TY - JOUR A1 - Ping Ma T1 - Bayesian Inference for Gene Expression and Proteomics JO - Brief Bioinform Y1 - 2007 SP - 376 EP - 377 VL - 8 IS - 5 UR - http://dx.doi.org/10.1093/bib/bbm022 ER - TY - JOUR A1 - Miroslava Stastna A1 - Ashley Behrens A1 - Guillermo Noguera A1 - Samantha Herretes A1 - Peter McDonnell A1 - Jennifer E. Van Eyk T1 - Proteomics of the aqueous humor in healthy New Zealand rabbits JO - PROTEOMICS Y1 - 2007 SP - 4358 EP - 4375 VL - 7 IS - 23 UR - http://dx.doi.org/10.1002/pmic.200700300 ER - TY - JOUR A1 - An Chi A1 - Lissette Valenzuela A1 - Simon Beard A1 - Aaron J. Mackey A1 - Jeffrey Shabanowitz A1 - Donald F. Hunt A1 - Carlos A. Jerez T1 - Periplasmic Proteins of the Extremophile Acidithiobacillus ferrooxidans: A High Throughput Proteomics Analysis JO - Mol Cell Proteomics Y1 - 2007 SP - 2239 EP - 2251 VL - 6 IS - 12 UR - http://www.mcponline.org/cgi/content/abstract/6/12/2239?etoc ER - TY - JOUR A1 - Foster LJ A1 - Chan QW T1 - Lipid raft proteomics: more than just detergent-resistant membranes JO - Subcell Biochem Y1 - 2007 SP - 35 EP - 47 VL - 43 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17953390&dopt=Abstract ER - TY - JOUR A1 - Urs Lewandrowski A1 - Rene P. Zahedi A1 - Jan Moebius A1 - Ulrich Walter A1 - Albert Sickmann T1 - Enhanced N-Glycosylation Site Analysis of Sialoglycopeptides by Strong Cation Exchange Prefractionation Applied to Platelet Plasma Membranes JO - Mol Cell Proteomics Y1 - 2007 SP - 1933 EP - 1941 VL - 6 IS - 11 UR - http://www.mcponline.org/cgi/content/abstract/6/11/1933?etoc ER - TY - JOUR A1 - Alison M. Winger A1 - Nicolas L. Taylor A1 - Joshua L. Heazlewood A1 - David A. Day A1 - A. Harvey Millar T1 - Identification of intra- and intermolecular disulphide bonding in the plant mitochondrial proteome by diagonal gel electrophoresis JO - PROTEOMICS Y1 - 2007 SP - 4158 EP - 4170 VL - 7 IS - 22 UR - http://dx.doi.org/10.1002/pmic.200700209 ER - TY - JOUR A1 - Li Y A1 - Liu Y A1 - Tang J A1 - Lin H A1 - Yao N A1 - Shen X A1 - Deng C A1 - Yang P A1 - Zhang X T1 - Fe(3)O(4)@Al(2)O(3) magnetic core-shell microspheres for rapid and highly specific capture of phosphopeptides with mass spectrometry analysis JO - J Chromatogr A Y1 - 2007 SP - 57 EP - 71 VL - 1172 IS - 1 UR - http://dx.doi.org/10.1016/j.chroma.2007.09.062 ER - TY - JOUR A1 - Julien Saint-Guirons A1 - Elton Zeqiraj A1 - Udo Schumacher A1 - Pamela Greenwell A1 - Miriam Dwek T1 - Proteome analysis of metastatic colorectal cancer cells recognized by the lectin Helix pomatia agglutinin (HPA) JO - PROTEOMICS Y1 - 2007 SP - 4082 EP - 4089 VL - 7 IS - 22 UR - http://dx.doi.org/10.1002/pmic.200700434 ER - TY - JOUR A1 - Eszter Csanky A1 - Petra Olivova A1 - Eva Rajnavolgyi A1 - William Hempel A1 - Nadege Tardieu A1 - Elesne Toth Katalin A1 - Anne Jullien A1 - Carole Malderez-Bloes A1 - Mariana Kuras A1 - Manuel X. Duval A1 - Laszlo Nagy A1 - Beata Scholtz A1 - William Hancock A1 - Barry Karger A1 - András Guttman A1 - Laszlo Taka T1 - Monoclonal antibody proteomics: Discovery and prevalidation of chronic obstructive pulmonary disease biomarkers in a single step JO - ELECTROPHORESIS Y1 - 2007 SP - 4401 EP - 4406 VL - 28 IS - 23 UR - http://dx.doi.org/10.1002/elps.200700256 ER - TY - JOUR A1 - Shaojun Dai A1 - Tai Wang A1 - Xiufeng Yan A1 - Sixue Chen T1 - Proteomics of Pollen Development and Germination JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2007 SP - 4556 EP - 4563 VL - 6 IS - 12 UR - http://dx.doi.org/10.1021/pr070474y ER - TY - JOUR A1 - Wannes D'Hertog A1 - Lut Overbergh A1 - Kasper Lage A1 - Gabriela Bonfim Ferreira,Michael Maris A1 - Conny Gysemans A1 - Daisy Flamez A1 - Alessandra Kupper Cardozo A1 - Gert Van den Bergh A1 - Liliane Schoofs A1 - Lut Arckens A1 - Yves Moreau A1 - Daniel Aaen Hansen A1 - Decio Laks Eizirik A1 - Ettienne W T1 - Proteomics Analysis of Cytokine-induced Dysfunction and Death in Insulin-producing INS-1E Cells: New Insights into the Pathways Involved JO - Mol Cell Proteomics Y1 - 2007 SP - 2180 EP - 2199 VL - 6 IS - 12 UR - http://www.mcponline.org/cgi/content/abstract/6/12/2180?etoc ER - TY - JOUR A1 - Hekmat O A1 - Florizone C A1 - Kim YW A1 - Eltis LD A1 - Warren RA A1 - Withers SG T1 - Specificity Fingerprinting of Retaining beta-1,4-Glycanases in the Cellulomonas fimi Secretome Using Two Fluorescent Mechanism-Based Probes JO - Chembiochem Y1 - 2007 SP - 2125 EP - 2132 VL - 8 IS - 17 UR - http://dx.doi.org/10.1002/cbic.200700481 ER - TY - JOUR A1 - Garcia Osuna E A1 - Murphy RF T1 - Automated, systematic determination of protein subcellular location using fluorescence microscopy JO - Subcell Biochem Y1 - 2007 SP - 263 EP - 76 VL - 43 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17953398&dopt=Abstract ER - TY - JOUR A1 - Jellouli N A1 - Ben Jouira H A1 - Skouri H A1 - Ghorbel A A1 - Gourgouri A A1 - Mliki A T1 - Proteomic analysis of Tunisian grapevine cultivar Razegui under salt stress JO - J Plant Physiol Y1 - 2007/10/15 SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.jplph.2007.02.009 ER - TY - JOUR A1 - Jean-Philippe Godin A1 - Laurent-Bernard Fay A1 - Gérard Hopfgartner T1 - Liquid chromatography combined with mass spectrometry for 13C isotopic analysis in life science research JO - Mass Spectrometry Reviews Y1 - 2007 SP - 751 EP - 774 VL - 26 IS - 6 UR - http://dx.doi.org/10.1002/mas.20149 ER - TY - JOUR A1 - Alves G A1 - Ogurtsov AY A1 - Yu YK T1 - RAId DbS: Peptide Identification using Database Searches with Realistic Statistics JO - Y1 - SP - EP - VL - IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17961253&dopt=Abstract ER - TY - JOUR A1 - Rappel C A1 - Schaumloffel D T1 - The role of sulfur and sulfur isotope dilution analysis in quantitative protein analysis JO - Anal Bioanal Chem Y1 - 2007/11/6 SP - EP - VL - IS - UR - http://dx.doi.org/10.1007/s00216-007-1607-2 ER - TY - JOUR A1 - Cheng Y A1 - Zhang J A1 - Li Y A1 - Wang Y A1 - Gong J T1 - Proteome analysis of human gastric cardia adenocarcinoma by laser capture microdissection JO - Y1 - SP - EP - VL - IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17927838&dopt=Abstract ER - TY - JOUR A1 - Lukas M. Orre A1 - Maria Pernemalm A1 - Johan Lengqvist A1 - Rolf Lewensohn A1 - Janne Lehtio T1 - Up-regulation, Modification, and Translocation of S100A6 Induced by Exposure to Ionizing Radiation Revealed by Proteomics Profiling JO - Mol Cell Proteomics Y1 - 2007 SP - 2122 EP - 2131 VL - 6 IS - 12 UR - http://www.mcponline.org/cgi/content/abstract/6/12/2122?etoc ER - TY - JOUR A1 - Martin S A1 - Brown WM A1 - Faulon JL T1 - Using Product Kernels to Predict Protein Interactions JO - Adv Biochem Eng Biotechnol Y1 - 2007/10/6 SP - EP - VL - IS - UR - http://dx.doi.org/10.1007/10_2007_084 ER - TY - JOUR A1 - Abdulilah A. Dawoud A1 - Hetal A. Sarvaiya A1 - Iulia M. Lazar T1 - Microfluidic platform with mass spectrometry detection for the analysis of phosphoproteins JO - ELECTROPHORESIS Y1 - 2007 SP - 4645 EP - 4660 VL - 28 IS - 24 UR - http://dx.doi.org/10.1002/elps.200700355 ER - TY - JOUR A1 - Eleni Skordi A1 - Ivan K. S. Yap A1 - Sandrine P. Claus A1 - François-Pierre J. 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Nicholson T1 - Analysis of Time-Related Metabolic Fluctuations Induced by Ethionine in the Rat JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2007 SP - 4572 EP - 4581 VL - 6 IS - 12 UR - http://dx.doi.org/10.1021/pr070268q ER - TY - JOUR A1 - Nilka Lineth Torres A1 - Kyoungwon Cho A1 - Junko Shibato A1 - Misato Hirano A1 - Akihiro Kubo A1 - Yoshinori Masuo A1 - Hitoshi Iwahashi A1 - Nam-Soo Jwa A1 - Ganesh Kumar Agrawal A1 - Randeep Rakwal T1 - Gel-based proteomics reveals potential novel protein markers of ozone stress in leaves of cultivated bean and maize species of Panama JO - ELECTROPHORESIS Y1 - 2007 SP - 4369 EP - 4381 VL - 28 IS - 23 UR - http://dx.doi.org/10.1002/elps.200700219 ER - TY - JOUR A1 - Garbett NC A1 - Miller JJ A1 - Jenson AB A1 - Chaires JB T1 - Calorimetry outside the box: a new window into the plasma proteome JO - Biophys J Y1 - 2007/10/19 SP - EP - VL - IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17951300&dopt=Abstract ER - TY - JOUR A1 - Hiroyuki Kaji A1 - Jun-ichi Kamiie A1 - Hirotaka Kawakami A1 - Kazuki Kido A1 - YoshioYamauchi A1 - Takashi Shinkawa A1 - Masato Taoka A1 - Nobuhiro Takahashi A1 - Toshiaki Isobe T1 - Proteomics Reveals N-Linked Glycoprotein Diversity in Caenorhabditis elegans and Suggests an Atypical Translocation Mechanism for Integral Membrane Proteins JO - Mol Cell Proteomics Y1 - 2007 SP - 2100 EP - 2109 VL - 6 IS - 12 UR - http://www.mcponline.org/cgi/content/abstract/6/12/2100?etoc ER - TY - JOUR A1 - Kiehntopf M A1 - Siegmund R A1 - Deufel T T1 - Use of SELDI-TOF mass spectrometry for identification of new biomarkers: potential and limitations JO - Clin Chem Lab Med Y1 - 2007 SP - 1435 EP - 49 VL - 45 IS - 11 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17970700&dopt=Abstract ER - TY - JOUR A1 - Andreas Guttman A1 - Laszio Takacs T1 - Biomarker Discovery and Related Topics JO - Y1 - SP - EP - VL - IS - UR - http://dx.doi.org/10.1002/elps.200790086 ER - TY - JOUR A1 - Zhang Y A1 - Ma YF A1 - Qi SW A1 - Meng B A1 - Chaudhry MT A1 - Liu SQ A1 - Liu SJ T1 - Responses to arsenate stress by Comamonas sp. strain CNB-1 at genetic and proteomic levels JO - Microbiology Y1 - 2007 SP - 3713 EP - 3721 VL - 153 IS - Pt 11 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17975079&dopt=Abstract ER - TY - JOUR A1 - Sanchez A A1 - Ramos Y A1 - Solano Y A1 - Gonzalez LJ A1 - Betancourt L A1 - Gil J A1 - Padron G A1 - Besada V T1 - Letter: Specific isotope labeling for the identification of free N-terminal peptide of proteins separated by polyacrylamide gel electrophoresis JO - Eur J Mass Spectrom (Chichester, Eng) Y1 - 2007 SP - 307 EP - 9 VL - 13 IS - 4 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17942980&dopt=Abstract ER - TY - JOUR A1 - Lunbiao Cui A1 - Yubang Wang A1 - Yuan Shi A1 - Zhengdong Zhang A1 - Yankai Xia A1 - Hong Sun A1 - Shouling Wang A1 - Jianfeng Chen A1 - Wei Zhang A1 - Qiang Lu A1 - Ling Song A1 - Qingyi Wei A1 - Ruiwen Zhang A1 - Xinru Wang T1 - Overexpression of annexin a1 induced by terephthalic acid calculi in rat bladder cancer JO - PROTEOMICS Y1 - 2007 SP - 4192 EP - 4202 VL - 7 IS - 22 UR - http://dx.doi.org/10.1002/pmic.200700582 ER - TY - JOUR A1 - Wu TF A1 - Hsu CY A1 - Huang HS A1 - Chou SP A1 - Wu H T1 - Proteomic Analysis of Pycnogenol Effects in RAW 264.7 Macrophage Reveals Induction of Cathepsin D Expression and Enhancement of Phagocytosis JO - J Agric Food Chem Y1 - 2007 SP - 9784 EP - 9791 VL - 55 IS - 24 UR - http://dx.doi.org/10.1021/jf070453o ER - TY - JOUR A1 - Emmanuelle Com A1 - Chann Lagadec A1 - Adeline Page A1 - Ikram El Yazidi-Belkoura,Christian Slomianny A1 - Ambre Spencer A1 - Djilali Hammache A1 - Brian B. Rudkin A1 - Hubert Hondermarck T1 - Nerve Growth Factor Receptor TrkA Signaling in Breast Cancer Cells Involves Ku70 to Prevent Apoptosis JO - Mol Cell Proteomics Y1 - 2007 SP - 1842 EP - 1854 VL - 6 IS - 11 UR - http://www.mcponline.org/cgi/content/abstract/6/11/1842?etoc ER - TY - JOUR A1 - Cristina Di Poto A1 - Paolo Iadarola A1 - Roberta Salvini A1 - Ileana Passadore A1 - Cristina Cereda A1 - Mauro Ceroni A1 - Anna Maria Bardoni T1 - Optimizing separation efficiency of 2-DE procedures for visualization of different superoxide dismutase forms in a cellular model of amyotrophic lateral sclerosis JO - ELECTROPHORESIS Y1 - 2007 SP - 4340 EP - 4347 VL - 28 IS - 23 UR - http://dx.doi.org/10.1002/elps.200700162 ER - TY - JOUR A1 - Kim SG A1 - Kim ST A1 - Kang SY A1 - Wang Y A1 - Kim W A1 - Kang KY T1 - Proteomic analysis of reactive oxygen species (ROS)-related proteins in rice roots JO - Plant Cell Rep Y1 - 2007/10/12 SP - EP - VL - IS - UR - http://dx.doi.org/10.1007/s00299-007-0441-5 ER - TY - JOUR A1 - Iyer LM A1 - Anantharaman V A1 - Wolf MY A1 - Aravind L T1 - Comparative genomics of transcription factors and chromatin proteins in parasitic protists and other eukaryotes JO - Int J Parasitol Y1 - 2007/09/15 SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.ijpara.2007.07.018 ER - TY - JOUR A1 - Xumin Zhang A1 - Juanying Ye A1 - Ole N. Jensen A1 - Peter Roepstorff T1 - Highly Efficient Phosphopeptide Enrichment by Calcium Phosphate Precipitation Combined with Subsequent IMAC Enrichment JO - Mol Cell Proteomics Y1 - 2007 SP - 2032 EP - 2042 VL - 6 IS - 11 UR - http://www.mcponline.org/cgi/content/abstract/6/11/2032?etoc ER - TY - JOUR A1 - Chenwei Liu A1 - Nancy Shea A1 - Sally Rucker A1 - Linda Harvey A1 - Paul Russo A1 - Richard Saul A1 - Mary F. Lopez A1 - Alvydas Mikulskis A1 - Scott Kuzdzal A1 - Eva Golenko A1 - David Fishman A1 - Eric Vonderheid A1 - Susan Booher A1 - Edward W. Cowen A1 - Sam T. Hwang A1 - Gordon R. Whiteley T1 - Proteomic patterns for classification of ovarian cancer and CTCL serum samples utilizing peak pairs indicative of post-translational modifications JO - PROTEOMICS Y1 - 2007 SP - 4045 EP - 4052 VL - 7 IS - 22 UR - http://dx.doi.org/10.1002/pmic.200601044 ER - TY - JOUR A1 - Scott Bidlingmaier and Bin Liu T1 - Interrogating Yeast Surface-displayed Human Proteome to Identify Small Molecule-binding Proteins JO - Mol Cell Proteomics Y1 - 2007 SP - 2012 EP - 2020 VL - 6 IS - 11 UR - http://www.mcponline.org/cgi/content/abstract/6/11/2012?etoc ER - TY - JOUR A1 - Koenig S A1 - Mehlich AM A1 - Ackermann D A1 - Hamid ME A1 - Saeed NS A1 - Mukhtar M A1 - Hassan ME T1 - Homologous housekeeping proteins in Nocardia - the NoDaMS proteomic database JO - Front Biosci Y1 - 2008 SP - 842 EP - 55 VL - 13 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17981593&dopt=Abstract ER - TY - JOUR A1 - Christian Pasquali A1 - Dominique Bertschy-Meier A1 - Christian Chabert A1 - Marie-Laure Curchod A1 - Christian Arod A1 - Randy Booth A1 - Karl Mechtler A1 - Francis Vilbois A1 - Ioannis Xenarios A1 - Colin G. 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Prestwich A1 - Montserrat Camps A1 - Christian Rommel T1 - A Chemical Proteomics Approach to Phosphatidylinositol 3-Kinase Signaling in Macrophages JO - Mol Cell Proteomics Y1 - 2007 SP - 1829 EP - 1841 VL - 6 IS - 11 UR - http://www.mcponline.org/cgi/content/abstract/6/11/1829?etoc ER - TY - JOUR A1 - Gharbi S A1 - Garzon B A1 - Gayarre J A1 - Timms J A1 - Perez-Sala D T1 - Study of protein targets for covalent modification by the antitumoral and anti-inflammatory prostaglandin PGA(1): focus on vimentin JO - J Mass Spectrom Y1 - 2007 SP - 1474 EP - 1484 VL - 42 IS - 11 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17960581&dopt=Abstract ER - TY - JOUR A1 - Afjehi-Sadat L A1 - Lubec G T1 - Identification of enzymes and activity from two-dimensional gel electrophoresis JO - Nat Protoc Y1 - 2007 SP - 2318 EP - 24 VL - 2 IS - 10 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17947972&dopt=Abstract ER - TY - JOUR A1 - Morten Krogh A1 - Yingchun Liu A1 - Sofia Waldemarson A1 - Barbara Valastro A1 - Peter James T1 - Analysis of DIGE data using a linear mixed model allowing for protein-specific dye effects JO - PROTEOMICS Y1 - 2007 SP - 4235 EP - 4244 VL - 7 IS - 23 UR - http://dx.doi.org/10.1002/pmic.200700339 ER - TY - JOUR A1 - Mikkel Nissum A1 - Sabine Kuhfuss A1 - Monika Hauptmann A1 - Christian Obermaier A1 - Ute Sukop A1 - Robert Wildgruber A1 - Gerhard Weber A1 - Christoph Eckerskorn A1 - Johan Malmström T1 - Two-dimensional separation of human plasma proteins using iterative free-flow electrophoresis JO - PROTEOMICS Y1 - 2007 SP - 4218 EP - 4227 VL - 7 IS - 23 UR - http://dx.doi.org/10.1002/pmic.200700166 ER - TY - JOUR A1 - Shuang Lin A1 - Zhenxin Lin A1 - Guoping Yao A1 - Chunhui Deng A1 - Pengyuan Yang A1 - Xiangmin Zhang T1 - Development of microwave-assisted protein digestion based on trypsin-immobilized magnetic microspheres for highly efficient proteolysis followed by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry analysis JO - Rapid Communications in Mass Spectrometry Y1 - 2007 SP - 3910 EP - 3918 VL - 21 IS - 23 UR - http://dx.doi.org/10.1002/rcm.3283 ER - TY - JOUR A1 - de Groot MJ A1 - Daran-Lapujade P A1 - van Breukelen B A1 - Knijnenburg TA A1 - de Hulster EA A1 - Reinders MJ A1 - Pronk JT A1 - Heck AJ A1 - Slijper M T1 - Quantitative proteomics and transcriptomics of anaerobic and aerobic yeast cultures reveals post-transcriptional regulation of key cellular processes JO - Microbiology Y1 - 2007 SP - 3864 EP - 3878 VL - 153 IS - Pt 11 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17975095&dopt=Abstract ER - TY - JOUR A1 - Olver C A1 - Vidal M T1 - Proteomic analysis of secreted exosomes JO - Subcell Biochem Y1 - 2007 SP - 99 EP - 131 VL - 43 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17953393&dopt=Abstract ER - TY - JOUR A1 - Zhu J A1 - Alvarez S A1 - Marsh E A1 - Lenoble ME A1 - Cho IJ A1 - Sivaguru M A1 - Chen S A1 - Nguyen HT A1 - Wu Y A1 - Schachtman DP A1 - Sharp RE T1 - Cell Wall Proteome in the Maize Primary Root Elongation Zone. II. Region-Specific Changes in Water Soluble and Lightly Ionically-Bound Proteins under Water Deficit JO - Plant Physiol Y1 - 2007 SP - 1533 EP - 48 VL - 145 IS - 4 UR - http://dx.doi.org/10.1104/pp.107.107250 ER - TY - JOUR A1 - Yamaguchi Y A1 - Miyagi Y A1 - Baba H T1 - Two-dimensional electrophoresis with cationic detergents, a powerful tool for the proteomic analysis of myelin proteins. Part 1: Technical aspects of electrophoresis JO - J Neurosci Res Y1 - 2007/10/25 SP - EP - VL - IS - UR - http://dx.doi.org/10.1002/jnr.21547 ER - TY - JOUR A1 - Matt P A1 - Fu Z A1 - Carrel T A1 - Huso DL A1 - Dirnhofer S A1 - Lefkovits I A1 - Zerkowski HR A1 - Van Eyk JE T1 - Proteomic alterations in heat shock protein 27 and identification of phosphoproteins in ascending aortic aneurysm associated with bicuspid and tricuspid aortic valve JO - J Mol Cell Cardiol Y1 - 2007 SP - 792 EP - 801 VL - 43 IS - 6 UR - http://dx.doi.org/10.1016/j.yjmcc.2007.08.011 ER - TY - JOUR A1 - Negroni L A1 - Samson M A1 - Guigonis JM A1 - Rossi B A1 - Pierrefite-Carle V A1 - Baudoin C T1 - Treatment of colon cancer cells using the cytosine deaminase/5-fluorocytosine suicide system induces apoptosis, modulation of the proteome, and Hsp90{beta} phosphorylation JO - Mol Cancer Ther Y1 - 2007 SP - 2747 EP - 56 VL - 6 IS - 10 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17938268&dopt=Abstract ER - TY - JOUR A1 - Rosenfeld RG T1 - Pharmacogenomics and pharmacoproteomics in the evaluation and management of short stature JO - Eur J Endocrinol Y1 - 2007 SP - S27 EP - 31 VL - 157 IS - Suppl 1 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17785693&dopt=Abstract ER - TY - JOUR A1 - He QY A1 - He QZ A1 - Deng XC A1 - Yao L A1 - Meng E A1 - Liu ZH A1 - Liang SP T1 - ATDB: a uni-database platform for animal toxins JO - Nucleic Acids Res Y1 - 2007/10/11 SP - EP - VL - IS - UR - http://dx.doi.org/10.1093/nar/gkm832 ER - TY - JOUR A1 - Sébastien Voisin A1 - David C. Watson A1 - Luc Tessier A1 - Wen Ding A1 - Simon Foote A1 - Smita Bhatia A1 - John F. Kelly A1 - N. Martin Young T1 - The cytoplasmic phosphoproteome of the Gram-negative bacterium Campylobacter jejuni: Evidence for modification by unidentified protein kinases JO - PROTEOMICS Y1 - 2007 SP - 4338 EP - 4348 VL - 7 IS - 23 UR - http://dx.doi.org/10.1002/pmic.200700483 ER - TY - JOUR A1 - Cristina Di Poto A1 - Paolo Iadarola A1 - Anna Maria Bardoni A1 - Ileana Passadore A1 - Sofia Giorgetti A1 - Cristina Cereda A1 - Maria Teresa Carrě A1 - Mauro Ceroni A1 - Roberta Salvini T1 - 2-DE and MALDI-TOF-MS for a comparative analysis of proteins expressed in different cellular models of amyotrophic lateral sclerosis JO - ELECTROPHORESIS Y1 - 2007 SP - 4320 EP - 4329 VL - 28 IS - 23 UR - http://dx.doi.org/10.1002/elps.200700455 ER - TY - JOUR A1 - Lucien F. Harthoorn A1 - Raymond G. Schipper A1 - Arnoud Loof A1 - Pieter F. G. Vereijken A1 - Waander L. Van Heerde A1 - Eric Dransfield T1 - Salivary biomarkers associated with perceived satiety and body mass in humans JO - PROTEOMICS - CLINICAL APPLICATIONS Y1 - 2007 SP - 1637 EP - 1650 VL - 1 IS - 12 UR - http://dx.doi.org/10.1002/prca.200700448 ER - TY - JOUR A1 - Bruce S. Seal A1 - Kelli L. Hiett A1 - Robin L. Kuntz A1 - Rebekah Woolsey A1 - Kathleen M. Schegg A1 - Mary Ard A1 - Alain Stintzi T1 - Proteomic Analyses of a Robust versus a Poor Chicken Gastrointestinal Colonizing Isolate of Campylobacter jejuni JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2007 SP - 4582 EP - 4591 VL - 6 IS - 12 UR - http://dx.doi.org/10.1021/pr070356a ER - TY - JOUR A1 - Cline MS A1 - Smoot M A1 - Cerami E A1 - Kuchinsky A A1 - Landys N A1 - Workman C A1 - Christmas R A1 - Avila-Campilo I A1 - Creech M A1 - Gross B A1 - Hanspers K A1 - Isserlin R A1 - Kelley R A1 - Killcoyne S A1 - Lotia S A1 - Maere S A1 - Morris J A1 - Ono K A1 - Pavlovic V A1 - Pico AR A1 - Vailaya A A1 - Wang PL A1 - Adler A A1 - Conklin BR, T1 - Integration of biological networks and gene expression data using Cytoscape JO - Nat Protoc Y1 - 2007 SP - 2366 EP - 82 VL - 2 IS - 10 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17947979&dopt=Abstract ER - TY - JOUR A1 - Peter Horvatovich A1 - Natalia I. Govorukhina A1 - Theo H. Reijmers A1 - Ate G. J. van der Zee A1 - Frank Suits A1 - Rainer Bischoff T1 - Chip-LC-MS for label-free profiling of human serum JO - ELECTROPHORESIS Y1 - 2007 SP - 4493 EP - 4505 VL - 28 IS - 23 UR - http://dx.doi.org/10.1002/elps.200600719 ER - TY - JOUR A1 - Hu S A1 - Wang J A1 - Meijer J A1 - Ieong S A1 - Xie Y A1 - Yu T A1 - Zhou H A1 - Henry S A1 - Vissink A A1 - Pijpe J A1 - Kallenberg C A1 - Elashoff D A1 - Loo JA A1 - Wong DT T1 - Salivary proteomic and genomic biomarkers for primary Sjogren's syndrome JO - Arthritis Rheum Y1 - 2007 SP - 3588 EP - 3600 VL - 56 IS - 11 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17968930&dopt=Abstract ER - TY - JOUR A1 - Michael T. Davis A1 - Paul Auger A1 - Chris Spahr A1 - Scott D. Patterson T1 - Cancer biomarker discovery via low molecular weight serum proteome profiling - Where is the tumor? JO - PROTEOMICS - CLINICAL APPLICATIONS