TY - JOUR A1 - Uno Y A1 - Fujiyuki T A1 - Morioka M A1 - Takeuchi H A1 - Kubo T T1 - Identification of proteins whose expression is up- or down-regulated in the mushroom bodies in the honeybee brain using proteomics JO - FEBS Lett Y1 - 2007 SP - 97 EP - 101 VL - 581 IS - 1 UR - http://dx.doi.org/10.1016/j.febslet.2006.12.004 ER - TY - JOUR A1 - Peter Kleinert A1 - Thomas Kuster A1 - Daniel Arnold A1 - Jaak Jaeken A1 - Claus W. Heizmann A1 - Heinz Troxler T1 - Effect of glycosylation on the protein pattern in 2-D-gel electrophoresis JO - PROTEOMICS Y1 - 2007 SP - 15 EP - 22 VL - 7 IS - 1 UR - http://dx.doi.org/10.1002/pmic.200600297 ER - TY - JOUR A1 - Myung-Hwa Cha A1 - TaiYoun Rhim A1 - Kyung Hun Kim A1 - An-Soo Jang A1 - Young-Ki Paik A1 - Choon-Sik Park T1 - Proteomic Identification of Macrophage Migration-inhibitory Factor upon Exposure to TiO2 Particles JO - Mol Cell Proteomics Y1 - 2007 SP - 56 EP - 63 VL - 6 IS - 1 UR - http://www.mcponline.org/cgi/content/abstract/6/1/56?etoc ER - TY - JOUR A1 - Zhiyin Xun A1 - Renã A. Sowell A1 - Thomas C. Kaufman A1 - David E. Clemmer T1 - Protein Expression in a Drosophila Model of Parkinson's Disease JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2007 SP - 348 EP - 357 VL - 6 IS - 1 UR - http://dx.doi.org/10.1021/pr060488o ER - TY - JOUR A1 - Li QZ A1 - Zhou J A1 - Wandstrat AE A1 - Carr-Johnson F A1 - Branch V A1 - Karp DR A1 - Mohan C A1 - Wakeland EK A1 - Olsen NJ T1 - Protein array autoantibody profiles for insights into systemic lupus erythematosus and incomplete lupus syndromes JO - Clin Exp Immunol Y1 - 2007 SP - 60 EP - 70 VL - 147 IS - 1 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17177964&dopt=Abstract ER - TY - JOUR A1 - Cecilia Anaya A1 - Nadia Church A1 - Janina P. Lewis T1 - Detection and identification of bacterial cell surface proteins by fluorescent labeling JO - PROTEOMICS Y1 - 2007 SP - 215 EP - 219 VL - 7 IS - 2 UR - http://dx.doi.org/10.1002/pmic.200600175 ER - TY - JOUR A1 - Boccardi C A1 - Cecchettini A A1 - Caselli A A1 - Camici G A1 - Evangelista M A1 - Mercatanti A A1 - Rainaldi G A1 - Citti L T1 - A proteomic approach to the investigation of early events involved in vascular smooth muscle cell activation JO - Y1 - SP - EP - VL - IS - UR - http://dx.doi.org/10.1007/s00441-006-0357-3 ER - TY - JOUR A1 - Lud?k Eyer A1 - Roman Pant??ek A1 - Zbyn?k Zdráhal A1 - Hana Kone?ná A1 - Petr Ka?párek A1 - Vladislava R??i?ková A1 - Lenka Hernychová A1 - Jan Preisler A1 - Ji?í Do?ka? T1 - Structural protein analysis of the polyvalent staphylococcal bacteriophage 812 JO - PROTEOMICS Y1 - 2007 SP - 64 EP - 72 VL - 7 IS - 1 UR - http://dx.doi.org/10.1002/pmic.200600280 ER - TY - JOUR A1 - Debrincat MA A1 - Zhang JG A1 - Willson TA A1 - Silke J A1 - Connolly LM A1 - Simpson RJ A1 - Alexander WS A1 - Nicola NA A1 - Kile BT A1 - Hilton DJ T1 - Ankyrin repeat and SOCS box containing protein ASB-9 targets creatine kinase B for degradation JO - J Biol Chem Y1 - 2007 SP - 4728 EP - 37 VL - 282 IS - 7 UR - http://dx.doi.org/10.1074/jbc.M609164200 ER - TY - JOUR A1 - Johnson JD A1 - Bernal-Mizrachi E A1 - Alejandro EU A1 - Han Z A1 - Kalynyak TB A1 - Li H A1 - Beith JL A1 - Gross J A1 - Warnock GL A1 - Townsend RR A1 - Permutt MA A1 - Polonsky KS T1 - Insulin protects islets from apoptosis via Pdx1 and specific changes in the human islet proteome JO - Proc Natl Acad Sci U S A Y1 - 2006 SP - 19575 EP - 80 VL - 103 IS - 51 UR - http://dx.doi.org/10.1073/pnas.0604208103 ER - TY - JOUR A1 - Butterfield DA A1 - Gnjec A A1 - Poon HF A1 - Castegna A A1 - Pierce WM A1 - Klein JB A1 - Martins RN T1 - Redox proteomics identification of oxidatively modified brain proteins in inherited Alzheimer's disease: An initial assessment JO - J Alzheimers Dis Y1 - 2006 SP - 391 EP - 7 VL - 10 IS - 4 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17183150&dopt=Abstract ER - TY - JOUR A1 - Darde VM A1 - Barderas MG A1 - Vivanco F T1 - Depletion of high-abundance proteins in plasma by immunoaffinity subtraction for two-dimensional difference gel electrophoresis analysis JO - Methods Mol Biol Y1 - 2006 SP - 351 EP - 64 VL - 357 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17172701&dopt=Abstract ER - TY - JOUR A1 - Jacek R. Wisniewski A1 - Alexandre Zougman A1 - Sonja Kruger A1 - Matthias Mann T1 - Mass Spectrometric Mapping of Linker Histone H1 Variants Reveals Multiple Acetylations, Methylations, and Phosphorylation as Well as Differences between Cell Culture and Tissue JO - Mol Cell Proteomics Y1 - 2007 SP - 72 EP - 87 VL - 6 IS - 1 UR - http://www.mcponline.org/cgi/content/abstract/6/1/72?etoc ER - TY - JOUR A1 - Feng Tao T1 - Fourth International Conference on High-Pressure Biosciences and Biotechnology JO - Expert Review of Proteomics Y1 - 2006 SP - 579 EP - 580 VL - 3 IS - 6 UR - http://dx.doi.org/10.1586/14789450.3.6.579 ER - TY - JOUR A1 - Martinet W T1 - Western array analysis of human atherosclerotic plaques JO - Methods Mol Biol Y1 - 2006 SP - 165 EP - 78 VL - 357 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17172687&dopt=Abstract ER - TY - JOUR A1 - Bart Samyn A1 - Kjell Sergeant A1 - Sebastien Carpentier A1 - Griet Debyser A1 - Bart Panis A1 - Rony Swennen A1 - Jozef Van Beeumen T1 - Functional Proteome Analysis of the Banana Plant (Musa spp.) Using de Novo Sequence Analysis of Derivatized Peptides JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2007 SP - 70 EP - 80 VL - 6 IS - 1 UR - http://dx.doi.org/10.1021/pr0601943 ER - TY - JOUR A1 - Bergmann A1 - Frank T.; Vallabhajosyula A1 - Ravishankar R.; Sauro A1 - Herbert M T1 - Computational Tools for Modeling Protein Networks JO - Current Proteomics Y1 - 2006 SP - 181 EP - 197 VL - 3 IS - 3 UR - http://www.ingentaconnect.com/content/ben/cp/2006/00000003/00000003/art00003 ER - TY - JOUR A1 - Fenselau C T1 - A review of quantitative methods for proteomic studies JO - Y1 - SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.jchromb.2006.10.071 ER - TY - JOUR A1 - Bar C A1 - Patil R A1 - Doshi J A1 - Kulkarni MJ A1 - Gade WN T1 - Characterization of the proteins of bacterial strain isolated from contaminated site involved in heavy metal resistance-A proteomic approach JO - J Biotechnol Y1 - 2007 SP - 444 EP - 51 VL - 128 IS - 3 UR - http://dx.doi.org/10.1016/j.jbiotec.2006.11.010 ER - TY - JOUR A1 - Mertens BJ A1 - Noo ME A1 - Tollenaar RA A1 - Deelder AM T1 - Mass spectrometry proteomic diagnosis: enacting the double cross-validatory paradigm JO - J Comput Biol Y1 - 2006 SP - 1591 EP - 605 VL - 13 IS - 9 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17147482&dopt=Abstract ER - TY - JOUR A1 - Choi C A1 - Munch R A1 - Leupold S A1 - Klein J A1 - Siegel I A1 - Thielen B A1 - Benkert B A1 - Kucklick M A1 - Schobert M A1 - Barthelmes J A1 - Ebeling C A1 - Haddad I A1 - Scheer M A1 - Grote A A1 - Hiller K A1 - Bunk B A1 - Schreiber K A1 - Retter I A1 - Schomburg D A1 - Jahn D T1 - SYSTOMONAS--an integrated database for systems biology analysis of Pseudomonas JO - Nucl Acids Res Y1 - 2007 SP - D533 EP - 7 VL - 35 IS - Database issue UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17202169&dopt=Abstract ER - TY - JOUR A1 - Roelofsen H A1 - Alvarez-Llamas G A1 - Schepers M A1 - Landman K A1 - Vonk RJ T1 - Proteomics profiling of urine with surface enhanced laser desorption/ionization time of flight mass spectrometry JO - Y1 - SP - EP - VL - IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17224053&dopt=Abstract ER - TY - JOUR A1 - Krisztian Papp A1 - Zsuzsanna Szekeres A1 - Nora Terenyi A1 - Andrea Isaak A1 - Anna Erdei A1 - Jozsef Prechl T1 - On-chip Complement Activation Adds an Extra Dimension to Antigen Microarrays JO - Mol Cell Proteomics Y1 - 2007 SP - 133 EP - 140 VL - 6 IS - 1 UR - http://www.mcponline.org/cgi/content/abstract/6/1/133?etoc ER - TY - JOUR A1 - Yanes O A1 - Aviles FX A1 - Wenzel R A1 - Nazabal A A1 - Zenobi R A1 - Calvete JJ T1 - Proteomic Profiling of a Snake Venom Using High Mass Detection MALDI-TOF Mass Spectrometry JO - J Am Soc Mass Spectrom Y1 - 2007 SP - 600 EP - 6 VL - 18 IS - 4 UR - http://dx.doi.org/10.1016/j.jasms.2006.11.007 ER - TY - JOUR A1 - Mine K A1 - Katayama A A1 - Matsumura T A1 - Nishino T A1 - Kuwabara Y A1 - Ishikawa G A1 - Murata T A1 - Sawa R A1 - Otsubo Y A1 - Shin S A1 - Takeshita T T1 - Proteome Analysis of Human Placentae: Pre-eclampsia Versus Normal Pregnancy JO - Y1 - SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.placenta.2006.10.005 ER - TY - JOUR A1 - Barderas MG A1 - Darde VM A1 - Duran MC A1 - Egido J A1 - Vivanco F T1 - Characterization of circulating human monocytes by proteomic analysis JO - Methods Mol Biol Y1 - 2006 SP - 319 EP - 28 VL - 357 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17172698&dopt=Abstract ER - TY - JOUR A1 - Nissom PM A1 - Sanny A A1 - Kok YJ A1 - Hiang YT A1 - Chuah SH A1 - Shing TK A1 - Lee YY A1 - Wong KT A1 - Hu WS A1 - Sim MY A1 - Philp R T1 - Transcriptome and proteome profiling to understanding the biology of high productivity CHO cells JO - Mol Biotechnol Y1 - 2006 SP - 125 EP - 40 VL - 34 IS - 2 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17172658&dopt=Abstract ER - TY - JOUR A1 - Shimode K A1 - Iwasaki N A1 - Majima T A1 - Funakoshi T A1 - Sawaguchi N A1 - Onodera T A1 - Minami A T1 - Bone Marrow Stromal Cells Act as Feeder Cells for Tendon Fibroblasts through Soluble Factors JO - Y1 - SP - EP - VL - IS - UR - http://dx.doi.org/10.1089/ten.2006.0079 ER - TY - JOUR A1 - Gazanchian A A1 - Hajheidari M A1 - Sima NK A1 - Salekdeh GH T1 - Proteome response of Elymus elongatum to severe water stress and recovery JO - J Exp Bot Y1 - 2007 SP - 291 EP - 300 VL - 58 IS - 2 UR - http://dx.doi.org/10.1093/jxb/erl226 ER - TY - JOUR A1 - Bingyun Sun A1 - Jeffrey A. Ranish A1 - Angelita G. Utleg A1 - James T. White A1 - Xiaowei Yan A1 - Biaoyang Lin A1 - Leroy Hood T1 - Shotgun Glycopeptide Capture Approach Coupled with Mass Spectrometry for Comprehensive Glycoproteomics JO - Mol Cell Proteomics Y1 - 2007 SP - 141 EP - 149 VL - 6 IS - 1 UR - http://www.mcponline.org/cgi/content/abstract/6/1/141?etoc ER - TY - JOUR A1 - Jie Dai A1 - Wen-Hai Jin A1 - Quan-Hu Sheng A1 - Chia-Hui Shieh A1 - Jia-Rui Wu A1 - Rong Zeng T1 - Protein Phosphorylation and Expression Profiling by Yin-Yang Multidimensional Liquid Chromatography (Yin-Yang MDLC) Mass Spectrometry JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2007 SP - 250 EP - 262 VL - 6 IS - 1 UR - http://dx.doi.org/10.1021/pr0604155 ER - TY - JOUR A1 - Vener AV T1 - Environmentally modulated phosphorylation and dynamics of proteins in photosynthetic membranes JO - Y1 - SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.bbabio.2006.11.007 ER - TY - JOUR A1 - Salim K A1 - Guest PC A1 - Skynner HA A1 - Bilsland JG A1 - Bonnert TP A1 - McAllister G A1 - Munoz-Sanjuan I T1 - Identification of Proteomic Changes During Differentiation of Adult Mouse Subventricular Zone Progenitor Cells JO - Stem Cells Dev Y1 - 2007 SP - 143 EP - 65 VL - 16 IS - 1 UR - http://dx.doi.org/10.1089/scd.2007.16.ft-2 ER - TY - JOUR A1 - Devos S A1 - Laukens K A1 - Deckers P A1 - Van Der Straeten D A1 - Beeckman T A1 - Inze D A1 - Van Onckelen H A1 - Witters E A1 - Prinsen E T1 - A hormone and proteome approach to picturing the initial metabolic events during Plasmodiophora brassicae infection on Arabidopsis JO - Mol Plant Microbe Interact Y1 - 2006 SP - 1431 EP - 43 VL - 19 IS - 12 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17153927&dopt=Abstract ER - TY - JOUR A1 - Dodds ED A1 - Hagerman PJ A1 - Lebrilla CB T1 - Fragmentation of Singly Protonated Peptides via a Combination of Infrared and Collisional Activation JO - Anal Chem Y1 - 2006 SP - 8506 EP - 8511 VL - 78 IS - 24 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17165846&dopt=Abstract ER - TY - JOUR A1 - Fei Zhou A1 - Jacob Galan A1 - Robert L. Geahlen A1 - W. Andy Tao T1 - A Novel Quantitative Proteomics Strategy To Study Phosphorylation-Dependent Peptide-Protein Interactions JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2007 SP - 133 EP - 140 VL - 6 IS - 1 UR - http://dx.doi.org/10.1021/pr0602904 ER - TY - JOUR A1 - Saito A A1 - Nagasaki M A1 - Oyama M A1 - Kozuka-Hata H A1 - Semba K A1 - Sugano S A1 - Yamamoto T A1 - Miyano S T1 - AYUMS: an algorithm for completely automatic quantitation based on LC-MS/MS proteome data and its application to the analysis of signal transduction JO - Y1 - SP - EP - VL - IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17233908&dopt=Abstract ER - TY - JOUR A1 - Wojciech Wozny A1 - Klaus Schroer A1 - Gerhard P. Schwall A1 - Slobodan Poznanovi? A1 - Werner Stegmann A1 - Klaus Dietz A1 - Hermann Rogatsch A1 - Georg Schaefer A1 - Heidi Huebl A1 - Helmut Klocker A1 - André Schrattenholz A1 - Michael A. Cahill T1 - Differential radioactive quantification of protein abundance ratios between benign and malignant prostate tissues: Cancer association of annexin A3 JO - PROTEOMICS Y1 - 2007 SP - 313 EP - 322 VL - 7 IS - 2 UR - http://dx.doi.org/10.1002/pmic.200600646 ER - TY - JOUR A1 - Matsumura A1 - Nobutaka; Doi A1 - Nobuhide; Yanagawa A1 - Hiroshi T1 - Recent Progress and Future Prospects in Protein Display Technologies as Tools for Proteomics JO - Current Proteomics Y1 - 2006 SP - 199 EP - 215 VL - 3 IS - 3 UR - http://www.ingentaconnect.com/content/ben/cp/2006/00000003/00000003/art00004 ER - TY - JOUR A1 - Gottlieb RA T1 - Identification of targets of phosphorylation in heart mitochondria JO - Methods Mol Biol Y1 - 2006 SP - 127 EP - 38 VL - 357 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17172684&dopt=Abstract ER - TY - JOUR A1 - Truant R A1 - Atwal R A1 - Burtnik A T1 - Hypothesis: huntingtin may function in membrane association and vesicular trafficking JO - Biochem Cell Biol Y1 - 2006 SP - 912 EP - 917 VL - 84 IS - 6 