TY  - JOUR
A1  - Chen JY
A1  - Yan Z
A1  - Shen C
A1  - Fitzpatrick DP
A1  - Wang M
T1  - A systems biology approach to the study of Cisplatin drug resistance in ovarian cancers
JO  - J Bioinform Comput Biol
Y1  - 2007
SP  - 383
EP  - 405
VL  - 5
IS  - 2
UR  - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17589967&dopt=Abstract
ER  - 

TY  - JOUR
A1  - Feng J
A1  - Naiman DQ
A1  - Cooper B
T1  - Probability-Based Pattern Recognition and Statistical Framework for Randomization: Modeling Tandem Mass Spectrum/Peptide Sequence False Match Frequencies
JO  - Bioinformatics
Y1  - 2007/05/17
SP  - 
EP  - 
VL  - 
IS  - 
UR  - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17510167&dopt=Abstract
ER  - 

TY  - JOUR
A1  - Hartler J
A1  - Thallinger GG
A1  - Stocker G
A1  - Sturn A
A1  - Burkard TR
A1  - Korner E
A1  - Rader R
A1  - Schmidt A
A1  - Mechtler K
A1  - Trajanoski Z
T1  - MASPECTRAS: a platform for management and analysis of proteomics LC-MS/MS data
JO  - 
Y1  - 
SP  - 
EP  - 
VL  - 
IS  - 
UR  - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17567892&dopt=Abstract
ER  - 

TY  - JOUR
A1  - Miren J. Omaetxebarria
A1  - Felix Elortza
A1  - Eva Rodríguez-Suárez
A1  - Kerman Aloria
A1  - Jesus M. Arizmendi
A1  - Ole N. Jensen
A1  - Rune Matthiesen
T1  - Computational approach for identification and characterization of GPI-anchored peptides in proteomics experiments
JO  - PROTEOMICS
Y1  - 2007
SP  - 1951
EP  - 1960
VL  - 7
IS  - 12
UR  - http://dx.doi.org/10.1002/pmic.200700068
ER  - 

TY  - JOUR
A1  - Linding R
A1  - Jensen LJ
A1  - Ostheimer GJ
A1  - van Vugt MA
A1  - Jorgensen C
A1  - Miron IM
A1  - Diella F
A1  - Colwill K
A1  - Taylor L
A1  - Elder K
A1  - Metalnikov P
A1  - Nguyen V
A1  - Pasculescu A
A1  - Jin J
A1  - Park JG
A1  - Samson LD
A1  - Woodgett JR
A1  - Russell RB
A1  - Bork P
A1  - Yaffe MB
A1  - Pawson T
T1  - Systematic Discovery of In Vivo Phosphorylation Networks
JO  - Cell
Y1  - 2007/06/12
SP  - 
EP  - 
VL  - 
IS  - 
UR  - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17570479&dopt=Abstract
ER  - 

TY  - JOUR
A1  - Chebira A
A1  - Barbotin Y
A1  - Jackson C
A1  - Merryman T
A1  - Srinivasa G
A1  - Murphy RF
A1  - Kovacevic J
T1  - A multiresolution approach to automated classification of protein subcellular location images
JO  - 
Y1  - 
SP  - 
EP  - 
VL  - 
IS  - 
UR  - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17578580&dopt=Abstract
ER  - 

TY  - JOUR
A1  - Nkemdilim C. Uwaje
A1  - Nikola S. Mueller
A1  - Giuseppina Maccarrone
A1  - Christoph W. Turck
T1  - Interrogation of MS/MS search data with an pI Filter algorithm to increase protein identification success
JO  - ELECTROPHORESIS
Y1  - 2007
SP  - 1867
EP  - 1874
VL  - 28
IS  - 12
UR  - http://dx.doi.org/10.1002/elps.200700022
ER  - 

TY  - JOUR
A1  - Klinkert I
A1  - McDonnell LA
A1  - Luxembourg SL
A1  - Maarten Altelaar AF
A1  - Amstalden ER
A1  - Piersma SR
A1  - Heeren RM
T1  - Tools and strategies for visualization of large image data sets in high-resolution imaging mass spectrometry
JO  - 
Y1  - 
SP  - 
EP  - 
VL  - 
IS  - 
UR  - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17552834&dopt=Abstract
ER  - 

TY  - JOUR
A1  - Eva Lange
A1  - Clemens Gropl
A1  - Ole Schulz-Trieglaff
A1  - Andreas Leinenbach
A1  - Christian Huber
A1  - Knut Reinert
T1  - A geometric approach for the alignment of liquid chromatography mass spectrometry data
JO  - Bioinformatics
Y1  - 2007
SP  - i273
EP  - i281
VL  - 23
IS  - 13
UR  - http://bioinformatics.oxfordjournals.org/cgi/content/abstract/23/13/i273?etoc
ER  - 

