TY - JOUR A1 - Yanqing Wang A1 - Jin Ouyang A1 - Willy RG Baeyens A1 - Joris R Delanghe T1 - Use of nanomaterials in capillary and microchip electrophoresis JO - Expert Review of Proteomics Y1 - 2007 SP - 287 EP - 298 VL - 4 IS - 2 UR - http://dx.doi.org/10.1586/14789450.4.2.287 ER - TY - JOUR A1 - Patrice Waridel A1 - Ari Frank A1 - Henrik Thomas A1 - Vineeth Surendranath A1 - Shamil Sunyaev A1 - Pavel Pevzner A1 - Andrej Shevchenko T1 - Sequence similarity-driven proteomics in organisms with unknown genomes by LC-MS/MS and automated de novo sequencing JO - PROTEOMICS Y1 - 2007 SP - 2318 EP - 2329 VL - 7 IS - 14 UR - http://dx.doi.org/10.1002/pmic.200700003 ER - TY - JOUR A1 - Jelle Van Leene A1 - Hilde Stals A1 - Dominique Eeckhout A1 - Geert Persiau A1 - Eveline Van De Slijke A1 - Gert Van Isterdael A1 - Annelies De Clercq A1 - Eric Bonnet A1 - Kris Laukens A1 - Noor Remmerie A1 - Kim Henderickx A1 - Thomas De Vijlder A1 - Azmi Abdelkrim A1 - Anne Pharazyn A1 - Harry Van Onckelen, T1 - A Tandem Affinity Purification-based Technology Platform to Study the Cell Cycle Interactome in Arabidopsis thaliana JO - Mol Cell Proteomics Y1 - 2007 SP - 1226 EP - 1238 VL - 6 IS - 7 UR - http://www.mcponline.org/cgi/content/abstract/6/7/1226?etoc ER - TY - JOUR A1 - Gannot G A1 - Tangrea MA A1 - Erickson HS A1 - Pinto PA A1 - Hewitt SM A1 - Chuaqui RF A1 - Gillespie JW A1 - Emmert-Buck MR T1 - Layered Peptide Array for Multiplex Immunohistochemistry JO - J Mol Diagn Y1 - 2007 SP - 297 EP - 304 VL - 9 IS - 3 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17591928&dopt=Abstract ER - TY - JOUR A1 - Carolina Bagnato A1 - Jaykumar Thumar A1 - Viveka Mayya A1 - Sun-Il Hwang A1 - Henry Zebroski A1 - Kevin P. Claffey A1 - Christian Haudenschild A1 - Jimmy K. Eng A1 - Deborah H. Lundgren A1 - David K. Han T1 - Proteomics Analysis of Human Coronary Atherosclerotic Plaque: A Feasibility Study of Direct Tissue Proteomics by Liquid Chromatography and Tandem Mass Spectrometry JO - Mol Cell Proteomics Y1 - 2007 SP - 1088 EP - 1102 VL - 6 IS - 6 UR - http://www.mcponline.org/cgi/content/abstract/6/6/1088?etoc ER - TY - JOUR A1 - Samuel A. M. Martin A1 - Bimal P. Mohanty A1 - Phillip Cash A1 - Dominic F. Houlihan A1 - Christopher J. Secombes T1 - Proteome analysis of the Atlantic salmon (Salmo salar) cell line SHK-1 following recombinant IFN-? stimulation JO - PROTEOMICS Y1 - 2007 SP - 2275 EP - 2286 VL - 7 IS - 13 UR - http://dx.doi.org/10.1002/pmic.200700020 ER - TY - JOUR A1 - Linding R A1 - Jensen LJ A1 - Ostheimer GJ A1 - van Vugt MA A1 - Jorgensen C A1 - Miron IM A1 - Diella F A1 - Colwill K A1 - Taylor L A1 - Elder K A1 - Metalnikov P A1 - Nguyen V A1 - Pasculescu A A1 - Jin J A1 - Park JG A1 - Samson LD A1 - Woodgett JR A1 - Russell RB A1 - Bork P A1 - Yaffe MB A1 - Pawson T T1 - Systematic Discovery of In Vivo Phosphorylation Networks JO - Cell Y1 - 2007/06/12 SP - EP - VL - IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17570479&dopt=Abstract ER - TY - JOUR A1 - Romina Pedreschi A1 - Els Vanstreels A1 - Sebastien Carpentier A1 - Maarten Hertog A1 - Jeroen Lammertyn A1 - Johan Robben A1 - Jean-Paul Noben A1 - Rony Swennen A1 - Jozef Vanderleyden A1 - Bart M. Nicolaï T1 - Proteomic analysis of core breakdown disorder in Conference pears (Pyrus communis L.) JO - PROTEOMICS Y1 - 2007 SP - 2083 EP - 2099 VL - 7 IS - 12 UR - http://dx.doi.org/10.1002/pmic.200600723 ER - TY - JOUR A1 - Andrade EC A1 - Krueger DD A1 - Nairn AC T1 - Recent advances in neuroproteomics JO - Curr Opin Mol Ther Y1 - 2007 SP - 270 EP - 81 VL - 9 IS - 3 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17608026&dopt=Abstract ER - TY - JOUR A1 - Janovska S A1 - Pavkova I A1 - Reichelova M A1 - Hubaleka M A1 - Stulik J A1 - Macela A T1 - Proteomic analysis of antibody response in a case of laboratory-acquired infection with Francisella tularensis subsp. tularensis JO - Folia Microbiol (Praha) Y1 - 2007 SP - 194 EP - 8 VL - 52 IS - 2 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17575919&dopt=Abstract ER - TY - JOUR A1 - Chien-Wen Hung A1 - Dieter Kübler A1 - Wolf D. Lehmann T1 - pI-based phosphopeptide enrichment combined with nanoESI-MS JO - ELECTROPHORESIS Y1 - 2007 SP - 2044 EP - 2052 VL - 28 IS - 12 UR - http://dx.doi.org/10.1002/elps.200600678 ER - TY - JOUR A1 - Rollin D A1 - Whistler T A1 - Vernon SD T1 - Laboratory methods to improve SELDI peak detection and quantitation JO - Y1 - SP - EP - VL - IS - UR - http://dx.doi.org/10.1186/1477-5956-5-9 ER - TY - JOUR A1 - Leroi V. DeSouza A1 - Jorg Grigull A1 - Shaun Ghanny A1 - Valerie Dube A1 - Alexander D. Romaschin A1 - Terence J. Colgan A1 - K. W. Michael Siu T1 - Endometrial Carcinoma Biomarker Discovery and Verification Using Differentially Tagged Clinical Samples with Multidimensional Liquid Chromatography and Tandem Mass Spectrometry JO - Mol Cell Proteomics Y1 - 2007 SP - 1170 EP - 1182 VL - 6 IS - 7 UR - http://www.mcponline.org/cgi/content/abstract/6/7/1170?etoc ER - TY - JOUR A1 - Boonen K A1 - Baggerman G A1 - Hertog WD A1 - Husson SJ A1 - Overbergh L A1 - Mathieu C A1 - Schoofs L T1 - Neuropeptides of the islets of Langerhans: A peptidomics study JO - Gen Comp Endocrinol Y1 - 2007 SP - 231 EP - 41 VL - 152 IS - 2-3 UR - http://dx.doi.org/10.1016/j.ygcen.2007.05.002 ER - TY - JOUR A1 - Webb-Robertson A1 - B.-J. M. A1 - Cannon A1 - W. R T1 - Current trends in computational inference from mass spectrometry-based proteomics JO - Brief Bioinform Y1 - 2007/06/20 SP - EP - VL - IS - UR - http://dx.doi.org/10.1093/bib/bbm023 ER - TY - JOUR A1 - Borneo J A1 - Munugalavadla V A1 - Sims EC A1 - Vemula S A1 - Orschell CM A1 - Yoder M A1 - Kapur R T1 - Src family kinase-mediated negative regulation of hematopoietic stem cell mobilization involves both intrinsic and microenvironmental factors JO - Exp Hematol Y1 - 2007 SP - 1026 EP - 37 VL - 35 IS - 7 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17588471&dopt=Abstract ER - TY - JOUR A1 - de Bont JM A1 - den Boer ML A1 - Kros JM A1 - Passier MM A1 - Reddingius RE A1 - Smitt PA A1 - Luider TM A1 - Pieters R T1 - Identification of Novel Biomarkers in Pediatric Primitive Neuroectodermal Tumors and Ependymomas by Proteome-Wide Analysis JO - J Neuropathol Exp Neurol Y1 - 2007 SP - 505 EP - 516 VL - 66 IS - 6 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17549010&dopt=Abstract ER - TY - JOUR A1 - Mhyre TR A1 - Loy R A1 - Tariot PN A1 - Profenno LA A1 - Maguire-Zeiss KA A1 - Zhang D A1 - Coleman PD A1 - Federoff HJ T1 - Proteomic analysis of peripheral leukocytes in Alzheimer's disease patients treated with divalproex sodium JO - Neurobiol Aging Y1 - 2007/05/21 SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.neurobiolaging.2007.04.004 ER - TY - JOUR A1 - Erach R. Talaty A1 - Chawalee Chueachavalit A1 - Sandra Osburn A1 - Michael J. Van Stipdonk T1 - Investigation of the neutral loss of a full amino acid mass during collision-induced dissociation of the b3+ ion derived from a model peptide containing a 4-aminobutyric acid residue JO - Rapid Communications in Mass Spectrometry Y1 - 2007 SP - 2529 EP - 2537 VL - 21 IS - 15 UR - http://dx.doi.org/10.1002/rcm.3120 ER - TY - JOUR A1 - Uchiumi T A1 - Shinkawa T A1 - Isobe T A1 - Okamoto T T1 - Identification of the major protein components of rice egg cells JO - J Plant Res Y1 - 2007 SP - 575 EP - 9 VL - 120 IS - 4 UR - http://dx.doi.org/10.1007/s10265-007-0095-y ER - TY - JOUR A1 - Calabrese V T1 - Highlight Commentary on "Redox proteomics analysis of oxidatively modified proteins in G93A-SOD1 transgenic mice-A model of familial amyotrophic lateral sclerosis" JO - Free Radic Biol Med Y1 - 2007 SP - 160 EP - 2 VL - 43 IS - 2 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17603925&dopt=Abstract ER - TY - JOUR A1 - Alexandre Dos Santos A1 - Valérie Thiers A1 - Sokhavuth Sar A1 - Nicolas Derian A1 - Noura Bensalem A1 - Funda Yilmaz A1 - Marie-Pierre Bralet A1 - Béatrice Ducot A1 - Christian Bréchot A1 - France Demaugre T1 - Contribution of laser microdissection-based technology to proteomic analysis in hepatocellular carcinoma developing on cirrhosis JO - PROTEOMICS - Clinical Applications Y1 - 2007 SP - 545 EP - 554 VL - 1 IS - 6 UR - http://dx.doi.org/10.1002/prca.200600474 ER - TY - JOUR A1 - Kam RK A1 - Poon TC A1 - Chan HL A1 - Wong N A1 - Hui AY A1 - Sung JJ T1 - High-Throughput Quantitative Profiling of Serum N-Glycome by MALDI-TOF Mass Spectrometry and N-Glycomic Fingerprint of Liver Fibrosis JO - Clin Chem Y1 - 2007 SP - 1254 EP - 1263 VL - 53 IS - 7 UR - http://dx.doi.org/10.1373/clinchem.2007.085563 ER - TY - JOUR A1 - Eugen Damoc A1 - Christopher S. Fraser A1 - Min Zhou A1 - Hortense Videler A1 - Greg L. Mayeur A1 - John W. B. Hershey A1 - Jennifer A. Doudna A1 - Carol V. Robinson A1 - Julie A. Leary T1 - Structural Characterization of the Human Eukaryotic Initiation Factor 3 Protein Complex by Mass Spectrometry JO - Mol Cell Proteomics Y1 - 2007 SP - 1135 EP - 1146 VL - 6 IS - 7 UR - http://www.mcponline.org/cgi/content/abstract/6/7/1135?etoc ER - TY - JOUR A1 - Efisio Puxeddu A1 - Federica Susta A1 - Pier Luigi Orvietani A1 - Davide Chiasserini A1 - Flavia Barbi A1 - Sonia Moretti A1 - Antonio Cavaliere A1 - Fausto Santeusanio A1 - Nicola Avenia A1 - Luciano Binaglia T1 - Identification of differentially expressed proteins in papillary thyroid carcinomas with V600E mutation of BRAF JO - PROTEOMICS - Clinical Applications Y1 - 2007 SP - 672 EP - 680 VL - 1 IS - 7 UR - http://dx.doi.org/10.1002/prca.200600776 ER - TY - JOUR A1 - Yetrib Hathout T1 - Approaches to the study of the cell secretome JO - Expert Review of Proteomics Y1 - 2007 SP - 239 EP - 248 VL - 4 IS - 2 UR - http://dx.doi.org/10.1586/14789450.4.2.239 ER - TY - JOUR A1 - Manfred Wuhrer T1 - Glycosylation profiling in clinical proteomics: heading for glycan biomarkers JO - Expert Review of Proteomics Y1 - 2007 SP - 135 EP - 136 VL - 4 IS - 2 UR - http://dx.doi.org/10.1586/14789450.4.2.135 ER - TY - JOUR A1 - Ji-eun Oh A1 - Angelika Freilinger A1 - Ellen Gelpi A1 - Arnold Pollak A1 - Markus Hengstschläger A1 - Gert Lubec T1 - Proteins involved in neuronal differentiation of neuroblastoma cell line N1E-115 JO - ELECTROPHORESIS Y1 - 2007 SP - 2009 EP - 2017 VL - 28 IS - 12 UR - http://dx.doi.org/10.1002/elps.200600833 ER - TY - JOUR A1 - Deng F A1 - Wang R A1 - Fang M A1 - Jiang Y A1 - Xu X A1 - Wang H A1 - Chen X A1 - Arif BM A1 - Guo L A1 - Wang H A1 - Hu Z T1 - Proteomics Analysis of HearNPV Identified Two New ODV associated Proteins, HA44 and HA100 JO - J Virol Y1 - 2007/06/20 SP - EP - VL - IS - UR - http://dx.doi.org/10.1128/JVI.00632-07 ER - TY - JOUR A1 - Hartler J A1 - Thallinger GG A1 - Stocker G A1 - Sturn A A1 - Burkard TR A1 - Korner E A1 - Rader R A1 - Schmidt A A1 - Mechtler K A1 - Trajanoski Z T1 - MASPECTRAS: a platform for management and analysis of proteomics LC-MS/MS data JO - Y1 - SP - EP - VL - IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17567892&dopt=Abstract ER - TY - JOUR A1 - Walz A A1 - Mujer C A1 - Connolly J A1 - Alefantis T A1 - Chafin R A1 - Dake C A1 - Whittington J A1 - Kumar S A1 - Khan A A1 - DelVecchio V T1 - Bacillus anthracis secretome time course under host-simulated conditions and identification of immunogenic proteins JO - Y1 - SP - EP - VL - IS - UR - http://dx.doi.org/10.1186/1477-5956-5-11 ER - TY - JOUR A1 - Scott MS A1 - Barton GJ T1 - Probabilistic prediction and ranking of human protein-protein interactions JO - Y1 - SP - EP - VL - IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17615067&dopt=Abstract ER - TY - JOUR A1 - Elaine R Mardis A1 - Andrew R Watson T1 - Advances in Genome Biology and Technology: 8th Annual Meeting JO - Expert Review of Proteomics Y1 - 2007 SP - 145 EP - 147 VL - 4 IS - 2 UR - http://dx.doi.org/10.1586/14789450.4.2.145 ER - TY - JOUR A1 - Dhingra V A1 - Li X A1 - Liu Y A1 - Fu ZF T1 - Proteomic profiling reveals that rabies virus infection results in differential expression of host proteins involved in ion homeostasis and synaptic physiology in the central nervous system JO - J Neurovirol Y1 - 2007 SP - 107 EP - 17 VL - 13 IS - 2 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17505979&dopt=Abstract ER - TY - JOUR A1 - Hochgrafe F A1 - Mostertz J A1 - Pother DC A1 - Becher D A1 - Helmann JD A1 - Hecker M T1 - S-cysteinylation is a general mechanism for thiol protection of Bacillus subtilis proteins after oxidative stress JO - J Biol Chem Y1 - 2007/07/4 SP - EP - VL - IS - UR - http://dx.doi.org/10.1074/jbc.C700105200 ER - TY - JOUR A1 - Berndt U A1 - Bartsch S A1 - Philipsen L A1 - Danese S A1 - Wiedenmann B A1 - Dignass AU A1 - Hammerle M A1 - Sturm A T1 - Proteomic analysis of the inflamed intestinal mucosa reveals distinctive immune response profiles in Crohn's disease and ulcerative colitis JO - J Immunol Y1 - 2007 SP - 295 EP - 304 VL - 179 IS - 1 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17579049&dopt=Abstract ER - TY - JOUR A1 - Kim DS T1 - Thyroid cancer: are molecular