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17215878&dopt=Abstract ER - TY - JOUR A1 - Forgber M A1 - Basu R A1 - Roychoudhury K A1 - Theinert S A1 - Roy S A1 - Sundar S A1 - Walden P T1 - Mapping the Antigenicity of the Parasites in Leishmania donovani Infection by Proteome Serology JO - Y1 - SP - EP - VL - IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17183669&dopt=Abstract ER - TY - JOUR A1 - Tripet B A1 - Cepeniene D A1 - Kovacs JM A1 - Mant CT A1 - Krokhin OV A1 - Hodges RS T1 - Requirements for prediction of peptide retention time in reversed-phase high-performance liquid chromatography: Hydrophilicity/hydrophobicity of side-chains at the N- and C-termini of peptides are dramatically affected by the end-groups and location JO - J Chromatogr A Y1 - 2007 SP - 212 EP - 25 VL - 1141 IS - 2 UR - http://dx.doi.org/10.1016/j.chroma.2006.12.024 ER - TY - JOUR A1 - Olsen JV A1 - Nielsen PA A1 - Andersen JR A1 - Mann M A1 - Wisniewski JR T1 - Quantitative proteomic profiling of membrane proteins from the mouse brain cortex, hippocampus, and cerebellum using the HysTag reagent: Mapping of neurotransmitter receptors and ion channels JO - Brain Res Y1 - 2007 SP - 95 EP - 106 VL - 1134 IS - 1 UR - http://dx.doi.org/10.1016/j.brainres.2006.11.082 ER - TY - JOUR A1 - Liu XP A1 - Shen J A1 - Li ZF A1 - Yan L A1 - Gu J T1 - A serum proteomic pattern for the detection of colorectal adenocarcinoma using surface enhanced laser desorption and ionization mass spectrometry JO - Cancer Invest Y1 - 2006 SP - 747 EP - 53 VL - 24 IS - 8 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17162557&dopt=Abstract ER - TY - JOUR A1 - Cieslak A A1 - Vogler AP A1 - Lafranchi-Tristem N A1 - Dunn MJ A1 - Westbrook JA T1 - Investigation of hormone activity in butterfly imaginal wing discs by protein expression pattern changes JO - Electrophoresis Y1 - 2007 SP - 535 EP - 44 VL - 28 IS - 4 UR - http://dx.doi.org/10.1002/elps.200600620 ER - TY - JOUR A1 - Warthaka M A1 - Karwowska-Desaulniers P A1 - Pflum MK T1 - Phosphopeptide modification and enrichment by oxidation-reduction condensation JO - ACS Chem Biol Y1 - 2006 SP - 697 EP - 701 VL - 1 IS - 11 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17184134&dopt=Abstract ER - TY - JOUR A1 - Reynolds K. B. Brobey A1 - Lynn Soong T1 - Establishing a liquid-phase IEF in combination with 2-DE for the analysis of Leishmania proteins JO - PROTEOMICS Y1 - 2007 SP - 116 EP - 120 VL - 7 IS - 1 UR - http://dx.doi.org/10.1002/pmic.200600587 ER - TY - JOUR A1 - Alfred C. O. Vertegaal A1 - Jens S. Andersen A1 - Stephen C. Ogg A1 - Ronald T. Hay A1 - Matthias Mann A1 - Angus I. Lamond T1 - Distinct and Overlapping Sets of SUMO-1 and SUMO-2 Target Proteins Revealed by Quantitative Proteomics JO - Mol Cell Proteomics Y1 - 2006 SP - 2298 EP - 2310 VL - 5 IS - 12 UR - http://www.mcponline.org/cgi/content/abstract/5/12/2298?etoc ER - TY - JOUR A1 - Foy M A1 - Harney DF A1 - Wynne K A1 - Maguire PB T1 - Enrichment of phosphotyrosine proteome of human platelets by immunoprecipitation JO - Methods Mol Biol Y1 - 2006 SP - 313 EP - 8 VL - 357 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17172697&dopt=Abstract ER - TY - JOUR A1 - Jiang G A1 - Wang Z A1 - Shang H A1 - Yang W A1 - Hu Z A1 - Phillips J A1 - Deng X T1 - Proteome analysis of leaves from the resurrection plant Boea hygrometrica in response to dehydration and rehydration JO - Y1 - SP - EP - VL - IS - UR - http://dx.doi.org/10.1007/s00425-006-0449-z ER - TY - JOUR A1 - Wester HJ A1 - Schottelius M T1 - Fluorine-18 labeling of peptides and proteins JO - Y1 - SP - EP - VL - IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17172153&dopt=Abstract ER - TY - JOUR A1 - Quanzhou Luo A1 - Jason S. 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Novotny T1 - Improved Collision-Induced Dissociation Analysis of Peptides by Matrix-Assisted Laser Desorption/Ionization Tandem Time-of-Flight Mass Spectrometry through 3-Sulfobenzoic Acid Succinimidyl Ester Labeling JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2007 SP - 124 EP - 132 VL - 6 IS - 1 UR - http://dx.doi.org/10.1021/pr0602747 ER - TY - JOUR A1 - Sung-Soon Kim A1 - Mi-Hye Kim A1 - Bo-Kyung Shin A1 - Han-Ju Na A1 - Jin-Young Choi A1 - Mee-Kyung Kee A1 - Seon-Ah Chong A1 - Myeong-Jin Nam T1 - Different Isoforms of Apolipoprotein AI Present Heterologous Post-Translational Expression in HIV Infected Patients JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2007 SP - 180 EP - 184 VL - 6 IS - 1 UR - http://dx.doi.org/10.1021/pr060323f ER - TY - JOUR A1 - Julian Whitelegge A1 - Frederic Halgand A1 - Puneet Souda A1 - Vlad Zabrouskov T1 - Top-down mass spectrometry of integral membrane proteins JO - Expert Review of Proteomics Y1 - 2006 SP - 585 EP - 596 VL - 3 IS - 6 UR - http://dx.doi.org/10.1586/14789450.3.6.585 ER - TY - JOUR A1 - Seliger B A1 - Fedorushchenko A A1 - Brenner W A1 - Ackermann A A1 - Atkins D A1 - Hanash S A1 - Lichtenfels R T1 - Ubiquitin COOH-Terminal Hydrolase 1: A Biomarker of Renal Cell Carcinoma Associated with Enhanced Tumor Cell Proliferation and Migration[?Q1: Running head: UCHL1, a Biomarker of RCC. 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Plasma-based proteomics in early detection and therapy JO - Y1 - SP - EP - VL - IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17184556&dopt=Abstract ER - TY - JOUR A1 - Pedreschi R A1 - Vanstreels E A1 - Carpentier S A1 - Robben J A1 - Noben JP A1 - Nicolai B T1 - A proteomic approach to study flesh browning in stored 'conference' pears JO - Commun Agric Appl Biol Sci Y1 - 2006 SP - 275 EP - 80 VL - 71 IS - 1 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17191521&dopt=Abstract ER - TY - JOUR A1 - Verhelst SH A1 - Fonovic M A1 - Bogyo M T1 - A Mild Chemically Cleavable Linker System for Functional Proteomic Applications JO - Angew Chem Int Ed Engl Y1 - 2007 SP - 1284 EP - 6 VL - 46 IS - 8 UR - http://dx.doi.org/10.1002/anie.200603811 ER - TY - JOUR A1 - Copier J A1 - Whelan M A1 - Dalgleish A T1 - Biomarkers for the Development of Cancer Vaccines : Current Status JO - Mol Diagn Ther Y1 - 2006 SP - 337 EP - 343 VL - 10 IS - 6 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17154650&dopt=Abstract ER - TY - JOUR A1 - Bonchev D T1 - Complexity analysis of yeast proteome network JO - Chem Biodivers Y1 - 2004 SP - 312 EP - 26 VL - 1 IS - 2 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17191850&dopt=Abstract ER - TY - JOUR A1 - Basilico F A1 - Di Silvestre D A1 - Sedini S A1 - Petretto A A1 - Levreri I A1 - Melioli G A1 - Farina C A1 - Mori F A1 - Mauri PL T1 - New approach for rapid detection of known hemoglobin variants using LC-MS/MS combined with a peptide database JO - J Mass Spectrom Y1 - 2006 SP - 288 EP - 292 VL - 42 IS - 3 UR - http://dx.doi.org/10.1002/jms.1160 ER - TY - JOUR A1 - Meilhac O A1 - Delbosc S A1 - Michel JB T1 - Cardiovascular Biomarker Discovery by SELDI-TOF Mass Spectrometry JO - Methods Mol Biol Y1 - 2006 SP - 331 EP - 42 VL - 357 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17172699&dopt=Abstract ER - TY - JOUR A1 - Singh LP A1 - Jiang Y A1 - Cheng DW T1 - Proteomic Identification of 14-3-3zeta as an Adapter for IGF-1 and Akt/GSK-3beta Signaling and Survival of Renal Mesangial Cells JO - Int J Biol Sci Y1 - 2006 SP - 27 EP - 39 VL - 3 IS - 1 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17200689&dopt=Abstract ER - TY - JOUR A1 - Deng B A1 - Ye N A1 - Luo G A1 - Chen X A1 - Wang Y T1 - Proteomics analysis of stage-specific proteins expressed in human squamous cell lung carcinoma tissues JO - Cancer Biomark Y1 - 2005 SP - 279 EP - 86 VL - 1 IS - 6 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17192052&dopt=Abstract ER - TY - JOUR T1 - TOOLbox: RAAMS for interpreting 16O/18O experiments | Meta-All | PP-VLAM for rapid FTMS analyses | A new version of SSRCalc JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2007 SP - 18 EP - 19 VL - 6 IS - 1 UR - http://pubs.acs.org/subscribe/journals/jprobs/6/i01/html/0107toolbox.html ER - TY - JOUR A1 - Robert L. J. Graham A1 - Catherine E. Pollock A1 - S. Naomi O'Loughlin A1 - Nigel G. Ternan A1 - D. Brent Weatherly A1 - Rick L. Tarleton A1 - Geoff McMullan T1 - Multidimensional analysis of the insoluble sub-proteome of Oceanobacillus iheyensis HTE831, an alkaliphilic and halotolerant deep-sea bacterium isolated from the Iheya ridge JO - PROTEOMICS Y1 - 2007 SP - 82 EP - 91 VL - 7 IS - 1 UR - http://dx.doi.org/10.1002/pmic.200600665 ER - TY - JOUR A1 - Crystal Kirmiz A1 - Bensheng Li A1 - Hyun Joo An A1 - Brian H. Clowers A1 - Helen K. Chew A1 - Kit S. Lam A1 - Anthony Ferrige A1 - Robert Alecio A1 - Alexander D. Borowsky A1 - Shola Sulaimon A1 - Carlito B. Lebrilla A1 - Suzanne Miyamoto T1 - A Serum Glycomics Approach to Breast Cancer Biomarkers JO - Mol Cell Proteomics Y1 - 2007 SP - 43 EP - 55 VL - 6 IS - 1 UR - http://www.mcponline.org/cgi/content/abstract/6/1/43?etoc ER - TY - JOUR A1 - Norden B A1 - Broberg P A1 - Lindberg C A1 - Plymoth A T1 - Analysis and Understanding of High-Dimensionality Data by Means of Multivariate Data Analysis JO - Chem Biodivers Y1 - 2005 SP - 1487 EP - 1494 VL - 2 IS - 11 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17191948&dopt=Abstract ER - TY - JOUR A1 - Chen A A1 - Liao WP A1 - Lu Q A1 - Wong WS A1 - Wong PT T1 - Upregulation of dihydropyrimidinase-related protein 2, spectrin alpha II chain, heat shock cognate protein 70 pseudogene 1 and tropomodulin 2 after focal cerebral ischemia in rats-A proteomics approach JO - Y1 - SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.neuint.2006.11.008 ER - TY - JOUR A1 - Schmidt A A1 - Aebersold R T1 - High-accuracy proteome maps of human body fluids JO - Y1 - SP - EP - VL - IS - UR - http://dx.doi.org/10.1186/gb-2006-7-11-242 ER - TY - JOUR A1 - Ming Zhou A1 - Timothy D Veenstra T1 - Multiplexed immunofluorescence microscopy for the interrogation of cellular protein complexes JO - Expert Review of Proteomics Y1 - 2006 SP - 581 EP - 583 VL - 3 IS - 6 UR - http://dx.doi.org/10.1586/14789450.3.6.581 ER - TY - JOUR A1 - Buhimschi CS A1 - Bhandari V A1 - Hamar BD A1 - Bahtiyar MO A1 - Zhao G A1 - Sfakianaki AK A1 - Pettker CM A1 - Magloire L A1 - Funai E A1 - Norwitz ER A1 - Paidas M A1 - Copel JA A1 - Weiner CP A1 - Lockwood CJ A1 - Buhimschi IA T1 - Proteomic Profiling of the Amniotic Fluid to Detect Inflammation, Infection, and Neonatal Sepsis JO - Y1 - SP - EP - VL - IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17227133&dopt=Abstract ER - TY - JOUR A1 - Yuki Sugiura A1 - Shuichi Shimma A1 - Mitsutoshi Setou T1 - Two-Step Matrix Application Technique To Improve Ionization Efficiency for Matrix-Assisted Laser Desorption/Ionization in Imaging Mass Spectrometry JO - ANALYTICAL CHEMISTRY Y1 - 2006 SP - 8227 EP - 8235 VL - 78 IS - 24 UR - http://dx.doi.org/10.1021/ac060974v ER - TY - JOUR A1 - Radivojac P A1 - Iakoucheva LM A1 - Oldfield CJ A1 - Obradovic Z A1 - Uversky VN A1 - Dunker AK T1 - Intrinsic Disorder and Functional Proteomics JO - Biophys J Y1 - 2007 SP - 1439 EP - 56 VL - 92 IS - 5 UR - http://dx.doi.org/10.1529/biophysj.106.094045 ER - TY - JOUR A1 - Taussig MJ A1 - Stoevesandt O A1 - Borrebaeck CA A1 - Bradbury AR A1 - Cahill D A1 - Cambillau C A1 - de Daruvar A A1 - Dubel S A1 - Eichler J A1 - Frank R A1 - Gibson TJ A1 - Gloriam D A1 - Gold L A1 - Herberg FW A1 - Hermjakob H A1 - Hoheisel JD A1 - Joos TO A1 - Kallioniemi O A1 - Koegll M A1 - Konthur Z A1 - Korn B A1 - Kremmer E A1 - Kr T1 - ProteomeBinders: planning a European resource of affinity reagents for analysis of the human proteome JO - Nat Methods Y1 - 2007 SP - 13 EP - 7 VL - 4 IS - 1 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17195019&dopt=Abstract ER - TY - JOUR A1 - Sioud M T1 - Main approaches to target discovery and validation JO - Methods Mol Biol Y1 - 2006 SP - 1 EP - 12 VL - 360 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17172722&dopt=Abstract ER - TY - JOUR A1 - Sebastien C. Carpentier A1 - Erwin Witters A1 - Kris Laukens A1 - Harry Van Onckelen A1 - Rony Swennen A1 - Bart Panis T1 - Banana (Musa spp.) as a model to study the meristem proteome: Acclimation to osmotic stress JO - PROTEOMICS Y1 - 2007 SP - 92 EP - 105 VL - 7 IS - 1 UR - http://dx.doi.org/10.1002/pmic.200600533 ER - TY - JOUR A1 - Spaller MR T1 - Act globally, think locally: systems biology addresses the PDZ domain JO - ACS Chem Biol Y1 - 2006 SP - 207 EP - 10 VL - 1 IS - 4 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17163673&dopt=Abstract ER - TY - JOUR A1 - Antal J A1 - Banyasz B A1 - Buzas Z T1 - Shotgun electroelution: A proteomic tool for simultaneous sample elution from whole SDS-polyacrylamide gel slabs JO - Electrophoresis Y1 - 2007 SP - 508 EP - 11 VL - 28 IS - 4 UR - http://dx.doi.org/10.1002/elps.200600634 ER - TY - JOUR A1 - O'connell CD A1 - Atha And DH A1 - Jakupciak JP T1 - Standards for validation of cancer biomarkers JO - Cancer Biomark Y1 - 2005 SP - 233 EP - 9 VL - 1 IS - 4-5 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17192047&dopt=Abstract ER - TY - JOUR A1 - Stuart LM A1 - Boulais J A1 - Charriere GM A1 - Hennessy EJ A1 - Brunet S A1 - Jutras I A1 - Goyette G A1 - Rondeau C A1 - Letarte S A1 - Huang H A1 - Ye P A1 - Morales F A1 - Kocks C A1 - Bader JS A1 - Desjardins M A1 - Ezekowitz RA T1 - A systems biology analysis of the Drosophila phagosome JO - Nature Y1 - 2007 SP - 95 EP - 101 VL - 445 IS - 7123 UR - http://dx.doi.org/10.1038/nature05380 ER - TY - JOUR A1 - Betton GR A1 - Kenne K A1 - Somers R A1 - Marr A T1 - Protein biomarkers of nephrotoxicity; a review and findings with cyclosporin A, a signal transduction kinase inhibitor and N-phenylanthranilic acid JO - Cancer Biomark Y1 - 2005 SP - 59 EP - 67 VL - 1 IS - 1 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17192032&dopt=Abstract ER - TY - JOUR A1 - Worthington AS A1 - Rivera H A1 - Torpey JW A1 - Alexander MD A1 - Burkart MD T1 - Mechanism-based protein cross-linking probes to investigate carrier protein-mediated biosynthesis JO - ACS Chem Biol Y1 - 2006 SP - 687 EP - 91 VL - 1 IS - 11 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17184132&dopt=Abstract ER - TY - JOUR A1 - Verkhivker GM T1 - Computational proteomics of biomolecular interactions in the sequence and structure space of the tyrosine kinome: Deciphering the molecular basis of the kinase inhibitors selectivity JO - Proteins Y1 - 2007 SP - 912 EP - 29 VL - 66 IS - 4 UR - http://dx.doi.org/10.1002/prot.21287 ER - TY - JOUR A1 - van der Merwe DE A1 - Oikonomopoulou K A1 - Marshall J A1 - Diamandis EP T1 - Mass spectrometry: uncovering the cancer proteome for diagnostics JO - Adv Cancer Res Y1 - 2006 SP - 23 EP - 50 VL - 96 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17161675&dopt=Abstract ER - TY - JOUR A1 - Chi-De Chen A1 - Chia-Siu Wang A1 - Ya-Hui Huang A1 - Kun-Yi Chien A1 - Ying Liang A1 - Wei-Jan Chen A1 - Kwang-Huei Lin T1 - Overexpression of CLIC1 in human gastric carcinoma and its clinicopathological significance JO - PROTEOMICS Y1 - 2007 SP - 155 EP - 167 VL - 7 IS - 1 UR - http://dx.doi.org/10.1002/pmic.200600663 ER - TY - JOUR A1 - Wooldridge AA A1 - Haystead TA T1 - Real-time in vivo proteomic identification of novel kinase substrates in smooth muscle JO - Methods Mol Biol Y1 - 2006 SP - 235 EP - 52 VL - 357 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17172692&dopt=Abstract ER - TY - JOUR A1 - La YJ A1 - Wan CL A1 - Zhu H A1 - Yang YF A1 - Chen YS A1 - Pan YX A1 - Feng GY A1 - He L T1 - Decreased levels of apolipoprotein A-I in plasma of schizophrenic patients JO - Y1 - SP - EP - VL - IS - UR - http://dx.doi.org/10.1007/s00702-006-0607-2 ER - TY - JOUR A1 - Smales M A1 - Lundstrom K T1 - Proceedings from the 7th PEACe Conference on Protein Expression in Animal Cells, September 18-22, 2005, Crete, Greece JO - Mol Biotechnol Y1 - 2006 SP - 99 EP - 100 VL - 34 IS - 2 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17172654&dopt=Abstract ER - TY - JOUR A1 - Sudhakaran Prabakaran A1 - Martina Wengenroth A1 - Helen E. 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Markus Leweke A1 - Sabine Bahn T1 - 2-D DIGE Analysis of Liver and Red Blood Cells Provides Further Evidence for Oxidative Stress in Schizophrenia JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2007 SP - 141 EP - 149 VL - 6 IS - 1 UR - http://dx.doi.org/10.1021/pr060308a ER - TY - JOUR A1 - Gruhler A A1 - Matthiesen R T1 - Quantitation with virtual expert mass spectrometrist JO - Methods Mol Biol Y1 - 2006 SP - 139 EP - 52 VL - 367 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17185774&dopt=Abstract ER - TY - JOUR A1 - Vivanco A1 - Fernando; Darde A1 - Veronica M.; De la Cuesta A1 - Fernando; Barderas A1 - Maria G T1 - Cardiovascular Proteomics JO - Current Proteomics Y1 - 2006 SP - 147 EP - 170 VL - 3 IS - 3 UR - http://www.ingentaconnect.com/content/ben/cp/2006/00000003/00000003/art00001 ER - TY - JOUR A1 - Chich JF A1 - Schaeffer B A1 - Bouin AP A1 - Mouthon F A1 - Labas V A1 - Larramendy C A1 - Deslys JP A1 - Grosclaude J T1 - Prion infection-impaired functional blocks identified by proteomics enlighten the targets and the curing pathways of an anti-prion drug JO - Biochim Biophys Acta Y1 - 2007 SP - 154 EP - 67 VL - 1774 IS - 1 UR - http://dx.doi.org/10.1016/j.bbapap.2006.10.016 ER - TY - JOUR A1 - Lavanya Babujee A1 - Balakrishnan Venkatesh A1 - Akihiro Yamazaki A1 - Shinji Tsuyumu T1 - Proteomic Analysis of the Carbonate Insoluble Outer Membrane Fraction of the Soft-Rot Pathogen Dickeya dadantii (syn. 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Eriksson T1 - Optimization of phosphopeptide elution conditions in immobilized Fe(III) affinity chromatography JO - PROTEOMICS Y1 - 2007 SP - 174 EP - 176 VL - 7 IS - 2 UR - http://dx.doi.org/10.1002/pmic.200600571 ER - TY - JOUR A1 - Jenkins S A1 - Rowell C A1 - Wang J A1 - Lamartiniere CA T1 - Prenatal TCDD exposure predisposes for mammary cancer in rats JO - Y1 - SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.reprotox.2006.10.004 ER - TY - JOUR A1 - Cecconi D A1 - Mion S A1 - Astner H A1 - Domenici E A1 - Righetti PG A1 - Carboni L T1 - Proteomic analysis of rat cortical neurons after fluoxetine treatment JO - Brain Res Y1 - 2007 SP - 41 EP - 51 VL - 1135 IS - 1 UR - http://dx.doi.org/10.1016/j.brainres.2006.12.008 ER - TY - JOUR A1 - Anita Herndl A1 - Gorji Marzban A1 - Daniel Kolarich A1 - Rainer Hahn A1 - Donato Boscia A1 - Wolfgang Hemmer A1 - Fatemeh Maghuly A1 - Elitza Stoyanova A1 - Hermann Katinger A1 - Margit Laimer T1 - Mapping of Malus domestica allergens by 2-D electrophoresis and IgE-reactivity JO - ELECTROPHORESIS Y1 - 2007 SP - 437 EP - 448 VL - 28 IS - 3 UR - http://dx.doi.org/10.1002/elps.200600342 ER - TY - JOUR A1 - Apatoff A A1 - Kim E A1 - Kliger Y T1 - Towards alignment independent quantitative assessment of homology detection JO - Y1 - SP - EP - VL - IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17205117&dopt=Abstract ER - TY - JOUR A1 - Yang H A1 - Zeng J T1 - Detection of molecular weight of PMCA isoform with 20 cm SDS PAGE electrophoresis: compared with 8 cm SDS PAGE JO - Yan Ke Xue Bao Y1 - 2005 SP - 179 EP - 84 VL - 21 IS - 3 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17162858&dopt=Abstract ER - TY - JOUR A1 - Zuzana Demianová A1 - Masahiko Shimmo A1 - Eemeli Pöysä A1 - Sami Franssila A1 - Marc Baumann T1 - Toward an integrated microchip sized 2-D polyacrylamide slab gel electrophoresis device for proteomic analysis JO - ELECTROPHORESIS Y1 - 2007 SP - 422 EP - 428 VL - 28 IS - 3 UR - http://dx.doi.org/10.1002/elps.200600334 ER - TY - JOUR A1 - Dobrin Nedelkov T1 - Mass spectrometry-based immunoassays for the next phase of clinical applications JO - Expert Review of Proteomics Y1 - 2006 SP - 631 EP - 640 VL - 3 IS - 6 UR - http://dx.doi.org/10.1586/14789450.3.6.631 ER - TY - JOUR A1 - Kondo A A1 - Li W A1 - Nakagawa T A1 - Nakano M A1 - Koyama N A1 - Wang X A1 - Gu J A1 - Miyoshi E A1 - Taniguchi N T1 - From glycomics to functional glycomics of sugar chains: Identification of target proteins with functional changes using gene targeting mice and knock down cells of FUT8 as examples JO - Biochim Biophys Acta Y1 - 2006 SP - 1881 EP - 9 VL - 1764 IS - 12 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17174880&dopt=Abstract ER - TY - JOUR A1 - Finehout EJ A1 - Franck Z A1 - Choe LH A1 - Relkin N A1 - Lee KH T1 - Cerebrospinal fluid proteomic biomarkers for Alzheimer's disease JO - Ann Neurol Y1 - 2007 SP - 120 EP - 9 VL - 61 IS - 2 UR - http://dx.doi.org/10.1002/ana.21038 ER - TY - JOUR A1 - Stanley BA A1 - Van Eyk JE T1 - A solubility optimization protocol for two-dimensional gel electrophoresis of cardiac tissue JO - Methods Mol Biol Y1 - 2006 SP - 59 EP - 66 VL - 357 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17172678&dopt=Abstract ER - TY - JOUR A1 - Romero R A1 - Espinoza J A1 - Gotsch F A1 - Kusanovic J A1 - Friel L A1 - Erez O A1 - Mazaki-Tovi S A1 - Than N A1 - Hassan S A1 - Tromp G T1 - The use of high-dimensional biology (genomics, transcriptomics, proteomics, and metabolomics) to understand the preterm parturition syndrome JO - BJOG Y1 - 2006 SP - 118 EP - 135 VL - 113 IS - s3 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17206980&dopt=Abstract ER - TY - JOUR A1 - Craig D. 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Lubman A1 - Steve Goodison T1 - Proteomic profiling identifies breast tumor metastasis-associated factors in an isogenic model JO - PROTEOMICS Y1 - 2007 SP - 299 EP - 312 VL - 7 IS - 2 UR - http://dx.doi.org/10.1002/pmic.200600272 ER - TY - JOUR A1 - Lv LL A1 - Liu BC A1 - Zhang CX A1 - Tang ZM A1 - Zhang L A1 - Lu ZH T1 - Construction of an antibody microarray based on agarose-coated slides JO - Electrophoresis Y1 - 2007 SP - 406 EP - 13 VL - 28 IS - 3 UR - http://dx.doi.org/10.1002/elps.200600310 ER - TY - JOUR A1 - Park SH A1 - Kim JW A1 - Yun SH A1 - Leem SH A1 - Kahng HY A1 - Kim SI T1 - Characterization of beta-Ketoadipate Pathway from Multi-Drug Resistance Bacterium, Acinetobacter baumannii DU202 by Proteomic Approach JO - J Microbiol Y1 - 2006 SP - 632 EP - 40 VL - 44 IS - 6 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17205041&dopt=Abstract ER - TY - JOUR A1 - Ragas A A1 - Roussel L A1 - Puzo G A1 - Riviere M T1 - The M. tuberculosis cell surface glycoprotein Apa as a potential adhesin to colonize the target cells via the innate immune system pulmonary C-type lectin SP-A JO - J Biol Chem Y1 - 2007 SP - 5133 EP - 42 VL - 282 IS - 8 UR - http://dx.doi.org/10.1074/jbc.M610183200 ER - TY - JOUR A1 - Baptiste Vergnes A1 - Benjamin Gourbal A1 - Isabelle Girard A1 - Shyam Sundar A1 - Jolyne Drummelsmith A1 - Marc Ouellette T1 - A Proteomics Screen Implicates HSP83 and a Small Kinetoplastid Calpain-related Protein in Drug Resistance in Leishmania donovani Clinical Field Isolates by Modulating Drug-induced Programmed Cell Death JO - Mol Cell Proteomics Y1 - 2007 SP - 88 EP - 101 VL - 6 IS - 1 UR - http://www.mcponline.org/cgi/content/abstract/6/1/88?etoc ER - TY - JOUR A1 - Jianjun Shen A1 - Amy Pavone A1 - Carol Mikulec A1 - Sean C. 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Fischer T1 - Protein Expression Profiles in the Epidermis of Cyclooxygenase-2 Transgenic Mice by 2-Dimensional Gel Electrophoresis and Mass Spectrometry JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2007 SP - 273 EP - 286 VL - 6 IS - 1 UR - http://dx.doi.org/10.1021/pr060418h ER - TY - JOUR A1 - Paolo Conrotto A1 - Ihor Yakymovych A1 - Mariya Yakymovych A1 - Serhiy Souchelnytskyi T1 - Interactome of Transforming Growth Factor- Type I Receptor (TRI): Inhibition of TGF Signaling by Epac1 JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2007 SP - 287 EP - 297 VL - 6 IS - 1 UR - http://dx.doi.org/10.1021/pr060427q ER - TY - JOUR A1 - Teixeira PC A1 - Iwai LK A1 - Kuramoto AC A1 - Honorato R A1 - Fiorelli A A1 - Stolf N A1 - Kalil J A1 - Cunha-Neto E T1 - Proteomic inventory of myocardial proteins from patients with chronic Chagas' cardiomyopathy JO - Braz J Med Biol Res Y1 - 2006 SP - 1549 EP - 62 VL - 39 IS - 12 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17160263&dopt=Abstract ER - TY - JOUR A1 - Won-Jeong Lee A1 - Dong-Uk Kim A1 - Mi-Young Lee A1 - Kang-Yell Choi T1 - Identification of proteins interacting with the catalytic subunit of PP2A by proteomics JO - PROTEOMICS Y1 - 2007 SP - 206 EP - 214 VL - 7 IS - 2 UR - http://dx.doi.org/10.1002/pmic.200600480 ER - TY - JOUR A1 - David B. Friedman A1 - Shizhen E. Wang A1 - Corbin W. Whitwell A1 - Richard M. Caprioli A1 - Carlos L. Arteaga T1 - Multivariable Difference Gel Electrophoresis and Mass Spectrometry: A Case Study on Transforming Growth Factor-{beta} and ERBB2 Signaling JO - Mol Cell Proteomics Y1 - 2007 SP - 150 EP - 169 VL - 6 IS - 1 UR - http://www.mcponline.org/cgi/content/abstract/6/1/150?etoc ER - TY - JOUR A1 - Martinez-Ruiz A A1 - Lamas S T1 - Proteomic identification of s-nitrosylated proteins in endothelial cells JO - Methods Mol Biol Y1 - 2006 SP - 215 EP - 24 VL - 357 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17172690&dopt=Abstract ER - TY - JOUR A1 - Schreiweis MA A1 - Butler JP A1 - Kulkarni NH A1 - Knierman MD A1 - Higgs RE A1 - Halladay DL A1 - Onyia JE A1 - Hale JE T1 - A proteomic analysis of adult rat bone reveals the presence of cartilage/chondrocyte markers JO - Y1 - SP - EP - VL - IS - UR - http://dx.doi.org/10.1002/jcb.21196 ER - TY - JOUR A1 - Lee YH A1 - Kim BH A1 - Kim JH A1 - Yoon WS A1 - Ho Bang S A1 - Park YK T1 - CadC has a global translational effect during acid adaptation in Salmonella enterica serovar Typhimurium JO - J Bacteriol Y1 - 2007 SP - 2417 EP - 25 VL - 189 IS - 6 UR - http://dx.doi.org/10.1128/JB.01277-06 ER - TY - JOUR A1 - Sprenger RR A1 - Horrevoets AJ T1 - Proteomic study of caveolae and rafts isolated from human endothelial cells JO - Methods Mol Biol Y1 - 2006 SP - 199 EP - 214 VL - 357 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17172689&dopt=Abstract ER - TY - JOUR A1 - Neasta J A1 - Uttenweiler-Joseph S A1 - Chaoui K A1 - Monsarrat B A1 - Meunier JC A1 - Mouledous L T1 - Effect of long-term exposure of SH-SY5Y cells to morphine: a whole cell proteomic analysis JO - Y1 - SP - EP - VL - IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17184524&dopt=Abstract ER - TY - JOUR A1 - John G. Rowland A1 - Joanne L. Robson A1 - William J. Simon A1 - Hing Y. Leung A1 - Antoni R. Slabas T1 - Evaluation of an in vitro model of androgen ablation and identification of the androgen responsive proteome in LNCaP cells JO - PROTEOMICS Y1 - 2007 SP - 47 EP - 63 VL - 7 IS - 1 UR - http://dx.doi.org/10.1002/pmic.200600697 ER - TY - JOUR A1 - Duran MC A1 - Martin-Ventura JL A1 - Mas S A1 - Barderas MG A1 - Darde VM A1 - Jensen ON A1 - Egido J A1 - Vivanco F T1 - Characterization of the human atheroma plaque secretome by proteomic analysis JO - Methods Mol Biol Y1 - 2006 SP - 141 EP - 50 VL - 357 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17172685&dopt=Abstract ER - TY - JOUR A1 - Schoonheim PJ A1 - Veiga H A1 - da Costa Pereira D A1 - Friso G A1 - van Wijk KJ A1 - de Boer AH T1 - A Comprehensive Analysis of the 14-3-3 Interactome in Barley Leaves Using a Complementary Proteomics and Two-hybrid Approach JO - Plant Physiol Y1 - 2007 SP - 670 EP - 83 VL - 143 IS - 2 UR - http://dx.doi.org/10.1104/pp.106.090159 ER - TY - JOUR A1 - Liu J A1 - Bell A A1 - Bergeron J A1 - Yanofsky C A1 - Carrillo B A1 - Beaudrie C A1 - Kearney R T1 - Methods for peptide identification by spectral comparison JO - Y1 - SP - EP - VL - IS - UR - http://dx.doi.org/10.1186/1477-5956-5-3 ER - TY - JOUR A1 - Sadaghiani AM A1 - Verhelst SH A1 - Bogyo M T1 - Tagging and detection strategies for activity-based proteomics JO - Curr Opin Chem Biol Y1 - 2007 SP - 20 EP - 8 VL - 11 IS - 1 UR - http://dx.doi.org/10.1016/j.cbpa.2006.11.030 ER - TY - JOUR A1 - Chunling Wa A1 - Ron L. 