TY  - JOUR
A1  - Patrick Poullet
A1  - Sabrina Carpentier
A1  - Emmanuel Barillot
T1  - myProMS, a web server for management and validation of mass spectrometry-based proteomic data
JO  - PROTEOMICS
Y1  - 2007
SP  - 2553
EP  - 2556
VL  - 7
IS  - 15
UR  - http://dx.doi.org/10.1002/pmic.200600784
ER  - 

TY  - JOUR
A1  - Mo L
A1  - Dutta D
A1  - Wan Y
A1  - Chen T
T1  - MSNovo: A Dynamic Programming Algorithm for de Novo Peptide Sequencing via Tandem Mass Spectrometry
JO  - Anal Chem
Y1  - 2007
SP  - 4870
EP  - 8
VL  - 79
IS  - 13
UR  - http://dx.doi.org/10.1021/ac070039n
ER  - 

TY  - JOUR
A1  - Bobbie-Jo M. Webb-Robertson
A1  - Elena S. Peterson
A1  - Mudita Singhal
A1  - Kyle R. Klicker
A1  - Christopher S. Oehmen
A1  - Joshua N. Adkins
A1  - Susan L. Havre
T1  - PQuad a visual analysis platform for proteomic data exploration of microbial organisms
JO  - Bioinformatics
Y1  - 2007
SP  - 1705
EP  - 1707
VL  - 23
IS  - 13
UR  - http://bioinformatics.oxfordjournals.org/cgi/content/abstract/23/13/1705?etoc
ER  - 

TY  - JOUR
A1  - Hummel J Jh
A1  - Niemann M Mn
A1  - Wienkoop S Sw
A1  - Schulze W Ws
A1  - Steinhaeuser D Ds
A1  - Selbig J Js
A1  - Walther D Dw
A1  - Weckwerth W Ww
T1  - ProMEX: a mass spectral reference database for proteins and protein phosphorylation sites
JO  - 
Y1  - 
SP  - 
EP  - 
VL  - 
IS  - 
UR  - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17587460&dopt=Abstract
ER  - 

TY  - JOUR
A1  - Ailís Fagan
A1  - Aedín C. Culhane
A1  - Desmond G. Higgins
T1  - A multivariate analysis approach to the integration of proteomic and gene expression data
JO  - PROTEOMICS
Y1  - 2007
SP  - 2162
EP  - 2171
VL  - 7
IS  - 13
UR  - http://dx.doi.org/10.1002/pmic.200600898
ER  - 

TY  - JOUR
A1  - Hoopmann MR
A1  - Finney GL
A1  - Maccoss MJ
T1  - High-Speed Data Reduction, Feature Detection, and MS/MS Spectrum Quality Assessment of Shotgun Proteomics Data Sets Using High-Resolution Mass Spectrometry
JO  - Anal Chem
Y1  - 2007/06/21
SP  - 
EP  - 
VL  - 
IS  - 
UR  - http://dx.doi.org/10.1021/ac0700833
ER  - 

TY  - JOUR
A1  - Kiraga J
A1  - Mackiewicz P
A1  - Mackiewicz D
A1  - Kowalczuk M
A1  - Biecek P
A1  - Polak N
A1  - Smolarczyk K
A1  - Dudek MR
A1  - Cebrat S
T1  - The relationships between the isoelectric point and the length of proteins, taxonomy and ecology of organisms
JO  - 
Y1  - 
SP  - 
EP  - 
VL  - 
IS  - 
UR  - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17565672&dopt=Abstract
ER  - 

TY  - JOUR
A1  - Webb-Robertson
A1  - B.-J. M.
A1  - Cannon
A1  - W. R
T1  - Current trends in computational inference from mass spectrometry-based proteomics
JO  - Brief Bioinform
Y1  - 2007/06/20
SP  - 
EP  - 
VL  - 
IS  - 
UR  - http://dx.doi.org/10.1093/bib/bbm023
ER  - 

TY  - JOUR
A1  - Jee-Hyub Kim
A1  - Alex Mitchell
A1  - Teresa K. Attwood
A1  - Melanie Hilario
T1  - Learning to extract relations for protein annotation
JO  - Bioinformatics
Y1  - 2007
SP  - i256
EP  - i263
VL  - 23
IS  - 13
UR  - http://bioinformatics.oxfordjournals.org/cgi/content/abstract/23/13/i256?etoc
ER  - 

TY  - JOUR
A1  - Patrice Waridel
A1  - Ari Frank
A1  - Henrik Thomas
A1  - Vineeth Surendranath
A1  - Shamil Sunyaev
A1  - Pavel Pevzner
A1  - Andrej Shevchenko
T1  - Sequence similarity-driven proteomics in organisms with unknown genomes by LC-MS/MS and automated de novo sequencing
JO  - PROTEOMICS
Y1  - 2007
SP  - 2318
EP  - 2329
VL  - 7
IS  - 14
UR  - http://dx.doi.org/10.1002/pmic.200700003
ER  - 