studies making any difference? JO - J Laryngol Otol Y1 - 2007/06/25 SP - EP - VL - IS - UR - http://dx.doi.org/10.1017/S0022215107009279 ER - TY - JOUR A1 - Svensson M A1 - Skold K A1 - Nilsson A A1 - Falth M A1 - Svenningsson P A1 - Andren PE T1 - Neuropeptidomics: expanding proteomics downwards JO - Biochem Soc Trans Y1 - 2007 SP - 588 EP - 93 VL - 35 IS - Pt 3 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17511658&dopt=Abstract ER - TY - JOUR A1 - Anand K. Ganesan A1 - Yoonjung Kho A1 - Sung Chan Kim A1 - Yue Chen A1 - Yingming Zhao A1 - Michael A. White T1 - Broad spectrum identification of SUMO substrates in melanoma cells JO - PROTEOMICS Y1 - 2007 SP - 2216 EP - 2221 VL - 7 IS - 13 UR - http://dx.doi.org/10.1002/pmic.200600971 ER - TY - JOUR A1 - Agnetti G A1 - Kane LA A1 - Guarnieri C A1 - Caldarera CM A1 - Van Eyk JE T1 - Proteomic technologies in the study of kinases: Novel tools for the investigation of PKC in the heart JO - Pharmacol Res Y1 - 2007 SP - 511 EP - 22 VL - 55 IS - 6 UR - http://dx.doi.org/10.1016/j.phrs.2007.04.012 ER - TY - JOUR A1 - Manuela Cuccurullo A1 - Gitta Schlosser A1 - Giuseppina Cacace A1 - Livia Malorni A1 - Gabriella Pocsfalvi T1 - Identification of phosphoproteins and determination of phosphorylation sites by zirconium dioxide enrichment and SELDI-MS/MS JO - Journal of Mass Spectrometry Y1 - 2007 SP - 1069 EP - 1078 VL - 42 IS - 8 UR - http://dx.doi.org/10.1002/jms.1238 ER - TY - JOUR A1 - Tang J A1 - Niu JW A1 - Xu DH A1 - Li ZX A1 - Li QF A1 - Chen JA T1 - Alteration of nuclear matrix-intermediate filament system and differential expression of nuclear matrix proteins during human hepatocarcinoma cell differentiation JO - World J Gastroenterol Y1 - 2007 SP - 2791 EP - 7 VL - 13 IS - 20 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17569113&dopt=Abstract ER - TY - JOUR A1 - Jun Li A1 - Huimin Ma A1 - Xiaochun Wang A1 - Shaoxiang Xiong A1 - Suying Dong A1 - Shujuan Wang T1 - Enhanced detection of thiol peptides by matrix-assisted laser desorption/ionization mass spectrometry after selective derivatization with a tailor-made quaternary ammonium tag containing maleimidyl group JO - Rapid Communications in Mass Spectrometry Y1 - 2007 SP - 2608 EP - 2612 VL - 21 IS - 16 UR - http://dx.doi.org/10.1002/rcm.3133 ER - TY - JOUR A1 - Francesco Giorgianni A1 - Yingxin Zhao A1 - Dominic M. Desiderio A1 - Sarka Beranova-Giorgianni T1 - Toward a global characterization of the phosphoproteome in prostate cancer cells: Identification of phosphoproteins in the LNCaP cell line JO - ELECTROPHORESIS Y1 - 2007 SP - 2027 EP - 2034 VL - 28 IS - 12 UR - http://dx.doi.org/10.1002/elps.200600782 ER - TY - JOUR A1 - Weitao Jia A1 - Huixia Wu A1 - Haojie Lu A1 - Na Li A1 - Yang Zhang A1 - Ruifang Cai A1 - Pengyuan Yang T1 - Rapid and automatic on-plate desalting protocol for MALDI-MS: Using imprinted hydrophobic polymer template JO - PROTEOMICS Y1 - 2007 SP - 2497 EP - 2506 VL - 7 IS - 15 UR - http://dx.doi.org/10.1002/pmic.200601029 ER - TY - JOUR A1 - Laville E A1 - Sayd T A1 - Terlouw C A1 - Chambon C A1 - Damon M A1 - Larzul C A1 - Leroy P A1 - Glenisson J A1 - Cherel P T1 - Comparison of Sarcoplasmic Proteomes between Two Groups of Pig Muscles Selected for Shear Force of Cooked Meat JO - J Agric Food Chem Y1 - 2007 SP - 5834 EP - 5841 VL - 55 IS - 14 UR - http://dx.doi.org/10.1021/jf070462x ER - TY - JOUR A1 - Michael Fedjaev A1 - Stephanie Trudel A1 - Natascha Tjon-A-Pan A1 - Amanda Parmar A1 - Barry I. Posner A1 - Emile Levy A1 - Ilya Nifant'ev A1 - Alexey V. Pshezhetsky T1 - Quantitative analysis of a proteome by N-terminal stable-isotope labelling of tryptic peptides JO - Rapid Communications in Mass Spectrometry Y1 - 2007 SP - 2671 EP - 2679 VL - 21 IS - 16 UR - http://dx.doi.org/10.1002/rcm.3128 ER - TY - JOUR A1 - Bassols J A1 - Bonet S A1 - Belghazi M A1 - Dacheux F A1 - Dacheux JL T1 - Proteomic study of the establishment of boar epididymal cell cultures JO - Theriogenology Y1 - 2007 SP - 76 EP - 86 VL - 68 IS - 1 UR - http://dx.doi.org/10.1016/j.theriogenology.2007.04.009 ER - TY - JOUR A1 - Manfred Heller A1 - Evelyn Schlappritzi A1 - Daniel Stalder A1 - Jean-Marc Nuoffer A1 - Andre Haeberli T1 - Compositional Protein Analysis of High Density Lipoproteins in Hypercholesterolemia by Shotgun LC-MS/MS and Probabilistic Peptide Scoring JO - Mol Cell Proteomics Y1 - 2007 SP - 1059 EP - 1072 VL - 6 IS - 6 UR - http://www.mcponline.org/cgi/content/abstract/6/6/1059?etoc ER - TY - JOUR A1 - Nelson C. Soares A1 - Rita Francisco A1 - Cândido P. Ricardo A1 - Phil A. Jackson T1 - Proteomics of ionically bound and soluble extracellular proteins in Medicago truncatula leaves JO - PROTEOMICS Y1 - 2007 SP - 2070 EP - 2082 VL - 7 IS - 12 UR - http://dx.doi.org/10.1002/pmic.200600953 ER - TY - JOUR A1 - Minic Z A1 - Jamet E A1 - Negroni L A1 - Arsene der Garabedian P A1 - Zivy M A1 - Jouanin L T1 - A sub-proteome of Arabidopsis thaliana mature stems trapped on Concanavalin A is enriched in cell wall glycoside hydrolases JO - J Exp Bot Y1 - 2007/05/26 SP - EP - VL - IS - UR - http://dx.doi.org/10.1093/jxb/erm082 ER - TY - JOUR A1 - Yu-Fen Lin A1 - Chun-Yi Chen A1 - Mong-Hsun Tsai A1 - Ming-Shiang Wu A1 - Yu-Chun Wang A1 - Eric Y. Chuang A1 - Jaw-Town Lin A1 - Pan-Chyr Yang A1 - Lu-Ping Chow T1 - Duodenal Ulcer-related Antigens from Helicobacter pylori: Immunoproteome and Protein Microarray Approaches JO - Mol Cell Proteomics Y1 - 2007 SP - 1018 EP - 1026 VL - 6 IS - 6 UR - http://www.mcponline.org/cgi/content/abstract/6/6/1018?etoc ER - TY - JOUR A1 - Ambatipudi K A1 - Joss J A1 - Raftery M A1 - Deane E T1 - A proteomic approach to analysis of antimicrobial activity in marsupial pouch secretions JO - Dev Comp Immunol Y1 - 2007/06/4 SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.dci.2007.04.009 ER - TY - JOUR A1 - Russell M. Morphew A1 - Hazel A. Wright A1 - E. James LaCourse A1 - Debra J. Woods A1 - Peter M. Brophy T1 - Comparative Proteomics of Excretory-Secretory Proteins Released by the Liver Fluke Fasciola hepatica in Sheep Host Bile and during in Vitro Culture ex Host JO - Mol Cell Proteomics Y1 - 2007 SP - 963 EP - 972 VL - 6 IS - 6 UR - http://www.mcponline.org/cgi/content/abstract/6/6/963?etoc ER - TY - JOUR A1 - Papale M A1 - Pedicillo MC A1 - Thatcher BJ A1 - Di Paolo S A1 - Muzio LL A1 - Bufo P A1 - Rocchetti MT A1 - Centra M A1 - Ranieri E A1 - Gesualdo L T1 - Urine profiling by SELDI-TOF/MS: Monitoring of the critical steps in sample collection, handling and analysis JO - J Chromatogr B Analyt Technol Biomed Life Sci Y1 - 2007/06/12 SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.jchromb.2007.06.001 ER - TY - JOUR A1 - Vincent R. Gerbasi and Andrew J. Link T1 - The Myotonic Dystrophy Type 2 Protein ZNF9 Is Part of an ITAF Complex That Promotes Cap-independent Translation JO - Mol Cell Proteomics Y1 - 2007 SP - 1049 EP - 1058 VL - 6 IS - 6 UR - http://www.mcponline.org/cgi/content/abstract/6/6/1049?etoc ER - TY - JOUR A1 - Wang X A1 - Li X A1 - Li Y T1 - A modified Coomassie Brilliant Blue staining method at nanogram sensitivity compatible with proteomic analysis JO - Biotechnol Lett Y1 - 2007/06/12 SP - EP - VL - IS - UR - http://dx.doi.org/10.1007/s10529-007-9425-3 ER - TY - JOUR A1 - Liu X A1 - Valentine SJ A1 - Plasencia MD A1 - Trimpin S A1 - Naylor S A1 - Clemmer DE T1 - Mapping the Human Plasma Proteome by SCX-LC-IMS-MS JO - J Am Soc Mass Spectrom Y1 - 2007 SP - 1249 EP - 64 VL - 18 IS - 7 UR - http://dx.doi.org/10.1016/j.jasms.2007.04.012 ER - TY - JOUR A1 - Julie K. Freed A1 - Julia R. Smith A1 - Peigang Li A1 - Andrew S. Greene T1 - Isolation of signal transduction complexes using biotin and crosslinking methodologies JO - PROTEOMICS Y1 - 2007 SP - 2371 EP - 2374 VL - 7 IS - 14 UR - http://dx.doi.org/10.1002/pmic.200700219 ER - TY - JOUR A1 - S. Fabio Falsone A1 - Bernd Gesslbauer A1 - Angelika Rek A1 - Andreas J. Kungl T1 - A proteomic approach towards the Hsp90-dependent ubiquitinylated proteome JO - PROTEOMICS Y1 - 2007 SP - 2375 EP - 2383 VL - 7 IS - 14 UR - http://dx.doi.org/10.1002/pmic.200600996 ER - TY - JOUR A1 - Sun Q A1 - Liu Y A1 - Lu W A1 - Cheng G A1 - Zhou H A1 - Zhou X A1 - Wei L A1 - Dai Z A1 - Guo K A1 - Lu H T1 - Con A affinity glycoproteomics of normal human liver tissue JO - Sci China C Life Sci Y1 - 2007 SP - 403 EP - 11 VL - 50 IS - 3 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17609898&dopt=Abstract ER - TY - JOUR A1 - Belluco C A1 - Petricoin EF A1 - Mammano E A1 - Facchiano F A1 - Ross-Rucker S A1 - Nitti D A1 - Maggio CD A1 - Liu C A1 - Lise M A1 - Liotta LA A1 - Whiteley G T1 - Serum Proteomic Analysis Identifies a Highly Sensitive and Specific Discriminatory Pattern in Stage 1 Breast Cancer JO - Ann Surg Oncol Y1 - 2007/06/27 SP - EP - VL - IS - UR - http://dx.doi.org/10.1245/s10434-007-9354-3 ER - TY - JOUR A1 - Adam Odhiambo A1 - David H. Perlman A1 - Hua Huang A1 - Catherine E. Costello A1 - Harrison W. Farber A1 - Martin H. Steinberg A1 - Mark E. McComb A1 - Elizabeth S. Klings T1 - Identification of oxidative post-translational modification of serum albumin in patients with idiopathic pulmonary arterial hypertension and pulmonary hypertension of sickle cell anemia JO - Rapid Communications in Mass Spectrometry Y1 - 2007 SP - 2195 EP - 2203 VL - 21 IS - 14 UR - http://dx.doi.org/10.1002/rcm.3074 ER - TY - JOUR A1 - Wang HY T1 - Laser capture microdissection in comparative proteomic analysis of hepatocellular carcinoma JO - Methods Cell Biol Y1 - 2007 SP - 689 EP - 707 VL - 82 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17586277&dopt=Abstract ER - TY - JOUR A1 - Sudha R A1 - Kawachi N A1 - Du P A1 - Nieves E A1 - Belbin TJ A1 - Negassa A A1 - Angeletti RH A1 - Prystowsky MB T1 - Global proteomic analysis distinguishes biologic differences in head and neck squamous carcinoma JO - Lab Invest Y1 - 2007 SP - 755 EP - 66 VL - 87 IS - 8 UR - http://dx.doi.org/10.1038/labinvest.3700598 ER - TY - JOUR A1 - Gilbert S. 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Singh A1 - Shveta Gupta T1 - Analysis of recombinant human erythropoietin and darbepoietin in spiked plasma JO - PROTEOMICS - Clinical Applications Y1 - 2007 SP - 626 EP - 639 VL - 1 IS - 7 UR - http://dx.doi.org/10.1002/prca.200600972 ER - TY - JOUR A1 - Ming Chen A1 - Wantao Ying A1 - Yanping Song A1 - Xin Liu A1 - Bing Yang A1 - Songfeng Wu A1 - Ying Jiang A1 - Yun Cai A1 - Fuchu He A1 - Xiaohong Qian T1 - Analysis of human liver proteome using replicate shotgun strategy JO - PROTEOMICS Y1 - 2007 SP - 2479 EP - 2488 VL - 7 IS - 14 UR - http://dx.doi.org/10.1002/pmic.200600338 ER - TY - JOUR A1 - Gabaldon C A1 - Gomez-Ros LV A1 - Nunez-Flores MJ A1 - Esteban-Carrasco A A1 - Barcelo AR T1 - Post-translational modifications of the basic peroxidase isoenzyme from Zinnia elegans JO - Plant Mol Biol Y1 - 2007/06/22 SP - EP - VL - IS - UR - http://dx.doi.org/10.1007/s11103-007-9197-0 ER - TY - JOUR A1 - Mingfu Wu A1 - Xiangyang Bai A1 - Gang Xu A1 - Juncheng Wei A1 - Tao Zhu A1 - Yongtao Zhang A1 - Qiong Li A1 - Ping Liu A1 - Anping Song A1 - Liangpin Zhao A1 - Chen Gang A1 - Zhiqiang Han A1 - Shixuan Wang A1 - Jianfeng Zhou A1 - Yunpin Lu A1 - Ding Ma T1 - Proteome analysis of human androgen-independent prostate cancer cell lines: Variable metastatic potentials correlated with vimentin expression JO - PROTEOMICS Y1 - 2007 SP - 1973 EP - 1983 VL - 7 IS - 12 UR - http://dx.doi.org/10.1002/pmic.200600643 ER - TY - JOUR A1 - Sara Strömberg A1 - Marcus Gry Björklund A1 - Caroline Asplund A1 - Anna Sköllermo A1 - Anja Persson A1 - Kenneth Wester A1 - Caroline Kampf A1 - Peter Nilsson A1 - Ann-Catrin Andersson A1 - Mathias Uhlen A1 - Juha Kononen A1 - Fredrik Ponten A1 - Anna Asplund T1 - A high-throughput strategy for protein profiling in cell microarrays using automated image analysis JO - PROTEOMICS Y1 - 2007 SP - 2142 EP - 2150 VL - 7 IS - 13 UR - http://dx.doi.org/10.1002/pmic.200700199 ER - TY - JOUR A1 - Antonio Rodríguez-García A1 - Carlos Barreiro A1 - Fernando Santos-Beneit A1 - Alberto Sola-Landa A1 - Juan F. Martín T1 - Genome-wide transcriptomic and proteomic analysis of the primary response to phosphate limitation in Streptomyces coelicolor M145 and in a ?phoP mutant JO - PROTEOMICS Y1 - 2007 SP - 2410 EP - 2429 VL - 7 IS - 14 UR - http://dx.doi.org/10.1002/pmic.200600883 ER - TY - JOUR A1 - Giuliano Elia T1 - Quantitative Proteomics by Mass Spectrometry - Methods in Molecular Biology Series. By Salvatore Sechi (Ed.) 