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Hage T1 - Identification and Quantitative Studies of Protein Immobilization Sites by Stable Isotope Labeling and Mass Spectrometry JO - ANALYTICAL CHEMISTRY Y1 - 2006 SP - 7967 EP - 7977 VL - 78 IS - 23 UR - http://dx.doi.org/10.1021/ac0609935 ER - TY - JOUR A1 - Garwood K A1 - Garwood C A1 - Hedeler C A1 - Griffiths T A1 - Swainston N A1 - Oliver SG A1 - Paton NW T1 - Model-driven user interfaces for bioinformatics data resources: regenerating the wheel as an alternative to reinventing it JO - Y1 - SP - EP - VL - IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17169146&dopt=Abstract ER - TY - JOUR A1 - Pan S A1 - Aebersold R T1 - Quantitative proteomics by stable isotope labeling and mass spectrometry JO - Methods Mol Biol Y1 - 2006 SP - 209 EP - 18 VL - 367 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17185778&dopt=Abstract ER - TY - JOUR A1 - Kikuchi T A1 - Carbone DP T1 - Proteomics analysis in lung cancer: Challenges and opportunities JO - Respirology Y1 - 2007 SP - 22 EP - 8 VL - 12 IS - 1 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17207021&dopt=Abstract ER - TY - JOUR A1 - Liwen Zhang A1 - Xiaodan Su A1 - Shujun Liu A1 - Amy R. Knapp A1 - Mark R. Parthun A1 - Guido Marcucci A1 - Michael A. Freitas T1 - Histone H4 N-Terminal Acetylation in Kasumi-1 Cells Treated with Depsipeptide Determined by Acetic Acid-Urea Polyacrylamide Gel Electrophoresis, Amino Acid Coded Mass Tagging, and Mass Spectrometry JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2007 SP - 81 EP - 88 VL - 6 IS - 1 UR - http://dx.doi.org/10.1021/pr060139u ER - TY - JOUR A1 - Sanghamitra Mukhopadhyay A1 - David Good A1 - Richard D. Miller A1 - James E. Graham A1 - Sarah A. Mathews A1 - Peter Timms A1 - James T. Summersgill T1 - Identification of Chlamydia pneumoniae Proteins in the Transition from Reticulate to Elementary Body Formation JO - Mol Cell Proteomics Y1 - 2006 SP - 2311 EP - 2318 VL - 5 IS - 12 UR - http://www.mcponline.org/cgi/content/abstract/5/12/2311?etoc ER - TY - JOUR A1 - Viveka Mayya A1 - David K Han T1 - Proteomic applications of protein quantification by isotope-dilution mass spectrometry JO - Expert Review of Proteomics Y1 - 2006 SP - 597 EP - 610 VL - 3 IS - 6 UR - http://dx.doi.org/10.1586/14789450.3.6.597 ER - TY - JOUR A1 - Weimin Hou A1 - Martin Ethier A1 - Jeffrey C. Smith A1 - Yinglun Sheng A1 - Daniel Figeys T1 - Multiplexed Proteomic Reactor for the Processing of Proteomic Samples JO - ANALYTICAL CHEMISTRY Y1 - 2007 SP - 39 EP - 44 VL - 79 IS - 1 UR - http://dx.doi.org/10.1021/ac061248v ER - TY - JOUR A1 - Tam le T A1 - Eymann C A1 - Antelmann H A1 - Albrecht D A1 - Hecker M T1 - Global Gene Expression Profiling of Bacillus subtilis in Response to Ammonium and Tryptophan Starvation as Revealed by Transcriptome and Proteome Analysis JO - J Mol Microbiol Biotechnol Y1 - 2007 SP - 121 EP - 30 VL - 12 IS - 1-2 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17183219&dopt=Abstract ER - TY - JOUR A1 - Mallick P A1 - Schirle M A1 - Chen SS A1 - Flory MR A1 - Lee H A1 - Martin D A1 - Ranish J A1 - Raught B A1 - Schmitt R A1 - Werner T A1 - Kuster B A1 - Aebersold R T1 - Computational prediction of proteotypic peptides for quantitative proteomics JO - Nat Biotechnol Y1 - 2007 SP - 125 EP - 31 VL - 25 IS - 1 UR - http://dx.doi.org/10.1038/nbt1275 ER - TY - JOUR A1 - Tekaia F A1 - Yeramian E T1 - Evolution of proteomes: Fundamental signatures and global trends in amino acid compositions JO - Y1 - SP - EP - VL - IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17147802&dopt=Abstract ER - TY - JOUR A1 - Frederic Frottin A1 - Aude Martinez A1 - Philippe Peynot A1 - Sanghamitra Mitra A1 - Richard C. Holz A1 - Carmela Giglione A1 - Thierry Meinnel T1 - The Proteomics of N-terminal Methionine Cleavage JO - Mol Cell Proteomics Y1 - 2006 SP - 2336 EP - 2349 VL - 5 IS - 12 UR - http://www.mcponline.org/cgi/content/abstract/5/12/2336?etoc ER - TY - JOUR A1 - Matthiesen R T1 - Useful mass spectrometry programs freely available on the internet JO - Methods Mol Biol Y1 - 2006 SP - 303 EP - 6 VL - 367 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17185784&dopt=Abstract ER - TY - JOUR A1 - Arzu Umar A1 - Theo M. Luider A1 - John A. Foekens A1 - Ljiljana Pa?a-Toli? T1 - NanoLC-FT-ICR MS improves proteome coverage attainable for ?3000 laser-microdissected breast carcinoma cells JO - PROTEOMICS Y1 - 2007 SP - 323 EP - 329 VL - 7 IS - 2 UR - http://dx.doi.org/10.1002/pmic.200600293 ER - TY - JOUR A1 - Criel B A1 - Hausman F A1 - Oufir M A1 - Swennen R A1 - Panis B A1 - Renaut J T1 - Proteome and sugar analysis of abiotic stress underlying cryopreservation in potato JO - Commun Agric Appl Biol Sci Y1 - 2006 SP - 3 EP - 6 VL - 71 IS - 1 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17191462&dopt=Abstract ER - TY - JOUR A1 - Krause K A1 - Karger S A1 - Schierhorn A A1 - Poncin S A1 - Many MC A1 - Fuhrer D T1 - Proteomic profiling of cold thyroid nodules JO - Endocrinology Y1 - 2007 SP - 1754 EP - 63 VL - 148 IS - 4 UR - http://dx.doi.org/10.1210/en.2006-0752 ER - TY - JOUR A1 - Lee JW A1 - Figeys D A1 - Vasilescu J T1 - Biomarker assay translation from discovery to clinical studies in cancer drug development: quantification of emerging protein biomarkers JO - Adv Cancer Res Y1 - 2006 SP - 269 EP - 98 VL - 96 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17161683&dopt=Abstract ER - TY - JOUR A1 - Hidetsugu Kohzaki A1 - Yota Murakami T1 - Faster and easier chromatin immunoprecipitation assay with high sensitivity JO - PROTEOMICS Y1 - 2007 SP - 10 EP - 14 VL - 7 IS - 1 UR - http://dx.doi.org/10.1002/pmic.200600283 ER - TY - JOUR A1 - Jiang X A1 - Zhang W A1 - Gao F A1 - Huang Y A1 - Lv C A1 - Wang H T1 - Comparison of the Proteome of Isoniazid-Resistant and -Susceptible Strains of Mycobacterium tuberculosis JO - Microb Drug Resist Y1 - 2006 SP - 231 EP - 8 VL - 12 IS - 4 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17227207&dopt=Abstract ER - TY - JOUR A1 - Zhou H A1 - Liu Y A1 - Chui J A1 - Guo K A1 - Shun Q A1 - Lu W A1 - Jin H A1 - Wei L A1 - Yang P T1 - Investigation on glycosylation patterns of proteins from human liver cancer cell lines based on the multiplexed proteomics technology JO - Arch Biochem Biophys Y1 - 2007 SP - 70 EP - 8 VL - 459 IS - 1 UR - http://dx.doi.org/10.1016/j.abb.2006.10.027 ER - TY - JOUR A1 - M. 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Matton T1 - A comparative proteome and phosphoproteome analysis of differentially regulated proteins during fertilization in the self-incompatible species Solanum chacoense Bitt JO - PROTEOMICS Y1 - 2007 SP - 232 EP - 247 VL - 7 IS - 2 UR - http://dx.doi.org/10.1002/pmic.200600399 ER - TY - JOUR A1 - Julian L. Griffin A1 - James Scott A1 - Jeremy K. Nicholson T1 - The Influence of Pharmacogenetics on Fatty Liver Disease in the Wistar and Kyoto Rats: A Combined Transcriptomic and Metabonomic Study JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2007 SP - 54 EP - 61 VL - 6 IS - 1 UR - http://dx.doi.org/10.1021/pr0601640 ER - TY - JOUR A1 - Jose A. Moron A1 - Noura S. Abul-Husn A1 - Raphael Rozenfeld A1 - Georgia Dolios A1 - Rong Wang A1 - Lakshmi A. Devi T1 - Morphine Administration Alters the Profile of Hippocampal Postsynaptic Density-associated Proteins: A Proteomics Study Focusing on Endocytic Proteins JO - Mol Cell Proteomics Y1 - 2007 SP - 29 EP - 42 VL - 6 IS - 1 UR - http://www.mcponline.org/cgi/content/abstract/6/1/29?etoc ER - TY - JOUR A1 - Rovshan G. Sadygov A1 - Fernando Martin Maroto A1 - Andreas F. R. Hühmer T1 - ChromAlign: A Two-Step Algorithmic Procedure for Time Alignment of Three-Dimensional LC-MS Chromatographic Surfaces JO - ANALYTICAL CHEMISTRY Y1 - 2006 SP - 8207 EP - 8217 VL - 78 IS - 24 UR - http://dx.doi.org/10.1021/ac060923y ER - TY - JOUR A1 - Lin WY A1 - Ting YC A1 - Pan TM T1 - Proteomic Response to Intracellular Proteins of Monascus pilosus Grown under Phosphate-Limited Complex Medium with Different Growth Rates and Pigment Production JO - J Agric Food Chem Y1 - 2007 SP - 467 EP - 74 VL - 55 IS - 2 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17227081&dopt=Abstract ER - TY - JOUR A1 - Aleksey V. Tolmachev A1 - Matthew E. Monroe A1 - Navdeep Jaitly A1 - Vladislav A. Petyuk A1 - Joshua N. Adkins A1 - Richard D. Smith T1 - Mass Measurement Accuracy in Analyses of Highly Complex Mixtures Based Upon Multidimensional Recalibration JO - ANALYTICAL CHEMISTRY Y1 - 2006 SP - 8374 EP - 8385 VL - 78 IS - 24 UR - http://dx.doi.org/10.1021/ac0606251 ER - TY - JOUR A1 - Paul H. Pevsner A1 - Frederick Naftolin A1 - Dean E. Hillman A1 - Douglas C. Miller A1 - Ahmed Fadiel A1 - Alexander Kogus A1 - Arnold Stern A1 - Herbert H. Samuels T1 - Direct identification of proteins from T47D cells and murine brain tissue by matrix-assisted laser desorption/ionization post-source decay/collision-induced dissociation JO - Rapid Communications in Mass Spectrometry Y1 - 2007 SP - 429 EP - 436 VL - 21 IS - 3 UR - http://dx.doi.org/10.1002/rcm.2849 ER - TY - JOUR A1 - Wada Y A1 - Azadi P A1 - Costello CE A1 - Dell A A1 - Dwek RA A1 - Geyer H A1 - Geyer R A1 - Kakehi K A1 - Karlsson NG A1 - Kato K A1 - Kawasaki N A1 - Khoo KH A1 - Kim S A1 - Kondo A A1 - Lattova E A1 - Mechref Y A1 - Miyoshi E A1 - Nakamura K A1 - Narimatsu H A1 - Novotny MV A1 - Packer NH A1 - Perreault H A1 - Peter-Katalinic J A1 - Pohlentz T1 - Comparison of the Methods for Profiling Glycoprotein Glycans: HUPO HGPI (Human Proteome Organisation Human Disease Glycomics/Proteome Initiative) Multi-institutional Study JO - Glycobiology Y1 - 2007 SP - 411 EP - 22 VL - 17 IS - 4 UR - http://dx.doi.org/10.1093/glycob/cwl086 ER - TY - JOUR A1 - Biron DG A1 - Ponton F A1 - Marche L A1 - Galeotti N A1 - Renault L A1 - Demey-Thomas E A1 - Poncet J A1 - Brown SP A1 - Jouin P A1 - Thomas F T1 - 'Suicide' of crickets harbouring hairworms: a proteomics investigation JO - Insect Mol Biol Y1 - 2006 SP - 731 EP - 42 VL - 15 IS - 6 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17201766&dopt=Abstract ER - TY - JOUR A1 - deVera IE A1 - Katz JE A1 - Agus DB T1 - Clinical proteomics: the promises and challenges of mass spectrometry-based biomarker discovery JO - Clin Adv Hematol Oncol Y1 - 2006 SP - 541 EP - 9 VL - 4 IS - 7 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17147241&dopt=Abstract ER - TY - JOUR A1 - Boneca IG A1 - Dussurget O A1 - Cabanes D A1 - Nahori MA A1 - Sousa S A1 - Lecuit M A1 - Psylinakis E A1 - Bouriotis V A1 - Hugot JP A1 - Giovannini M A1 - Coyle A A1 - Bertin J A1 - Namane A A1 - Rousselle JC A1 - Cayet N A1 - Prevost MC A1 - Balloy V A1 - Chignard M A1 - Philpott DJ A1 - Cossart P A1 - Girardin SE T1 - A critical role for peptidoglycan N-deacetylation in Listeria evasion from the host innate immune system JO - Proc Natl Acad Sci U S A Y1 - 2007 SP - 997 EP - 1002 VL - 104 IS - 3 UR - http://dx.doi.org/10.1073/pnas.0609672104 ER - TY - JOUR A1 - Sato A A1 - Miyazaki E A1 - Satake A A1 - Hiramoto A A1 - Hiraoka O A1 - Miyake T A1 - Kim HS A1 - Wataya Y T1 - Proteome and transcriptome analysis of 5-fluoro-2'-deoxyuridine-induced cell death mechanisms JO - Y1 - SP - EP - VL - IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17150837&dopt=Abstract ER - TY - JOUR A1 - Ian Shadforth A1 - Conrad Bessant T1 - Genome annotating proteomics pipelines: available tools JO - Expert Review of Proteomics Y1 - 2006 SP - 621 EP - 629 VL - 3 IS - 6 UR - http://dx.doi.org/10.1586/14789450.3.6.621 ER - TY - JOUR A1 - Weiming Ruan A1 - Adam Sassoon A1 - Feng An A1 - Jeff P. Simko A1 - Bin Liu T1 - Identification of Clinically Significant Tumor Antigens by Selecting Phage Antibody Library on Tumor Cells in Situ Using Laser Capture Microdissection JO - Mol Cell Proteomics Y1 - 2006 SP - 2364 EP - 2373 VL - 5 IS - 12 UR - http://www.mcponline.org/cgi/content/abstract/5/12/2364?etoc ER - TY - JOUR A1 - Yoshihara T A1 - Kadota Y A1 - Yoshimura Y A1 - Tatano Y A1 - Takeuchi N A1 - Okitsu H A1 - Umemoto A A1 - Yamauchi T A1 - Itoh K T1 - Proteomic alteration in gastic adenocarcinomas from Japanese patients JO - Y1 - SP - EP - VL - IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17187689&dopt=Abstract ER - TY - JOUR A1 - Le Naour F T1 - Identification of tumor antigens by using proteomics JO - Methods Mol Biol Y1 - 2006 SP - 327 EP - 34 VL - 360 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17172737&dopt=Abstract ER - TY - JOUR A1 - Gramolini AO A1 - Kislinger T A1 - Liu P A1 - Maclennan DH A1 - Emili A T1 - Analyzing the cardiac muscle proteome by liquid chromatography-mass spectrometry-based expression proteomics JO - Methods Mol Biol Y1 - 2006 SP - 15 EP - 32 VL - 357 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17172675&dopt=Abstract ER - TY - JOUR A1 - Mirzaei H A1 - Regnier F T1 - Identification of yeast oxidized proteins Chromatographic top-down approach for identification of carbonylated, fragmented and cross-linked proteins in yeast JO - J Chromatogr A Y1 - 2007 SP - 22 EP - 31 VL - 1141 IS - 1 UR - http://dx.doi.org/10.1016/j.chroma.2006.11.009 ER - TY - JOUR A1 - McClelland CM A1 - Gullick WJ T1 - Proteomic identification of secreted proteins as surrogate markers for signal transduction inhibitor activity JO - Br J Cancer Y1 - 2007 SP - 284 EP - 9 VL - 96 IS - 2 UR - http://dx.doi.org/10.1038/sj.bjc.6603544 ER - TY - JOUR A1 - Michael G. Gravett A1 - Archana Thomas A1 - Kimberly A. Schneider A1 - Ashok P. Reddy A1 - Surendra Dasari A1 - Thomas Jacob A1 - Xinfang Lu A1 - Matthew Rodland A1 - Leonardo Pereira A1 - Drew W. Sadowsky A1 - Charles T. Roberts A1 - Jr. A1 - Miles J. Novy