TY  - JOUR
A1  - Bandeira N
T1  - Spectral networks: a new approach to de novo discovery of protein sequences and posttranslational modifications
JO  - 
Y1  - 
SP  - 
EP  - 
VL  - 
IS  - 
UR  - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17612289&dopt=Abstract
ER  - 

TY  - JOUR
A1  - Eriksson J
A1  - Fenyo D
T1  - Improving the success rate of proteome analysis by modeling protein-abundance distributions and experimental designs
JO  - Nat Biotechnol
Y1  - 2007
SP  - 651
EP  - 5
VL  - 25
IS  - 6
UR  - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17557102&dopt=Abstract
ER  - 

TY  - JOUR
A1  - Juan Antonio Vizcaíno
A1  - Lennart Martens
A1  - Henning Hermjakob
A1  - Randall K. Julian
A1  - Norman W. Paton
T1  - The PSI formal document process and its implementation on the PSI website
JO  - PROTEOMICS
Y1  - 2007
SP  - 2355
EP  - 2357
VL  - 7
IS  - 14
UR  - http://dx.doi.org/10.1002/pmic.200700064
ER  - 

TY  - JOUR
A1  - Huang H
A1  - Hu ZZ
A1  - Arighi CN
A1  - Wu CH
T1  - Integration of bioinformatics resources for functional analysis of gene expression and proteomic data
JO  - Front Biosci
Y1  - 2007
SP  - 5071
EP  - 5088
VL  - 12
IS  - 
UR  - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17569631&dopt=Abstract
ER  - 

TY  - JOUR
A1  - Sean McIlwain
A1  - David Page
A1  - Edward L. Huttlin
A1  - Michael R. Sussman
T1  - Using dynamic programming to create isotopic distribution maps from mass spectra
JO  - Bioinformatics
Y1  - 2007
SP  - i328
EP  - i336
VL  - 23
IS  - 13
UR  - http://bioinformatics.oxfordjournals.org/cgi/content/abstract/23/13/i328?etoc
ER  - 

TY  - JOUR
A1  - Boehm AM
A1  - Puetz S
A1  - Altenhofer D
A1  - Sickmann A
A1  - Falk M
T1  - Precise protein quantification based on peptide quantification using iTRAQ
JO  - 
Y1  - 
SP  - 
EP  - 
VL  - 
IS  - 
UR  - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17584939&dopt=Abstract
ER  - 

TY  - JOUR
A1  - Peicheng Du
A1  - Rajagopalan Sudha
A1  - Michael B. Prystowsky
A1  - Ruth Hogue Angeletti
T1  - Data reduction of isotope-resolved LC-MS spectra
JO  - Bioinformatics
Y1  - 2007
SP  - 1394
EP  - 1400
VL  - 23
IS  - 11
UR  - http://bioinformatics.oxfordjournals.org/cgi/content/abstract/23/11/1394?etoc
ER  - 

TY  - JOUR
A1  - Ningombam Sanjib Meitei
A1  - Snigdha Banerjee
T1  - Interpretation support for multistage MS: A mathematical method for theoretical generation of glycan fragments and calculation of their masses
JO  - PROTEOMICS
Y1  - 2007
SP  - 2530
EP  - 2540
VL  - 7
IS  - 15
UR  - http://dx.doi.org/10.1002/pmic.200600667
ER  - 

TY  - JOUR
A1  - Scott MS
A1  - Barton GJ
T1  - Probabilistic prediction and ranking of human protein-protein interactions
JO  - 
Y1  - 
SP  - 
EP  - 
VL  - 
IS  - 
UR  - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17615067&dopt=Abstract
ER  - 

TY  - JOUR
A1  - Martin Skold
A1  - Tobias Ryden
A1  - Viktoria Samuelsson
A1  - Charlotte Bratt
A1  - Lars Ekblad
A1  - Hakan Olsson
A1  - Bo Baldetorp
T1  - Regression analysis and modelling of data acquisition for SELDI-TOF mass spectrometry
JO  - Bioinformatics
Y1  - 2007
SP  - 1401
EP  - 1409
VL  - 23
IS  - 11
UR  - http://bioinformatics.oxfordjournals.org/cgi/content/abstract/23/11/1401?etoc
ER  - 

TY  - JOUR
A1  - Shin H
A1  - Sheu B
A1  - Joseph M
A1  - Markey MK
T1  - Guilt-by-association feature selection: Identifying biomarkers from proteomic profiles
JO  - J Biomed Inform
Y1  - 2007/04/14
SP  - 
EP  - 
VL  - 
IS  - 
UR  - http://dx.doi.org/10.1016/j.jbi.2007.04.003
ER  -