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MacKenzie T1 - The Simpson-Golabi-Behmel syndrome causative Glypican-3, binds to and inhibits the dipeptidyl peptidase activity of CD26 JO - PROTEOMICS Y1 - 2007 SP - 2300 EP - 2310 VL - 7 IS - 13 UR - http://dx.doi.org/10.1002/pmic.200600654 ER - TY - JOUR A1 - Bandeira N T1 - Spectral networks: a new approach to de novo discovery of protein sequences and posttranslational modifications JO - Y1 - SP - EP - VL - IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17612289&dopt=Abstract ER - TY - JOUR A1 - Moritz Frommberger A1 - Petra Zürbig A1 - Justyna Jantos A1 - Thomas Krahn A1 - Harald Mischak A1 - Andreas Pich A1 - Ingo Just A1 - Philippe Schmitt-Kopplin A1 - Eric Schiffer T1 - Peptidomic analysis of rat urine using capillary electrophoresis coupled to mass spectrometry JO - PROTEOMICS - Clinical Applications Y1 - 2007 SP - 650 EP - 660 VL - 1 IS - 7 UR - http://dx.doi.org/10.1002/prca.200700195 ER - TY - JOUR A1 - Fanous A A1 - Weiland F A1 - Luck C A1 - Gorg A A1 - Friess A A1 - Parlar H T1 - A proteome analysis of Corynebacterium glutamicum after exposure to the herbicide 2,4-dichlorophenoxy acetic acid (2,4-D) JO - Chemosphere Y1 - 2007/06/11 SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.chemosphere.2007.04.075 ER - TY - JOUR A1 - Anne-Kristin Fentz A1 - Monika Spörl A1 - Jörg Spangenberg A1 - Heinz Joachim List A1 - Carsten Zornig A1 - Arnulf Dörner A1 - Peter Layer A1 - Hartmut Juhl A1 - Kerstin A. 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Bradshaw and Alma L. Burlingame T1 - Welcome, HUPO JO - Y1 - SP - EP - VL - IS - UR - http://www.mcponline.org/cgi/content/full/6/6/951?etoc ER - TY - JOUR A1 - Din S A1 - Lennon AM A1 - Arnott ID A1 - Hupp T A1 - Satsangi J T1 - Technology insight: the application of proteomics in gastrointestinal disease JO - Nat Clin Pract Gastroenterol Hepatol Y1 - 2007 SP - 372 EP - 85 VL - 4 IS - 7 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17607293&dopt=Abstract ER - TY - JOUR A1 - Catherine S. Lane A1 - Yuqin Wang A1 - Richard Betts A1 - William J. Griffiths A1 - Laurence H. Patterson T1 - Comparative Cytochrome P450 Proteomics in the Livers of Immunodeficient Mice Using 18O Stable Isotope Labeling JO - Mol Cell Proteomics Y1 - 2007 SP - 953 EP - 962 VL - 6 IS - 6 UR - http://www.mcponline.org/cgi/content/abstract/6/6/953?etoc ER - TY - JOUR A1 - Alexander-Kaufman K A1 - Harper C A1 - Wilce P A1 - Matsumoto I T1 - Cerebellar Vermis Proteome of Chronic Alcoholic Individuals JO - Alcohol Clin Exp Res Y1 - 2007 SP - 1286 EP - 96 VL - 31 IS - 8 UR - http://dx.doi.org/10.1111/j.1530-0277.2007.00437.x ER - TY - JOUR A1 - Lars Wöhlbrand A1 - Birte Kallerhoff A1 - Daniela Lange A1 - Peter Hufnagel A1 - Jürgen Thiermann A1 - Richard Reinhardt A1 - Ralf Rabus T1 - Functional proteomic view of metabolic regulation in ?Aromatoleum aromaticum? strain EbN1 JO - PROTEOMICS Y1 - 2007 SP - 2222 EP - 2239 VL - 7 IS - 13 UR - http://dx.doi.org/10.1002/pmic.200600987 ER - TY - JOUR A1 - Zhang C A1 - Zhu F A1 - Wei J A1 - Zheng S A1 - Li L T1 - A proteomic analysis of allograft rejection in rats after liver transplantation JO - Sci China C Life Sci Y1 - 2007 SP - 312 EP - 9 VL - 50 IS - 3 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17609887&dopt=Abstract ER - TY - JOUR A1 - Guo QC A1 - Shen JN A1 - Jin S A1 - Wang J A1 - Huang G A1 - Zhang LJ A1 - Huang G A1 - Yin JQ A1 - Zou CY A1 - Li MT T1 - Comparative proteomic analysis of human osteosarcoma and SV40-immortalized normal osteoblastic cell lines JO - Acta Pharmacol Sin Y1 - 2007 SP - 850 EP - 8 VL - 28 IS - 6 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17506944&dopt=Abstract ER - TY - JOUR A1 - Akihiro Ito A1 - Taka-aki Okamura A1 - Hitoshi Yamamoto A1 - Norikazu Ueyama A1 - Minoru Yamaguchi A1 - Hiroki Kuyama A1 - Eiji Ando A1 - Susumu Tsunasawa A1 - Kojiro Ake A1 - Ryoji Masui A1 - Seiki Kuramitsu A1 - Takashi Nakazawa A1 - Shigemi Norioka T1 - Simultaneous detection of N-terminal fragment ions in a protein mixture using a ruthenium(II) complex JO - Rapid Communications in Mass Spectrometry Y1 - 2007 SP - 2647 EP - 2653 VL - 21 IS - 16 UR - http://dx.doi.org/10.1002/rcm.3126 ER - TY - JOUR A1 - Angel P. 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Skibinski T1 - Evolution of 2-DE protein patterns in a mussel hybrid zone JO - PROTEOMICS Y1 - 2007 SP - 2111 EP - 2120 VL - 7 IS - 12 UR - http://dx.doi.org/10.1002/pmic.200600954 ER - TY - JOUR A1 - Martins D A1 - de Oliveira BM A1 - Dos Santos Farias A A1 - Horiuchi RS A1 - Domingues CC A1 - Paula ED A1 - Marangoni S A1 - Gattaz WF A1 - Dias-Neto E A1 - Novello JC T1 - The use of ASB-14 in combination with CHAPS is the best for solubilization of human brain proteins for two-dimensional gel electrophoresis JO - Brief Funct Genomic Proteomic Y1 - 2007/06/7 SP - EP - VL - IS - UR - http://dx.doi.org/10.1093/bfgp/elm009 ER - TY - JOUR A1 - Han NL A1 - Wen J A1 - Lin Q A1 - Tan PL A1 - Liou YC A1 - Sheu FS T1 - Proteomics analysis of the expression of neurogranin in murine neuroblastoma (Neuro-2a) cells reveals its involvement for cell differentiation JO - Int J Biol Sci Y1 - 2007 SP - 263 EP - 73 VL - 3 IS - 5 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17505539&dopt=Abstract ER - TY - JOUR A1 - Michael D. Hoffman A1 - Jason C. Rogalski A1 - Matthew J. Sniatynski A1 - Jennifer Locke A1 - Juergen Kast T1 - A multiplexed post-translational modification monitoring approach on a matrix-assisted laser desorption/ionization time-of-flight/time-of-flight mass spectrometer JO - Rapid Communications in Mass Spectrometry Y1 - 2007 SP - 2147 EP - 2156 VL - 21 IS - 13 UR - http://dx.doi.org/10.1002/rcm.3075 ER - TY - JOUR A1 - Paul J. Weaver A1 - Alice M.-F. Laures A1 - Jean-Claude Wolff T1 - Investigation of the advanced functionalities of a hybrid quadrupole orthogonal acceleration time-of-flight mass spectrometer JO - Rapid Communications in Mass Spectrometry Y1 - 2007 SP - 2415 EP - 2421 VL - 21 IS - 15 UR - http://dx.doi.org/10.1002/rcm.3052 ER - TY - JOUR A1 - Alexey V. Pshezhetsky A1 - Michael Fedjaev A1 - Lyudmila Ashmarina A1 - Alexander Mazur A1 - Lorne Budman A1 - Daniel Sinnett A1 - Damian Labuda A1 - Jean-François Beaulieu A1 - Daniel Ménard A1 - Ilya Nifant'ev A1 - Émile Levy T1 - Subcellular proteomics of cell differentiation: Quantitative analysis of the plasma membrane proteome of Caco-2 cells JO - PROTEOMICS Y1 - 2007 SP - 2201 EP - 2215 VL - 7 IS - 13 UR - http://dx.doi.org/10.1002/pmic.200600956 ER - TY - JOUR A1 - Michael Hamacher A1 - Christian Stephan A1 - Martin Eisenacher A1 - Piotr Lewczuk A1 - Jens Wiltfang A1 - Lennart Martens A1 - Juan Antonio Vizcaíno A1 - Kyung-Hoon Kwon A1 - Jong Shin Yoo A1 - Young Mok Park A1 - Johannes Beckers A1 - Marion Horsch A1 - Martin Hrabé de Angelis A1 - Zang-Hee Cho A1 - Rolf Apwe T1 - High Performance Proteomics: 7th HUPO Brain Proteome Project Workshop March 7-9, 2007 Wellcome Trust Conference Centre, Hinxton, UK JO - PROTEOMICS Y1 - 2007 SP - 2490 EP - 2496 VL - 7 IS - 15 UR - http://dx.doi.org/10.1002/pmic.200700449 ER - TY - JOUR A1 - Maxwell KL A1 - Frappier L T1 - Viral proteomics JO - Microbiol Mol Biol Rev Y1 - 2007 SP - 398 EP - 411 VL - 71 IS - 2 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17554050&dopt=Abstract ER - TY - JOUR A1 - van Hellemond JJ A1 - van Balkom BW A1 - Tielens AG T1 - Schistosome biology and proteomics: Progress and challenges JO - Exp Parasitol Y1 - 2007/05/23 SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.exppara.2007.05.004 ER - TY - JOUR A1 - Joris J. 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Zhen A1 - Michael J. Berna A1 - Zhaoyan Jin A1 - Michael L. Pritt A1 - David E. Watson A1 - Bradley L. Ackermann A1 - John E. Hale T1 - Quantification of heart fatty acid binding protein as a biomarker for drug-induced cardiac and musculoskeletal necroses JO - PROTEOMICS - Clinical Applications Y1 - 2007 SP - 661 EP - 671 VL - 1 IS - 7 UR - http://dx.doi.org/10.1002/prca.200700006 ER - TY - JOUR A1 - Kiel M A1 - Josh P A1 - Jones A A1 - Windon R A1 - Hunt P A1 - Kongsuwan K T1 - Identification of immuno-reactive proteins from a sheep gastrointestinal nematode, Trichostrongylus colubriformis, using two-dimensional electrophoresis and mass spectrometry JO - Int J Parasitol Y1 - 2007/05/10 SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.ijpara.2007.04.016 ER - TY - JOUR A1 - Peter M. Kilby T1 - Mass spectrometry data analysis in proteomics, Edited by Rune Matthiesen, Humana Press: Totowa. 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Albar A1 - Vasiliki Lalioti A1 - Cai Lei A1 - Wanjin Hong A1 - Isabel Merida T1 - Proteomics Identification of Sorting Nexin 27 as a Diacylglycerol Kinase {zeta}-associated Protein: New Diacylglycerol Kinase Roles in Endocytic Recycling JO - Mol Cell Proteomics Y1 - 2007 SP - 1073 EP - 1087 VL - 6 IS - 6 UR - http://www.mcponline.org/cgi/content/abstract/6/6/1073?etoc ER - TY - JOUR A1 - He QY A1 - Zhu R A1 - Lei T A1 - Ng MY A1 - Luk JM A1 - Sham P A1 - Lau GK A1 - Chiu JF T1 - Toward the proteomic identification of biomarkers for the prediction of HBV related hepatocellular carcinoma JO - J Cell Biochem Y1 - 2007/06/7 SP - EP - VL - IS - UR - http://dx.doi.org/10.1002/jcb.21443 ER - TY - JOUR A1 - Estevez AG T1 - Good science shows the way Highlight Commentary on "Redox proteomics analysis of oxidatively modified proteins in G93A-SOD1 transgenic mice-A model of familial amyotrophic lateral sclerosis"() JO - Free Radic Biol Med Y1 - 2007 SP - 163 EP - 4 VL - 43 IS - 2 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17603926&dopt=Abstract ER - TY - JOUR A1 - Matt P A1 - von Orelli A A1 - Bernet F A1 - Grussenmeyer T A1 - Lefkovits I A1 - Zerkowski HR T1 - Proteomics of ascending aortic aneurysm with bicuspid or tricuspid aortic valve JO - Asian Cardiovasc Thorac Ann Y1 - 2007 SP - 185 EP - 90 VL - 15 IS - 3 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17540984&dopt=Abstract ER - TY - JOUR A1 - Peicheng Du A1 - Rajagopalan Sudha A1 - Michael B. Prystowsky A1 - Ruth Hogue Angeletti T1 - Data reduction of isotope-resolved LC-MS spectra JO - Bioinformatics Y1 - 2007 SP - 1394 EP - 1400 VL - 23 IS - 11 UR - http://bioinformatics.oxfordjournals.org/cgi/content/abstract/23/11/1394?etoc ER - TY - JOUR A1 - Tomasz Andrzej Paw?owski T1 - Proteomics of European beech (Fagus sylvatica L.) seed dormancy breaking: Influence of abscisic and gibberellic acids JO - PROTEOMICS Y1 - 2007 SP - 2246 EP - 2257 VL - 7 IS - 13 UR - http://dx.doi.org/10.1002/pmic.200600912 ER - TY - JOUR A1 - Yan Li A1 - Bo Yan A1 - Chunhui Deng A1 - Wenjia Yu A1 - Xiuqing Xu A1 - Pengyuan Yang A1 - Xiangmin Zhang T1 - Efficient on-chip proteolysis system based on functionalized magnetic silica microspheres JO - PROTEOMICS Y1 - 2007 SP - 2330 EP - 2339 VL - 7 IS - 14 UR - http://dx.doi.org/10.1002/pmic.200700112 ER - TY - JOUR A1 - Ningombam Sanjib Meitei A1 - Snigdha Banerjee T1 - Interpretation support for multistage MS: A mathematical method for theoretical generation of glycan fragments and calculation of their masses JO - PROTEOMICS Y1 - 2007 SP - 2530 EP - 2540 VL - 7 IS - 15 UR - http://dx.doi.org/10.1002/pmic.200600667 ER - TY - JOUR A1 - Hoopmann MR A1 - Finney GL A1 - Maccoss MJ T1 - High-Speed Data Reduction, Feature Detection, and MS/MS Spectrum Quality Assessment of Shotgun Proteomics Data Sets Using High-Resolution Mass Spectrometry JO - Anal Chem Y1 - 2007/06/21 SP - EP - VL - IS - UR - http://dx.doi.org/10.1021/ac0700833 ER - TY - JOUR A1 - Wei-Jen Chung A1 - Hung-Yu Shu A1 - Chi-Yu Lu A1 - Chiu-Yi Wu A1 - Yi-Hsiung Tseng A1 - Shih-Feng Tsai A1 - Chao-Hsiung Lin T1 - Qualitative and comparative proteomic analysis of Xanthomonas campestris pv. campestris 17 JO - PROTEOMICS Y1 - 2007 SP - 2047 EP - 2058 VL - 7 IS - 12 UR - http://dx.doi.org/10.1002/pmic.200600647 ER - TY - JOUR A1 - Islinger M A1 - Luers GH A1 - Li KW A1 - Loos M A1 - Volkl A T1 - Rat liver peroxisomes after fibrate treatment: A survey using quantitative mass spectrometry JO - J Biol Chem Y1 - 2007/05/22 SP - EP - VL - IS - UR - 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PROTEOMICS Y1 - 2007 SP - 2287 EP - 2299 VL - 7 IS - 13 UR - http://dx.doi.org/10.1002/pmic.200500665 ER - TY - JOUR A1 - Gingras AC A1 - Gstaiger M A1 - Raught B A1 - Aebersold R T1 - Analysis of protein complexes using mass spectrometry JO - Nat Rev Mol Cell Biol Y1 - 2007 SP - 645 EP - 654 VL - 8 IS - 8 UR - http://dx.doi.org/10.1038/nrm2208 ER - TY - JOUR A1 - Jun Adachi A1 - Chanchal Kumar A1 - Yanling Zhang A1 - Matthias Mann T1 - In-depth Analysis of the Adipocyte Proteome by Mass Spectrometry and Bioinformatics JO - Mol Cell Proteomics Y1 - 2007 SP - 1257 EP - 1273 VL - 6 IS - 7 UR - http://www.mcponline.org/cgi/content/abstract/6/7/1257?etoc ER - TY - JOUR A1 - Pollins AC A1 - Friedman DB A1 - Nanney LB T1 - Proteomic Investigation of Human Burn Wounds by 2D-Difference Gel Electrophoresis and Mass Spectrometry JO - J Surg Res Y1 - 2007/06/28 SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.jss.2007.01.001 ER - TY - JOUR A1 - Lewis JA A1 - Rao KM A1 - Castranova V A1 - Vallyathan V A1 - Dennis WE A1 - Knechtges PL T1 - Proteomic analysis of bronchoalveolar lavage fluid: effect of acute exposure to diesel exhaust particles in rats JO - Environ Health Perspect Y1 - 2007 SP - 756 EP - 63 VL - 115 IS - 5 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17520064&dopt=Abstract