Y1 - 2007 SP - 1545 EP - 1558 VL - 1 IS - 12 UR - http://dx.doi.org/10.1002/prca.200700141 ER - TY - JOUR A1 - Sun-Hee Heo A1 - Seung-Jin Lee A1 - Hyun-Mo Ryoo A1 - Jae-Yong Park A1 - Je-Yoel Cho T1 - Identification of putative serum glycoprotein biomarkers for human lung adenocarcinoma by multilectin affinity chromatography and LC-MS/MS JO - PROTEOMICS Y1 - 2007 SP - 4292 EP - 4302 VL - 7 IS - 23 UR - http://dx.doi.org/10.1002/pmic.200700433 ER - TY - JOUR A1 - Taeoh Kim A1 - Sang Jin Kim A1 - Kyunggon Kim A1 - Un-Beom Kang A1 - Cheolju Lee A1 - Kyong Soo Park A1 - Hyeong Gon Yu A1 - Youngsoo Kim T1 - Profiling of vitreous proteomes from proliferative diabetic retinopathy and nondiabetic patients JO - PROTEOMICS Y1 - 2007 SP - 4203 EP - 4215 VL - 7 IS - 22 UR - http://dx.doi.org/10.1002/pmic.200700745 ER - TY - JOUR A1 - Esther Llop A1 - Ricardo Gutiérrez Gallego A1 - Viviana Belalcazar A1 - Gerrit J. Gerwig A1 - Johannis P. Kamerling A1 - Jordi Segura A1 - José A. Pascual T1 - Evaluation of protein N-glycosylation in 2-DE: Erythropoietin as a study case JO - PROTEOMICS Y1 - 2007 SP - 4278 EP - 4291 VL - 7 IS - 23 UR - http://dx.doi.org/10.1002/pmic.200700572 ER - TY - JOUR A1 - Gendler K A1 - Paulsen T A1 - Napoli C T1 - ChromDB: The Chromatin Database JO - Nucleic Acids Res Y1 - 2007/10/16 SP - EP - VL - IS - UR - http://dx.doi.org/10.1093/nar/gkm768 ER - TY - JOUR A1 - Desrosiers RR A1 - Beaulieu E A1 - Buchanan M A1 - Beliveau R T1 - Proteomic analysis of human plasma proteins by two-dimensional gel electrophoresis and by antibody arrays following depletion of high-abundance proteins JO - Cell Biochem Biophys Y1 - 2007 SP - 182 EP - 95 VL - 49 IS - 3 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17952643&dopt=Abstract ER - TY - JOUR A1 - van den Berg BH A1 - Harris T A1 - McCarthy FM A1 - Lamont SJ A1 - Burgess SC T1 - Non-electrophoretic differential detergent fractionation proteomics using frozen whole organs JO - Rapid Commun Mass Spectrom Y1 - 2007 SP - 3905 EP - 3909 VL - 21 IS - 23 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17990261&dopt=Abstract ER - TY - JOUR A1 - Heazlewood JL A1 - Durek P A1 - Hummel J A1 - Selbig J A1 - Weckwerth W A1 - Walther D A1 - Schulze WX T1 - PhosPhAt: a database of phosphorylation sites in Arabidopsis thaliana and a plant-specific phosphorylation site predictor JO - Nucleic Acids Res Y1 - 2007/11/4 SP - EP - VL - IS - UR - http://dx.doi.org/10.1093/nar/gkm812 ER - TY - JOUR A1 - Ky CL A1 - de Lorgeril J A1 - Hirtz C A1 - Sommerer N A1 - Rossignol M A1 - Bonhomme F T1 - The effect of environmental salinity on the proteome of the sea bass (Dicentrarchus labrax L.) JO - Anim Genet Y1 - 2007 SP - 601 EP - 8 VL - 38 IS - 6 UR - http://dx.doi.org/10.1111/j.1365-2052.2007.01652.x ER - TY - JOUR A1 - Angelo Zinellu A1 - Salvatore Sotgia A1 - Bastianina Scanu A1 - Marilena Formato A1 - Luca Deiana A1 - Ciriaco Carru T1 - Assessment of protein-incorporated arginine methylation in biological specimens by CZE UV-detection JO - ELECTROPHORESIS Y1 - 2007 SP - 4452 EP - 4458 VL - 28 IS - 23 UR - http://dx.doi.org/10.1002/elps.200700153 ER - TY - JOUR A1 - Virginie Brun A1 - Alain Dupuis A1 - Annie Adrait A1 - Marlene Marcellin A1 - Damien Thomas A1 - Magali Court A1 - Francois Vandenesch A1 - Jerome Garin T1 - Isotope-labeled Protein Standards: Toward Absolute Quantitative Proteomics JO - Mol Cell Proteomics Y1 - 2007 SP - 2139 EP - 2149 VL - 6 IS - 12 UR - http://www.mcponline.org/cgi/content/abstract/6/12/2139?etoc ER - TY - JOUR A1 - Hu S A1 - Wong DT T1 - Oral cancer proteomics JO - Curr Opin Mol Ther Y1 - 2007 SP - 467 EP - 76 VL - 9 IS - 5 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17932810&dopt=Abstract ER - TY - JOUR A1 - Meyrick BO A1 - Friedman DB A1 - Billheimer DD A1 - Cogan JD A1 - Prince MA A1 - Phillips JA A1 - Loyd JE T1 - Proteomics of Transformed Lymphocytes from a Family with Familial Pulmonary Arterial Hypertension JO - Am J Respir Crit Care Med Y1 - 2007/10/11 SP - EP - VL - IS - UR - http://dx.doi.org/10.1164/rccm.200703-499OC ER - TY - JOUR A1 - Liang Qiao A1 - Christophe Roussel A1 - Jingjing Wan A1 - Pengyuan Yang A1 - Hubert H. Girault A1 - Baohong Liu T1 - Specific On-Plate Enrichment of Phosphorylated Peptides for Direct MALDI-TOF MS Analysis JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2007 SP - 4763 EP - 4769 VL - 6 IS - 12 UR - http://dx.doi.org/10.1021/pr0705284 ER - TY - JOUR A1 - Guillaume L. Erny A1 - Maria Luisa Marina A1 - Alejandro Cifuentes T1 - CE-MS of zein proteins from conventional and transgenic maize JO - ELECTROPHORESIS Y1 - 2007 SP - 4192 EP - 4201 VL - 28 IS - 22 UR - http://dx.doi.org/10.1002/elps.200700323 ER - TY - JOUR A1 - Jiyang Zhang A1 - Jianqi Li A1 - Hongwei Xie A1 - Yunping Zhu A1 - Fuchu He T1 - A new strategy to filter out false positive identifications of peptides in SEQUEST database search results JO - PROTEOMICS Y1 - 2007 SP - 4036 EP - 4044 VL - 7 IS - 22 UR - http://dx.doi.org/10.1002/pmic.200600929 ER - TY - JOUR A1 - Saleem A. Bokhari A1 - Xiang-Yuan Wan A1 - Yi-Wei Yang A1 - Lu Zhou A1 - Wan-Li Tang A1 - Jin-Yuan Liu T1 - Proteomic Response of Rice Seedling Leaves to Elevated CO2 Levels JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2007 SP - 4624 EP - 4633 VL - 6 IS - 12 UR - http://dx.doi.org/10.1021/pr070524z ER - TY - JOUR A1 - Fa-Yun Che A1 - Xin Zhang A1 - Iryna Berezniuk A1 - Myrasol Callaway A1 - Jihyeon Lim A1 - Lloyd D. Fricker T1 - Optimization of Neuropeptide Extraction from the Mouse Hypothalamus JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2007 SP - 4667 EP - 4676 VL - 6 IS - 12 UR - http://dx.doi.org/10.1021/pr060690r ER - TY - JOUR A1 - Martini J A1 - Hellmich W A1 - Greif D A1 - Becker A A1 - Merkle T A1 - Ros R A1 - Ros A A1 - Toensing K A1 - Anselmetti D T1 - Systems nanobiology: from quantitative single molecule biophysics to microfluidic-based single cell analysis JO - Subcell Biochem Y1 - 2007 SP - 301 EP - 21 VL - 43 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17953400&dopt=Abstract ER - TY - JOUR A1 - Franz F. Roos A1 - Riko Jacob A1 - Jonas Grossmann A1 - Bernd Fischer A1 - Joachim M. Buhmann A1 - Wilhelm Gruissem A1 - Sacha Baginsky A1 - Peter Widmayer T1 - PepSplice: cache-efficient search algorithms for comprehensive identification of tandem mass spectra JO - Bioinformatics Y1 - 2007 SP - 3016 EP - 3023 VL - 23 IS - 22 UR - http://bioinformatics.oxfordjournals.org/cgi/content/abstract/23/22/3016?etoc ER - TY - JOUR A1 - Lewandrowski U A1 - Zahedi RP A1 - Moebius J A1 - Sickmann A T1 - Functional proteome analysis of human platelets JO - Hamostaseologie Y1 - 2007 SP - 241 EP - 245 VL - 27 IS - 4 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17938761&dopt=Abstract ER - TY - JOUR A1 - Anton Ressine A1 - Irina Corin A1 - Kerstin Järĺs A1 - Ginevra Guanti A1 - Cristiano Simone A1 - György Marko-Varga A1 - Thomas Laurell T1 - Porous silicon surfaces - A candidate substrate for reverse protein arrays in cancer biomarker detection JO - ELECTROPHORESIS Y1 - 2007 SP - 4407 EP - 4415 VL - 28 IS - 23 UR - http://dx.doi.org/10.1002/elps.200700379 ER - TY - JOUR A1 - Ryu MJ A1 - Lee C A1 - Kim J A1 - Shin HS A1 - Yu MH T1 - Proteomic analysis of stargazer mutant mouse neuronal proteins involved in absence seizure JO - J Neurochem Y1 - 2007/10/31 SP - EP - VL - IS - UR - http://dx.doi.org/10.1111/j.1471-4159.2007.05100.x ER - TY - JOUR A1 - Graner MW A1 - Cumming RI A1 - Bigner DD T1 - The heat shock response and chaperones/heat shock proteins in brain tumors: surface expression, release, and possible immune consequences JO - J Neurosci Y1 - 2007 SP - 11214 EP - 27 VL - 27 IS - 42 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17942716&dopt=Abstract ER - TY - JOUR A1 - Christina Herzberg A1 - Lope Andrés Flórez Weidinger A1 - Bastian Dörrbecker A1 - Sebastian Hübner A1 - Jörg Stülke A1 - Fabian M. Commichau T1 - SPINE: A method for the rapid detection and analysis of protein-protein interactions in vivo JO - PROTEOMICS Y1 - 2007 SP - 4032 EP - 4035 VL - 7 IS - 22 UR - http://dx.doi.org/10.1002/pmic.200700491 ER - TY - JOUR A1 - Su C A1 - Peregrin-Alvarez JM A1 - Butland G A1 - Phanse S A1 - Fong V A1 - Emili A A1 - Parkinson J T1 - Bacteriome.org an integrated protein interaction database for E. coli JO - Nucleic Acids Res Y1 - 2007/10/16 SP - EP - VL - IS - UR - http://dx.doi.org/10.1093/nar/gkm807 ER - TY - JOUR A1 - Son D A1 - Kojima I A1 - Inagi R A1 - Matsumoto M A1 - Fujita T A1 - Nangaku M T1 - Chronic hypoxia aggravates renal injury via suppression of Cu/Zn-SOD - a proteomic analysis JO - Am J Physiol Renal Physiol Y1 - 2007/10/24 SP - EP - VL - IS - UR - http://dx.doi.org/10.1152/ajprenal.00113.2007 ER - TY - JOUR A1 - Zhang H A1 - Chan DW T1 - Cancer Biomarker Discovery in Plasma Using a Tissue-targeted Proteomic Approach JO - Cancer Epidemiol Biomarkers Prev Y1 - 2007 SP - 1915 EP - 7 VL - 16 IS - 10 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17932335&dopt=Abstract ER - TY - JOUR A1 - Shao W A1 - Yeretssian G A1 - Doiron K A1 - Hussain SN A1 - Saleh M T1 - The caspase-1 digestome identifies the glycolysis pathway as a target during infection and septic shock JO - J Biol Chem Y1 - 2007 SP - 36321 EP - 9 VL - 282 IS - 50 UR - http://dx.doi.org/10.1074/jbc.M708182200 ER - TY - JOUR A1 - Fu L A1 - Qin YR A1 - Xie D A1 - Chow HY A1 - Ngai SM A1 - Kwong DL A1 - Li Y A1 - Guan XY T1 - Identification of alpha-actinin 4 and 67 kDa laminin receptor as stage-specific markers in esophageal cancer via proteomic approaches JO - Cancer Y1 - 2007 SP - 2672 EP - 81 VL - 110 IS - 12 UR - http://dx.doi.org/10.1002/cncr.23110 ER - TY - JOUR A1 - Robert Ahrends A1 - Stefan Pieper A1 - Andreas Kuhn A1 - Hardy Weisshoff A1 - Meike Hamester A1 - Torsten Lindemann A1 - Christian Scheler A1 - Karola Lehmann A1 - Kerstin Taubner A1 - Michael W. Linscheid T1 - A Metal-coded Affinity Tag Approach to Quantitative Proteomics JO - Mol Cell Proteomics Y1 - 2007 SP - 1907 EP - 1916 VL - 6 IS - 11 UR - http://www.mcponline.org/cgi/content/abstract/6/11/1907?etoc ER - TY - JOUR A1 - Anne Marmagne A1 - Myriam Ferro A1 - Thierry Meinnel A1 - Christophe Bruley A1 - Lauriane Kuhn A1 - Jerome Garin A1 - Helene Barbier-Brygoo A1 - Genevieve Ephritikhine T1 - A High Content in Lipid-modified Peripheral Proteins and Integral Receptor Kinases Features in the Arabidopsis Plasma Membrane Proteome JO - Mol Cell Proteomics Y1 - 2007 SP - 1980 EP - 1996 VL - 6 IS - 11 UR - http://www.mcponline.org/cgi/content/abstract/6/11/1980?etoc ER - TY - JOUR A1 - Smith DG A1 - Gawryluk RM A1 - Spencer DF A1 - Pearlman RE A1 - Siu KW A1 - Gray MW T1 - Exploring the Mitochondrial Proteome of the Ciliate Protozoon Tetrahymena thermophila: Direct Analysis by Tandem Mass Spectrometry JO - J Mol Biol Y1 - 2007 SP - 837 EP - 63 VL - 374 IS - 3 UR - http://dx.doi.org/10.1016/j.jmb.2007.09.051 ER - TY - JOUR A1 - Fuchs D A1 - Vafeiadou K A1 - Hall WL A1 - Daniel H A1 - Williams CM A1 - Schroot JH A1 - Wenzel U T1 - Proteomic biomarkers of peripheral