.088781 ER - TY - JOUR A1 - Nie L A1 - Wu G A1 - Zhang W T1 - Correlation of mRNA expression and protein abundance affected by multiple sequence features related to translational efficiency in Desulfovibrio vulgaris: A quantitative analysis JO - Genetics Y1 - 2006 SP - 2229 EP - 43 VL - 174 IS - 4 UR - http://dx.doi.org/10.1534/genetics.106.065862 ER - TY - JOUR A1 - Phan JH A1 - Quo CF A1 - Wang MD T1 - Chapter 4 Functional genomics and proteomics in the clinical neurosciences: data mining and bioinformatics JO - Prog Brain Res Y1 - 2006 SP - 83 EP - 108 VL - 158 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17027692&dopt=Abstract ER - TY - JOUR A1 - Daniels KM A1 - Webb KE Jr A1 - McGilliard ML A1 - Meyer MJ A1 - Van Amburgh ME A1 - Akers RM T1 - Effects of body weight and nutrition on mammary protein expression profiles in Holstein heifers JO - J Dairy Sci Y1 - 2006 SP - 4276 EP - 88 VL - 89 IS - 11 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17033015&dopt=Abstract ER - TY - JOUR A1 - Mark J. Sartain A1 - Richard A. Slayden A1 - Krishna K. Singh A1 - Suman Laal A1 - andJohn T. Belisle T1 - Disease State Differentiation and Identification of Tuberculosis Biomarkers via Native Antigen Array Profiling JO - Mol Cell Proteomics Y1 - 2006 SP - 2102 EP - 2113 VL - 5 IS - 11 UR - http://www.mcponline.org/cgi/content/abstract/5/11/2102?etoc ER - TY - JOUR A1 - Opii WO A1 - Joshi G A1 - Head E A1 - Milgram NW A1 - Muggenburg BA A1 - Klein JB A1 - Pierce WM A1 - Cotman CW A1 - Butterfield DA T1 - Proteomic identification of brain proteins in the canine model of human aging following a long-term treatment with antioxidants and a program of behavioral enrichment: Relevance to Alzheimer's disease JO - Y1 - SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.neurobiolaging.2006.09.012 ER - TY - JOUR A1 - Tjalsma H A1 - Pluk W A1 - van den Heuvel LP A1 - Peters WH A1 - Roelofs R A1 - Swinkels DW T1 - Proteomic inventory of "Anchorless" proteins on the colon adenocarcinoma cell surface JO - Biochim Biophys Acta Y1 - 2006 SP - 1607 EP - 17 VL - 1764 IS - 10 UR - http://dx.doi.org/10.1016/j.bbapap.2006.09.002 ER - TY - JOUR A1 - Donghee Cho A1 - Nackmoon Sung A1 - Michael T. Collins T1 - Identification of proteins of potential diagnostic value for bovine paratuberculosis JO - PROTEOMICS Y1 - 2006 SP - 5785 EP - 5794 VL - 6 IS - 21 UR - http://dx.doi.org/10.1002/pmic.200600207 ER - TY - JOUR A1 - Claire R. Davies A1 - Joanna S. Morris A1 - Matthew R. Griffiths A1 - Martin J. Page A1 - Andrew Pitt A1 - Torsten Stein A1 - Barry A. Gusterson T1 - Proteomic analysis of the mouse mammary gland is a powerful tool to identify novel proteins that are differentially expressed during mammary development JO - PROTEOMICS Y1 - 2006 SP - 5694 EP - 5704 VL - 6 IS - 21 UR - http://dx.doi.org/10.1002/pmic.200600202 ER - TY - JOUR A1 - Kultima K A1 - Scholz B A1 - Alm H A1 - Skold K A1 - Svensson M A1 - Crossman AR A1 - Bezard E A1 - Andren PE A1 - Lonnstedt I T1 - Normalization and expression changes in predefined sets of proteins using 2D gel electrophoresis: A proteomic study of L-DOPA induced dyskinesia in an animal model of Parkinsons disease using DIGE JO - Y1 - SP - EP - VL - IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17067368&dopt=Abstract ER - TY - JOUR A1 - Delphine Pflieger A1 - Sandrine Chabane A1 - Olivier Gaillard A1 - Bruno Alain Bernard A1 - Patrick Ducoroy A1 - Jean Rossier A1 - Joëlle Vinh T1 - Comparative proteomic analysis of extracellular matrix proteins secreted by two types of skin fibroblasts JO - PROTEOMICS Y1 - 2006 SP - 5868 EP - 5879 VL - 6 IS - 21 UR - http://dx.doi.org/10.1002/pmic.200402040 ER - TY - JOUR A1 - Xu P A1 - Peng J T1 - Dissecting the ubiquitin pathway by mass spectrometry JO - Biochim Biophys Acta Y1 - 2006 SP - 1940 EP - 7 VL - 1764 IS - 12 UR - http://dx.doi.org/10.1016/j.bbapap.2006.09.004 ER - TY - JOUR A1 - Anja Tabbert A1 - Ferdinand Kappes A1 - Rolf Knippers A1 - Josef Kellermann A1 - Friedrich Lottspeich A1 - Elisa Ferrando-May T1 - Hypophosphorylation of the architectural chromatin protein DEK in death-receptor-induced apoptosis revealed by the isotope coded protein label proteomic platform JO - PROTEOMICS Y1 - 2006 SP - 5758 EP - 5772 VL - 6 IS - 21 UR - http://dx.doi.org/10.1002/pmic.200600197 ER - TY - JOUR A1 - Saleem RA A1 - Smith JJ A1 - Aitchison JD T1 - Proteomics of the peroxisome JO - Biochim Biophys Acta Y1 - 2006 SP - 1541 EP - 51 VL - 1763 IS - 12 UR - http://dx.doi.org/10.1016/j.bbamcr.2006.09.005 ER - TY - JOUR A1 - Zhenpeng Li A1 - Michael Kreutzer A1 - Stefan Mikkat A1 - Nikica Mi?e A1 - Michael O. Glocker A1 - Brigitte M. Pützer T1 - Proteomic analysis of the E2F1 response in p53-negative cancer cells: New aspects in the regulation of cell survival and death JO - PROTEOMICS Y1 - 2006 SP - 5735 EP - 5745 VL - 6 IS - 21 UR - http://dx.doi.org/10.1002/pmic.200600290 ER - TY - JOUR A1 - Yao Y A1 - Yang YW A1 - Liu JY T1 - An efficient protein preparation for proteomic analysis of developing cotton fibers by 2-DE JO - Electrophoresis Y1 - 2006 SP - 4559 EP - 69 VL - 27 IS - 22 UR - http://dx.doi.org/10.1002/elps.200600111 ER - TY - JOUR A1 - Wolff S A1 - Antelmann H A1 - Albrecht D A1 - Becher D A1 - Bernhardt J A1 - Bron S A1 - Buttner K A1 - van Dijl JM A1 - Eymann C A1 - Otto A A1 - Tam LT A1 - Hecker M T1 - Towards the entire proteome of the model bacterium Bacillus subtilis by gel-based and gel-free approaches JO - Y1 - SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.jchromb.2006.09.029 ER - TY - JOUR A1 - Chibani K A1 - Ali-Rachedi S A1 - Job C A1 - Job D A1 - Jullien M A1 - Grappin P T1 - Proteomic Analysis of Seed Dormancy in Arabidopsis JO - Plant Physiol Y1 - 2006 SP - 1493 EP - 510 VL - 142 IS - 4 UR - http://dx.doi.org/10.1104/pp.106.087452 ER - TY - JOUR A1 - San-Yuan Huang A1 - Yu-Hui Chen A1 - Shih-Hua Teng A1 - I-Chung Chen A1 - Lin-Lin Ho A1 - Ching-Fu Tu T1 - Protein expression of lymphocytes in HLA-DR transgenic pigs by a proteomic approach JO - PROTEOMICS Y1 - 2006 SP - 5815 EP - 5825 VL - 6 IS - 21 UR - http://dx.doi.org/10.1002/pmic.200600054 ER - TY - JOUR A1 - Vitale AM A1 - Calvert ME A1 - Mallavarapu M A1 - Yurttas P A1 - Perlin J A1 - Herr J A1 - Coonrod S T1 - Proteomic profiling of murine oocyte maturation JO - Mol Reprod Dev Y1 - 2007 SP - 608 EP - 16 VL - 74 IS - 5 UR - http://dx.doi.org/10.1002/mrd.20648 ER - TY - JOUR A1 - Hemby SE T1 - Chapter 9 Assessment of genome and proteome profiles in cocaine abuse JO - Prog Brain Res Y1 - 2006 SP - 173 EP - 95 VL - 158 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17027697&dopt=Abstract ER - TY - JOUR A1 - Gozal YM A1 - Cheng D A1 - Duong DM A1 - Lah JJ A1 - Levey AI A1 - Peng J T1 - Merger of laser capture microdissection and mass spectrometry: a window into the amyloid plaque proteome JO - Methods Enzymol Y1 - 2006 SP - 77 EP - 