ER - TY - JOUR A1 - Hryniewicz-Jankowska A A1 - Choudhary PK A1 - Goodman SR T1 - Variation in the monocyte proteome JO - Exp Biol Med (Maywood) Y1 - 2007 SP - 967 EP - 76 VL - 232 IS - 7 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17609514&dopt=Abstract ER - TY - JOUR A1 - Kirkland PA A1 - Reuter CJ A1 - Maupin-Furlow JA T1 - Effect of proteasome inhibitor clasto-lactacystin-beta-lactone on the proteome of the haloarchaeon Haloferax volcanii JO - Microbiology Y1 - 2007 SP - 2271 EP - 80 VL - 153 IS - Pt 7 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17600071&dopt=Abstract ER - TY - JOUR A1 - Hanson SR A1 - Hsu TL A1 - Weerapana E A1 - Kishikawa K A1 - Simon GM A1 - Cravatt BF A1 - Wong CH T1 - Tailored Glycoproteomics and Glycan Site Mapping Using Saccharide-Selective Bioorthogonal Probes JO - J Am Chem Soc Y1 - 2007 SP - 7266 EP - 7 VL - 129 IS - 23 UR - http://dx.doi.org/10.1021/ja0724083 ER - TY - JOUR A1 - Zhi-Qiang Xiao A1 - Ying Chen A1 - Bin Yi A1 - Mao-Yu Li A1 - Peng-Fei Zhang A1 - Hong Yi A1 - Chao-Jun Duan A1 - Cui Li A1 - Jian-Ling Li A1 - Cen-E Tang A1 - Fang Yang A1 - Ge-Qin Zhu A1 - Zhu-Chu Chen T1 - Identification of nasopharyngeal carcinoma antigens that induce humoral immune response by proteomic analysis JO - PROTEOMICS - Clinical Applications Y1 - 2007 SP - 688 EP - 698 VL - 1 IS - 7 UR - http://dx.doi.org/10.1002/prca.200600561 ER - TY - JOUR A1 - Matsuda-Matsumoto H A1 - Iwazaki T A1 - Kashem MA A1 - Harper C A1 - Matsumoto I T1 - Differential protein expression profiles in the hippocampus of human alcoholics JO - Neurochem Int Y1 - 2007/04/8 SP - EP - 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Eyles A1 - Berkay Unal A1 - Margaret Gill Hartley A1 - Sarah L. Newstead A1 - Helen Flick-Smith A1 - Joann L. Prior A1 - Petra C. F. Oyston A1 - Arlo Randall A1 - Yunxiang Mu A1 - Siddiqua Hirst A1 - Douglas M. Molina A1 - D. Huw Davies A1 - Tim Milne A1 - Kate F. Griffin A1 - Pierre Baldi A1 - Rick W. Titb T1 - Immunodominant Francisella tularensis antigens identified using proteome microarray. ©Crown Copyright 2007 Dstl JO - PROTEOMICS Y1 - 2007 SP - 2172 EP - 2183 VL - 7 IS - 13 UR - http://dx.doi.org/10.1002/pmic.200600985 ER - TY - JOUR A1 - Zhibin Xu A1 - Xinwen Zhou A1 - Haojie Lu A1 - Nan Wu A1 - Hongbo Zhao A1 - Lineng Zhang A1 - Wen Zhang A1 - Yu Long Liang A1 - Liying Wang A1 - Yinkun Liu A1 - Pengyuan Yang A1 - Xiliang Zha T1 - Comparative glycoproteomics based on lectins affinity capture of N-linked glycoproteins from human Chang liver cells and MHCC97-H cells JO - PROTEOMICS Y1 - 2007 SP - 2358 EP - 2370 VL - 7 IS - 14 UR - http://dx.doi.org/10.1002/pmic.200600041 ER - TY - JOUR A1 - Wei Wang A1 - Quan-Jun Liu A1 - Hong Cui T1 - Rapid desalting and protein recovery with phenol after ammonium sulfate fractionation JO - ELECTROPHORESIS Y1 - 2007 SP - 2358 EP - 2360 VL - 28 IS - 14 UR - http://dx.doi.org/10.1002/elps.200600743 ER - TY - JOUR A1 - Bradley L Ackermann A1 - Michael J Berna T1 - Coupling immunoaffinity techniques with MS for quantitative analysis of low-abundance protein biomarkers JO - Expert Review of Proteomics Y1 - 2007 SP - 175 EP - 186 VL - 4 IS - 2 UR - http://dx.doi.org/10.1586/14789450.4.2.175 ER - TY - JOUR A1 - Junsuo S. Li A1 - Christopher J. Vavricka A1 - Bruce M. Christensen A1 - Jianyong Li T1 - Proteomic analysis of N-glycosylation in mosquito dopachrome conversion enzyme JO - PROTEOMICS Y1 - 2007 SP - 2557 EP - 2569 VL - 7 IS - 15 UR - http://dx.doi.org/10.1002/pmic.200601053 ER - TY - JOUR A1 - Rother M A1 - Oelgeschlager E A1 - W Metcalf W T1 - Genetic and proteomic analyses of CO utilization by Methanosarcina acetivorans JO - Arch Microbiol Y1 - 2007/06/7 SP - EP - VL - IS - UR - http://dx.doi.org/10.1007/s00203-007-0266-1 ER - TY - JOUR A1 - Tong A A1 - Zhang H A1 - Li Z A1 - Gou L A1 - Wang Z A1 - Wei H A1 - Tang M A1 - Liang S A1 - Chen L A1 - Huang C A1 - Wei Y T1 - Proteomic analysis of liver cancer cells treated with suberonylanilide hydroxamic acid JO - Cancer Chemother Pharmacol Y1 - 2007/06/26 SP - EP - VL - IS - UR - http://dx.doi.org/10.1007/s00280-007-0536-2 ER - TY - JOUR A1 - Machida K A1 - Thompson CM A1 - Dierck K A1 - Jablonowski K A1 - Karkkainen S A1 - Liu B A1 - Zhang H A1 - Nash PD A1 - Newman DK A1 - Nollau P A1 - Pawson T A1 - Renkema GH A1 - Saksela K A1 - Schiller MR A1 - Shin DG A1 - Mayer BJ T1 - High-Throughput Phosphotyrosine Profiling Using SH2 Domains JO - Mol Cell Y1 - 2007 SP - 899 EP - 915 VL - 26 IS - 6 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17588523&dopt=Abstract ER - TY - JOUR A1 - Kim YJ A1 - Zhan P A1 - Feild B A1 - Ruben SM A1 - He T T1 - Reproducibility Assessment of Relative Quantitation Strategies for LC-MS Based Proteomics JO - Anal Chem Y1 - 2007/06/20 SP - EP - VL - IS - UR - http://dx.doi.org/10.1021/ac070200u ER - TY - JOUR A1 - Vitorino R A1 - Ferreira R A1 - Neuparth M A1 - Guedes S A1 - Williams J A1 - Tomer KB A1 - Domingues PM A1 - Appell HJ A1 - Duarte JA A1 - Amado FM T1 - Subcellular proteomics of mice gastrocnemius and soleus muscles> JO - Anal Biochem Y1 - 2007 SP - 156 EP - 69 VL - 366 IS - 2 UR - http://dx.doi.org/10.1016/j.ab.2007.04.009 ER - TY - JOUR A1 - Posadas EM A1 - Kwitkowski V A1 - Kotz HL A1 - Espina V A1 - Minasian L A1 - Tchabo N A1 - Premkumar A A1 - Hussain MM A1 - Chang R A1 - Steinberg SM A1 - Kohn EC T1 - A prospective analysis of imatinib-induced c-kit modulation in ovarian cancer: a phase II clinical study with proteomic profiling JO - Cancer Y1 - 2007 SP - 309 EP - 17 VL - 110 IS - 2 UR - http://dx.doi.org/10.1002/cncr.22757 ER - TY - JOUR A1 - De Ceuninck F T1 - The birth and infancy of proteomic analysis in osteoarthritis research JO - Curr Opin Mol Ther Y1 - 2007 SP - 263 EP - 9 VL - 9 IS - 3 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17608025&dopt=Abstract ER - TY - JOUR A1 - Bobbie-Jo M. Webb-Robertson A1 - Elena S. Peterson A1 - Mudita Singhal A1 - Kyle R. Klicker A1 - Christopher S. Oehmen A1 - Joshua N. Adkins A1 - Susan L. Havre T1 - PQuad a visual analysis platform for proteomic data exploration of microbial organisms JO - Bioinformatics Y1 - 2007 SP - 1705 EP - 1707 VL - 23 IS - 13 UR - http://bioinformatics.oxfordjournals.org/cgi/content/abstract/23/13/1705?etoc ER - TY - JOUR A1 - Steve MM Sweet A1 - Helen J Cooper T1 - Electron capture dissociation in the analysis of protein phosphorylation JO - Expert Review of Proteomics Y1 - 2007 SP - 149 EP - 159 VL - 4 IS - 2 UR - http://dx.doi.org/10.1586/14789450.4.2.149 ER - TY - JOUR A1 - Miren J. Omaetxebarria A1 - Felix Elortza A1 - Eva Rodríguez-Suárez A1 - Kerman Aloria A1 - Jesus M. Arizmendi A1 - Ole N. Jensen A1 - Rune Matthiesen T1 - Computational approach for identification and characterization of GPI-anchored peptides in proteomics experiments JO - PROTEOMICS Y1 - 2007 SP - 1951 EP - 1960 VL - 7 IS - 12 UR - http://dx.doi.org/10.1002/pmic.200700068 ER - TY - JOUR A1 - Klinkert I A1 - McDonnell LA A1 - Luxembourg SL A1 - Maarten Altelaar AF A1 - Amstalden ER A1 - Piersma SR A1 - Heeren RM T1 - Tools and strategies for visualization of large image data sets in high-resolution imaging mass spectrometry JO - Y1 - SP - EP - VL - IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17552834&dopt=Abstract ER - TY - JOUR A1 - Husson SJ A1 - Janssen T A1 - Baggerman G A1 - Bogert B A1 - Kahn-Kirby AH A1 - Ashrafi K A1 - Schoofs L T1 - Impaired processing of FLP and NLP peptides in carboxypeptidase E (EGL-21)-deficient Caenorhabditis elegans as analyzed by mass spectrometry JO - J Neurochem Y1 - 2007 SP - 246 EP - 60 VL - 102 IS - 1 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17564681&dopt=Abstract ER - TY - JOUR A1 - Ruo-Pan Huang T1 - An array of possibilities in cancer research using cytokine antibody arrays JO - Expert Review of Proteomics Y1 - 2007 SP - 299 EP - 308 VL - 4 IS - 2 UR - http://dx.doi.org/10.1586/14789450.4.2.299 ER - TY - JOUR A1 - Boehm AM A1 - Puetz S A1 - Altenhofer D A1 - Sickmann A A1 - Falk M T1 - Precise protein quantification based on peptide quantification using iTRAQ JO - Y1 - SP - EP - VL - IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17584939&dopt=Abstract ER - TY - JOUR A1 - Smits P A1 - Smeitink JA A1 - van den Heuvel LP A1 - Huynen MA A1 - Ettema TJ T1 - Reconstructing the evolution of the mitochondrial ribosomal proteome JO - Nucleic Acids Res Y1 - 2007/06/29 SP - EP - VL - IS - UR - http://dx.doi.org/10.1093/nar/gkm441 ER - TY - JOUR A1 - Dalle-Donne I T1 - Familial amyotrophic lateral sclerosis (FALS): Emerging hints from redox proteomics. Highlight commentary on: "Redox proteomics analysis of oxidatively modified proteins in G93A-SOD1 transgenic mice-A model of familial amyotrophic lateral sclerosis&q JO - Free Radic Biol Med Y1 - 2007 SP - 157 EP - 9 VL - 43 IS - 2 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17603924&dopt=Abstract ER - TY - JOUR A1 - Sang Gu Kang A1 - Mohammad Nurul Matin A1 - Hanhong Bae A1 - Savithiry Natarajan T1 - Proteome analysis and characterization of phenotypes of lesion mimic mutant spotted leaf 6 in rice JO - PROTEOMICS Y1 - 2007 SP - 2447 EP - 2458 VL - 7 IS - 14 UR - http://dx.doi.org/10.1002/pmic.200600961 ER - TY - JOUR T1 - Meetings Diary: Proteomics - Clinical Applications 6/2007 JO - PROTEOMICS - Clinical Applications Y1 - 2007 SP - 622 EP - 624 VL - 1 IS - 6 UR - http://www.wiley-vch.de/vch/journals/2120/2120_meetings.pdf ER - TY - JOUR A1 - Chen YY A1 - Huang YF A1 - Khoo KH A1 - Meng TC T1 - Mass spectrometry-based analyses for identifying and characterizing S-nitrosylation of protein tyrosine phosphatases JO - Methods Y1 - 2007 SP - 243 EP - 249 VL - 42 IS - 3 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17532511&dopt=Abstract ER - TY - JOUR A1 - Connie R. Jimenez A1 - Zineb El Filali A1 - Jaco C. Knol A1 - Klaas Hoekman A1 - Frank A. E. Kruyt A1 - Giuseppe Giaccone A1 - August B. Smit A1 - Ka Wan Li T1 - Automated serum peptide profiling using novel magnetic C18 beads off-line coupled to MALDI-TOF-MS JO - PROTEOMICS - Clinical Applications Y1 - 2007 SP - 598 EP - 604 VL - 1 IS - 6 UR - http://dx.doi.org/10.1002/prca.200600483 ER - TY - JOUR A1 - Katz E A1 - Fon M A1 - Lee YJ A1 - Phinney BS A1 - Sadka A A1 - Blumwald E T1 - The citrus fruit proteome: insights into citrus fruit metabolism JO - Planta Y1 - 2007/05/31 SP - EP - VL - IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17541628&dopt=Abstract ER - TY - JOUR A1 - Chen CY A1 - Lee CM A1 - Hsu HC A1 - Yang CY A1 - Chow LP A1 - Lee YT T1 - Proteomic approach to study the effects of various oxidatively modified low-density lipoprotein on regulation of protein expression in human umbilical vein endothelial cell JO - Life Sci Y1 - 2007 SP - 2469 EP - 80 VL - 80 IS - 26 UR - http://dx.doi.org/10.1016/j.lfs.2007.04.007 ER - TY - JOUR A1 - [No authors listed] T1 - Proteins and proteomics/chips and mass spectrometry JO - Clin Chem Lab Med Y1 - 2007 SP - S441 EP - S444 VL - 45 IS - s1 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17508889&dopt=Abstract ER - TY - JOUR A1 - Magagnin MG A1 - Sergeant K A1 - van den Beucken T A1 - Rouschop KM A1 - Jutten B A1 - Seigneuric R A1 - Lambin P A1 - Devreese B A1 - Koritzinsky M A1 - Wouters BG T1 - Proteomic analysis of gene expression following hypoxia and reoxygenation reveals proteins involved in the recovery from endoplasmic reticulum and oxidative stress> JO - Radiother Oncol Y1 - 2007 SP - 340 EP - 5 VL - 83 IS - 3 UR - http://dx.doi.org/10.1016/j.radonc.2007.04.027 ER - TY - JOUR A1 - Chin AC A1 - Fong WJ A1 - Goh LT A1 - Philp R A1 - Oh SK A1 - Choo AB T1 - Identification of proteins from feeder conditioned medium that support human embryonic stem cells JO - J Biotechnol Y1 - 2007 SP - 320 EP - 8 VL - 130 IS - 3 UR - http://dx.doi.org/10.1016/j.jbiotec.2007.04.013 ER - TY - JOUR A1 - André Schrattenholz A1 - Karlfried Groebe T1 - What does it need to be a biomarker? Relationships between resolution, differential quantification and statistical validation of protein surrogate biomarkers JO - ELECTROPHORESIS Y1 - 2007 SP - 1970 EP - 1979 VL - 28 IS - 12 UR - http://dx.doi.org/10.1002/elps.200600752 ER - TY - JOUR A1 - Sun ZL A1 - Zhu Y A1 - Wang FQ A1 - Chen R A1 - Peng T A1 - Fan ZN A1 - Xu ZK A1 - Miao Y T1 - Serum proteomic-based analysis of pancreatic carcinoma for the identification of potential cancer biomarkers JO - Biochim Biophys Acta Y1 - 2007 SP - 764 EP - 71 VL - 1774 IS - 6 UR - http://dx.doi.org/10.1016/j.bbapap.2007.04.001 ER - TY - JOUR A1 - Sultana R A1 - Boyd-Kimball D A1 - Cai J A1 - Pierce WM A1 - Klein JB A1 - Merchant M A1 - Butterfield DA T1 - Proteomics analysis of the Alzheimer's disease hippocampal proteome JO - J Alzheimers Dis Y1 - 2007 SP - 153 EP - 64 VL - 11 IS - 2 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17522440&dopt=Abstract ER - TY - JOUR A1 - Shaohui Hu A1 - Yu Li A1 - Guozhen Liu A1 - Qifeng Song A1 - Li Wang A1 - Yuning Han A1 - Yang Zhang A1 - Yali Song A1 - Xiying