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%A Sun S
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%A Zhang J
%A Zhang Z
%A Chen R
%A Bu D
%T An iterative algorithm to quantify the factors influencing peptide fragmentation for MS/MS spectrum
%0 Journal Article
%D 2006
%J Comput Syst Bioinformatics Conf
%P 353-60
%V 5
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%A Al-Shahib A
%A Breitling R
%A Gilbert DR
%T Predicting protein function by machine learning on amino acid sequences - A critical evaluation
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%A Mantini D
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%A Urbani A
%T LIMPIC: a computational method for the separation of protein MALDI-TOF-MS signals from noise
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%A Anderson TJ
%A Tchernyshyov I
%A Diez R
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%A Winslow RL
%T Discovering robust protein biomarkers for disease from relative expression reversals in 2-D DIGE data
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%J Proteomics
%P 1197-207
%V 7
%N 8
%U http://dx.doi.org/10.1002/pmic.200600374

%A Xu H
%A Freitas MA
%T A mass accuracy sensitive probability based scoring algorithm for database searching of tandem mass spectrometry data
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%A Chernorudskiy AL
%A Garcia A
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%A Shorina AS
%A Kondratieva EV
%A Gainullin MR
%T UbiProt: a database of ubiquitylated proteins
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%A Malmstrom L
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%A Bonneau R
%A Baker D
%T Superfamily Assignments for the Yeast Proteome through Integration of Structure Prediction with the Gene Ontology
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%T TOOLbox: Automatic validation of phosphopeptide identifications | Assessing human protein interaction maps | Faster database searches | ByOnic
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%D 2007
%J JOURNAL OF PROTEOME RESEARCH
%P 1238-1239
%V 6
%N 4
%U http://pubs.acs.org/subscribe/journals/jprobs/6/i04/html/0407toolbox.html

%A Aalt D. J. van Dijk
%A Simone Ciofi-Baffoni
%A Lucia Banci
%A Ivano Bertini
%A Rolf Boelens
%A Alexandre M. J. J. Bonvin
%T Modeling Protein-Protein Complexes Involved in the Cytochrome c Oxidase Copper-Delivery Pathway
%0 Journal Article
%D 2007
%J JOURNAL OF PROTEOME RESEARCH
%P 1530-1539
%V 6
%N 4
%U http://dx.doi.org/10.1021/pr060651f

%A Hu ZZ
%A Valencia JC
%A Huang H
%A Chi A
%A Shabanowitz J
%A Hearing VJ
%A Appella E
%A Wu C
%T Comparative Bioinformatics Analyses and Profiling of Lysosome-Related Organelle Proteomes
%0 Journal Article
%D 2007
%J Int J Mass Spectrom
%P 147-160
%V 259
%N 1-3
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17375895&dopt=Abstract

%A Kavoosi M
%A Creagh AL
%A Kilburn DG
%A Haynes CA
%T Strategy for selecting and characterizing linker peptides for CBM9-tagged fusion proteins expressed in E. coli
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%J Biotechnol Bioeng
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%8 Mar 29, 2007

%A Xu C
%A Ma B
%T Complexity and scoring function of MS/MS peptide de novo sequencing
%0 Journal Article
%D 2006
%J Comput Syst Bioinformatics Conf
%P 361-9
%V 5
%N 
%U http://www.lifesciencessociety.org/CSB2006/toc/361.2006.html

%A Jainab Khatun
%A Kevin Ramkissoon
%A Morgan C. Giddings
%T Fragmentation Characteristics of Collision-Induced Dissociation in MALDI TOF/TOF Mass Spectrometry
%0 Journal Article
%D 2007
%J ANALYTICAL CHEMISTRY
%P 3032-3040
%V 79
%N 8
%U http://dx.doi.org/10.1021/ac061455v

%A John Hawkins
%A Lynne Davis
%A Mikael Bodén
%T Predicting Nuclear Localization
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%J JOURNAL OF PROTEOME RESEARCH
%P 1402-1409
%V 6
%N 4
%U http://dx.doi.org/10.1021/pr060564n

%A Chen JY
%A Shen C
%A Yan Z
%A Brown DP
%A Wang M
%T A systems biology case study of ovarian cancer drug resistance
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%D 2006
%J Comput Syst Bioinformatics Conf
%P 389-98
%V 5
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%U http://www.lifesciencessociety.org/CSB2006/toc/389.2006.html

%A Suzek BE
%A Huang H
%A McGarvey P
%A Mazumder R
%A Wu CH
%T UniRef: Comprehensive and Non-Redundant UniProt Reference Clusters
%0 Journal Article
%D 2007
%J Bioinformatics
%P -
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%8 Mar 22, 2007

%A Janet Irungu
%A Eden P. Go
%A Dilusha S. Dalpathado
%A Heather Desaire
%T Simplification of Mass Spectral Analysis of Acidic Glycopeptides Using GlycoPep ID
%0 Journal Article
%D 2007
%J ANALYTICAL CHEMISTRY
%P 3065-3074
%V 79
%N 8
%U http://dx.doi.org/10.1021/ac062100e