A1 - Srinivasa R. Nagalla T1 - Proteomic Analysis of Cervical-Vaginal Fluid: Identification of Novel Biomarkers for Detection of Intra-amniotic Infection JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2007 SP - 89 EP - 96 VL - 6 IS - 1 UR - http://dx.doi.org/10.1021/pr060149v ER - TY - JOUR A1 - Julian Vasilescu A1 - Daniel R. Zweitzig A1 - Nicholas J. Denis A1 - Jeffrey C. Smith A1 - Martin Ethier A1 - Dale S. Haines A1 - Daniel Figeys T1 - The Proteomic Reactor Facilitates the Analysis of Affinity-Purified Proteins by Mass Spectrometry: Application for Identifying Ubiquitinated Proteins in Human Cells JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2007 SP - 298 EP - 305 VL - 6 IS - 1 UR - http://dx.doi.org/10.1021/pr060438j ER - TY - JOUR A1 - Luque-Garcia JL A1 - Neubert TA T1 - Sample preparation for serum/plasma profiling and biomarker identification by mass spectrometry JO - Y1 - SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.chroma.2006.11.054 ER - TY - JOUR A1 - Jean Paul Brizard A1 - Christine Carapito A1 - Francois Delalande A1 - Alain Van Dorsselaer A1 - Christophe Brugidou T1 - Proteome Analysis of Plant-Virus Interactome: Comprehensive Data for Virus Multiplication Inside Their Hosts JO - Mol Cell Proteomics Y1 - 2006 SP - 2279 EP - 2297 VL - 5 IS - 12 UR - http://www.mcponline.org/cgi/content/abstract/5/12/2279?etoc ER - TY - JOUR A1 - L A Kung T1 - Proteome chips: a future perspective JO - Expert Review of Proteomics Y1 - 2006 SP - 565 EP - 567 VL - 3 IS - 6 UR - http://dx.doi.org/10.1586/14789450.3.6.565 ER - TY - JOUR A1 - Evgeniy V. Petrotchenko A1 - Dan Pasek A1 - Phillip Elms A1 - Nikolay V. Dokholyan A1 - Gerhard Meissner A1 - Christoph H. Borchers T1 - Combining Fluorescence Detection and Mass Spectrometric Analysis for Comprehensive and Quantitative Analysis of Redox-Sensitive Cysteines in Native Membrane Proteins JO - ANALYTICAL CHEMISTRY Y1 - 2006 SP - 7959 EP - 7966 VL - 78 IS - 23 UR - http://dx.doi.org/10.1021/ac060238r ER - TY - JOUR A1 - Matthiesen R T1 - Virtual Expert Mass Spectrometrist v3.0: An Integrated Tool for Proteome Analysis JO - Methods Mol Biol Y1 - 2006 SP - 121 EP - 38 VL - 367 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17185773&dopt=Abstract ER - TY - JOUR A1 - Pshezhetsky AV T1 - Proteomic analysis of vascular smooth muscle cells treated with ouabain JO - Methods Mol Biol Y1 - 2006 SP - 253 EP - 70 VL - 357 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17172693&dopt=Abstract ER - TY - JOUR A1 - Ye Liu A1 - Mei Kuen Tang A1 - Dong Qing Cai A1 - Ming Li A1 - Wan Man Wong A1 - Pak Ham Chow A1 - Kenneth K. H. Lee T1 - Cyclin I and p53 are differentially expressed during the terminal differentiation of the postnatal mouse heart JO - PROTEOMICS Y1 - 2007 SP - 23 EP - 32 VL - 7 IS - 1 UR - http://dx.doi.org/10.1002/pmic.200600456 ER - TY - JOUR A1 - Banci L A1 - Baumeister W A1 - Enfedaque J A1 - Heinemann U A1 - Schneider G A1 - Silman I A1 - Sussman JL T1 - Structural proteomics: from the molecule to the system JO - Nat Struct Mol Biol Y1 - 2007 SP - 3 EP - 4 VL - 14 IS - 1 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17203065&dopt=Abstract ER - TY - JOUR A1 - Collet M A1 - Lenger J A1 - Jenssen K A1 - Plattner HP A1 - Sewald N T1 - Molecular tools for metalloprotease sub-proteome generation JO - Y1 - SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.jbiotec.2006.12.005 ER - TY - JOUR A1 - Bond MR A1 - Kohler JJ T1 - Chemical methods for glycoprotein discovery JO - Curr Opin Chem Biol Y1 - 2007 SP - 52 EP - 8 VL - 11 IS - 1 UR - http://dx.doi.org/10.1016/j.cbpa.2006.11.032 ER - TY - JOUR A1 - Wickremsinhe ER A1 - Singh G A1 - Ackermann BL A1 - Gillespie TA A1 - Chaudhary AK T1 - A review of nanoelectrospray ionization applications for drug metabolism and pharmacokinetics JO - Curr Drug Metab Y1 - 2006 SP - 913 EP - 28 VL - 7 IS - 8 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17168691&dopt=Abstract ER - TY - JOUR A1 - Nan Wang A1 - Lauren MacKenzie A1 - Andrea G. De Souza A1 - Hongying Zhong A1 - Greg Goss A1 - Liang Li T1 - Proteome Profile of Cytosolic Component of Zebrafish Liver Generated by LC-ESI MS/MS Combined with Trypsin Digestion and Microwave-Assisted Acid Hydrolysis JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2007 SP - 263 EP - 272 VL - 6 IS - 1 UR - http://dx.doi.org/10.1021/pr060367o ER - TY - JOUR A1 - Ambrosius P. L. Snijders A1 - Bart de Koning A1 - Phillip C. Wright T1 - Relative Quantification of Proteins Across the Species Boundary Through the Use of Shared Peptides JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2007 SP - 97 EP - 104 VL - 6 IS - 1 UR - http://dx.doi.org/10.1021/pr0602139 ER - TY - JOUR A1 - Zang X A1 - Komatsu S T1 - A proteomics approach for identifying osmotic-stress-related proteins in rice JO - Phytochemistry Y1 - 2007 SP - 426 EP - 37 VL - 68 IS - 4 UR - http://dx.doi.org/10.1016/j.phytochem.2006.11.005 ER - TY - JOUR A1 - Tanner S A1 - Shen Z A1 - Ng J A1 - Florea L A1 - Guigo R A1 - Briggs SP A1 - Bafna V T1 - Improving gene annotation using peptide mass spectrometry JO - Genome Res Y1 - 2007 SP - 231 EP - 9 VL - 17 IS - 2 UR - http://dx.doi.org/10.1101/gr.5646507 ER - TY - JOUR A1 - Chen R A1 - Pan S A1 - Cooke K A1 - Moyes KW A1 - Bronner MP A1 - Goodlett DR A1 - Aebersold R A1 - Brentnall TA T1 - Comparison of pancreas juice proteins from cancer versus pancreatitis using quantitative proteomic analysis JO - Pancreas Y1 - 2007 SP - 70 EP - 9 VL - 34 IS - 1 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17198186&dopt=Abstract ER - TY - JOUR A1 - Queenie W. T. Chan A1 - Charles G. Howes A1 - Leonard J. Foster T1 - Quantitative Comparison of Caste Differences in Honeybee Hemolymph JO - Mol Cell Proteomics Y1 - 2006 SP - 2252 EP - 2262 VL - 5 IS - 12 UR - http://www.mcponline.org/cgi/content/abstract/5/12/2252?etoc ER - TY - JOUR A1 - Khalil AA A1 - James P T1 - Biomarker discovery: A proteomic approach for brain cancer profiling JO - Cancer Sci Y1 - 2007 SP - 201 EP - 13 VL - 98 IS - 2 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17233837&dopt=Abstract ER - TY - JOUR A1 - Lawrence G. Puente A1 - Sebastien Voisin A1 - Robin E. C. Lee A1 - Lynn A. Megeney T1 - Reconstructing the Regulatory Kinase Pathways of Myogenesis from Phosphopeptide Data JO - Mol Cell Proteomics Y1 - 2006 SP - 2244 EP - 2251 VL - 5 IS - 12 UR - http://www.mcponline.org/cgi/content/abstract/5/12/2244?etoc ER - TY - JOUR A1 - Lamesch P A1 - Li N A1 - Milstein S A1 - Fan C A1 - Hao T A1 - Szabo G A1 - Hu Z A1 - Venkatesan K A1 - Bethel G A1 - Martin P A1 - Rogers J A1 - Lawlor S A1 - McLaren S A1 - Dricot A A1 - Borick H A1 - Cusick ME A1 - Vandenhaute J A1 - Dunham I A1 - Hill DE A1 - Vidal M T1 - hORFeome v3.1: A resource of human open reading frames representing over 10,000 human genes JO - Genomics Y1 - 2007 SP - 307 EP - 15 VL - 89 IS - 3 UR - http://dx.doi.org/10.1016/j.ygeno.2006.11.012 ER - TY - JOUR A1 - Stea EA A1 - Routsias JG A1 - Samiotaki M A1 - Panayotou G A1 - Papalambros E A1 - Moutsopoulos HM A1 - Tzioufas AG T1 - Analysis of parotid glands of primary Sjogren's syndrome patients using proteomic technology reveals altered autoantigen composition and novel antigenic targets JO - Clin Exp Immunol Y1 - 2007 SP - 81 EP - 9 VL - 147 IS - 1 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17177966&dopt=Abstract ER - TY - JOUR A1 - Mueller M A1 - Martens L A1 - Apweiler R T1 - Annotating the human proteome: Beyond establishing a parts list JO - Biochim Biophys Acta Y1 - 2007 SP - 175 EP - 91 VL - 1774 IS - 2 UR - http://dx.doi.org/10.1016/j.bbapap.2006.11.011 ER - TY - JOUR A1 - Gafken PR A1 - Lampe PD T1 - Methodologies for characterizing phosphoproteins by mass spectrometry JO - Cell Commun Adhes Y1 - 2006 SP - 249 EP - 62 VL - 13 IS - 5 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17162667&dopt=Abstract ER - TY - JOUR A1 - Hui Zhang A1 - Alvin Y. Liu A1 - Paul Loriaux A1 - Bernd Wollscheid A1 - Yong Zhou A1 - Julian D. Watts A1 - Ruedi Aebersold T1 - Mass Spectrometric Detection of Tissue Proteins in Plasma JO - Mol Cell Proteomics Y1 - 2007 SP - 64 EP - 71 VL - 6 IS - 1 UR - http://www.mcponline.org/cgi/content/abstract/6/1/64?etoc ER - TY - JOUR A1 - Zhao B A1 - Yeo CC A1 - Tan CL A1 - Poh CL T1 - Proteome analysis of heat shock protein expression in Pseudomonas alcaligenes NCIMB 9867 in response to gentisate exposure and elevated growth temperature JO - Y1 - SP - EP - VL - IS - UR - http://dx.doi.org/10.1002/bit.21253 ER - TY - JOUR A1 - Friedman DB T1 - Quantitative proteomics for two-dimensional gels using difference gel electrophoresis JO - Methods Mol Biol Y1 - 2006 SP - 219 EP - 40 VL - 367 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17185779&dopt=Abstract ER - TY - JOUR A1 - Dunn MJ T1 - Two-dimensional polyacrylamide gel electrophoresis for cardiovascular proteomics JO - Methods Mol Biol Y1 - 2006 SP - 3 EP - 14 VL - 357 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17172674&dopt=Abstract ER - TY - JOUR A1 - Carlo Vascotto A1 - Anna Maria Salzano A1 - Chiara D'Ambrosio A1 - Arrigo Fruscalzo A1 - Diego Marchesoni A1 - Carla di Loreto,O Andrea Scaloni A1 - Gianluca Tell A1 - Franco Quadrifoglio T1 - Oxidized Transthyretin in Amniotic Fluid as an Early Marker of Preeclampsia JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2007 SP - 160 EP - 170 VL - 6 IS - 1 UR - http://dx.doi.org/10.1021/pr060315z ER - TY - JOUR A1 - Lopez JL T1 - Two-dimensional electrophoresis in proteome expression analysis JO - Y1 - SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.jchromb.2006.11.049 ER - TY - JOUR A1 - Eugenio Ragazzi A1 - Salvatore Pucciarelli A1 - Roberta Seraglia A1 - Laura Molin A1 - Marco Agostini A1 - Mario Lise A1 - Pietro Traldi A1 - Donato Nitti T1 - Multivariate analysis approach to the plasma protein profile of patients with advanced colorectal cancer JO - Journal of Mass Spectrometry Y1 - 2006 SP - 1546 EP - 1553 VL - 41 IS - 12 UR - http://dx.doi.org/10.1002/jms.1113 ER - TY - JOUR A1 - Raimund Hoffrogge A1 - Susanne Beyer A1 - Rayk Hübner A1 - Stefan Mikkat A1 - Eilhard Mix A1 - Christian Scharf A1 - Ulf Schmitz A1 - Stefan Pauleweit A1 - Matthias Berth A1 - Igor Z. 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Giron T1 - Identification of Proinflammatory Flagellin Proteins in Supernatants of Vibrio cholerae O1 by Proteomics Analysis JO - Mol Cell Proteomics Y1 - 2006 SP - 2374 EP - 2383 VL - 5 IS - 12 UR - http://www.mcponline.org/cgi/content/abstract/5/12/2374?etoc ER - TY - JOUR A1 - Tolmachev AV A1 - Monroe ME A1 - Jaitly N A1 - Petyuk VA A1 - Adkins JN A1 - Smith RD T1 - Mass measurement accuracy in analyses of highly complex mixtures based upon multidimensional recalibration JO - Anal Chem Y1 - 2006 SP - 8374 EP - 85 VL - 78 IS - 24 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17165830&dopt=Abstract ER - TY - JOUR A1 - Lee CJ A1 - Ariztia EV A1 - Fishman DA T1 - Conventional and proteomic technologies for the detection of early stage malignancies: markers for ovarian cancer JO - Crit Rev Clin Lab Sci Y1 - 2007 SP - 87 EP - 114 VL - 44 IS - 1 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17175521&dopt=Abstract ER - TY - JOUR A1 - Dustin Lippert A1 - Sunita Chowrira A1 - Steven Gregory Ralph A1 - Jun Zhuang A1 - Dana Aeschliman A1 - Carol Ritland A1 - Kermit Ritland A1 - Jörg Bohlmann T1 - Conifer defense against insects: Proteome analysis of Sitka spruce (Picea sitchensis) bark induced by mechanical wounding or feeding by white pine weevils (Pissodes strobi) JO - PROTEOMICS Y1 - 2007 SP - 248 EP - 270 VL - 7 IS - 2 UR - http://dx.doi.org/10.1002/pmic.200600525 ER - TY - JOUR A1 - Zhao R A1 - Houry WA T1 - Molecular interaction network of the Hsp90 chaperone system JO - Adv Exp Med Biol Y1 - 2007 SP - 27 EP - 36 VL - 594 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17205672&dopt=Abstract ER - TY - JOUR A1 - Henrik Ortsater A1 - Peter Bergsten T1 - Protein profiling of pancreatic islets JO - Expert Review of Proteomics Y1 - 2006 SP - 665 EP - 675 VL - 3 IS - 6 UR - http://dx.doi.org/10.1586/14789450.3.6.665 ER - TY - JOUR A1 - Linke T A1 - Doraiswamy S A1 - Harrison EH T1 - Rat plasma proteomics: Effects of abundant protein depletion on proteomic analysis JO - Y1 - SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.jchromb.2006.11.051 ER - TY - JOUR A1 - Lovinger DM T1 - Mixing proteomics and alcohol JO - Alcohol Y1 - 2006 SP - 1 EP - 2 VL - 40 IS - 1 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17157715&dopt=Abstract ER - TY - JOUR A1 - Germano Ferrari A1 - Roberta Pastorelli A1 - Francesca Buchi A1 - Elena Spinelli A1 - Antonella Gozzini A1 - Alberto Bosi A1 - Valeria Santini T1 - Comparative Proteomic Analysis of Chronic Myelogenous Leukemia Cells: Inside the Mechanism of Imatinib Resistance JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2007 SP - 367 EP - 375 VL - 6 IS - 1 UR - http://dx.doi.org/10.1021/pr0603708 ER - TY - JOUR A1 - Daniel Gotthardt A1 - Vincent Blancheteau A1 - Armin Bosserhoff A1 - Thomas Ruppert A1 - Mauro Delorenzi A1 - Thierry Soldati T1 - Proteomics Fingerprinting of Phagosome Maturation and Evidence for the Role of a G{alpha} during Uptake JO - Mol Cell Proteomics Y1 - 2006 SP - 2228 EP - 2243 VL - 5 IS - 12 UR - http://www.mcponline.org/cgi/content/abstract/5/12/2228?etoc ER - TY - JOUR A1 - Björn Renberg A1 - Jon Nordin A1 - Anna Merca A1 - Mathias Uhlén A1 - Joachim Feldwisch A1 - Per-Åke Nygren A1 - Amelie Eriksson Karlström T1 - Affibody Molecules in Protein Capture Microarrays: Evaluation of Multidomain Ligands and Different Detection Formats JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2007 SP - 171 EP - 179 VL - 6 IS - 1 UR - http://dx.doi.org/10.1021/pr060316r ER - TY - JOUR A1 - Walters DE T1 - Proteomics in Drug Research Edited by Michael Hamacher, Katrin Marcus, Kai Stuhler, Andre van Hall, Bettina Warscheid, and Helmut E. 