Yao A1 - Yong Tao A1 - Haipan Zeng A1 - Huanming Yang A1 - Jian Wang A1 - Heng Zhu A1 - Zhi-Nan Chen A1 - Lin Wu T1 - A protein chip approach for high-throughput antigen identification and characterization JO - PROTEOMICS Y1 - 2007 SP - 2151 EP - 2161 VL - 7 IS - 13 UR - http://dx.doi.org/10.1002/pmic.200600923 ER - TY - JOUR A1 - Bowman MJ A1 - Zaia J T1 - Tags for the Stable Isotopic Labeling of Carbohydrates and Quantitative Analysis by Mass Spectrometry JO - Anal Chem Y1 - 2007 SP - 5777 EP - 84 VL - 79 IS - 15 UR - http://dx.doi.org/10.1021/ac070581b ER - TY - JOUR A1 - Bonnekoh B A1 - Pommer AJ A1 - Bockelmann R A1 - Hofmeister H A1 - Philipsen L A1 - Gollnick H T1 - Topo-Proteomic in situ Analysis of Psoriatic Plaque under Efalizumab Treatment JO - Skin Pharmacol Physiol Y1 - 2007 SP - 237 EP - 252 VL - 20 IS - 5 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17587888&dopt=Abstract ER - TY - JOUR A1 - Víctor M. Díaz A1 - Angela Bachi A1 - Francesco Blasi T1 - Purification of the Prep1 interactome identifies novel pathways regulated by Prep1 JO - PROTEOMICS Y1 - 2007 SP - 2617 EP - 2623 VL - 7 IS - 15 UR - http://dx.doi.org/10.1002/pmic.200700197 ER - TY - JOUR A1 - Martino TA A1 - Tata N A1 - Bjarnason GA A1 - Straume M A1 - Sole MJ T1 - Diurnal Protein Expression in Blood Revealed by High Throughput Mass Spectrometry Proteomics, and Implications for Translational Medicine and Body-Time-Of-Day (BTOD) JO - Am J Physiol Regul Integr Comp Physiol Y1 - 2007/06/6 SP - EP - VL - IS - UR - http://dx.doi.org/10.1152/ajpregu.00183.2007 ER - TY - JOUR A1 - Shoshan SH A1 - Admon A T1 - Novel technologies for cancer biomarker discovery: Humoral proteomics JO - Cancer Biomark Y1 - 2007 SP - 141 EP - 52 VL - 3 IS - 3 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17611305&dopt=Abstract ER - TY - JOUR A1 - Takashi Suzuki A1 - Masaaki Ito A1 - Toru Ezure A1 - Masamitsu Shikata A1 - Eiji Ando A1 - Toshihiko Utsumi A1 - Susumu Tsunasawa A1 - Osamu Nishimura T1 - Protein prenylation in an insect cell-free protein synthesis system and identification of products by mass spectrometry JO - PROTEOMICS Y1 - 2007 SP - 1942 EP - 1950 VL - 7 IS - 12 UR - http://dx.doi.org/10.1002/pmic.200700237 ER - TY - JOUR A1 - Folsom JP A1 - Frank JF T1 - Proteomic analysis of a hypochlorous acid-tolerant Listeria monocytogenes cultural variant exhibiting enhanced biofilm production JO - J Food Prot Y1 - 2007 SP - 1129 EP - 36 VL - 70 IS - 5 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17536671&dopt=Abstract ER - TY - JOUR A1 - Hyun Ryoung Kim A1 - Karine Andrieux A1 - Claudine Delomenie A1 - Héléne Chacun A1 - Martine Appel A1 - Didier Desmaële A1 - Fréderic Taran A1 - Dominique Georgin A1 - Patrick Couvreur A1 - Myriam Taverna T1 - Analysis of plasma protein adsorption onto PEGylated nanoparticles by complementary methods: 2-DE, CE and Protein Lab-on-chip® system JO - ELECTROPHORESIS Y1 - 2007 SP - 2252 EP - 2261 VL - 28 IS - 13 UR - http://dx.doi.org/10.1002/elps.200600694 ER - TY - JOUR A1 - Grzegorz Sawicki A1 - Bodh I. Jugdutt T1 - Valsartan reverses post-translational modifications of the ?-subunit of ATP synthase during in vivo canine reperfused myocardial infarction JO - PROTEOMICS Y1 - 2007 SP - 2100 EP - 2110 VL - 7 IS - 12 UR - http://dx.doi.org/10.1002/pmic.200601022 ER - TY - JOUR A1 - Nomura F A1 - Tomonaga T A1 - Sogawa K A1 - Wu D A1 - Ohashi T T1 - Application of proteomic technologies to discover and identify biomarkers for excessive alcohol consumption: A review JO - J Chromatogr B Y1 - 2007 SP - 35 EP - 41 VL - 855 IS - 1 UR - http://dx.doi.org/10.1016/j.jchromb.2007.05.023 ER - TY - JOUR A1 - Kiraga J A1 - Mackiewicz P A1 - Mackiewicz D A1 - Kowalczuk M A1 - Biecek P A1 - Polak N A1 - Smolarczyk K A1 - Dudek MR A1 - Cebrat S T1 - The relationships between the isoelectric point and the length of proteins, taxonomy and ecology of organisms JO - Y1 - SP - EP - VL - IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17565672&dopt=Abstract ER - TY - JOUR A1 - Godfrey (Goff) J. Quin A1 - Alice C. L. Len A1 - Frank A. Billson A1 - Mark C. Gillies T1 - Proteome map of normal rat retina and comparison with the proteome of diabetic rat retina: New insight in the pathogenesis of diabetic retinopathy JO - PROTEOMICS Y1 - 2007 SP - 2636 EP - 2650 VL - 7 IS - 15 UR - http://dx.doi.org/10.1002/pmic.200600486 ER - TY - JOUR A1 - Nobuaki Takemori A1 - Naoka Komori A1 - James N. Thompson Jr. A1 - Masa-Toshi Yamamoto A1 - Hiroyuki Matsumoto T1 - Novel eye-specific calmodulin methylation characterized by protein mapping in Drosophila melanogaster JO - PROTEOMICS Y1 - 2007 SP - 2651 EP - 2658 VL - 7 IS - 15 UR - http://dx.doi.org/10.1002/pmic.200700343 ER - TY - JOUR A1 - Liu HC A1 - Hicks JA T1 - Using proteomics to understand avian systems biology and infectious disease JO - Poult Sci Y1 - 2007 SP - 1523 EP - 9 VL - 86 IS - 7 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17575203&dopt=Abstract ER - TY - JOUR A1 - Chen JY A1 - Yan Z A1 - Shen C A1 - Fitzpatrick DP A1 - Wang M T1 - A systems biology approach to the study of Cisplatin drug resistance in ovarian cancers JO - J Bioinform Comput Biol Y1 - 2007 SP - 383 EP - 405 VL - 5 IS - 2 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17589967&dopt=Abstract ER - TY - JOUR A1 - Dana A. N. Mustafa A1 - Peter C. Burgers A1 - Lennard J. Dekker A1 - Halima Charif A1 - Mark K. Titulaer A1 - Peter A. E. Sillevis Smitt A1 - Theo M. Luider A1 - Johan M. Kros T1 - Identification of Glioma Neovascularization-related Proteins by Using MALDI-FTMS and Nano-LC Fractionation to Microdissected Tumor Vessels JO - Mol Cell Proteomics Y1 - 2007 SP - 1147 EP - 1157 VL - 6 IS - 7 UR - http://www.mcponline.org/cgi/content/abstract/6/7/1147?etoc ER - TY - JOUR A1 - Moseley FL A1 - Bicknell KA A1 - Marber MS A1 - Brooks G T1 - The use of proteomics to identify novel therapeutic targets for the treatment of disease JO - J Pharm Pharmacol Y1 - 2007 SP - 609 EP - 28 VL - 59 IS - 5 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17524226&dopt=Abstract ER - TY - JOUR A1 - O'connell K A1 - Gannon J A1 - Doran P A1 - Ohlendieck K T1 - Proteomic profiling reveals a severely perturbed protein expression pattern in aged skeletal muscle JO - Int J Mol Med Y1 - 2007 SP - 145 EP - 53 VL - 20 IS - 2 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17611631&dopt=Abstract ER - TY - JOUR A1 - Ganesh SK A1 - Sharma Y A1 - Dayhoff J A1 - Fales HM A1 - Van Eyk J A1 - Kickler TS A1 - Billings EM A1 - Nabel EG T1 - Detection of venous thromboembolism by proteomic serum biomarkers JO - Y1 - SP - EP - VL - IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17579716&dopt=Abstract ER - TY - JOUR A1 - Beerelli Seshi T1 - Proteomics strategy based on liquid-phase IEF and 2-D DIGE: Application to bone marrow mesenchymal progenitor cells JO - PROTEOMICS Y1 - 2007 SP - 1984 EP - 1999 VL - 7 IS - 12 UR - http://dx.doi.org/10.1002/pmic.200600868 ER - TY - JOUR A1 - Nice EC A1 - Rothacker J A1 - Weinstock J A1 - Lim L A1 - Catimel B T1 - Use of multidimensional separation protocols for the purification of trace components in complex biological samples for proteomics analysis JO - J Chromatogr A Y1 - 2007/06/14 SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.chroma.2007.06.015 ER - TY - JOUR A1 - Juan Casado-Vela A1 - Edgar J. Ruiz A1 - Angel R. Nebreda A1 - J. Ignacio Casal T1 - A combination of neutral loss and targeted product ion scanning with two enzymatic digestions facilitates the comprehensive mapping of phosphorylation sites JO - PROTEOMICS Y1 - 2007 SP - 2522 EP - 2529 VL - 7 IS - 15 UR - http://dx.doi.org/10.1002/pmic.200700026 ER - TY - JOUR A1 - Yannick Brunner A1 - Yohann Coute A1 - Mariella Iezzi A1 - Michelangelo Foti A1 - Mitsonuri Fukuda A1 - Denis F. Hochstrasser A1 - Claes B. Wollheim A1 - Jean-Charles Sanchez T1 - Proteomics Analysis of Insulin Secretory Granules JO - Mol Cell Proteomics Y1 - 2007 SP - 1007 EP - 1017 VL - 6 IS - 6 UR - http://www.mcponline.org/cgi/content/abstract/6/6/1007?etoc ER - TY - JOUR A1 - Yamakawa K A1 - Yoshida K A1 - Nishikawa H A1 - Kato T A1 - Iwamoto T T1 - Comparative analysis of inter-individual variations in the seminal plasma proteome of fertile men with the identification of potential markers for azoospermia in infertile patients JO - J Androl Y1 - 2007/06/6 SP - EP - VL - IS - UR - http://dx.doi.org/10.2164/jandrol.107.002824 ER - TY - JOUR A1 - Tsao MS A1 - Liu G A1 - Shepherd FA T1 - Serum proteomic classifier for predicting response to epidermal growth factor receptor inhibitor therapy: have we built a better mousetrap? JO - J Natl Cancer Inst Y1 - 2007 SP - 826 EP - 7 VL - 99 IS - 11 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17551136&dopt=Abstract ER - TY - JOUR A1 - Tetsuyuki Akashi A1 - Takao Yamori T1 - A novel method for analyzing phosphoproteins using SELDI-TOF MS in combination with a series of recombinant proteins JO - PROTEOMICS Y1 - 2007 SP - 2350 EP - 2354 VL - 7 IS - 14 UR - http://dx.doi.org/10.1002/pmic.200700157 ER - TY - JOUR A1 - Xumin Zhang A1 - Liang Shi A1 - Shaokung Shu A1 - Yuan Wang A1 - Kang Zhao A1 - Ningzhi Xu A1 - Siqi Liu A1 - Peter Roepstorff T1 - An improved method of sample preparation on AnchorChipTM targets for MALDI-MS and MS/MS and its application in the liver proteome project JO - PROTEOMICS Y1 - 2007 SP - 2340 EP - 2349 VL - 7 IS - 14 UR - http://dx.doi.org/10.1002/pmic.200600184 ER - TY - JOUR A1 - Robert-Alain Toillon A1 - Chann Lagadec A1 - Adeline Page A1 - Valerie Chopin A1 - Pierre-Eric Sautiere A1 - Jean-Marc Ricort A1 - Jerome Lemoine A1 - Ming Zhang A1 - Hubert Hondermarck A1 - Xuefen Le Bourhis T1 - Proteomics Demonstration That Normal Breast Epithelial Cells Can Induce Apoptosis of Breast Cancer Cells through Insulin-like Growth Factor-binding Protein-3 and Maspin JO - Mol Cell Proteomics Y1 - 2007 SP - 1239 EP - 1247 VL - 6 IS - 7 UR - http://www.mcponline.org/cgi/content/abstract/6/7/1239?etoc ER - TY - JOUR A1 - Liam A. McDonnell A1 - Ron M.A. Heeren T1 - Imaging mass spectrometry JO - Mass Spectrometry Reviews Y1 - 2007 SP - 606 EP - 643 VL - 26 IS - 4 UR - http://dx.doi.org/10.1002/mas.20124 ER - TY - JOUR A1 - Reid JD A1 - Parker CE A1 - Borchers CH T1 - Protein arrays for biomarker discovery JO - Curr Opin Mol Ther Y1 - 2007 SP - 216 EP - 21 VL - 9 IS - 3 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17608019&dopt=Abstract ER - TY - JOUR A1 - Mulu Gebremedhin A1 - Hongying Zhong A1 - Shaohua Wang A1 - Michael Weinfeld A1 - Liang Li T1 - Benefit of microwave-assisted acid hydrolysis of proteins for mass spectrometric profiling of the human heart tissue proteome JO - Rapid Communications in Mass Spectrometry Y1 - 2007 SP - 2779 EP - 2783 VL - 21 IS - 16 UR - http://dx.doi.org/10.1002/rcm.3125 ER - TY - JOUR A1 - Ilka Wittig A1 - Michael Karas A1 - Hermann Schagger T1 - High Resolution Clear Native Electrophoresis for In-gel Functional Assays and Fluorescence Studies of Membrane Protein Complexes JO - Mol Cell Proteomics Y1 - 2007 SP - 1215 EP - 1225 VL - 6 IS - 7 UR - http://www.mcponline.org/cgi/content/abstract/6/7/1215?etoc ER - TY - JOUR A1 - Barre O A1 - Mourlane F A1 - Solioz M T1 - Copper-Induction of Lactate Oxidase (LctO) of Lactococcus lactis: A Novel Metal Stress-Response JO - J Bacteriol Y1 - 2007/06/8 SP - EP - VL - IS - UR - http://dx.doi.org/10.1128/JB.00576-07 ER - TY - JOUR A1 - Opii WO A1 - Nukala VN A1 - Sultana R A1 - Pandya JD A1 - Day KM A1 - Merchant ML A1 - Klein JB A1 - Sullivan PG A1 - Butterfield DA T1 - Proteomic Identification of Oxidized Mitochondrial Proteins following Experimental Traumatic Brain Injury JO - J Neurotrauma Y1 - 2007 SP - 772 EP - 89 VL - 24 IS - 5 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17518533&dopt=Abstract ER - TY - JOUR A1 - Weerapana E A1 - Speers AE A1 - Cravatt BF T1 - Tandem orthogonal proteolysis-activity-based protein profiling (TOP-ABPP)-a general method for mapping sites of probe modification in proteomes JO - Nat Protoc Y1 - 2007 SP - 1414 EP - 25 VL - 2 IS - 6 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17545978&dopt=Abstract ER - TY - JOUR A1 - Yi-Ting Chen A1 - Chao-Yun Tsao A1 - Jen-Ming Li A1 - Chih-Yen Tsai A1 - Su-Feng Chiu A1 - Tzu-Ling Tseng T1 - Large-scale protein identification of human urine proteome by multi-dimensional LC and MS/MS JO - PROTEOMICS - Clinical Applications Y1 - 2007 SP - 577 EP - 587 VL - 1 IS - 6 UR - http://dx.doi.org/10.1002/prca.200600769 ER - TY - JOUR A1 - Paulson L A1 - Eriksson PS A1 - Curtis MA T1 - Defining primary and secondary progenitor disorders in the brain: proteomic approaches for analysis of neural progenitor cells JO - Curr Pharm Biotechnol Y1 - 2007 SP - 117 EP - 25 VL - 8 IS - 3 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17584084&dopt=Abstract ER - TY - JOUR A1 - Martin Skold A1 - Tobias Ryden A1 - Viktoria Samuelsson A1 - Charlotte Bratt A1 - Lars Ekblad A1 - Hakan Olsson A1 - Bo Baldetorp T1 - Regression analysis and modelling of data acquisition for SELDI-TOF mass spectrometry JO - Bioinformatics Y1 - 2007 SP - 1401 EP - 1409 VL - 23 IS - 11 UR - http://bioinformatics.oxfordjournals.org/cgi/content/abstract/23/11/1401?etoc ER - TY - JOUR A1 - Takashi Manabe A1 - Ya Jin T1 - Analysis of protein/polypeptide interactions in human plasma using nondenaturing micro-2-DE followed by 3-D SDS-PAGE and MS JO - ELECTROPHORESIS Y1 - 2007 SP - 2065 EP - 2079 VL - 28 IS - 12 UR - http://dx.doi.org/10.1002/elps.200600691 ER - TY - JOUR A1 - Bader N A1 - Jung T A1 - Grune T T1 - The proteasome and its role in nuclear protein maintenance JO - Exp Gerontol Y1 - 2007/04/10 SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.exger.2007.03.010 ER - TY - JOUR A1 - Estela Giménez A1 - Fernando Benavente A1 - José Barbosa A1 - Victoria Sanz-Nebot T1 - Towards a reliable molecular mass determination of intact glycoproteins by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry JO - Rapid Communications in Mass Spectrometry Y1 - 2007 SP - 2555 EP - 2563 VL - 21 IS - 16 UR - http://dx.doi.org/10.1002/rcm.3109 ER - TY - JOUR A1 - Betts MJ A1 - Russell RB T1 - The hard cell: From proteomics to a whole cell model JO - FEBS Lett Y1 - 2007 SP - 2870 EP - 6 VL - 581 IS - 15 UR - http://dx.doi.org/10.1016/j.febslet.2007.05.062 ER - TY - JOUR A1 - Ailís Fagan A1 - Aedín C. Culhane A1 - Desmond G. Higgins T1 - A multivariate analysis approach to the integration of proteomic and gene expression data JO - PROTEOMICS Y1 - 2007 SP - 2162 EP - 2171 VL - 7 IS - 13 UR - http://dx.doi.org/10.1002/pmic.200600898 ER - TY - JOUR A1 - Zsuzsanna Birko A1 - Sylwia Bialek A1 - Krisztina Buzas A1 - Emilia Szajli A1 - Bjorn A. Traag A1 - Katalin F. Medzihradszky A1 - Sebastien Rigali A1 - Erik Vijgenboom A1 - Andras Penyige A1 - Zoltan Kele A1 - Gilles P. van Wezel A1 - Sandor Biro T1 - The Secreted Signaling Protein Factor C Triggers the A-factor Response Regulon in Streptomyces griseus: Overlapping Signaling Routes JO - Mol Cell Proteomics Y1 - 2007 SP - 1248 EP - 1256 VL - 6 IS - 7 UR - http://www.mcponline.org/cgi/content/abstract/6/7/1248?etoc ER - TY - JOUR A1 - Hyunyoung Kim A1 - Sooyeon Jo A1 - Hye-Jin Song A1 - Zee-Yong Park A1 - Chul-Seung Park T1 - Myelin basic protein as a binding partner and calmodulin adaptor for the BKCa channel JO - PROTEOMICS Y1 - 2007 SP - 2591 EP - 2602 VL - 7 IS - 15 UR - http://dx.doi.org/10.1002/pmic.200700185 ER - TY - JOUR A1 - Chebira A A1 - Barbotin Y A1 - Jackson C A1 - Merryman T A1 - Srinivasa G A1 - Murphy RF A1 - Kovacevic J T1 - A multiresolution approach to automated classification of protein subcellular location images JO - Y1 - SP - EP - VL - IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17578580&dopt=Abstract ER - TY - JOUR A1 - Arias-Loza PA A1 - Hu K A1 - Dienesch C A1 - Mehlich AM A1 - Konig S A1 - Jazbutyte V A1 - Neyses L A1 - Hegele-Hartung C A1 - Fritzemeier KH A1 - Pelzer T T1 - Both Estrogen Receptor Subtypes, {alpha} and {beta}, Attenuate Cardiovascular Remodeling in Aldosterone Salt-Treated Rats JO - Hypertension Y1 - 2007 SP - 432 EP - 8 VL - 50 IS - 2 UR - http://dx.doi.org/10.1161/HYPERTENSIONAHA.106.084798 ER - TY - JOUR A1 - Parastatidis I A1 - Thomson L A1 - Fries DM A1 - Moore RE A1 - Tohyama J A1 - Fu X A1 - Hazen SL A1 - Heijnen HF A1 - Dennehy MK A1 - Liebler DC A1 - Rader DJ A1 - Ischiropoulos H T1 - Increased Protein Nitration Burden in the Atherosclerotic Lesions and Plasma of Apolipoprotein A-I-Deficient Mice JO - Circ Res Y1 - 2007/07/5 SP - EP - VL - IS - UR - http://dx.doi.org/10.1161/CIRCRESAHA.107.157537 ER - TY - JOUR A1 - Maurya P A1 - Meleady P A1 - Dowling P A1 - Clynes M T1 - Proteomic approaches for serum biomarker discovery in cancer JO - Anticancer Res Y1 - 2007 SP - 1247 EP - 55 VL - 27 IS - 3A UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17593616&dopt=Abstract ER - TY - JOUR A1 - Johanna Annunen-Rasila A1 - Steffen Ohlmeier A1 - Hanna Tuokko A1 - Johanna Veijola A1 - Kari Majamaa T1 - Proteome and cytoskeleton responses in osteosarcoma cells with reduced OXPHOS activity JO - PROTEOMICS Y1 - 2007 SP - 2189 EP - 2200 VL - 7 IS - 13 UR - http://dx.doi.org/10.1002/pmic.200601031 ER - TY - JOUR A1 - Jia Zhao A1 - Andrew C. Chang A1 - Chen Li A1 - Kerby A. Shedden A1 - Dafydd G. Thomas A1 - David E. Misek A1 - Arun Prasad Manoharan A1 - Thomas J. Giordano A1 - David G. Beer A1 - David M. Lubman T1 - Comparative Proteomics Analysis of Barrett Metaplasia and Esophageal Adenocarcinoma Using Two-dimensional Liquid Mass Mapping JO - Mol Cell Proteomics Y1 - 2007 SP - 987 EP - 999 VL - 6 IS - 6 UR - http://www.mcponline.org/cgi/content/abstract/6/6/987?etoc ER - TY - JOUR A1 - Kantzilakis K A1 - Aivaliotis M A1 - Kotakis C A1 - Krasanakis F A1 - Rizos AK A1 - Kotzabasis K A1 - Tsiotis G T1 - A comparative approach towards thylakoid membrane proteome analysis of unicellular green alga Scenedesmus obliquus JO - Biochim Biophys Acta Y1 - 2007/05/13 SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.bbamem.2007.04.028 ER - TY - JOUR A1 - Jeong HC A1 - Lee SY A1 - Lee EJ A1 - Jung KH A1 - Kang EH A1 - Lee SY A1 - Kim JH A1 - Park EK A1 - Lee SH A1 - Uhm CS A1 - Cho Y A1 - Shin C A1 - Shim JJ A1 - Kim HK A1 - In KH A1 - Kang KH A1 - Yoo SH T1 - Proteomic Analysis of Peripheral T-lymphocytes in Patients with Asthma JO - Chest Y1 - 2007/06/5 SP - EP - VL - IS - UR - http://dx.doi.org/10.1378/chest.06-2980 ER - TY - JOUR A1 - Sung-Soo Park A1 - Dae-Seok Kim A1 - Kang-Seo Park A1 - Hye-Jin Song A1 - Soo-Youl Kim T1 - Proteomic analysis of high-molecular-weight protein polymers in a doxorubicin-resistant breast-cancer cell line JO - PROTEOMICS - Clinical Applications Y1 - 2007 SP - 555 EP - 560 VL - 1 IS - 6 UR - http://dx.doi.org/10.1002/prca.200700122 ER - TY - JOUR A1 - Jia N A1 - Liu X A1 - Wen J A1 - Qian L A1 - Qian X A1 - Wu Y A1 - Fan G T1 - A proteomic method for analysis of CYP450s protein expression changes in carbon tetrachloride induced male rat liver microsomes JO - Toxicology Y1 - 2007 SP - 1 EP - 11 VL - 237 IS - 1-3 UR - http://dx.doi.org/10.1016/j.tox.2007.04.015 ER - TY - JOUR A1 - Costa FT A1 - Neto SM A1 - Bloch C Jr A1 - Franco OL T1 - Susceptibility of Human Pathogenic Bacteria to Antimicrobial Peptides from Sesame Kernels JO - Curr Microbiol Y1 - 2007 SP - 162 EP - 6 VL - 55 IS - 2 UR - http://dx.doi.org/10.1007/s00284-007-0131-0 ER - TY - JOUR A1 - Larrainzar E A1 - Wienkoop S A1 - Weckwerth W A1 - Ladrera R A1 - Arrese-Igor C A1 - Gonzalez EM T1 - Medicago truncatula Root Nodule Proteome Analysis Reveals Differential Plant and Bacteroid Responses to Drought Stress JO - Plant Physiol Y1 - 2007/06/1 SP - EP - VL - IS - UR - http://dx.doi.org/10.1104/pp.107.101618 ER - TY - JOUR A1 - Kanitz MH A1 - Witzmann FA A1 - Lotz WG A1 - Conover D A1 - Savage RE Jr T1 - Investigation of protein expression in magnetic field-treated human glioma cells JO - Bioelectromagnetics Y1 - 2007/06/14 SP - EP - VL - IS - UR - http://dx.doi.org/10.1002/bem.20326 ER - TY - JOUR A1 - Henry T A1 - Fonseca R T1 - Genomics and proteomics in multiple myeloma and Waldenstrom macroglobulinemia JO - Curr Opin Hematol Y1 - 2007 SP - 369 EP - 74 VL - 14 IS - 4 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17534163&dopt=Abstract ER - TY - JOUR A1 - Zhou Y A1 - Aebersold R A1 - Zhang H T1 - Isolation of N-Linked Glycopeptides from Plasma JO - Anal Chem Y1 - 2007/06/26 SP - EP - VL - IS - UR - http://dx.doi.org/10.1021/ac0623181 ER - TY - JOUR A1 - Santos-Gonzalez M A1 - Gomez Diaz C A1 - Navas P A1 - Villalba JM T1 - Modifications of plasma proteome in long-lived rats fed on a coenzyme Q(10)-supplemented diet JO - Exp Gerontol Y1 - 2007/05/10 SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.exger.2007.04.013 ER - TY - JOUR A1 - Claudia Cirulli A1 - Gennaro Marino A1 - Angela Amoresano T1 - Membrane proteome in Escherichia coli probed by MS3 mass spectrometry: a preliminary report JO - Rapid Communications in Mass Spectrometry Y1 - 2007 SP - 2389 EP - 2397 VL - 21 IS - 14 UR - http://dx.doi.org/10.1002/rcm.3104 ER - TY - JOUR A1 - Giuliano Elia T1 - Book Review: Quantitative Proteomics by Mass Spectrometry. By Salvatore Sechi (Ed.) JO - PROTEOMICS Y1 - 2007 SP - 2311 EP - 2312 VL - 7 IS - 13 UR - http://dx.doi.org/10.1002/pmic.200790048 ER - TY - JOUR A1 - Shona L. Osborne A1 - Tristan P. Wallis A1 - Jose L. Jimenez A1 - Jeffrey J. Gorman A1 - Frederic A. Meunier T1 - Identification of Secretory Granule Phosphatidylinositol 4,5-Bisphosphate-interacting Proteins Using an Affinity Pulldown Strategy JO - Mol Cell Proteomics Y1 - 2007 SP - 1158 EP - 1169 VL - 6 IS - 7 UR - http://www.mcponline.org/cgi/content/abstract/6/7/1158?etoc ER - TY - JOUR A1 - Leng G T1 - Proteomics: inspiring new hypotheses in the vasopressin system JO - Endocrinology Y1 - 2007 SP - 3039 EP - 40 VL - 148 IS - 7 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17575058&dopt=Abstract ER - TY - JOUR A1 - Millea KM A1 - Krull IS A1 - Chakraborty AB A1 - Gebler JC A1 - Berger SJ T1 - Comparative profiling of human saliva by intact protein LC/ESI-TOF mass spectrometry JO - Biochim Biophys Acta Y1 - 2007 SP - 897 EP - 906 VL - 1774 IS - 7 UR - http://dx.doi.org/10.1016/j.bbapap.2007.04.017 ER - TY - JOUR A1 - Takashi Obama A1 - Rina Kato A1 - Yutaka Masuda A1 - Katsuhiko Takahashi A1 - Toshihiro Aiuchi A1 - Hiroyuki Itabe T1 - Analysis of modified apolipoprotein B-100 structures formed in oxidized low-density lipoprotein using LC-MS/MS JO - PROTEOMICS Y1 - 2007 SP - 2132 EP - 2141 VL - 7 IS - 13 UR - http://dx.doi.org/10.1002/pmic.200700111 ER - TY - JOUR A1 - Sanchez A A1 - Ramos Y A1 - Solano Y A1 - Gonzalez LJ A1 - Besada V A1 - Betancourt L A1 - Gil J A1 - Alvarez F A1 - Rodriguez M A1 - Perez L A1 - Pujol M A1 - Padron G T1 - Double acylation for identification of amino-terminal peptides of proteins isolated by polyacrylamide gel electrophoresis JO - Rapid Commun Mass Spectrom Y1 - 2007 SP - 2237 EP - 2244 VL - 21 IS - 14 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17569096&dopt=Abstract ER - TY - JOUR A1 - Ivory X. Peng A1 - Jentaie Shiea A1 - Rachel R. Ogorzalek Loo A1 - Joseph A. Loo T1 - Electrospray-assisted laser desorption/ionization and tandem mass spectrometry of peptides and proteins JO - Rapid Communications in Mass Spectrometry Y1 - 2007 SP - 2541 EP - 2546 VL - 21 IS - 16 UR - http://dx.doi.org/10.1002/rcm.3154 ER - TY - JOUR A1 - Tarran SL A1 - Craft GE A1 - Valova V A1 - Robinson PJ A1 - Thomas G A1 - Markham R A1 - Langlois NE A1 - Vanezis P T1 - The use of proteomics to study wound healing: a preliminary study for forensic estimation of wound age JO - Med Sci Law Y1 - 2007 SP - 134 EP - 40 VL - 47 IS - 2 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17520958&dopt=Abstract ER - TY - JOUR A1 - Hummel J Jh A1 - Niemann M Mn A1 - Wienkoop S Sw A1 - Schulze W Ws A1 - Steinhaeuser D Ds A1 - Selbig J Js A1 - Walther D Dw A1 - Weckwerth W Ww T1 - ProMEX: a mass spectral reference database for proteins and protein phosphorylation sites JO - Y1 - SP - EP - VL - IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17587460&dopt=Abstract ER - TY - JOUR A1 - Cirulli C A1 - Marino G A1 - Amoresano A T1 - Membrane proteome in Escherichia coli probed by MS(3) mass spectrometry: a preliminary report JO - Rapid Commun Mass Spectrom Y1 - 2007 SP - 2389 EP - 2397 VL - 21 IS - 14 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17595003&dopt=Abstract ER - TY - JOUR A1 - Masashi Nakamura A1 - Atsuo Kuramasu A1 - Ichiro Nakashima A1 - Kazuo Fujihara A1 - Yasuto Itoyama T1 - Candidate antigens specifically detected by cerebrospinal fluid-IgG in oligoclonal IgG bands-positive multiple sclerosis patients JO - PROTEOMICS - Clinical Applications Y1 - 2007 SP - 681 EP - 687 VL - 1 IS - 7 UR - http://dx.doi.org/10.1002/prca.200700182 ER - TY - JOUR A1 - Aitken RJ A1 - Nixon B A1 - Lin M A1 - Koppers AJ A1 - Lee YH A1 - Baker MA T1 - Proteomic changes in mammalian spermatozoa during epididymal maturation JO - Asian J Androl Y1 - 2007 SP - 554 EP - 64 VL - 9 IS - 4 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17589795&dopt=Abstract ER - TY - JOUR A1 - Polen T A1 - Schluesener D A1 - Poetsch A A1 - Bott M A1 - Wendisch VF T1 - Characterization of citrate utilization in Corynebacterium glutamicum by transcriptome and proteome analysis JO - FEMS Microbiol Lett Y1 - 2007 SP - 109 EP - 19 VL - 273 IS - 1 UR - http://dx.doi.org/10.1111/j.1574-6968.2007.00793.x ER - TY - JOUR A1 - Collin OL A1 - Beier M A1 - Jackson GP T1 - Dynamic Collision-Induced Dissociation of Peptides in a Quadrupole Ion Trap Mass Spectrometer JO - Anal Chem Y1 - 2007 SP - 5468 EP - 73 VL - 79 IS - 14 UR - http://dx.doi.org/10.1021/ac0707683 ER - TY - JOUR A1 - Paola Alejandra Fiorani Celedon A1 - Alexander de Andrade A1 - Karem Guimarães Xavier Meireles A1 - Mayra Costa da Cruz Gallo de Carvalho A1 - Danielle Gregorio Gomes Caldas A1 - David Henry Moon A1 - Raphael Tozelli