blood mononuclear cells obtained from postmenopausal women undergoing an intervention with soy isoflavones JO - Am J Clin Nutr Y1 - 2007 SP - 1369 EP - 75 VL - 86 IS - 5 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17991648&dopt=Abstract ER - TY - JOUR A1 - Yoko Ishino A1 - Hitomi Okada A1 - Masahiko Ikeuchi A1 - Hisaaki Taniguchi T1 - Mass spectrometry-based prokaryote gene annotation JO - PROTEOMICS Y1 - 2007 SP - 4053 EP - 4065 VL - 7 IS - 22 UR - http://dx.doi.org/10.1002/pmic.200700080 ER - TY - JOUR A1 - Karen Le Moguen A1 - Hubert Lincet A1 - Paulo Marcelo A1 - Edwige Lemoisson A1 - Natacha Heutte A1 - Marilyne Duval A1 - Laurent Poulain A1 - Joëlle Vinh A1 - Pascal Gauduchon A1 - Bruno Baudin T1 - A proteomic kinetic analysis of IGROV1 ovarian carcinoma cell line response to cisplatin treatment JO - PROTEOMICS Y1 - 2007 SP - 4090 EP - 4101 VL - 7 IS - 22 UR - http://dx.doi.org/10.1002/pmic.200700231 ER - TY - JOUR A1 - Richard W. Smith A1 - Jiaxi Wang A1 - Carol P. Bucking A1 - Carmel E. Mothersill A1 - Colin B. Seymour T1 - Evidence for a protective response by the gill proteome of rainbow trout exposed to X-ray induced bystander signals JO - PROTEOMICS Y1 - 2007 SP - 4171 EP - 4180 VL - 7 IS - 22 UR - http://dx.doi.org/10.1002/pmic.200700573 ER - TY - JOUR A1 - Kerrien S A1 - Orchard S A1 - Montecchi-Palazzi L A1 - Aranda B A1 - Quinn AF A1 - Vinod N A1 - Bader GD A1 - Xenarios I A1 - Wojcik J A1 - Sherman D A1 - Tyers M A1 - Salama JJ A1 - Moore S A1 - Ceol A A1 - Chatr-Aryamontri A A1 - Oesterheld M A1 - Stumpflen V A1 - Salwinski L A1 - Nerothin J A1 - Cerami E A1 - Cusick ME A1 - Vidal M A1 - G T1 - Broadening the Horizon - Level 2.5 of the HUPO-PSI Format for Molecular Interactions JO - Y1 - SP - EP - VL - IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17925023&dopt=Abstract ER - TY - JOUR A1 - Ichibangase T A1 - Saimaru H A1 - Takamura N A1 - Kuwahara T A1 - Koyama A A1 - Iwatsubo T A1 - Imai K T1 - Proteomics of Caenorhabditis elegans over-expressing human alpha-synuclein analyzed by fluorogenic derivatization-liquid chromatography/tandem mass spectrometry: identification of actin and several ribosomal proteins as negative markers at early Parkinson JO - Biomed Chromatogr Y1 - 2007/10/15 SP - EP - VL - IS - UR - http://dx.doi.org/10.1002/bmc.931 ER - TY - JOUR A1 - Yunhao Chen A1 - Lee-Yee Choong A1 - Qingsong Lin A1 - Robin Philp A1 - Chee-Hong Wong A1 - Boon-Keong Ang A1 - Yee-Ling Tan A1 - Marie-Chiew-Shia Loh A1 - Choy-Leong Hew A1 - Nilesh Shah A1 - Brian J. Druker A1 - Poh-Kuan Chong A1 - Yoon-Pin Lim T1 - Differential Expression of Novel Tyrosine Kinase Substrates during Breast Cancer Development JO - Mol Cell Proteomics Y1 - 2007 SP - 2072 EP - 2087 VL - 6 IS - 12 UR - http://www.mcponline.org/cgi/content/abstract/6/12/2072?etoc ER - TY - JOUR A1 - Ju Ah Jeong A1 - Kyung-Min Ko A1 - Hyung Soon Park A1 - Jinsook Lee A1 - Cholsoon Jang A1 - Choon-Ju Jeon A1 - Gou Young Koh A1 - Hoeon Kim T1 - Membrane proteomic analysis of human mesenchymal stromal cells during adipogenesis JO - PROTEOMICS Y1 - 2007 SP - 4181 EP - 4191 VL - 7 IS - 22 UR - http://dx.doi.org/10.1002/pmic.200700502 ER - TY - JOUR A1 - Alessio Maiolica A1 - Davide Cittaro A1 - Dario Borsotti A1 - Lau Sennels A1 - ClaudioCiferri A1 - Cataldo Tarricone A1 - Andrea Musacchio A1 - Juri Rappsilber T1 - Structural Analysis of Multiprotein Complexes by Cross-linking, Mass Spectrometry, and Database Searching JO - Mol Cell Proteomics Y1 - 2007 SP - 2200 EP - 2211 VL - 6 IS - 12 UR - http://www.mcponline.org/cgi/content/abstract/6/12/2200?etoc ER - TY - JOUR A1 - Zilberstein G A1 - Korol L A1 - Righetti PG A1 - Bukshpan S T1 - SDS-PAGE Focusing: Preparative Aspects JO - Anal Chem Y1 - 2007 SP - 8624 EP - 30 VL - 79 IS - 22 UR - http://dx.doi.org/10.1021/ac701598y ER - TY - JOUR A1 - Nadia Abed A1 - Marc Bickle A1 - Bernard Mari A1 - Matthieu Schapira A1 - Raquel Sanjuan-Espana A1 - Karine Robbe Sermesant A1 - Olivier Moncorge A1 - Sandrine Mouradian-Garcia A1 - Pascal Barbry A1 - Brian B. Rudkin A1 - Marie-Odile Fauvarque A1 - Isabelle Michaud-Soret A1 - Pierre Colas T1 - A Comparative Analysis of Perturbations Caused by a Gene Knock-out, a Dominant Negative Allele, and a Set of Peptide Aptamers JO - Mol Cell Proteomics Y1 - 2007 SP - 2110 EP - 2121 VL - 6 IS - 12 UR - http://www.mcponline.org/cgi/content/abstract/6/12/2110?etoc ER - TY - JOUR A1 - Huhne R A1 - Koch FT A1 - Suhnel J T1 - A comparative view at comprehensive information resources on three-dimensional structures of biological macro-molecules JO - Brief Funct Genomic Proteomic Y1 - 2007 SP - 220 EP - 39 VL - 6 IS - 3 UR - http://dx.doi.org/10.1093/bfgp/elm020 ER - TY - JOUR A1 - Qingchun Zhang and Yinsheng Wang T1 - Homeodomain-Interacting Protein Kinase-2 (HIPK2) Phosphorylates HMGA1a at Ser-35, Thr-52, and Thr-77 and Modulates Its DNA Binding Affinity JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2007 SP - 4711 EP - 4719 VL - 6 IS - 12 UR - http://dx.doi.org/10.1021/pr700571d ER - TY - JOUR A1 - Vathany Kulasingam and Eleftherios P. Diamandis T1 - Proteomics Analysis of Conditioned Media from Three Breast Cancer Cell Lines: A Mine for Biomarkers and Therapeutic Targets JO - Mol Cell Proteomics Y1 - 2007 SP - 1997 EP - 2011 VL - 6 IS - 11 UR - http://www.mcponline.org/cgi/content/abstract/6/11/1997?etoc ER - TY - JOUR A1 - Hasmik Keshishian A1 - Terri Addona A1 - Michael Burgess A1 - Eric Kuhn A1 - Steven A. Carr T1 - Quantitative, Multiplexed Assays for Low Abundance Proteins in