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Schröder T1 - Analysis of serine proteases from marine sponges by 2-D zymography JO - ELECTROPHORESIS Y1 - 2007 SP - 429 EP - 436 VL - 28 IS - 3 UR - http://dx.doi.org/10.1002/elps.200600332 ER - TY - JOUR A1 - Soderberg O A1 - Leuchowius KJ A1 - Kamali-Moghaddam M A1 - Jarvius M A1 - Gustafsdottir S A1 - Schallmeiner E A1 - Gullberg M A1 - Jarvius J A1 - Landegren U T1 - Proximity ligation: a specific and versatile tool for the proteomic era JO - Genet Eng (N Y) Y1 - 2007 SP - 85 EP - 93 VL - 28 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17153934&dopt=Abstract ER - TY - JOUR A1 - Komori N A1 - Takemori N A1 - Kim HK A1 - Singh A A1 - Hwang SH A1 - Foreman R A1 - Chung K A1 - Chung JM A1 - Matsumoto H T1 - Proteomics study of neuropathic and non-neuropathic dorsal root ganglia: Altered protein regulation following segmental spinal nerve ligation injury JO - Y1 - SP - EP - VL - IS - UR - http://dx.doi.org/10.1152/physiolgenomics.00255.2006 ER - TY - JOUR A1 - Smalley DM A1 - Root KE A1 - Cho H A1 - Ross MM A1 - Ley K T1 - Proteomic discovery of 21 proteins expressed in human plasma-derived but not platelet-derived microparticles JO - Thromb Haemost Y1 - 2007 SP - 67 EP - 80 VL - 97 IS - 1 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17200773&dopt=Abstract ER - TY - JOUR A1 - Rainer M. Vallant A1 - Zoltan Szabo A1 - Lukas Trojer A1 - Muhammad Najam-ul-Haq A1 - Matthias Rainer A1 - Christian W. Huck A1 - Rania Bakry A1 - Günther K. Bonn T1 - A New Analytical Material-Enhanced Laser Desorption Ionization (MELDI) Based Approach for the Determination of Low-Mass Serum Constituents Using Fullerene Derivatives for Selective Enrichment JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2007 SP - 44 EP - 53 VL - 6 IS - 1 UR - http://dx.doi.org/10.1021/pr060347m ER - TY - JOUR A1 - Nahalka J A1 - Shao J A1 - Gemeiner P T1 - Oligosaccharides, neoglycoproteins and humanized plastics: their biocatalytic synthesis and possible medical applications JO - Biotechnol Appl Biochem Y1 - 2007 SP - 1 EP - 12 VL - 46 IS - Pt 1 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17155932&dopt=Abstract ER - TY - JOUR A1 - Thomsen AL A1 - Laukens K A1 - Matthiesen R A1 - Jensen ON T1 - Organization of Proteomics Data With YassDB JO - Methods Mol Biol Y1 - 2006 SP - 271 EP - 88 VL - 367 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17185782&dopt=Abstract ER - TY - JOUR A1 - Nakagawa T A1 - Huang SK A1 - Martinez SR A1 - Tran AN A1 - Elashoff D A1 - Ye X A1 - Turner RR A1 - Giuliano AE A1 - Hoon DS T1 - Proteomic profiling of primary breast cancer predicts axillary lymph node metastasis JO - Cancer Res Y1 - 2006 SP - 11825 EP - 30 VL - 66 IS - 24 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17178879&dopt=Abstract ER - TY - JOUR A1 - Todd McDonald A1 - Simon Sheng A1 - Brian Stanley A1 - Dawn Chen A1 - Young Ko A1 - RobertN. 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Van Eyk T1 - Expanding the Subproteome of the Inner Mitochondria Using Protein Separation Technologies: One- and Two-dimensional Liquid Chromatography and Two-dimensional Gel Electrophoresis JO - Mol Cell Proteomics Y1 - 2006 SP - 2392 EP - 2411 VL - 5 IS - 12 UR - http://www.mcponline.org/cgi/content/abstract/5/12/2392?etoc ER - TY - JOUR A1 - Muriel Hamelin A1 - Thierry Sayd A1 - Christophe Chambon A1 - Jaques Bouix A1 - Bernard Bibé A1 - Dragan Milenkovic A1 - Hubert Leveziel A1 - Michel Georges A1 - Alex Clop A1 - Penka Marinova A1 - Elisabeth Laville T1 - Differential expression of sarcoplasmic proteins in four heterogeneous ovine skeletal muscles JO - PROTEOMICS Y1 - 2007 SP - 271 EP - 280 VL - 7 IS - 2 UR - http://dx.doi.org/10.1002/pmic.200600309 ER - TY - JOUR A1 - Bovenkamp DE A1 - Stanley BA A1 - Van Eyk JE T1 - Optimization of Cardiac Troponin I Pull-Down by IDM Affinity Beads and SELDI JO - Methods Mol Biol Y1 - 2006 SP - 91 EP - 102 VL - 357 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17172682&dopt=Abstract ER - TY - JOUR A1 - Kjaersgard IV A1 - Norrelykke MR A1 - Baron CP A1 - Jessen F T1 - Identification of Carbonylated Protein in Frozen Rainbow Trout (Oncorhynchus mykiss) Fillets and Development of Protein Oxidation during Frozen Storage JO - J Agric Food Chem Y1 - 2006 SP - 9437 EP - 9446 VL - 54 IS - 25 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17147430&dopt=Abstract ER - TY - JOUR A1 - Sinha A A1 - Singh C A1 - Parmar D A1 - Singh MP T1 - Proteomics in clinical interventions: Achievements and limitations in biomarker development JO - Life Sci Y1 - 2007 SP - 1345 EP - 54 VL - 80 IS - 15 UR - http://dx.doi.org/10.1016/j.lfs.2006.12.005 ER - TY - JOUR A1 - Hagerty L A1 - Weitzel DH A1 - Chambers J A1 - Fortner CN A1 - Brush MH A1 - Loiselle D A1 - Hosoya H A1 - Haystead TA T1 - ROCK1 phosphorylates and activates ZIP kinase JO - J Biol Chem Y1 - 2007 SP - 4884 EP - 93 VL - 282 IS - 7 UR - http://dx.doi.org/10.1074/jbc.M609990200 ER - TY - JOUR A1 - William E. Running A1 - Shobha Ravipaty A1 - Jonathan A. Karty A1 - James P. Reilly T1 - A Top-Down/Bottom-Up Study of the Ribosomal Proteins of Caulobacter crescentus JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2007 SP - 337 EP - 347 VL - 6 IS - 1 UR - http://dx.doi.org/10.1021/pr060306q ER - TY - JOUR A1 - I. Ross Young A1 - Gregory E. Rice A1 - Hannah K. Palliser A1 - Mustafa Ayhan A1 - Nicole L. Dellios A1 - Jonathan J. Hirst T1 - Identification of bactenecin-1 in cervicovaginal fluid by two-dimensional electrophoresis in an ovine model of preterm labour JO - PROTEOMICS Y1 - 2007 SP - 281 EP - 288 VL - 7 IS - 2 UR - http://dx.doi.org/10.1002/pmic.200500705 ER - TY - JOUR A1 - Pinto PM A1 - Chemale G A1 - de Castro LA A1 - Costa AP A1 - Kich JD A1 - Vainstein MH A1 - Zaha A A1 - Ferreira HB T1 - Proteomic survey of the pathogenic Mycoplasma hyopneumoniae strain 7448 and identification of novel post-translationally modified and antigenic proteins JO - Vet Microbiol Y1 - 2007 SP - 83 EP - 93 VL - 121 IS - 1-2 UR - http://dx.doi.org/10.1016/j.vetmic.2006.11.018 ER - TY - JOUR A1 - Tang VW T1 - Proteomic and bioinformatic analysis of epithelial tight junction reveals an unexpected cluster of synaptic molecules JO - Y1 - SP - EP - VL - IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17156438&dopt=Abstract ER - TY - JOUR A1 - Kern A A1 - Tilley E A1 - Hunter IS A1 - Legisa M A1 - Glieder A T1 - Engineering primary metabolic pathways of industrial micro-organisms JO - J Biotechnol Y1 - 2007 SP - 6 EP - 29 VL - 129 IS - 1 UR - http://dx.doi.org/10.1016/j.jbiotec.2006.11.021 ER - TY - JOUR A1 - Massignan T A1 - Casoni F A1 - Basso M A1 - Stefanazzi P A1 - Biasini E A1 - Tortarolo M A1 - Salmona M A1 - Gianazza E A1 - Bendotti C A1 - Bonetto V T1 - Proteomic analysis of spinal cord of presymptomatic amyotrophic lateral sclerosis G93A SOD1 mouse JO - Biochem Biophys Res Commun Y1 - 2007 SP - 719 EP - 25 VL - 353 IS - 3 UR - http://dx.doi.org/10.1016/j.bbrc.2006.12.075 ER - TY - JOUR A1 - Bark SJ A1 - Hook V T1 - The future of proteomic analysis in biological systems and molecular medicine JO - Mol Biosyst Y1 - 2007 SP - 14 EP - 7 VL - 3 IS - 1 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17216050&dopt=Abstract ER - TY - JOUR A1 - Green KD A1 - Pflum MK T1 - Kinase-catalyzed biotinylation for phosphoprotein detection JO - J Am Chem Soc Y1 - 2007 SP - 10 EP - 1 VL - 129 IS - 1 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17199263&dopt=Abstract ER - TY - JOUR A1 - Visser NF A1 - Scholten A A1 - van den Heuvel RH A1 - Heck AJ T1 - Surface-Plasmon-Resonance-Based Chemical Proteomics: Efficient Specific Extraction and Semiquantitative Identification of Cyclic Nucleotide-Binding Proteins from Cellular Lysates by Using a Combination of Surface Plasmon Resonance, Sequential Elution and JO - Y1 - SP - EP - VL - IS - UR - http://dx.doi.org/10.1002/cbic.200600449 ER - TY - JOUR A1 - Christoph Freiberg A1 - Nina Brunner A1 - Ludwig Macko A1 - Hans Peter Fischer T1 - Discovering Antibiotic Efficacy Biomarkers: TOWARD MECHANISM-SPECIFIC HIGH CONTENT COMPOUND SCREENING JO - Mol Cell Proteomics Y1 - 2006 SP - 2326 EP - 2335 VL - 5 IS - 12 UR - http://www.mcponline.org/cgi/content/abstract/5/12/2326?etoc ER - TY - JOUR A1 - Matthias Rainer A1 - Muhammad Najam-ul-Haq A1 - Rania Bakry A1 - Christian W. Huck A1 - Günther K. Bonn T1 - Mass Spectrometric Identification of Serum Peptides Employing Derivatized Poly(glycidyl methacrylate/divinyl benzene) Particles and -HPLC JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2007 SP - 382 EP - 386 VL - 6 IS - 1 UR - http://dx.doi.org/10.1021/pr060426y ER - TY - JOUR A1 - Grant Smolenski A1 - Stephen Haines A1 - Fiona Y.-S. Kwan A1 - Jude Bond A1 - Vicki Farr A1 - Stephen R. Davis A1 - Kerst Stelwagen A1 - Thomas T. Wheeler T1 - Characterisation of Host Defence Proteins in Milk Using a Proteomic Approach JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2007 SP - 207 EP - 215 VL - 6 IS - 1 UR - http://dx.doi.org/10.1021/pr0603405 ER - TY - JOUR A1 - Petra Mannova A1 - Ruihua Fang A1 - Hong Wang A1 - Bin Deng A1 - Martin W. McIntosh A1 - Samir M. Hanash A1 - Laura Beretta T1 - Modification of Host Lipid Raft Proteome upon Hepatitis C Virus Replication JO - Mol Cell Proteomics Y1 - 2006 SP - 2319 EP - 2325 VL - 5 IS - 12 UR - http://www.mcponline.org/cgi/content/abstract/5/12/2319?etoc ER - TY - JOUR A1 - Fearnley IM A1 - Carroll J A1 - Walker JE T1 - Proteomic Analysis of the Subunit Composition of Complex I (NADH:Ubiquinone Oxidoreductase) From Bovine Heart Mitochondria JO - Methods Mol Biol Y1 - 2006 SP - 103 EP - 26 VL - 357 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17172683&dopt=Abstract ER - TY - JOUR A1 - Tanito M A1 - Haniu H A1 - Elliott MH A1 - Singh AK A1 - Matsumoto H A1 - Anderson RE T1 - Identification of 4-hydroxynonenal-modified retinal proteins induced by photooxidative stress prior to retinal degeneration JO - Free Radic Biol Med Y1 - 2006 SP - 1847 EP - 59 VL - 41 IS - 12 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17157187&dopt=Abstract ER - TY - JOUR A1 - Marek Babu?iak A1 - Petr Man A1 - Jiri Petrak A1 - Daniel Vyoral T1 - Native proteomic analysis of protein complexes in murine intestinal brush border membranes JO - PROTEOMICS Y1 - 2007 SP - 121 EP - 129 VL - 7 IS - 1 UR - http://dx.doi.org/10.1002/pmic.200600382 ER - TY - JOUR A1 - Linfeng Wu A1 - David K Han T1 - Overcoming the dynamic range problem in mass spectrometry-based shotgun proteomics JO - Expert Review of Proteomics Y1 - 2006 SP - 611 EP - 619 VL - 3 IS - 6 UR - http://dx.doi.org/10.1586/14789450.3.6.611 ER - TY - JOUR A1 - Tom Exner A1 - Margo Honeyman T1 - Joel Margolis MB, BS, D Phil, D Sc, FRACPath 02.07.1920 - 02.04.2006 Pioneer in Proteomics, Coagulation, Citation indexing and Commercialization in Science JO - ELECTROPHORESIS Y1 - 2007 SP - 287 EP - 289 VL - 28 IS - 3 UR - http://dx.doi.org/10.1002/elps.200790006 ER - TY - JOUR A1 - Christiane Lohaus A1 - Andreas Nolte A1 - Martin Blüggel A1 - Christian Scheer A1 - Joachim Klose A1 - Johan Gobom A1 - Andreas Schüler A1 - Thomas Wiebringhaus A1 - Helmut E. Meyer A1 - Katrin Marcus T1 - Multidimensional Chromatography: a Powerful Tool for the Analysis of Membrane Proteins in Mouse Brain JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2007 SP - 105 EP - 113 VL - 6 IS - 1 UR - http://dx.doi.org/10.1021/pr060247g ER - TY - JOUR A1 - Bae K A1 - Lee K A1 - Seo Y A1 - Lee H A1 - Kim D A1 - Choi I T1 - Differential effects of two period genes on the physiology and proteomic profiles of mouse anterior tibialis muscles JO - Mol Cells Y1 - 2006 SP - 275 EP - 84 VL - 22 IS - 3 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17202855&dopt=Abstract ER - TY - JOUR A1 - Faurobert M A1 - Mihr C A1 - Bertin N A1 - Pawlowski T A1 - Negroni L A1 - Sommerer N A1 - Causse M T1 - Major Proteome Variations Associated with Cherry Tomato Pericarp Development and Ripening JO - Plant Physiol Y1 - 2007 SP - 1327 EP - 46 VL - 143 IS - 3 UR - http://dx.doi.org/10.1104/pp.106.092817 ER - TY - JOUR A1 - Edward L. Huttlin A1 - Adrian D. Hegeman A1 - Amy C. Harms A1 - Michael R. Sussman T1 - Prediction of Error Associated with False-Positive Rate Determination for Peptide Identification in Large-Scale Proteomics Experiments Using a Combined Reverse and Forward Peptide Sequence Database Strategy JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2007 SP - 392 EP - 398 VL - 6 IS - 1 UR - http://dx.doi.org/10.1021/pr0603194 ER - TY - JOUR A1 - Schaefer H A1 - Chamrad DC A1 - Herrmann M A1 - Stuwe J A1 - Becker G A1 - Klose J A1 - Blueggel M A1 - Meyer HE A1 - Marcus K T1 - Study of posttranslational modifications in lenticular alphaA-Crystallin of mice using proteomic analysis techniques JO - Biochim Biophys Acta Y1 - 2006 SP - 1948 EP - 62 VL - 1764 IS - 12 UR - http://dx.doi.org/10.1016/j.bbapap.2006.10.004 ER - TY - JOUR A1 - Youra Lee A1 - Hye-won Park A1 - Sung Goo Park A1 - Sayeon Cho A1 - Pyung Keun Myung A1 - Byoung Chul Park A1 - Do Hee Lee T1 - Proteomic analysis of glutamate-induced toxicity in HT22 cells JO - PROTEOMICS Y1 - 2007 SP - 185 EP - 193 VL - 7 IS - 2 UR - http://dx.doi.org/10.1002/pmic.200600644 ER - TY - JOUR A1 - Ohtsu K A1 - Takahashi H A1 - Schnable PS A1 - Nakazono M T1 - Cell type-specific gene expression profiling in plants by using a combination of laser microdissection and high-throughput technologies JO - Plant Cell Physiol Y1 - 2007 SP - 3 EP - 7 VL - 48 IS - 1 UR - http://dx.doi.org/10.1093/pcp/pcl049 ER - TY - JOUR A1 - Sun LZ A1 - Yang NN A1 - De W A1 - Xiao YS T1 - Proteomic Analysis of Proteins Differentially Expressed in Preeclamptic Trophoblasts JO - Gynecol Obstet Invest Y1 - 2007 SP - 17 EP - 23 VL - 64 IS - 1 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17199091&dopt=Abstract ER - TY - JOUR A1 - Doll D A1 - Sarikas A A1 - Krajcik R A1 - Zolk O T1 - Proteomic expression analysis of cardiomyocytes subjected to proteasome inhibition JO - Biochem Biophys Res Commun Y1 - 2007 SP - 436 EP - 42 VL - 353 IS - 2 UR - http://dx.doi.org/10.1016/j.bbrc.2006.12.039 ER - TY - JOUR A1 - Matthiesen R A1 - Mutenda KE T1 - Introduction to proteomics JO - Methods Mol Biol Y1 - 2006 SP - 1 EP - 36 VL - 367 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17185767&dopt=Abstract ER - TY - JOUR A1 - Nesvizhskii AI T1 - Protein identification by tandem mass spectrometry and sequence database searching JO - Methods Mol Biol Y1 - 2006 SP - 87 EP - 120 VL - 367 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17185772&dopt=Abstract ER - TY - JOUR A1 - Hittel DS A1 - Hathout Y A1 - Hoffman EP T1 - Proteomics and systems biology in exercise and sport sciences research JO - Exerc Sport Sci Rev Y1 - 2007 SP - 5 EP - 11 VL - 35 IS - 1 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17211187&dopt=Abstract ER - TY - JOUR A1 - Lazaro A A1 - Gallego-Delgado J A1 - Osende JI A1 - Egido J A1 - Vivanco F T1 - Analysis of antihypertensive drugs in the heart of animal models: a proteomic approach JO - Methods Mol Biol Y1 - 2006 SP - 45 EP - 58 VL - 357 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17172677&dopt=Abstract ER - TY - JOUR A1 - Habermann JK A1 - Roblick UJ A1 - Upender M A1 - Ried T A1 - Auer G T1 - From genome to proteome in tumor profiling: molecular events in colorectal cancer genesis JO - Adv Exp Med Biol Y1 - 2006 SP - 161 EP - 77 VL - 587 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17163165&dopt=Abstract ER - TY - JOUR A1 - Alexander Ivanovich Archakov A1 - Yurii Dmitrievich Ivanov A1 - Andrey Valerevich Lisitsa A1 - Victor Gavrilovich Zgoda T1 - AFM fishing nanotechnology is the way to reverse the Avogadro number in proteomics JO - PROTEOMICS Y1 - 2007 SP - 4 EP - 9 VL - 7 IS - 1 UR - http://dx.doi.org/10.1002/pmic.200600467 ER - TY - JOUR A1 - Cekaite L A1 - Hovig E A1 - Sioud M T1 - Protein arrays: a versatile toolbox for target identification and monitoring of patient immune responses JO - Methods Mol Biol Y1 - 2006 SP - 335 EP - 48 VL - 360 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17172738&dopt=Abstract ER - TY - JOUR A1 - Reynolds JL A1 - Mahajan SD A1 - Sykes D A1 - Nair MP T1 - Heroin-Induces Differential Protein Expression by Normal Human Astrocytes (NHA) JO - Am J Infect Dis Y1 - 2006 SP - 49 EP - 57 VL - 2 IS - 2 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17235376&dopt=Abstract ER - TY - JOUR A1 - Bruno Meunier A1 - Emilie Dumas A1 - Isabelle Piec A1 - Daniel Béchet A1 - Michel Hébraud A1 - Jean-François Hocquette T1 - Assessment of Hierarchical Clustering Methodologies for Proteomic Data Mining JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2007 SP - 358 EP - 366 VL - 6 IS - 1 UR - http://dx.doi.org/10.1021/pr060343h ER - TY - JOUR A1 - Huiwen Zhang A1 - Xiaolian Fan A1 - Richard D. Bagshaw A1 - Li Zhang A1 - Don J. Mahuran A1 - John W. Callahan T1 - Lysosomal Membranes from Beige Mice Contain Higher Than Normal Levels of Endoplasmic Reticulum Proteins JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2007 SP - 240 EP - 249 VL - 6 IS - 1 UR - http://dx.doi.org/10.1021/pr060407o ER - TY - JOUR A1 - Busto ME A1 - Montes-Bayon M A1 - Sanz-Medel A T1 - Accurate determination of human serum transferrin isoforms: exploring metal-specific isotope dilution analysis as a quantitative proteomic tool JO - Anal Chem Y1 - 2006 SP - 8218 EP - 26 VL - 78 IS - 24 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17165810&dopt=Abstract ER - TY - JOUR A1 - Bhojwani M A1 - Rudolph E A1 - Kanitz W A1 - Zuehlke H A1 - Schneider F A1 - Tomek W T1 - Molecular Analysis of Maturation Processes by Protein and Phosphoprotein Profiling during In Vitro Maturation of Bovine Oocytes: A Proteomic Approach JO - Cloning Stem Cells Y1 - 2006 SP - 259 EP - 74 VL - 8 IS - 4 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17196091&dopt=Abstract ER - TY - JOUR A1 - Victoria Naranjo A1 - Margarita Villar A1 - Ma Paz Martín-Hernando A1 - Dolors Vidal A1 - Ursula Höfle A1 - Christian Gortazar A1 - Katherine M. Kocan A1 - Jesús Vázquez A1 - José de la Fuente T1 - Proteomic and transcriptomic analyses of differential stress/inflammatory responses in mandibular lymph nodes and oropharyngeal tonsils of European wild boars naturally infected with Mycobacterium bovis JO - PROTEOMICS Y1 - 2007 SP - 220 EP - 231 VL - 7 IS - 2 UR - http://dx.doi.org/10.1002/pmic.200600527 ER - TY - JOUR A1 - Aleksandar Backovic A1 - Hong-Lei Huang A1 - Barbara Del Frari A1 - Hildegunde Piza A1 - Lukas A. Huber A1 - Georg Wick T1 - Identification and Dynamics of Proteins Adhering To the Surface of Medical Silicones in Vivo and in Vitro JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2007 SP - 376 EP - 381 VL - 6 IS - 1 UR - http://dx.doi.org/10.1021/pr0603755 ER - TY - JOUR A1 - Shaojun Sun A1 - Karen Meyer-Arendt A1 - Brian Eichelberger A1 - Robert Brown A1 - Chia-Yu Yen A1 - William M. Old A1 - Kevin Pierce A1 - Krzysztof J. Cios A1 - Natalie G. Ahn A1 - Katheryn A. Resing T1 - Improved Validation of Peptide MS/MS Assignments Using Spectral Intensity Prediction JO - Mol Cell Proteomics Y1 - 2007 SP - 1 EP - 17 VL - 6 IS - 1 UR - http://www.mcponline.org/cgi/content/abstract/6/1/1?etoc ER - TY - JOUR A1 - Laura Smith T1 - Proteomics: challenges and emerging technologies, EuroSciCon JO - Expert Review of Proteomics Y1 - 2006 SP - 573 EP - 577 VL - 3 IS - 6 UR - http://dx.doi.org/10.1586/14789450.3.6.573 ER - TY - JOUR A1 - Ahsan N A1 - Lee DG A1 - Lee SH A1 - Kang KY A1 - Lee JJ A1 - Kim PJ A1 - Yoon HS A1 - Kim JS A1 - Lee BH T1 - Excess copper induced physiological and proteomic changes in germinating rice seeds JO - Chemosphere Y1 - 2007 SP - 1182 EP - 93 VL - 67 IS - 6 UR - http://dx.doi.org/10.1016/j.chemosphere.2006.10.075 ER - TY - JOUR A1 - Lee J A1 - Cooper B T1 - Alternative workflows for plant proteomic analysis JO - Mol Biosyst Y1 - 2006 SP - 621 EP - 6 VL - 2 IS - 12 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17216043&dopt=Abstract ER - TY - JOUR A1 - Corbett BA A1 - Kantor AB A1 - Schulman H A1 - Walker WL A1 - Lit L A1 - Ashwood P A1 - Rocke DM A1 - Sharp FR T1 - A proteomic study of serum from children with autism showing differential expression of apolipoproteins and complement proteins JO - Mol Psychiatry Y1 - 2007 SP - 292 EP - 306 VL - 12 IS - 3 UR - http://dx.doi.org/10.1038/sj.mp.4001943 ER - TY - JOUR A1 - Chen Y A1 - Schnetz MP A1 - Irarrazabal CE A1 - Shen RF A1 - Williams CK A1 - Burg M A1 - Ferraris JD T1 - Proteomic identification of proteins associated with the osmoregulatory transcription factor TonEBP/OREBP; functional effects of Hsp90 and PARP-1 JO - Am J Physiol Renal Physiol Y1 - 2007 SP - F981 EP - 92 VL - 292 IS - 3 UR - http://dx.doi.org/10.1152/ajprenal.00493.2005 ER - TY - JOUR A1 - Lijie Men and Yinsheng Wang T1 - The Oxidation of Yeast Alcohol Dehydrogenase-1 by Hydrogen Peroxide in Vitro JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2007 SP - 216 EP - 225 VL - 6 IS - 1 UR - http://dx.doi.org/10.1021/pr0603809 ER - TY - JOUR A1 - Wang CC A1 - Yim KW A1 - Poon TC A1 - Choy KW A1 - Chu CY A1 - Lui WT A1 - Lau TK A1 - Rogers MS A1 - Leung TN T1 - Innate immune response by ficolin binding in apoptotic placenta is associated with the clinical syndrome of preeclampsia JO - Clin Chem Y1 - 2007 SP - 42 EP - 52 VL - 53 IS - 1 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17202497&dopt=Abstract ER - TY - JOUR A1 - de Groot PW A1 - Yin QY A1 - Weig M A1 - Sosinska GJ A1 - Klis FM A1 - de Koster CG T1 - Mass spectrometric identification of covalently bound cell wall proteins from the fission yeast Schizosaccharomyces pombe JO - Yeast Y1 - 2007 SP - 267 EP - 278 VL - 24 IS - 4 UR - http://dx.doi.org/10.1002/yea.1443 ER - TY - JOUR A1 - Schilling O A1 - Overall CM T1 - Proteomic discovery of protease substrates JO - Curr Opin Chem Biol Y1 - 2007 SP - 36 EP - 45 VL - 11 IS - 1 UR - http://dx.doi.org/10.1016/j.cbpa.2006.11.037 ER - TY - JOUR A1 - Ari M. Frank A1 - Mikhail M. Savitski A1 - Michael L. Nielsen A1 - Roman A. Zubarev A1 - Pavel A. Pevzner T1 - De Novo Peptide Sequencing and Identification with Precision Mass Spectrometry JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2007 SP - 114 EP - 123 VL - 6 IS - 1 UR - http://dx.doi.org/10.1021/pr060271u ER - TY - JOUR A1 - Kurosaki H A1 - Kazuki Y A1 - Hiratsuka M A1 - Inoue T A1 - Matsui Y A1 - Wang CC A1 - Kanatsu-Shinohara M A1 - Shinohara T A1 - Toda T A1 - Oshimura M T1 - A comparison study in the proteomic signatures of multipotent germline stem cells, embryonic stem cells, and germline stem cells JO - Biochem Biophys Res Commun Y1 - 2007 SP - 259 EP - 67 VL - 353 IS - 2 UR - http://dx.doi.org/10.1016/j.bbrc.2006.12.025 ER - TY - JOUR A1 - Sanjin Zvonic A1 - Michael Lefevre A1 - Gail Kilroy A1 - Z. Elizabeth Floyd A1 - JamesP. DeLany A1 - Indu Kheterpal A1 - Amy Gravois A1 - Ryan Dow A1 - Angie White A1 - Xiying Wu A1 - Jeffrey M. Gimble T1 - Secretome of Primary Cultures of Human Adipose-derived Stem Cells: Modulation of Serpins by Adipogenesis JO - Mol Cell Proteomics Y1 - 2007 SP - 18 EP - 28 VL - 6 IS - 1 UR - http://www.mcponline.org/cgi/content/abstract/6/1/18?etoc ER - TY - JOUR A1 - Josic D A1 - Clifton JG T1 - Use of monolithic supports in proteomics technology JO - J Chromatogr A Y1 - 2007 SP - 2 EP - 13 VL - 1144 IS - 1 UR - http://dx.doi.org/10.1016/j.chroma.2006.11.082 ER - TY - JOUR A1 - Wormuth D A1 - Heiber I A1 - Shaikali J A1 - Kandlbinder A A1 - Baier M A1 - Dietz KJ T1 - Redox regulation and antioxidative defence in Arabidopsis leaves viewed from a systems biology perspective JO - Y1 - SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.jbiotec.2006.12.006 ER - TY - JOUR A1 - Nazila Salamat-Miller A1 - Jianwen Fang A1 - Christopher W. Seidel A1 - Aaron M. Smalter A1 - Yassen Assenov A1 - Mario Albrecht A1 - C. Russell Middaugh T1 - A Network-based Analysis of Polyanion-binding Proteins Utilizing Yeast Protein Arrays JO - Mol Cell Proteomics Y1 - 2006 SP - 2263 EP - 2278 VL - 5 IS - 12 UR - http://www.mcponline.org/cgi/content/abstract/5/12/2263?etoc ER - TY - JOUR A1 - Rachel Navet A1 - Gregory Mathy A1 - Pierre Douette A1 - Rowan Laura Dobson A1 - Pierre Leprince A1 - Edwin De Pauw A1 - Claudine Sluse-Goffart A1 - Francis E. Sluse T1 - Mitoproteome Plasticity of Rat Brown Adipocytes in Response to Cold Acclimation JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2007 SP - 25 EP - 33 VL - 6 IS - 1 UR - http://dx.doi.org/10.1021/pr060064u ER - TY - JOUR A1 - Herosimczyk A A1 - Dejeans N A1 - Sayd T A1 - Ozgo M A1 - Skrzypczak WF A1 - Mazur A T1 - Plasma proteome analysis: 2D gels and chips JO - J Physiol Pharmacol Y1 - 2006 SP - 81 EP - 93 VL - 57 IS - Suppl 7 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17228097&dopt=Abstract ER - TY - JOUR A1 - Bandow JE A1 - Hecker M T1 - Proteomic profiling of cellular stresses in Bacillus subtilis reveals cellular networks and assists in elucidating antibiotic mechanisms of action JO - Prog Drug Res Y1 - 2007 SP - 79: 81 EP - 101 VL - 64 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17195472&dopt=Abstract ER - TY - JOUR A1 - Thelin WR A1 - Chen Y A1 - Gentzsch M A1 - Kreda SM A1 - Sallee JL A1 - Scarlett CO A1 - Borchers CH A1 - Jacobson K A1 - Stutts MJ A1 - Milgram SL T1 - Direct interaction with filamins modulates the stability and plasma membrane expression of CFTR JO - J Clin Invest Y1 - 2007 SP - 364 EP - 74 VL - 117 IS - 2 UR - http://dx.doi.org/10.1172/JCI30376 ER - TY - JOUR A1 - Zilm PS A1 - Bagley CJ A1 - Rogers AH A1 - Milne IR A1 - Gully NJ T1 - The proteomic profile of Fusobacterium nucleatum is regulated by growth pH JO - Microbiology Y1 - 2007 SP - 148 EP - 59 VL - 153 IS - Pt 1 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17185543&dopt=Abstract ER - TY - JOUR A1 - Bauer JW A1 - Baechler EC A1 - Petri M A1 - Batliwalla FM A1 - Crawford D A1 - Ortmann WA A1 - Espe KJ A1 - Li W A1 - Patel DD A1 - Gregersen PK A1 - Behrens TW T1 - Elevated Serum Levels of Interferon-Regulated Chemokines Are Biomarkers for Active Human Systemic Lupus Erythematosus JO - Y1 - SP - EP - VL - IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17177599&dopt=Abstract ER - TY - JOUR A1 - Cheng-Tai Chen A1 - Wei-Yu Chen A1 - Pei-Jane Tsai A1 - Kun-Yi Chien A1 - Jau-Song Yu A1 - Yu-Chie Chen T1 - Rapid Enrichment of Phosphopeptides and Phosphoproteins from Complex Samples Using Magnetic Particles Coated with Alumina as the Concentrating Probes for MALDI MS Analysis JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2007 SP - 316 EP - 325 VL - 6 IS - 1 UR - http://dx.doi.org/10.1021/pr0604460 ER - TY - JOUR A1 - Fu Q A1 - Bovenkamp DE A1 - Van Eyk JE T1 - A rapid, economical, and reproducible method for human serum delipidation and albumin and IgG removal for proteomic analysis JO - Methods Mol Biol Y1 - 2006 SP - 365 EP - 72 VL - 357 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17172702&dopt=Abstract ER - TY - JOUR A1 - Arsalan S. Haqqani A1 - John Kelly A1 - Ewa Baumann A1 - Reiner F. Haseloff A1 - Ingolf E. Blasig A1 - Danica B. Stanimirovic T1 - Protein Markers of Ischemic Insult in Brain Endothelial Cells Identified Using 2D Gel Electrophoresis and ICAT-Based Quantitative Proteomics JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2007 SP - 226 EP - 239 VL - 6 IS - 1 UR - http://dx.doi.org/10.1021/pr0603811 ER - TY - JOUR A1 - M. Estela del Castillo Busto A1 - Maria Montes-Bayón A1 - Alfredo Sanz-Medel T1 - Accurate Determination of Human Serum Transferrin Isoforms: Exploring Metal-Specific Isotope Dilution