Carneiro A1 - Lívia Maria Franceschini A1 - Shinitiro Oda A1 - Carlos Albe T1 - Proteomic analysis of the cambial region in juvenile Eucalyptus grandis at three ages JO - PROTEOMICS Y1 - 2007 SP - 2258 EP - 2274 VL - 7 IS - 13 UR - http://dx.doi.org/10.1002/pmic.200600989 ER - TY - JOUR A1 - Thiele T A1 - Steil L A1 - Volker U A1 - Greinacher A T1 - Proteomics of blood-based therapeutics: a promising tool for quality assurance in transfusion medicine JO - BioDrugs Y1 - 2007 SP - 179 EP - 93 VL - 21 IS - 3 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17516713&dopt=Abstract ER - TY - JOUR A1 - Dipankar Bhattacharya A1 - Debashis Mukhopadhyay A1 - Abhijit Chakrabarti T1 - Hemoglobin depletion from red blood cell cytosol reveals new proteins in 2-D gel-based proteomics study JO - PROTEOMICS - Clinical Applications Y1 - 2007 SP - 561 EP - 564 VL - 1 IS - 6 UR - http://dx.doi.org/10.1002/prca.200700178 ER - TY - JOUR A1 - Robert J Caiazzo Jr A1 - Oliver W Tassinari A1 - Joshua R Ehrlich A1 - Brian CS Liu T1 - Autoantibody microarrays for biomarker discovery JO - Expert Review of Proteomics Y1 - 2007 SP - 261 EP - 272 VL - 4 IS - 2 UR - http://dx.doi.org/10.1586/14789450.4.2.261 ER - TY - JOUR A1 - Geoff W. Birrell A1 - Stephen T. H. Earl A1 - Tristan P. Wallis A1 - Paul P. Masci A1 - John de Jersey A1 - Jeffrey J. Gorman A1 - Martin F. Lavin T1 - The Diversity of Bioactive Proteins in Australian Snake Venoms JO - Mol Cell Proteomics Y1 - 2007 SP - 973 EP - 986 VL - 6 IS - 6 UR - http://www.mcponline.org/cgi/content/abstract/6/6/973?etoc ER - TY - JOUR A1 - Richard G. Kay A1 - Barbara Gregory A1 - Philip B. Grace A1 - Steve Pleasance T1 - The application of ultra-performance liquid chromatography/tandem mass spectrometry to the detection and quantitation of apolipoproteins in human serum JO - Rapid Communications in Mass Spectrometry Y1 - 2007 SP - 2585 EP - 2593 VL - 21 IS - 16 UR - http://dx.doi.org/10.1002/rcm.3130 ER - TY - JOUR A1 - Nkemdilim C. Uwaje A1 - Nikola S. Mueller A1 - Giuseppina Maccarrone A1 - Christoph W. Turck T1 - Interrogation of MS/MS search data with an pI Filter algorithm to increase protein identification success JO - ELECTROPHORESIS Y1 - 2007 SP - 1867 EP - 1874 VL - 28 IS - 12 UR - http://dx.doi.org/10.1002/elps.200700022 ER - TY - JOUR A1 - Lee JW A1 - Namkoong H A1 - Kim HK A1 - Kim S A1 - Hwang DW A1 - Na HR A1 - Ha SA A1 - Kim JR A1 - Kim JW T1 - Fibrinogen gamma-A chain precursor in cerebrospinal fluid: a candidate biomarker for Alzheimer's disease JO - Y1 - SP - EP - VL - IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17565664&dopt=Abstract ER - TY - JOUR A1 - Dobrin Nedelkov A1 - David A. Phillips A1 - Kemmons A. Tubbs A1 - Randall W. Nelson T1 - Investigation of Human Protein Variants and Their Frequency in the General Population JO - Mol Cell Proteomics Y1 - 2007 SP - 1183 EP - 1187 VL - 6 IS - 7 UR - http://www.mcponline.org/cgi/content/abstract/6/7/1183?etoc ER - TY - JOUR A1 - Sylvane Desrivières A1 - Karsten Kuhn A1 - Jörg Müller A1 - Melanie Gläser A1 - Nahomi Castro-Palomino Laria A1 - Jutta Korder A1 - Michael Sonnentag A1 - Thomas Neumann A1 - Josef Schwarz A1 - Jürgen Schäfer A1 - Christian Hamon A1 - Bernd Groner A1 - Thorsten Prinz T1 - Comparison of the nuclear proteomes of mammary epithelial cells at different stages of functional differentiation JO - PROTEOMICS Y1 - 2007 SP - 2019 EP - 2037 VL - 7 IS - 12 UR - http://dx.doi.org/10.1002/pmic.200600994 ER - TY - JOUR A1 - Frode S. Berven A1 - Ann C. Kroksveen A1 - Magnus Berle A1 - Tarja Rajalahti A1 - Kristian Flikka A1 - Reidar Arneberg A1 - Kjell-Morten Myhr A1 - Christian Vedeler A1 - Olav M. Kvalheim A1 - Rune J. Ulvik T1 - Pre-analytical influence on the low molecular weight cerebrospinal fluid proteome JO - PROTEOMICS - Clinical Applications Y1 - 2007 SP - 699 EP - 711 VL - 1 IS - 7 UR - http://dx.doi.org/10.1002/prca.200700126 ER - TY - JOUR A1 - John Yates A1 - Peipei Ping A1 - John Bergeron T1 - The HUPO World Congress at Long Beach, 2006 JO - Mol Cell Proteomics Y1 - 2007 SP - 1110 EP - 1111 VL - 6 IS - 6 UR - http://www.mcponline.org/cgi/content/full/6/6/1110?etoc ER - TY - JOUR A1 - Nawrot R A1 - Kalinowski A A1 - Gozdzicka-Jozefiak A T1 - Proteomic analysis of Chelidonium majus milky sap using two-dimensional gel electrophoresis and tandem mass spectrometry JO - Phytochemistry Y1 - 2007 SP - 1612 EP - 22 VL - 68 IS - 12 UR - http://dx.doi.org/10.1016/j.phytochem.2007.03.039 ER - TY - JOUR A1 - Kalde M A1 - Nuhse TS A1 - Findlay K A1 - Peck SC T1 - The syntaxin SYP132 contributes to plant resistance against bacteria and secretion of pathogenesis-related protein 1 JO - Proc Natl Acad Sci U S A Y1 - 2007 SP - 11850 EP - 5 VL - 104 IS - 28 UR - http://dx.doi.org/10.1073/pnas.0701083104 ER - TY - JOUR A1 - Peluso G A1 - De Santis M A1 - Inzitari R A1 - Fanali C A1 - Cabras T A1 - Messana I A1 - Castagnola M A1 - Ferraccioli GF T1 - Proteomic study of salivary peptides and proteins in patients with Sjogren's syndrome before and after pilocarpine treatment JO - Arthritis Rheum Y1 - 2007 SP - 2216 EP - 2222 VL - 56 IS - 7 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17599740&dopt=Abstract ER - TY - JOUR A1 - German DC A1 - Gurnani P A1 - Nandi A A1 - Garner HR A1 - Fisher W A1 - Diaz-Arrastia R A1 - O'suilleabhain P A1 - Rosenblatt KP T1 - Serum biomarkers for Alzheimer's disease: Proteomic discovery JO - Biomed Pharmacother Y1 - 2007/06/18 SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.biopha.2007.05.009 ER - TY - JOUR A1 - Wan J A1 - Roth AF A1 - Bailey AO A1 - Davis NG T1 - Palmitoylated proteins: purification and identification JO - Nat Protoc Y1 - 2007 SP - 1573 EP - 84 VL - 2 IS - 7 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17585299&dopt=Abstract ER - TY - JOUR A1 - Eriksson J A1 - Fenyo D T1 - Improving the success rate of proteome analysis by modeling protein-abundance distributions and experimental designs JO - Nat Biotechnol Y1 - 2007 SP - 651 EP - 5 VL - 25 IS - 6 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17557102&dopt=Abstract ER - TY - JOUR A1 - Sung-Eun Lee A1 - Jong-Su Seo A1 - Young-Soo Keum A1 - Kwang-Jun Lee A1 - Qing X. Li T1 - Fluoranthene metabolism and associated proteins in Mycobacterium sp. 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Moritz A1 - Yu-Sam Kim A1 - Hong-Jian Zhu A1 - Richard J. Simpson T1 - Analysis of Ras-induced oncogenic transformation of NIH-3T3 cells using differential-display 2-DE proteomics JO - ELECTROPHORESIS Y1 - 2007 SP - 1997 EP - 2008 VL - 28 IS - 12 UR - http://dx.doi.org/10.1002/elps.200700009 ER - TY - JOUR A1 - Cheng X A1 - Young TW A1 - Mei FC T1 - Proteomics analyses of ovarian caner using genetically defined human ovarian cancer models JO - Front Biosci Y1 - 2007 SP - 5166 EP - 5174 VL - 12 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17569638&dopt=Abstract ER - TY - JOUR A1 - Huang H A1 - Hu ZZ A1 - Arighi CN A1 - Wu CH T1 - Integration of bioinformatics resources for functional analysis of gene expression and proteomic data JO - Front Biosci Y1 - 2007 SP - 5071 EP - 5088 VL - 12 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17569631&dopt=Abstract ER - TY - JOUR A1 - Raffaella Di Cagno A1 - Maria De Angelis A1 - Antonio Limitone A1 - Fabio Minervini A1 - Maria Carmela Simonetti A1 - Solange Buchin A1 - Marco Gobbetti T1 - Cell-cell communication in sourdough lactic acid bacteria: A proteomic study in Lactobacillus sanfranciscensis CB1 JO - PROTEOMICS Y1 - 2007 SP - 2430 EP - 2446 VL - 7 IS - 14 UR - http://dx.doi.org/10.1002/pmic.200700143 ER - TY - JOUR A1 - Balwir Matharoo-Ball A1 - Lucy Ratcliffe A1 - Lee Lancashire A1 - Selma Ugurel A1 - Amanda K. Miles A1 - Daniel J. Weston A1 - Robert Rees A1 - Dirk Schadendorf A1 - Graham Ball A1 - Colin S. Creaser T1 - Diagnostic biomarkers differentiating metastatic melanoma patients from healthy controls identified by an integrated MALDI-TOF mass spectrometry/bioinformatic approach JO - PROTEOMICS - Clinical Applications Y1 - 2007 SP - 605 EP - 620 VL - 1 IS - 6 UR - http://dx.doi.org/10.1002/prca.200700022 ER - TY - JOUR A1 - Li S A1 - Zeng D T1 - CILAT - a new reagent for quantitative proteomics JO - Y1 - SP - EP - VL - IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17520129&dopt=Abstract ER - TY - JOUR A1 - Tan F A1 - Zhang Y A1 - Wang J A1 - Wei J A1 - Qin P A1 - Cai Y A1 - Qian X T1 - Specific capture of phosphopeptides on matrix-assisted laser desorption/ionization time-of-flight mass spectrometry targets modified by magnetic affinity nanoparticles JO - Rapid Commun Mass Spectrom Y1 - 2007 SP - 2407 EP - 2414 VL - 21 IS - 14 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17582624&dopt=Abstract ER - TY - JOUR A1 - Yeong Hee Ahn A1 - Eun Sun Ji A1 - Ji Yeon Lee A1 - Kun Cho A1 - Jong Shin Yoo T1 - Arginine-mimic labeling with guanidinoethanethiol to increase mass sensitivity of lysine-terminated phosphopeptides by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry JO - Rapid Communications in Mass Spectrometry Y1 - 2007 SP - 2204 EP - 2210 VL - 21 IS - 14 UR - http://dx.doi.org/10.1002/rcm.3085 ER - TY - JOUR A1 - Pingfang Yang A1 - Hui Chen A1 - Yu Liang A1 - Shihua Shen T1 - Proteomic analysis of de-etiolated rice seedlings upon exposure to light JO - PROTEOMICS Y1 - 2007 SP - 2459 EP - 2468 VL - 7 IS - 14 UR - http://dx.doi.org/10.1002/pmic.200600215 ER - TY - JOUR A1 - Hopf C A1 - Bantscheff M A1 - Drewes G T1 - Pathway proteomics and chemical proteomics team up in drug discovery JO - Neurodegener Dis Y1 - 2007 SP - 270 EP - 80 VL - 4 IS - 2-3 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17596721&dopt=Abstract ER - TY - JOUR A1 - Laura Calpe-Berdiel A1 - Joan Carles Escolà-Gil A1 - Josep Julve A1 - Edgar Zapico-Muñiz A1 - Francesc Canals A1 - Francisco Blanco-Vaca T1 - Differential intestinal mucosal protein expression in hypercholesterolemic mice fed a phytosterol-enriched diet JO - PROTEOMICS Y1 - 2007 SP - 2659 EP - 2666 VL - 7 IS - 15 UR - http://dx.doi.org/10.1002/pmic.200600792 ER - TY - JOUR A1 - Todd G. Smith A1 - Jae-Min Lim A1 - Michael V. Weinberg A1 - Lance Wells A1 - Timothy R. Hoover T1 - Direct analysis of the extracellular proteome from two strains of Helicobacter pylori JO - PROTEOMICS Y1 - 2007 SP - 2240 EP - 2245 VL - 7 IS - 13 UR - http://dx.doi.org/10.1002/pmic.200600875 ER - TY - JOUR A1 - Mitchell GB A1 - Clark ME A1 - Caswell JL T1 - Alterations in the bovine bronchoalveolar lavage proteome induced by dexamethasone JO - Vet Immunol Immunopathol Y1 - 2007 SP - 283 EP - 93 VL - 118 IS - 3-4 UR - http://dx.doi.org/10.1016/j.vetimm.2007.05.017 ER - TY - JOUR A1 - Hortschansky P A1 - Eisendle M A1 - Al-Abdallah Q A1 - Schmidt AD A1 - Bergmann S A1 - Thon M A1 - Kniemeyer O A1 - Abt B A1 - Seeber B A1 - Werner ER A1 - Kato M A1 - Brakhage AA A1 - Haas H T1 - Interaction of HapX with the CCAAT-binding complex-a novel mechanism of gene regulation by iron JO - EMBO J Y1 - 2007 SP - 3157 EP - 68 VL - 26 IS - 13 UR - http://dx.doi.org/10.1038/sj.emboj.7601752 ER - TY - JOUR A1 - Patel S A1 - Sinha A A1 - Singh MP T1 - Identification of differentially expressed proteins in striatum of maneb-and paraquat-induced Parkinson's disease phenotype in mouse JO - Neurotoxicol Teratol Y1 - 2007/04/27 SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.ntt.2007.04.002 ER - TY - JOUR A1 - Kusch H A1 - Engelmann S A1 - Bode R A1 - Albrecht D A1 - Morschhauser J A1 - Hecker M T1 - A proteomic view of Candida albicans yeast cell metabolism in exponential and stationary growth phases JO - Int J Med Microbiol Y1 - 2007/06/22 SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.ijmm.2007.03.020 ER - TY - JOUR A1 - Angela M. Kaindl A1 - Claus Zabel A1 - Vanya Stefovska A1 - Ron Lehnert A1 - Marco Sifringer A1 - Joachim Klose A1 - Chrysanthy Ikonomidou T1 - Subacute proteome changes following traumatic injury of the developing brain: Implications for a dysregulation of neuronal migration and neurite arborization JO - PROTEOMICS - Clinical Applications Y1 - 2007 SP - 640 EP - 649 VL - 1 IS - 7 UR - http://dx.doi.org/10.1002/prca.200600696 ER - TY - JOUR A1 - Hershberger SJ A1 - Lee SG A1 - Chmielewski J T1 - Scaffolds for blocking protein-protein interactions JO - Curr Top Med Chem Y1 - 2007 SP - 929 EP - 43 VL - 7 IS - 10 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17508924&dopt=Abstract ER - TY - JOUR A1 - Cathy L. Miller A1 - Michelle M. Arnold A1 - Teresa J. Broering A1 - Catherine Eichwald A1 - Jonghwa Kim A1 - Jason B. Dinoso A1 - Max L. Nibert T1 - Virus-derived Platforms for Visualizing Protein Associations inside Cells JO - Mol Cell Proteomics Y1 - 2007 SP - 1027 EP - 1038 VL - 6 IS - 6 UR - http://www.mcponline.org/cgi/content/abstract/6/6/1027?etoc ER - TY - JOUR A1 - Haleem J. Issaq A1 - Timothy D. Veenstra T1 - The role of electrophoresis in disease biomarker discovery JO - ELECTROPHORESIS Y1 - 2007 SP - 1980 EP - 1988 VL - 28 IS - 12 UR - http://dx.doi.org/10.1002/elps.200600834 