93 VL - 412 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17046653&dopt=Abstract ER - TY - JOUR A1 - Fietta AM A1 - Bardoni AM A1 - Salvini R A1 - Passadore I A1 - Morosini M A1 - Cavagna L A1 - Codullo V A1 - Pozzi E A1 - Meloni F A1 - Montecucco C T1 - Analysis of bronchoalveolar lavage fluid proteome from systemic sclerosis patients with or without functional, clinical and radiological signs of lung fibrosis JO - Y1 - SP - EP - VL - IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17044913&dopt=Abstract ER - TY - JOUR A1 - Schabacker DS A1 - Stefanovska I A1 - Gavin I A1 - Pedrak C A1 - Chandler DP T1 - Protein array staining methods for undefined protein content, manufacturing quality control, and performance validation JO - Anal Biochem Y1 - 2006 SP - 84 EP - 93 VL - 359 IS - 1 UR - http://dx.doi.org/10.1016/j.ab.2006.08.035 ER - TY - JOUR A1 - Hans Zischka A1 - Ralf J. Braun A1 - Enrico P. Marantidis A1 - Dietmute Buringer A1 - Carsten Bornhovd A1 - Stefanie M. Hauck A1 - Oliver Demmer A1 - Christian J. Gloeckner A1 - Andreas S. Reichert A1 - Frank Madeo A1 - Marius Ueffing T1 - Differential Analysis of Saccharomyces cerevisiae Mitochondria by Free Flow Electrophoresis JO - Mol Cell Proteomics Y1 - 2006 SP - 2185 EP - 2200 VL - 5 IS - 11 UR - http://www.mcponline.org/cgi/content/abstract/5/11/2185?etoc ER - TY - JOUR A1 - Ecale Zhou CL A1 - Lam MW A1 - Smith JR A1 - Zemla AT A1 - Dyer MD A1 - Kuczmarski TA A1 - Vitalis EA A1 - Slezak TR T1 - MannDB - A microbial database of automated protein sequence analyses and evidence integration for protein characterization JO - Y1 - SP - EP - VL - IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17044936&dopt=Abstract ER - TY - JOUR A1 - Horvatovich P A1 - Govorukhina N A1 - Bischoff R T1 - Biomarker discovery by proteomics: challenges not only for the analytical chemist JO - Analyst Y1 - 2006 SP - 1193 EP - 6 VL - 131 IS - 11 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17066185&dopt=Abstract ER - TY - JOUR A1 - Jahnukainen T A1 - Malehorn D A1 - Sun M A1 - Lyons-Weiler J A1 - Bigbee W A1 - Gupta G A1 - Shapiro R A1 - Randhawa PS A1 - Pelikan R A1 - Hauskrecht M A1 - Vats A T1 - Proteomic Analysis of Urine in Kidney Transplant Patients with BK Virus Nephropathy JO - J Am Soc Nephrol Y1 - 2006 SP - 3248 EP - 56 VL - 17 IS - 11 UR - http://dx.doi.org/10.1681/ASN.2006050437 ER - TY - JOUR A1 - Tolstrup J A1 - Krause E A1 - Tannich E A1 - Bruchhaus I T1 - Proteomic analysis of Entamoeba histolytica JO - Parasitology Y1 - 2007 SP - 289 EP - 98 VL - 134 IS - Pt 2 UR - http://dx.doi.org/10.1017/S0031182006001442 ER - TY - JOUR A1 - Krueger KE T1 - The potential of serum proteomics for detection of cancer: promise or only hope? JO - Onkologie Y1 - 2006 SP - 498 EP - 9 VL - 29 IS - 11 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17068383&dopt=Abstract ER - TY - JOUR A1 - Rachel Weitzdörfer A1 - Harald Höger A1 - Arnold Pollak A1 - Gert Lubec T1 - Changes of Hippocampal Protein Levels during Postnatal Brain Development in the Rat JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2006 SP - 3205 EP - 3212 VL - 5 IS - 11 UR - http://dx.doi.org/10.1021/pr0602545 ER - TY - JOUR A1 - Hummon AB A1 - Richmond TA A1 - Verleyen P A1 - Baggerman G A1 - Huybrechts J A1 - Ewing MA A1 - Vierstraete E A1 - Rodriguez-Zas SL A1 - Schoofs L A1 - Robinson GE A1 - Sweedler JV T1 - From the genome to the proteome: uncovering peptides in