TY - JOUR A1 - Higashi Y A1 - Hirai MY A1 - Fujiwara T A1 - Naito S A1 - Noji M A1 - Saito K T1 - Proteomic and transcriptomic analysis of Arabidopsis seeds: molecular evidence for successive processing of seed proteins and its implication in the stress response to sulfur nutrition JO - Plant J Y1 - 2006 SP - 557 EP - 71 VL - 48 IS - 4 UR - http://dx.doi.org/10.1111/j.1365-313X.2006.02900.x ER - TY - JOUR A1 - Markus Roessler A1 - Wolfgang Rollinger A1 - Liliana Mantovani-Endl A1 - Marie-Luise Hagmann A1 - Stefan Palme A1 - Peter Berndt A1 - Alfred M. Engel A1 - Michael Pfeffer A1 - Johann Karl A1 - Heinz Bodenmuller A1 - Josef Ruschoff A1 - Thomas Henkel A1 - Gerhard Rohr A1 - Siegbert Rossol A1 - Wolfgang Rosch A1 - H T1 - Identification of PSME3 as a Novel Serum Tumor Marker for Colorectal Cancer by Combining Two-dimensional Polyacrylamide Gel Electrophoresis with a Strictly Mass Spectrometry-based Approach for Data Analysis JO - Mol Cell Proteomics Y1 - 2006 SP - 2092 EP - 2101 VL - 5 IS - 11 UR - http://www.mcponline.org/cgi/content/abstract/5/11/2092?etoc ER - TY - JOUR A1 - An Chi A1 - Julio C. Valencia A1 - Zhang-Zhi Hu A1 - Hidenori Watabe A1 - Hiroshi Yamaguchi A1 - Nancy J. Mangini A1 - Hongzhan Huang A1 - Victor A. Canfield A1 - Keith C. Cheng A1 - Feng Yang A1 - Riichiro Abe A1 - Shoichi Yamagishi A1 - Jeffrey Shabanowitz A1 - Vincent J. Hearing A1 - Cathy Wu A1 - Ettore Appell T1 - Proteomic and Bioinformatic Characterization of the Biogenesis and Function of Melanosomes JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2006 SP - 3135 EP - 3144 VL - 5 IS - 11 UR - http://dx.doi.org/10.1021/pr060363j ER - TY - JOUR A1 - Lee DH A1 - Kim SG A1 - Park YC A1 - Nam SW A1 - Lee KH A1 - Seo JH T1 - Proteome analysis of recombinant Escherichia coli producing human glucagon-like peptide-1 JO - Y1 - SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.jchromb.2006.09.042 ER - TY - JOUR A1 - D. C. Anderson A1 - Elsie L. Campbell A1 - John C. Meeks T1 - A Soluble 3D LC/MS/MS Proteome of the Filamentous Cyanobacterium Nostoc punctiforme JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2006 SP - 3096 EP - 3104 VL - 5 IS - 11 UR - http://dx.doi.org/10.1021/pr060272m ER - TY - JOUR A1 - Claire R. Davies A1 - Joanna S. Morris A1 - Matthew R. Griffiths A1 - Martin J. Page A1 - Andrew Pitt A1 - Torsten Stein A1 - Barry A. Gusterson T1 - Proteomic analysis of the mouse mammary gland is a powerful tool to identify novel proteins that are differentially expressed during mammary development JO - PROTEOMICS Y1 - 2006 SP - 5694 EP - 5704 VL - 6 IS - 21 UR - http://dx.doi.org/10.1002/pmic.200600202 ER - TY - JOUR A1 - Hummon AB A1 - Richmond TA A1 - Verleyen P A1 - Baggerman G A1 - Huybrechts J A1 - Ewing MA A1 - Vierstraete E A1 - Rodriguez-Zas SL A1 - Schoofs L A1 - Robinson GE A1 - Sweedler JV T1 - From the genome to the proteome: uncovering peptides in the Apis brain JO - Science Y1 - 2006 SP - 647 EP - 9 VL - 314 IS - 5799 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17068263&dopt=Abstract ER - TY - JOUR A1 - Roux MM A1 - Townley IK A1 - Raisch M A1 - Reade A A1 - Bradham C A1 - Humphreys G A1 - Gunaratne HJ A1 - Killian CE A1 - Moy G A1 - Su YH A1 - Ettensohn CA A1 - Wilt F A1 - Vacquier VD A1 - Burke RD A1 - Wessel G A1 - Foltz KR T1 - A functional genomic and proteomic perspective of sea urchin calcium signaling and egg activation JO - Dev Biol Y1 - 2006 SP - 416 EP - 33 VL - 300 IS - 1 UR - http://dx.doi.org/10.1016/j.ydbio.2006.09.006 ER - TY - JOUR A1 - Chun-Ming Huang A1 - Chao-Cheng Wang A1 - Stephen Barnes A1 - Craig A. Elmets T1 - In vivo detection of secreted proteins from wounded skin using capillary ultrafiltration probes and mass spectrometric proteomics JO - PROTEOMICS Y1 - 2006 SP - 5805 EP - 5814 VL - 6 IS - 21 UR - http://dx.doi.org/10.1002/pmic.200600163 ER - TY - JOUR A1 - Eric Bertrand A1 - Christine Fritsch A1 - Sigrid Diether A1 - George Lambrou A1 - Dieter Muller A1 - Frank Schaeffel A1 - Patrick Schindler A1 - Katrina L. Schmid A1 - Jan van Oostrum A1 - Hans Voshol T1 - Identification of Apolipoprotein A-I as a "STOP" Signal for Myopia JO - Mol Cell Proteomics Y1 - 2006 SP - 2158 EP - 2166 VL - 5 IS - 11 UR - http://www.mcponline.org/cgi/content/abstract/5/11/2158?etoc ER - TY - JOUR A1 - Jones AM A1 - Thomas V A1 - Bennett MH A1 - Mansfield J A1 - Grant M T1 - Modifications to the Arabidopsis defense Proteome Occur Prior to Significant Transcriptional Change in Response to Inoculation with Pseudomonas syringae JO - Plant Physiol Y1 - 2006 SP - 1603 EP - 20 VL - 142 IS - 4 UR - http://dx.doi.org/10.1104/pp.106.086231 ER - TY - JOUR A1 - Zhenpeng Li A1 - Michael Kreutzer A1 - Stefan Mikkat A1 - Nikica Mi?e A1 - Michael O. Glocker A1 - Brigitte M. Pützer T1 - Proteomic analysis of the E2F1 response in p53-negative cancer cells: New aspects in the regulation of cell survival and death JO - PROTEOMICS Y1 - 2006 SP - 5735 EP - 5745 VL - 6 IS - 21 UR - http://dx.doi.org/10.1002/pmic.200600290 ER - TY - JOUR A1 - Alberto Bavelloni A1 - Irene Faenza A1 - Gabriella Cioffi A1 - Manuela Piazzi A1 - Daniela Parisi A1 - Ivan Matic A1 - Nadir M. Maraldi A1 - Lucio Cocco T1 - Proteomic-based analysis of nuclear signaling: PLC?1 affects the expression of the splicing factor SRp20 in Friend erythroleukemia cells JO - PROTEOMICS Y1 - 2006 SP - 5725 EP - 5734 VL - 6 IS - 21 UR - http://dx.doi.org/10.1002/pmic.200600318 ER - TY - JOUR A1 - Garcia JS A1 - Gratao PL A1 - Azevedo RA A1 - Arruda MA T1 - Metal Contamination Effects on Sunflower (Helianthus annuus L.) Growth and Protein Expression in Leaves During Development JO - J Agric Food Chem Y1 - 2006 SP - 8623 EP - 8630 VL - 54 IS - 22 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17061843&dopt=Abstract ER - TY - JOUR A1 - Duan ZG A1 - Yan XJ A1 - He XZ A1 - Zhou H A1 - Chen P A1 - Cao R A1 - Xiong JX A1 - Hu WJ A1 - Wang XC A1 - Liang SP T1 - Extraction and protein component analysis of venom from the dissected venom glands of Latrodectus tredecimguttatus JO - Comp Biochem Physiol B Biochem Mol Biol Y1 - 2006 SP - 350 EP - 7 VL - 145 IS - 3-4 UR - http://dx.doi.org/10.1016/j.cbpb.2006.08.006 ER - TY - JOUR A1 - Joko Prayitno A1 - Nijat Imin A1 - Barry G. Rolfe A1 - Ulrike Mathesius T1 - Identification of Ethylene-Mediated Protein Changes during Nodulation in Medicago truncatula Using Proteome Analysis JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2006 SP - 3084 EP - 3095 VL - 5 IS - 11 UR - http://dx.doi.org/10.1021/pr0602646 ER - TY - JOUR A1 - Jun-yong Jia A1 - Stephanie Lamer A1 - Michael Schumann A1 - Michael R. Schmidt A1 - Eberhard Krause A1 - Volker Haucke T1 - Quantitative Proteomics Analysis of Detergent-resistant Membranes from Chemical Synapses: Evidence for Cholesterol as Spatial Organizer of Synaptic Vesicle Cycling JO - Mol Cell Proteomics Y1 - 2006 SP - 2060 EP - 2071 VL - 5 IS - 11 UR - http://www.mcponline.org/cgi/content/abstract/5/11/2060?etoc ER - TY - JOUR A1 - Baptiste Leroy A1 - Gerard Toubeau A1 - Paul Falmagne A1 - Ruddy Wattiez T1 - Identification and Characterization of New Protein Chemoattractants in the Frog Skin Secretome JO - Mol Cell Proteomics Y1 - 2006 SP - 2114 EP - 2123 VL - 5 IS - 11 UR - http://www.mcponline.org/cgi/content/abstract/5/11/2114?etoc ER - TY - JOUR A1 - Kaplan N A1 - Linial M T1 - ProtoBee: Hierarchical classification and annotation of the honey bee proteome JO - Genome Res Y1 - 2006 SP - 1431 EP - 8 VL - 16 IS - 11 UR - http://dx.doi.org/10.1101/gr.4916306 ER - TY - JOUR A1 - Edita Sostaric A1 - Aristophanes S. Georgiou A1 - Chi H. Wong A1 - Paul F. Watson A1 - William V. Holt A1 - Alireza Fazeli T1 - Global Profiling of Surface Plasma Membrane Proteome of Oviductal Epithelial Cells JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2006 SP - 3029 EP - 3037 VL - 5 IS - 11 UR - http://dx.doi.org/10.1021/pr060366w ER - TY - JOUR A1 - Hiba El Hajj A1 - Emmanuelle Demey A1 - Joël Poncet A1 - Maryse Lebrun A1 - Bo Wu A1 - Nathalie Galéotti A1 - Marie Noëlle Fourmaux A1 - Odile Mercereau-Puijalon A1 - Henri Vial A1 - Gilles Labesse A1 - Jean François Dubremetz T1 - The ROP2 family of Toxoplasma gondii rhoptry proteins: Proteomic and genomic characterization and molecular modeling JO - PROTEOMICS Y1 - 2006 SP - 5773 EP - 5784 VL - 6 IS - 21 UR - http://dx.doi.org/10.1002/pmic.200600187 ER - TY - JOUR A1 - Radovan Hynek A1 - Birte Svensson A1 - Ole N rregaard Jensen A1 - Vibeke Barkholt A1 - Christine Finnie T1 - Enrichment and Identification of Integral Membrane Proteins from Barley Aleurone Layers by Reversed-Phase Chromatography, SDS-PAGE, and LC-MS/MS JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2006 SP - 3105 EP - 3113 VL - 5 IS - 11 UR - http://dx.doi.org/10.1021/pr0602850 ER - TY - JOUR A1 - Edwin Ho A1 - Andrew Hayen A1 - Marc R. Wilkins T1 - Characterisation of organellar proteomes: A guide to subcellular proteomic fractionation and analysis JO - PROTEOMICS Y1 - 2006 SP - 5746 EP - 5757 VL - 6 IS - 21 UR - http://dx.doi.org/10.1002/pmic.200600241 ER - TY - JOUR A1 - Van C. Kelly A1 - Sulee Kuy A1 - David J. Palmer A1 - Zhenzhong Xu A1 - Stephen R. Davis A1 - Garth J. Cooper T1 - Characterization of bovine seminal plasma by proteomics JO - PROTEOMICS Y1 - 2006 SP - 5826 EP - 5833 VL - 6 IS - 21 UR - http://dx.doi.org/10.1002/pmic.200500830 ER - TY - JOUR A1 - Coldham NG A1 - Randall LP A1 - Piddock LJ A1 - Woodward MJ T1 - Effect of fluoroquinolone exposure on the proteome of Salmonella enterica serovar Typhimurium JO - J Antimicrob Chemother Y1 - 2006 SP - 1145 EP - 53 VL - 58 IS - 6 UR - http://dx.doi.org/10.1093/jac/dkl413 ER - TY - JOUR A1 - Delphine Pflieger A1 - Sandrine Chabane A1 - Olivier Gaillard A1 - Bruno Alain Bernard A1 - Patrick Ducoroy A1 - Jean Rossier A1 - Joëlle Vinh T1 - Comparative proteomic analysis of extracellular matrix proteins secreted by two types of skin fibroblasts JO - PROTEOMICS Y1 - 2006 SP - 5868 EP - 5879 VL - 6 IS - 21 UR - http://dx.doi.org/10.1002/pmic.200402040 ER - TY - JOUR A1 - Giri AP A1 - Wunsche H A1 - Mitra S A1 - Zavala JA A1 - Muck A A1 - Svatos A A1 - Baldwin IT T1 - Molecular Interactions between the Specialist Herbivore Manduca sexta (Lepidoptera, Sphingidae) and Its Natural Host Nicotiana attenuata. VII. Changes in the Plant's proteomes JO - Plant Physiol Y1 - 2006 SP - 1621 EP - 41 VL - 142 IS - 4 UR - http://dx.doi.org/10.1104/pp.106.088781 ER - TY - JOUR A1 - Saleem RA A1 - Smith JJ A1 - Aitchison JD T1 - Proteomics of the peroxisome JO - Biochim Biophys Acta Y1 - 2006 SP - 1541 EP - 51 VL - 1763 IS - 12 UR - http://dx.doi.org/10.1016/j.bbamcr.2006.09.005 ER - TY - JOUR A1 - Noble J A1 - Dua RS A1 - Locke I A1 - Eeles R A1 - Gui GP A1 - Isacke CM T1 - Proteomic analysis of nipple aspirate fluid throughout the menstrual cycle in healthy pre-menopausal women JO - Y1 - SP - EP - VL - IS - UR - http://dx.doi.org/10.1007/s10549-006-9402-x ER - TY - JOUR A1 - Megumi Hato A1 - Hiroaki Nakagawa A1 - Masaki Kurogochi A1 - Tomoya O. Akama A1 - Jamey D. Marth A1 - Michiko N. Fukuda A1 - Shin-Ichiro Nishimura T1 - Unusual N-Glycan Structures in {alpha}-Mannosidase II/IIx Double Null Embryos Identified by a Systematic Glycomics Approach Based on Two-dimensional LC Mapping and Matrix-dependent Selective Fragmentation Method in MALDI-TOF/TOF Mass Spectrometry JO - Mol Cell Proteomics Y1 - 2006 SP - 2146 EP - 2157 VL - 5 IS - 11 UR - http://www.mcponline.org/cgi/content/abstract/5/11/2146?etoc ER - TY - JOUR A1 - Francesca Zappacosta A1 - Therese S. Collingwood A1 - Michael J. Huddleston A1 - Roland S. Annan T1 - A Quantitative Results-driven Approach to Analyzing Multisite Protein Phosphorylation: The Phosphate-dependent Phosphorylation Profile of the Transcription Factor Pho4 JO - Mol Cell Proteomics Y1 - 2006 SP - 2019 EP - 2030 VL - 5 IS - 11 UR - http://www.mcponline.org/cgi/content/abstract/5/11/2019?etoc ER - TY - JOUR A1 - San-Yuan Huang A1 - Yu-Hui Chen A1 - Shih-Hua Teng A1 - I-Chung Chen A1 - Lin-Lin Ho A1 - Ching-Fu Tu T1 - Protein expression of lymphocytes in HLA-DR transgenic pigs by a proteomic approach JO - PROTEOMICS Y1 - 2006 SP - 5815 EP - 5825 VL - 6 IS - 21 UR - http://dx.doi.org/10.1002/pmic.200600054 ER - TY - JOUR A1 - Derek P. Thomas A1 - Stefano P. Bachmann A1 - Jose L. Lopez-Ribot T1 - Proteomics for the analysis of the Candida albicans biofilm lifestyle JO - PROTEOMICS Y1 - 2006 SP - 5795 EP - 5804 VL - 6 IS - 21 UR - http://dx.doi.org/10.1002/pmic.200600332 ER - TY - JOUR A1 - Carroll J A1 - Fearnley IM A1 - Walker JE T1 - Definition of the mitochondrial proteome by measurement of molecular masses of membrane proteins JO - Proc Natl Acad Sci U S A Y1 - 2006 SP - 16170 EP - 5 VL - 103 IS - 44 UR - http://dx.doi.org/10.1073/pnas.0607719103 ER - TY - JOUR A1 - Anja Tabbert A1 - Ferdinand Kappes A1 - Rolf Knippers A1 - Josef Kellermann A1 - Friedrich Lottspeich A1 - Elisa Ferrando-May T1 - Hypophosphorylation of the architectural chromatin protein DEK in death-receptor-induced apoptosis revealed by the isotope coded protein label proteomic platform JO - PROTEOMICS Y1 - 2006 SP - 5758 EP - 5772 VL - 6 IS - 21 UR - http://dx.doi.org/10.1002/pmic.200600197 ER - TY - JOUR A1 - Hong Wang and David L. Brautigan T1 - Peptide Microarray Analysis of Substrate Specificity of the Transmembrane Ser/Thr Kinase KPI-2 Reveals Reactivity with Cystic Fibrosis Transmembrane Conductance Regulator and Phosphorylase JO - Mol Cell Proteomics Y1 - 2006 SP - 2124 EP - 2130 VL - 5 IS - 11 UR - http://www.mcponline.org/cgi/content/abstract/5/11/2124?etoc ER - TY - JOUR A1 - Chibani K A1 - Ali-Rachedi S A1 - Job C A1 - Job D A1 - Jullien M A1 - Grappin P T1 - Proteomic Analysis of Seed Dormancy in Arabidopsis JO - Plant Physiol Y1 - 2006 SP - 1493 EP - 510 VL - 142 IS - 4 UR - http://dx.doi.org/10.1104/pp.106.087452 ER -