ER - TY - JOUR A1 - Hachiya NS A1 - Kaneko K T1 - Investigation of laser-microdissected inclusion bodies JO - Methods Cell Biol Y1 - 2007 SP - 355 EP - 75 VL - 82 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17586264&dopt=Abstract ER - TY - JOUR A1 - Feng J A1 - Naiman DQ A1 - Cooper B T1 - Probability-Based Pattern Recognition and Statistical Framework for Randomization: Modeling Tandem Mass Spectrum/Peptide Sequence False Match Frequencies JO - Bioinformatics Y1 - 2007/05/17 SP - EP - VL - IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17510167&dopt=Abstract ER - TY - JOUR A1 - Naishiro Y A1 - Suzuki C A1 - Kimura M A1 - Yamamoto M A1 - Takahashi H A1 - Sohma H A1 - Hori T A1 - Shinomura Y A1 - Kokai Y A1 - Imai K T1 - -Plasma analysis of rheumatoid arthritis by SELDI- JO - Nihon Rinsho Meneki Gakkai Kaishi Y1 - 2007 SP - 145 EP - 50 VL - 30 IS - 3 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17603254&dopt=Abstract ER - TY - JOUR A1 - Claus Lindbjerg Andersen A1 - Troels Schepeler A1 - Kasper Thorsen A1 - Karin Birkenkamp-Demtroder A1 - Francisco Mansilla A1 - Lauri A. Aaltonen A1 - Soren Laurberg A1 - Torben Falck Orntoft T1 - Clusterin Expression in Normal Mucosa and Colorectal Cancer JO - Mol Cell Proteomics Y1 - 2007 SP - 1039 EP - 1048 VL - 6 IS - 6 UR - http://www.mcponline.org/cgi/content/abstract/6/6/1039?etoc ER - TY - JOUR A1 - Davide Ticozzi-Valerio A1 - Francesca Raimondo A1 - Marina Pitto A1 - Francesco Rocco A1 - Silvano Bosari A1 - Roberto Perego A1 - Cecilia Sarto A1 - Andrea Di Fonzo A1 - Niccolò Bosso A1 - Paolo Mocarelli A1 - Marzia Galli-Kienle A1 - Fulvio Magni T1 - Differential expression of AQP1 in microdomain-enriched membranes of renal cell carcinoma JO - PROTEOMICS - Clinical Applications Y1 - 2007 SP - 588 EP - 597 VL - 1 IS - 6 UR - http://dx.doi.org/10.1002/prca.200601048 ER - TY - JOUR A1 - Nuno Bandeira A1 - Karl R. Clauser A1 - Pavel A. Pevzner T1 - Shotgun Protein Sequencing: Assembly of Peptide Tandem Mass Spectra from Mixtures of Modified Proteins JO - Mol Cell Proteomics Y1 - 2007 SP - 1123 EP - 1134 VL - 6 IS - 7 UR - http://www.mcponline.org/cgi/content/abstract/6/7/1123?etoc ER - TY - JOUR A1 - Domagala A A1 - Pulido S A1 - Kurpisz M A1 - Herr JC T1 - Application of proteomic methods for identification of sperm immunogenic antigens JO - Mol Hum Reprod Y1 - 2007 SP - 437 EP - 44 VL - 13 IS - 7 UR - http://dx.doi.org/10.1093/molehr/gam026 ER - TY - JOUR A1 - Vivian Killet T1 - Discover www.goproteomics.com JO - Y1 - SP - EP - VL - IS - UR - http://dx.doi.org/10.1002/pmic.200790053 ER - TY - JOUR A1 - Juan Antonio Vizcaíno A1 - Lennart Martens A1 - Henning Hermjakob A1 - Randall K. Julian A1 - Norman W. Paton T1 - The PSI formal document process and its implementation on the PSI website JO - PROTEOMICS Y1 - 2007 SP - 2355 EP - 2357 VL - 7 IS - 14 UR - http://dx.doi.org/10.1002/pmic.200700064 ER - TY - JOUR A1 - Tian T A1 - Hao J A1 - Xu A A1 - Hao J A1 - Luo C A1 - Liu C A1 - Huang L A1 - Xiao X A1 - He D T1 - Determination of metastasis-associated proteins in non-small cell lung cancer by comparative proteomic analysis JO - Cancer Sci Y1 - 2007 SP - 1265 EP - 1274 VL - 98 IS - 8 UR - http://dx.doi.org/10.1111/j.1349-7006.2007.00514.x ER - TY - JOUR A1 - Jerald S Feitelson T1 - CHI's 7th Annual Prospecting the Plasma Proteome. 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Druker A1 - Yoon-Pin Lim T1 - Phosphoproteomics identified Endofin, DCBLD2, and KIAA0582 as novel tyrosine phosphorylation targets of EGF signaling and Iressa in human cancer cells JO - PROTEOMICS Y1 - 2007 SP - 2384 EP - 2397 VL - 7 IS - 14 UR - http://dx.doi.org/10.1002/pmic.200600968 ER - TY - JOUR A1 - Peipei Ping A1 - Rolf Apweiler A1 - John Bergeron T1 - MCP and HUPO: An Era of New Partnership JO - Mol Cell Proteomics Y1 - 2007 SP - 951 EP - 952 VL - 6 IS - 6 UR - http://www.mcponline.org/cgi/content/full/6/6/951-a?etoc ER - TY - JOUR A1 - Fang X A1 - Yang L A1 - Wang W A1 - Song T A1 - Lee CS A1 - Devoe DL A1 - Balgley BM T1 - Comparison of Electrokinetics-Based Multidimensional Separations Coupled with Electrospray Ionization-Tandem Mass Spectrometry for Characterization of Human Salivary Proteins JO - Anal Chem Y1 - 2007 SP - 5785 EP - 5792 VL - 79 IS - 15 UR - http://dx.doi.org/10.1021/ac070611a ER - TY - JOUR A1 - Rosenhahn J A1 - Weise A A1 - Michel S A1 - Hennig K A1 - Hartmann I A1 - Schiefner J A1 - Schubert K A1 - Liehr T A1 - Von Eggeling F A1 - Loncarevic IF T1 - Cytogenetic characterisation and proteomic profiling of the Imatinib-resistant cell line KCL22-R JO - Int J Oncol Y1 - 2007 SP - 121 EP - 8 VL - 31 IS - 1 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17549412&dopt=Abstract ER - TY - JOUR A1 - Rob ter Heine A1 - Carolien G. 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Beynon A1 - Phillip D. Whitfield T1 - Global cooling: Cold acclimation and the expression of soluble proteins in carp skeletal muscle JO - PROTEOMICS Y1 - 2007 SP - 2667 EP - 2681 VL - 7 IS - 15 UR - http://dx.doi.org/10.1002/pmic.200601004 ER - TY - JOUR A1 - Alexander-Kaufman K A1 - Dedova I A1 - Harper C A1 - Matsumoto I T1 - Proteome analysis of the dorsolateral prefrontal region from healthy individuals JO - Neurochem Int Y1 - 2007/05/3 SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.neuint.2007.04.016 ER - TY - JOUR A1 - Jonathan A. Schumacher A1 - David K. Crockett A1 - Kojo S. J. Elenitoba-Johnson A1 - Megan S. Lim T1 - Proteome-wide changes induced by the Hsp90 inhibitor, geldanamycin in anaplastic large cell lymphoma cells JO - PROTEOMICS Y1 - 2007 SP - 2603 EP - 2616 VL - 7 IS - 15 UR - http://dx.doi.org/10.1002/pmic.200700108 ER - TY - JOUR A1 - Mitsuaki Yanagida A1 - Hitoshi Nakayama A1 - Fumiko Yoshizaki A1 - Tsutomu Fujimura A1 - Kenji Takamori A1 - Hideoki Ogawa A1 - Kazuhisa Iwabuchi T1 - Proteomic analysis of plasma membrane lipid rafts of HL-60 cells JO - PROTEOMICS Y1 - 2007 SP - 2398 EP - 2409 VL - 7 IS - 14 UR - http://dx.doi.org/10.1002/pmic.200700056 ER - TY - JOUR A1 - Wolschin F A1 - Amdam GV T1 - Comparative proteomics reveal characteristics of life-history transitions in a social insect JO - Y1 - SP - EP - VL - IS - UR - http://dx.doi.org/10.1186/1477-5956-5-10 ER - TY - JOUR A1 - Millioni R A1 - Puricelli L A1 - Iori E A1 - Tessari P T1 - Rapid, simple and effective technical procedure for the regeneration of IgG and HSA affinity columns for proteomic analysis JO - Amino Acids Y1 - 2007/05/21 SP - EP - VL - IS - UR - http://dx.doi.org/10.1007/s00726-007-0556-6 ER - TY - JOUR A1 - Graham RL A1 - Sharma MK A1 - Ternan NG A1 - Weatherly DB A1 - Tarleton RL A1 - McMullan G T1 - A semi-guantitative GeLC-MS analysis of temporal proteome expression in the emerging nosocomial pathogen Ochrobactrum anthropi JO - Y1 - SP - EP - VL - IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17567905&dopt=Abstract ER - TY - JOUR A1 - Masters JR T1 - Clinical applications of expression profiling and proteomics in prostate cancer JO - Anticancer Res Y1 - 2007 SP - 1273 EP - 6 VL - 27 IS - 3A UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17593619&dopt=Abstract ER - TY - JOUR A1 - Lin WY A1 - Chang JY A1 - Tsai PC A1 - Pan TM T1 - Metabolic Protein Patterns and Monascorubrin Production Revealed through Proteomic Approach for Monascus pilosus Treated with Cycloheximide JO - J Agric Food Chem Y1 - 2007 SP - 5559 EP - 68 VL - 55 IS - 14 UR - http://dx.doi.org/10.1021/jf070162f ER - TY - JOUR A1 - Vendrell I A1 - Carrascal M A1 - Vilaro MT A1 - Abian J A1 - Rodriguez-Farre E A1 - Sunol C T1 - Cell viability and proteomic analysis in cultured neurons exposed to methylmercury JO - Hum Exp Toxicol Y1 - 2007 SP - 263 EP - 72 VL - 26 IS - 4 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17615107&dopt=Abstract ER - TY - JOUR A1 - Christiane Winkler A1 - Katrin Denker A1 - Stefanie Wortelkamp A1 - Albert Sickmann T1 - Silver- and Coomassie-staining protocols: Detection limits and compatibility with ESI MS JO - ELECTROPHORESIS Y1 - 2007 SP - 2095 EP - 2099 VL - 28 IS - 12 UR - http://dx.doi.org/10.1002/elps.200600670 ER - TY - JOUR A1 - Sailaja Elchuri A1 - Mohammed Naeemuddin A1 - Orr Sharpe A1 - William H. Robinson A1 - Ting-Ting Huang T1 - Identification of biomarkers associated with the development of hepatocellular carcinoma in CuZn superoxide dismutase deficient mice JO - PROTEOMICS Y1 - 2007 SP - 2121 EP - 2129 VL - 7 IS - 12 UR - http://dx.doi.org/10.1002/pmic.200601011 ER - TY - JOUR A1 - Kumar A A1 - Tyagi NK A1 - Arevalo E A1 - Miller KW A1 - Kinne RK T1 - A proteomic study of sodium/d-glucose cotransporter 1 (SGLT1): Topology of loop 13 and coverage of other functionally important domains JO - Biochim Biophys Acta Y1 - 2007/05/29 SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.bbapap.2007.05.010 ER - TY - JOUR A1 - Maria Falth A1 - Karl Skold A1 - Marcus Svensson A1 - Anna Nilsson A1 - David Fenyo A1 - Per E. Andren T1 - Neuropeptidomics Strategies for Specific and Sensitive Identification of Endogenous Peptides JO - Mol Cell Proteomics Y1 - 2007 SP - 1188 EP - 1197 VL - 6 IS - 7 UR - http://www.mcponline.org/cgi/content/abstract/6/7/1188?etoc ER - TY - JOUR A1 - Shin H A1 - Sheu B A1 - Joseph M A1 - Markey MK T1 - Guilt-by-association feature selection: Identifying biomarkers from proteomic profiles JO - J Biomed Inform Y1 - 2007/04/14 SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.jbi.2007.04.003 ER - TY - JOUR A1 - Jee-Hyub Kim A1 - Alex Mitchell A1 - Teresa K. Attwood A1 - Melanie Hilario T1 - Learning to extract relations for protein annotation JO - Bioinformatics Y1 - 2007 SP - i256 EP - i263 VL - 23 IS - 13 UR - http://bioinformatics.oxfordjournals.org/cgi/content/abstract/23/13/i256?etoc ER - TY - JOUR A1 - Shin NR A1 - Lee DY A1 - Yoo HS T1 - Identification of quorum sensing-related regulons in Vibrio vulnificus by two-dimensional gel electrophoresis and differentially displayed reverse transcriptase PCR JO - FEMS Immunol Med Microbiol Y1 - 2007 SP - 94 EP - 103 VL - 50 IS - 1 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17506728&dopt=Abstract ER - TY - JOUR A1 - Mohamad Warda A1 - Hyoung Kyu Kim A1 - Nari Kim A1 - Jae Boum Youm A1 - Sung Hyun Kang A1 - Won Sun Park A1 - Tran Min Khoa A1 - Young Hwan Kim A1 - Jin Han T1 - Simulated hyperglycemia in rat cardiomyocytes: A proteomics approach for improved analysis of cellular alterations JO - PROTEOMICS Y1 - 2007 SP - 2570 EP - 2590 VL - 7 IS - 15 UR - http://dx.doi.org/10.1002/pmic.200700168 ER - TY - JOUR A1 - Puteri S. Abdul-Rahman A1 - Boon-Kiong Lim A1 - Onn H. Hashim T1 - Expression of high-abundance proteins in sera of patients with endometrial and cervical cancers: Analysis using 2-DE with silver staining and lectin detection methods JO - ELECTROPHORESIS Y1 - 2007 SP - 1989 EP - 1996 VL - 28 IS - 12 UR - http://dx.doi.org/10.1002/elps.200600629 ER - TY - JOUR A1 - Pan-Kyeom Kim A1 - Mi-Ryung Kim A1 - Hyun-Jung Kim A1 - Hyun-Syuk Yoo A1 - Ji-Soo Kim A1 - Eun-Hee Cho A1 - Chan-Wha Kim T1 - Proteome analysis of the rat hepatic stellate cells under high concentrations of glucose JO - PROTEOMICS Y1 - 2007 SP - 2184 EP - 2188 VL - 7 IS - 13 UR - http://dx.doi.org/10.1002/pmic.200700051 ER - TY - JOUR A1 - Zhang AX A1 - Yu WH A1 - Ma BF A1 - Yu XB A1 - Mao FF A1 - Liu W A1 - Zhang JQ A1 - Zhang XM A1 - Li SN A1 - Li MT A1 - Lahn BT A1 - Xiang AP T1 - Proteomic identification of differently expressed proteins responsible for osteoblast differentiation from human mesenchymal stem cells JO - Mol Cell Biochem Y1 - 2007/05/26 SP - EP - VL - IS - UR - http://dx.doi.org/10.1007/s11010-007-9497-3 ER - TY - JOUR A1 - Eva Lange A1 - Clemens Gropl A1 - Ole Schulz-Trieglaff A1 - Andreas Leinenbach A1 - Christian Huber A1 - Knut Reinert T1 - A geometric approach for the alignment of liquid chromatography mass spectrometry data JO - Bioinformatics Y1 - 2007 SP - i273 EP - i281 VL - 23 IS - 13 UR - http://bioinformatics.oxfordjournals.org/cgi/content/abstract/23/13/i273?etoc ER - TY - JOUR A1 - Mia Jüllig A1 - Anthony J. Hickey A1 - Martin J. Middleditch A1 - David J. Crossman A1 - Stanley C. Lee A1 - Garth J. S. Cooper T1 - Characterization of proteomic changes in cardiac mitochondria in streptozotocin-diabetic rats using iTRAQTM isobaric tags JO - PROTEOMICS - Clinical Applications Y1 - 2007 SP - 565 EP - 576 VL - 1 IS - 6 UR - http://dx.doi.org/10.1002/prca.200600831 ER - TY - JOUR A1 - Wang Y A1 - Liu L A1 - Hu C A1 - Cheng Y T1 - Effects of Salviae Mitiorrhizae and Cortex Moutan extract on the rat heart after myocardial infarction: A proteomic study JO - Biochem Pharmacol Y1 - 2007 SP - 415 EP - 24 VL - 74 IS - 3 UR - http://dx.doi.org/10.1016/j.bcp.2007.04.017 ER - TY - JOUR A1 - Haselberg R A1 - de Jong GJ A1 - Somsen GW T1 - Capillary electrophoresis-mass spectrometry for the analysis of intact proteins JO - J Chromatogr A Y1 - 2007 SP - 81 EP - 109 VL - 1159 IS - 1-2 UR - http://dx.doi.org/10.1016/j.chroma.2007.05.048 ER -