Analysis as a Quantitative Proteomic Tool JO - ANALYTICAL CHEMISTRY Y1 - 2006 SP - 8218 EP - 8226 VL - 78 IS - 24 UR - http://dx.doi.org/10.1021/ac060956d ER - TY - JOUR A1 - Zheng S A1 - Ponder MA A1 - Shih JY A1 - Tiedje JM A1 - Thomashow MF A1 - Lubman DM T1 - A proteomic analysis of Psychrobacter articus 273-4 adaptation to low temperature and salinity using a 2-D liquid mapping approach JO - Electrophoresis Y1 - 2007 SP - 467 EP - 88 VL - 28 IS - 3 UR - http://dx.doi.org/10.1002/elps.200600173 ER - TY - JOUR A1 - Comuzzi B A1 - Sadar MD T1 - Proteomic analyses to identify novel therapeutic targets for the treatment of advanced prostate cancer JO - Cellscience Y1 - 2006 SP - 61 EP - 81 VL - 3 IS - 1 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17205105&dopt=Abstract ER - TY - JOUR A1 - Zhang K A1 - Wu S A1 - Tang X A1 - Kaiser NK A1 - Bruce JE T1 - A bifunctional monolithic column for combined protein preconcentration and digestion for high throughput proteomics research JO - Y1 - SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.jchromb.2006.11.029 ER - TY - JOUR A1 - Jochen M. Schwenk A1 - Johan Lindberg A1 - Marten Sundberg A1 - Mathias Uhlen A1 - andPeter Nilsson T1 - Determination of Binding Specificities in Highly Multiplexed Bead-based Assays for Antibody Proteomics JO - Mol Cell Proteomics Y1 - 2007 SP - 125 EP - 132 VL - 6 IS - 1 UR - http://www.mcponline.org/cgi/content/abstract/6/1/125?etoc ER - TY - JOUR A1 - Queloz PA A1 - Crettaz D A1 - Thadikkaran L A1 - Sapin V A1 - Gallot D A1 - Jani J A1 - Deprest J A1 - Lemery D A1 - Barelli S A1 - Tissot JD T1 - Proteomic analyses of amniotic fluid: Potential applications in health and diseases JO - Y1 - SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.jchromb.2006.12.006 ER - TY - JOUR A1 - Paul A. Fowler A1 - Jenny Tattum A1 - Siladitya Bhattacharya A1 - Thomas Klonisch A1 - Sabine Hombach-Klonisch A1 - Rafet Gazvani A1 - Richard G. Lea A1 - Iain Miller A1 - William G. Simpson A1 - Phillip Cash T1 - An investigation of the effects of endometriosis on the proteome of human eutopic endometrium: A heterogeneous tissue with a complex disease JO - PROTEOMICS Y1 - 2007 SP - 130 EP - 142 VL - 7 IS - 1 UR - http://dx.doi.org/10.1002/pmic.200600469 ER - TY - JOUR A1 - Michael L. Nielsen A1 - Mikhail M. Savitski A1 - Roman A. Zubarev T1 - Extent of Modifications in Human Proteome Samples and Their Effect on Dynamic Range of Analysis in Shotgun Proteomics JO - Mol Cell Proteomics Y1 - 2006 SP - 2384 EP - 2391 VL - 5 IS - 12 UR - http://www.mcponline.org/cgi/content/abstract/5/12/2384?etoc ER - TY - JOUR A1 - Kinoshita Y A1 - Uo T A1 - Jayadev S A1 - Garden GA A1 - Conrads TP A1 - Veenstra TD A1 - Morrison RS T1 - Potential applications and limitations of proteomics in the study of neurological disease JO - Arch Neurol Y1 - 2006 SP - 1692 EP - 6 VL - 63 IS - 12 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17172608&dopt=Abstract ER - TY - JOUR A1 - Calus D A1 - Baele M A1 - Meyns T A1 - de Kruif A A1 - Butaye P A1 - Decostere A A1 - Haesebrouck F A1 - Maes D T1 - Protein variability among Mycoplasma hyopneumoniae isolates JO - Vet Microbiol Y1 - 2007 SP - 284 EP - 91 VL - 120 IS - 3-4 UR - http://dx.doi.org/10.1016/j.vetmic.2006.10.040 ER - TY - JOUR A1 - Balcerzak M A1 - Radisson J A1 - Azzar G A1 - Farlay D A1 - Boivin G A1 - Pikula S A1 - Buchet R T1 - A comparative analysis of strategies for isolation of matrix vesicles JO - Anal Biochem Y1 - 2007 SP - 176 EP - 82 VL - 361 IS - 2 UR - http://dx.doi.org/10.1016/j.ab.2006.10.001 ER - TY - JOUR A1 - Gonzalez-Cabrero J A1 - Pozo M A1 - Duran MC A1 - de Nicolas R A1 - Egido J A1 - Vivanco F T1 - The proteome of endothelial cells JO - Methods Mol Biol Y1 - 2006 SP - 181 EP - 98 VL - 357 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17172688&dopt=Abstract ER - TY - JOUR A1 - Xue-Ping Wu A1 - Yong-Sheng Cheng A1 - Jin-Yuan Liu T1 - Microwave-Enhanced Ink Staining for Fast and Sensitive Protein Quantification in Proteomic Studies JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2007 SP - 387 EP - 391 VL - 6 IS - 1 UR - http://dx.doi.org/10.1021/pr0602848 ER - TY - JOUR A1 - Sarah Trimpin and Max L. Deinzer T1 - Solvent-Free MALDI-MS for the Analysis of a Membrane Protein via the Mini Ball Mill Approach: Case Study of Bacteriorhodopsin JO - ANALYTICAL CHEMISTRY Y1 - 2007 SP - 71 EP - 78 VL - 79 IS - 1 UR - http://dx.doi.org/10.1021/ac0607919 ER - TY - JOUR A1 - Stephen J. Hattan and Kenneth C. Parker T1 - Methodology Utilizing MS Signal Intensity and LC Retention Time for Quantitative Analysis and Precursor Ion Selection in Proteomic LC-MALDI Analyses JO - ANALYTICAL CHEMISTRY Y1 - 2006 SP - 7986 EP - 7996 VL - 78 IS - 23 UR - http://dx.doi.org/10.1021/ac0610513 ER - TY - JOUR A1 - Kane LA A1 - Neverova I A1 - Van Eyk JE T1 - Subfractionation of heart tissue: the "in sequence" myofilament protein extraction of myocardial tissue JO - Methods Mol Biol Y1 - 2006 SP - 87 EP - 90 VL - 357 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17172681&dopt=Abstract ER - TY - JOUR A1 - Yang Z A1 - Attygalle AB T1 - LC/MS characterization of undesired products formed during iodoacetamide derivatization of sulfhydryl groups of peptides JO - J Mass Spectrom Y1 - 2007 SP - 233 EP - 43 VL - 42 IS - 2 UR - http://dx.doi.org/10.1002/jms.1157 ER - TY - JOUR A1 - Lijun Zhang A1 - Xi'e Wang A1 - Xia Peng A1 - Yingjuan Wei A1 - Rui Cao A1 - Zhen Liu A1 - Jixian Xiong A1 - Xingfeng Ying A1 - Ping Chen A1 - Songping Liang T1 - Immunoaffinity Purification of Plasma Membrane with Secondary Antibody Superparamagnetic Beads for Proteomic Analysis JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2007 SP - 34 EP - 43 VL - 6 IS - 1 UR - http://dx.doi.org/10.1021/pr060069r ER - TY - JOUR A1 - [No authors listed] T1 - Cellular proteomics and systems biology JO - Cell Res Y1 - 2006 SP - S107 EP - 22 VL - 16 IS - Suppl 1 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17195025&dopt=Abstract ER - TY - JOUR A1 - Sheng-qing Li A1 - Jun Yun A1 - Fu-bo Xue A1 - Chang-qing Bai A1 - Shu-guang Yang A1 - Hai-ping Que A1 - Xin Zhao A1 - Zhe Wu A1 - Yu Wang A1 - Shao-jun Liu T1 - Comparative Proteome Analysis of Serum from Acute Pulmonary Embolism Rat Model for Biomarker Discovery JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2007 SP - 150 EP - 159 VL - 6 IS - 1 UR - http://dx.doi.org/10.1021/pr0603102 ER - TY - JOUR A1 - Simpson DM A1 - Mobasheri A A1 - Haywood S A1 - Beynon RJ T1 - A proteomics study of the response of North Ronaldsay sheep to copper challenge JO - Y1 - SP - EP - VL - IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17192175&dopt=Abstract ER - TY - JOUR A1 - Elisabeth Feuk-Lagerstedt A1 - Charlotta Movitz A1 - Sara Pellmé A1 - Claes Dahlgren A1 - Anna Karlsson T1 - Lipid raft proteome of the human neutrophil azurophil granule JO - PROTEOMICS Y1 - 2007 SP - 194 EP - 205 VL - 7 IS - 2 UR - http://dx.doi.org/10.1002/pmic.200600482 ER - TY - JOUR A1 - Serna-Sanz A A1 - Rairdan G A1 - Peck SC T1 - Preparative denaturing isoelectric focusing for enhancing sensitivity of proteomic studies JO - Methods Mol Biol Y1 - 2006 SP - 99 EP - 104 VL - 354 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17172748&dopt=Abstract ER - TY - JOUR A1 - Tan WH A1 - Takeuchi S T1 - A trap-and-release integrated microfluidic system for dynamic microarray applications JO - Proc Natl Acad Sci U S A Y1 - 2007 SP - 1146 EP - 51 VL - 104 IS - 4 UR - http://dx.doi.org/10.1073/pnas.0606625104 ER - TY - JOUR A1 - Juan J. Calvete A1 - Cezary Marcinkiewicz A1 - Libia Sanz T1 - Snake Venomics of Bitis gabonica gabonica. Protein Family Composition, Subunit Organization of Venom Toxins, and Characterization of Dimeric Disintegrins Bitisgabonin-1 and Bitisgabonin-2 JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2007 SP - 326 EP - 336 VL - 6 IS - 1 UR - http://dx.doi.org/10.1021/pr060494k ER - TY - JOUR A1 - Johri AK A1 - Margarit I A1 - Broenstrup M A1 - Brettoni C A1 - Hua L A1 - Gygi SP A1 - Telford J A1 - Grandi G A1 - Paoletti LC T1 - Transcriptional and Proteomic Profiles of Group B Streptococcus Type V Reveal Potential Adherence Proteins Associated with High-Level Invasion JO - Infect Immun Y1 - 2007 SP - 1473 EP - 83 VL - 75 IS - 3 UR - http://dx.doi.org/10.1128/IAI.00638-06 ER - TY - JOUR A1 - Thomas DP A1 - Pitarch A A1 - Monteoliva L A1 - Gil C A1 - Lopez-Ribot JL T1 - Proteomics to Study Candida albicans Biology and Pathogenicity JO - Infect Disord Drug Targets Y1 - 2006 SP - 335 EP - 41 VL - 6 IS - 4 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17168799&dopt=Abstract ER - TY - JOUR A1 - Sun Y A1 - Yi H A1 - Zhang PF A1 - Li MY A1 - Li C A1 - Li F A1 - Peng F A1 - Feng XP A1 - Yang YX A1 - Yang F A1 - Xiao ZQ A1 - Chen ZC T1 - Identification of differential proteins in nasopharyngeal carcinoma cells with p53 silence by proteome analysis JO - FEBS Lett Y1 - 2007 SP - 131 EP - 9 VL - 581 IS - 1 UR - http://dx.doi.org/10.1016/j.febslet.2006.12.008 ER - TY - JOUR A1 - Karlheinz Mann A1 - Jesper V. Olsen A1 - Boris Ma?ek A1 - Florian Gnad A1 - Matthias Mann T1 - Phosphoproteins of the chicken eggshell calcified layer JO - PROTEOMICS Y1 - 2007 SP - 106 EP - 115 VL - 7 IS - 1 UR - http://dx.doi.org/10.1002/pmic.200600635 ER - TY - JOUR A1 - Jennifer A. Siepen A1 - Emma-Jayne Keevil A1 - David Knight A1 - Simon J. Hubbard T1 - Prediction of Missed Cleavage Sites in Tryptic Peptides Aids Protein Identification in Proteomics JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2007 SP - 399 EP - 408 VL - 6 IS - 1 UR - http://dx.doi.org/10.1021/pr060507u ER - TY - JOUR A1 - Andreas O. Weinzierl A1 - Claudia Lemmel A1 - Oliver Schoor A1 - Margret Muller A1 - Tobias Kruger A1 - Dorothee Wernet A1 - Jorg Hennenlotter A1 - Arnulf Stenzl A1 - Karin Klingel A1 - Hans-Georg Rammensee A1 - Stefan Stevanovic T1 - Distorted Relation between mRNA Copy Number and Corresponding Major Histocompatibility Complex Ligand Density on the Cell Surface JO - Mol Cell Proteomics Y1 - 2007 SP - 102 EP - 113 VL - 6 IS - 1 UR - http://www.mcponline.org/cgi/content/abstract/6/1/102?etoc ER - TY - JOUR A1 - Orchard S A1 - Jones P A1 - Taylor C A1 - Zhu W A1 - Julian RK A1 - Hermjakob H A1 - Apweiler R T1 - Proteomic data exchange and storage: the need for common standards and public repositories JO - Methods Mol Biol Y1 - 2006 SP - 261 EP - 70 VL - 367 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17185781&dopt=Abstract ER - TY - JOUR A1 - Ya Jin A1 - Takashi Manabe T1 - Alkaline extraction of human plasma proteins from nondenaturing micro-2-D gels for protein/polypeptide mass measurement and peptide mass fingerprinting using MALDI-TOF MS JO - ELECTROPHORESIS Y1 - 2007 SP - 449 EP - 459 VL - 28 IS - 3 UR - http://dx.doi.org/10.1002/elps.200600409 ER - TY - JOUR A1 - Maruyama R A1 - Singson A T1 - Taking care of Dad's DNA JO - Y1 - SP - EP - VL - IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17147771&dopt=Abstract ER - TY - JOUR A1 - Sun J A1 - Lynn BC T1 - Development of a MALDI-TOF-MS Method to Identify and Quantify Butyrylcholinesterase Inhibition Resulting from Exposure to Organophosphate and Carbamate Pesticides JO - J Am Soc Mass Spectrom Y1 - 2007 SP - 698 EP - 706 VL - 18 IS - 4 UR - http://dx.doi.org/10.1016/j.jasms.2006.11.009 ER - TY - JOUR A1 - Kleffmann T A1 - von Zychlinski A A1 - Russenberger D A1 - Hirsch-Hoffmann M A1 - Gehrig P A1 - Gruissem W A1 - Baginsky S T1 - Proteome Dynamics during Plastid Differentiation in Rice (Oryza sativa L.) JO - Plant Physiol Y1 - 2007 SP - 912 EP - 23 VL - 143 IS - 2 UR - http://dx.doi.org/10.1104/pp.106.090738 ER - TY - JOUR A1 - Chung JW A1 - Speert DP T1 - Proteomic identification and characterization of bacterial factors associated with Burkholderia cenocepacia survival in a murine host JO - Microbiology Y1 - 2007 SP - 206 EP - 14 VL - 153 IS - Pt 1 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17185549&dopt=Abstract ER - TY - JOUR A1 - Solenne Chardonnet A1 - Paulette Decottignies A1 - Laurence Amar A1 - Jean-Pierre Le Caer A1 - Sabrina Davis A1 - Serge Laroche A1 - Pierre Le Maréchal T1 - New mortalin and histidyl tRNA synthetase isoforms point out a pitfall in proteomic analysis of Egr1 genetically modified mice JO - PROTEOMICS Y1 - 2007 SP - 289 EP - 298 VL - 7 IS - 2 UR - http://dx.doi.org/10.1002/pmic.200600513 ER - TY - JOUR A1 - Dupont A A1 - Pinet F T1 - The proteome and secretome of human arterial smooth muscle cell JO - Methods Mol Biol Y1 - 2006 SP - 225 EP - 34 VL - 357 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17172691&dopt=Abstract ER - TY - JOUR A1 - John W. Kehoe A1 - Nileena Velappan A1 - Monica Walbolt A1 - Jytte Rasmussen A1 - DaveKing A1 - Jianlong Lou A1 - Kristeene Knopp A1 - Peter Pavlik A1 - James D. Marks A1 - Carolyn R. Bertozzi A1 - Andrew R. M. Bradbury T1 - Using Phage Display to Select Antibodies Recognizing Post-translational Modifications Independently of Sequence Context JO - Mol Cell Proteomics Y1 - 2006 SP - 2350 EP - 2363 VL - 5 IS - 12 UR - http://www.mcponline.org/cgi/content/abstract/5/12/2350?etoc ER - TY - JOUR A1 - Garden P A1 - Alm R T1 - Proteomic data exchange and storage: using proteios JO - Methods Mol Biol Y1 - 2006 SP - 241 EP - 60 VL - 367 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17185780&dopt=Abstract ER - TY - JOUR A1 - Guda P A1 - Subramaniam S A1 - Guda C T1 - Mitoproteome: human heart mitochondrial protein sequence database JO - Methods Mol Biol Y1 - 2006 SP - 375 EP - 84 VL - 357 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17172703&dopt=Abstract ER - TY - JOUR A1 - Nina Hillen A1 - Stefan Stevanovic T1 - Contribution of mass spectrometry-based proteomics to immunology JO - Expert Review of Proteomics Y1 - 2006 SP - 653 EP - 664 VL - 3 IS - 6 UR - http://dx.doi.org/10.1586/14789450.3.6.653 ER -