the Apis brain JO - Science Y1 - 2006 SP - 647 EP - 9 VL - 314 IS - 5799 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17068263&dopt=Abstract ER - TY - JOUR A1 - Potra FA A1 - Liu X T1 - Aligning families of two-dimensional gels by a combined multiresolution forward-inverse transformation approach JO - J Comput Biol Y1 - 2006 SP - 1384 EP - 95 VL - 13 IS - 7 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17037965&dopt=Abstract ER - TY - JOUR A1 - Ivona Pavkova A1 - Marketa Reichelova A1 - Pär Larsson A1 - Martin Hubalek A1 - Jana Vackova A1 - Ake Forsberg A1 - Jiri Stulik T1 - Comparative Proteome Analysis of Fractions Enriched for Membrane-Associated Proteins from Francisella tularensis Subsp. tularensis and F. tularensis Subsp. holarctica Strains JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2006 SP - 3125 EP - 3134 VL - 5 IS - 11 UR - http://dx.doi.org/10.1021/pr0601887 ER - TY - JOUR A1 - Higashi Y A1 - Hirai MY A1 - Fujiwara T A1 - Naito S A1 - Noji M A1 - Saito K T1 - Proteomic and transcriptomic analysis of Arabidopsis seeds: molecular evidence for successive processing of seed proteins and its implication in the stress response to sulfur nutrition JO - Plant J Y1 - 2006 SP - 557 EP - 71 VL - 48 IS - 4 UR - http://dx.doi.org/10.1111/j.1365-313X.2006.02900.x ER - TY - JOUR A1 - Wongtrakoongate P A1 - Mongkoldhumrongkul N A1 - Chaijan S A1 - Kamchonwongpaisan S A1 - Tungpradabkul S T1 - Comparative proteomic profiles and the potential markers between Burkholderia pseudomallei and Burkholderia thailandensis JO - Mol Cell Probes Y1 - 2007 SP - 81 EP - 91 VL - 21 IS - 2 UR - http://dx.doi.org/10.1016/j.mcp.2006.08.006 ER - TY - JOUR A1 - Su Y A1 - Shen J A1 - Qian H A1 - Ma H A1 - Ji J A1 - Ma H A1 - Ma L A1 - Zhang W A1 - Meng L A1 - Li Z A1 - Wu J A1 - Jin G A1 - Zhang J A1 - Shou C T1 - Diagnosis of gastric cancer using decision tree classification of mass spectral data JO - Y1 - SP - EP - VL - IS - UR - http://dx.doi.org/10.1111/j.1349-7006.2006.00339.x ER - TY - JOUR A1 - Duan ZG A1 - Yan XJ A1 - He XZ A1 - Zhou H A1 - Chen P A1 - Cao R A1 - Xiong JX A1 - Hu WJ A1 - Wang XC A1 - Liang SP T1 - Extraction and protein component analysis of venom from the dissected venom glands of Latrodectus tredecimguttatus JO - Comp Biochem Physiol B Biochem Mol Biol Y1 - 2006 SP - 350 EP - 7 VL - 145 IS - 3-4 UR - http://dx.doi.org/10.1016/j.cbpb.2006.08.006 ER - TY - JOUR A1 - Kaplan N A1 - Linial M T1 - ProtoBee: Hierarchical classification and annotation of the honey bee proteome JO - Genome Res Y1 - 2006 SP - 1431 EP - 8 VL - 16 IS - 11 UR - http://dx.doi.org/10.1101/gr.4916306 ER - TY - JOUR A1 - Shang-Ting Tsai A1 - Chiu Wen Chen A1 - Ling Chu Lora Huang A1 - Min-Chia Huang A1 - Chung-Hsuan Chen A1 - Yi-Sheng Wang T1 - Simultaneous Mass Analysis of Positive and Negative Ions Using a Dual-Polarity Time-of-Flight Mass Spectrometer JO - ANALYTICAL CHEMISTRY Y1 - 2006 SP - 7729 EP - 7734 VL - 78 IS - 22 UR - http://dx.doi.org/10.1021/ac061213v ER - TY - JOUR A1 - Derek P. Thomas A1 - Stefano P. Bachmann A1 - Jose L. Lopez-Ribot T1 - Proteomics for the analysis of the Candida albicans biofilm lifestyle JO - PROTEOMICS Y1 - 2006 SP - 5795 EP - 5804 VL - 6 IS - 21 UR - http://dx.doi.org/10.1002/pmic.200600332 ER - TY - JOUR A1 - Hannah Johnson and Simon J Gaskell T1 - Proteomics gets faster and smarter JO - Y1 - SP - EP - VL - IS - UR - http://dx.doi.org/10.1186/gb-2006-7-11-331 ER -