Plasma by Targeted Mass Spectrometry and Stable Isotope Dilution JO - Mol Cell Proteomics Y1 - 2007 SP - 2212 EP - 2229 VL - 6 IS - 12 UR - http://www.mcponline.org/cgi/content/abstract/6/12/2212?etoc ER - TY - JOUR A1 - Wei-Qiang Chen A1 - Andrus Viidik A1 - Monika Skalicky A1 - Harald Höger A1 - Gert Lubec T1 - Hippocampal signaling cascades are modulated in voluntary and treadmill exercise rats JO - ELECTROPHORESIS Y1 - 2007 SP - 4392 EP - 4400 VL - 28 IS - 23 UR - http://dx.doi.org/10.1002/elps.200700336 ER - TY - JOUR A1 - Jiang Wu A1 - Wei Liu A1 - Eric Sousa A1 - Yongchang Qiu A1 - Debra D. Pittman A1 - Vasu Maganti A1 - Jeffrey Feldman A1 - Davinder Gill A1 - Zhijian Lu A1 - Andrew J. Dorner A1 - Robert Schaub A1 - Xiang-Yang Tan T1 - Proteomic Identification of Endothelial Proteins Isolated in Situ from Atherosclerotic Aorta via Systemic Perfusion JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2007 SP - 4728 EP - 4736 VL - 6 IS - 12 UR - http://dx.doi.org/10.1021/pr070537c ER - TY - JOUR A1 - Nicolas Abello A1 - Huib A. M. Kerstjens A1 - Dirkje S. Postma A1 - Rainer Bischoff T1 - Selective Acylation of Primary Amines in Peptides and Proteins JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2007 SP - 4770 EP - 4776 VL - 6 IS - 12 UR - http://dx.doi.org/10.1021/pr070154e ER - TY - JOUR A1 - Zong Y A1 - Zhang S A1 - Chen HT A1 - Zong Y A1 - Shi Y T1 - Forward-phase and reverse-phase protein microarray JO - Methods Mol Biol Y1 - 2007 SP - 363 EP - 74 VL - 381 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17984529&dopt=Abstract ER - TY - JOUR A1 - Rees-Unwin KS A1 - Craven RA A1 - Davenport E A1 - Hanrahan S A1 - Totty NF A1 - Dring AM A1 - Banks RE A1 - J Morgan G A1 - Davies FE T1 - Proteomic evaluation of pathways associated with dexamethasone-mediated apoptosis and resistance in multiple myeloma JO - Br J Haematol Y1 - 2007 SP - 559 EP - 67 VL - 139 IS - 4 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17979943&dopt=Abstract ER - TY - JOUR A1 - Yang X A1 - Thannhauser TW A1 - Burrows M A1 - Cox-Foster D A1 - Gildow FE A1 - Gray SM T1 - Coupling genetics and proteomics to identify aphid proteins associated with vector-specific transmission of Polerovirus (Luteoviridae) JO - J Virol Y1 - 2008 SP - 291 EP - 9 VL - 82 IS - 1 UR - http://dx.doi.org/10.1128/JVI.01736-07 ER - TY - JOUR A1 - Kee-Hong Kim A1 - Kimberly M. 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Cherry T1 - A Proteomics Strategy To Discover β-Glucosidases from Aspergillus fumigatus with Two-Dimensional Page In-Gel Activity Assay and Tandem Mass Spectrometry JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2007 SP - 4749 EP - 4757 VL - 6 IS - 12 UR - http://dx.doi.org/10.1021/pr070355i ER - TY - JOUR A1 - Miguet L A1 - Sanglier S A1 - Schaeffer C A1 - Potier N A1 - Mauvieux L A1 - Van Dorsselaer A T1 - Microparticles: a new tool for plasma membrane sub-cellular proteomic JO - Subcell Biochem Y1 - 2007 SP - 21 EP - 34 VL - 43 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17953389&dopt=Abstract ER - TY - JOUR A1 - Reumann S A1 - Babujee L A1 - Ma C A1 - Wienkoop S A1 - Siemsen T A1 - Antonicelli GE A1 - Rasche N A1 - Luder F A1 - Weckwerth W A1 - Jahn O T1 - Proteome Analysis of Arabidopsis Leaf Peroxisomes Reveals Novel Targeting Peptides, Metabolic Pathways, and Defense Mechanisms JO - Plant Cell Y1 - 2007 SP - 3170 EP - 93 VL - 19 IS - 10 UR - http://dx.doi.org/10.1105/tpc.107.050989 ER - TY - JOUR A1 - Frederick RO A1 - Bergeman L A1 - Blommel PG A1 - Bailey LJ A1 - McCoy JG A1 - Song J A1 - Meske L A1 - Bingman CA A1 - Riters M A1 - Dillon NA A1 - Kunert J A1 - Yoon JW A1 - Lim A A1 - Cassidy M A1 - Bunge J A1 - Aceti DJ A1 - Primm JG A1 - Markley JL A1 - Phillips GN Jr A1 - Fox BG T1 - Small-scale, semi-automated purification of eukaryotic proteins for structure determination JO - J Struct Funct Genomics Y1 - 2007/11/6 SP - EP - VL - IS - UR - http://dx.doi.org/10.1007/s10969-007-9032-5 ER - TY - JOUR A1 - Thibault Mayor A1 - Johannes Graumann A1 - Jennifer Bryan A1 - Michael J. MacCoss,and Raymond J. Deshaies T1 - Quantitative Profiling of Ubiquitylated Proteins Reveals Proteasome Substrates and the Substrate Repertoire Influenced by the Rpn10 Receptor Pathway JO - Mol Cell Proteomics Y1 - 2007 SP - 1885 EP - 1895 VL - 6 IS - 11 UR - http://www.mcponline.org/cgi/content/abstract/6/11/1885?etoc ER - TY - JOUR A1 - Linding R A1 - Juhl Jensen L A1 - Pasculescu A A1 - Olhovsky M A1 - Colwill K A1 - Bork P A1 - Yaffe MB A1 - Pawson T T1 - NetworKIN: a resource for exploring cellular phosphorylation networks JO - Nucleic Acids Res Y1 - 2007/11/2 SP - EP - VL - IS - UR - http://dx.doi.org/10.1093/nar/gkm902 ER - TY - JOUR A1 - Bo Huang A1 - Samuel Kim A1 - Hongkai Wu A1 - Richard N. Zare T1 - Use of a Mixture of n-Dodecyl--D-maltoside and Sodium Dodecyl Sulfate in Poly(dimethylsiloxane) Microchips To Suppress Adhesion and Promote Separation of Proteins JO - ANALYTICAL CHEMISTRY Y1 - 2007 SP - 9145 EP - 9149 VL - 79 IS - 23 UR - http://dx.doi.org/10.1021/ac071544n ER - TY - JOUR A1 - Angela J. Ahrendt A1 - Sandra L. Tollaksen A1 - Carl Lindberg A1 - Wenhong Zhu A1 - John R. Yates III A1 - Kelly P. Nevin A1 - György Babnigg A1 - Derek R. Lovley A1 - Carol S. Giometti T1 - Steady state protein levels in Geobacter metallireducens grown with iron (III) citrate or nitrate as terminal electron acceptor JO - PROTEOMICS Y1 - 2007 SP - 4148 EP - 4157 VL - 7 IS - 22 UR - http://dx.doi.org/10.1002/pmic.200600955 ER - TY - JOUR A1 - Young Nam Kim A1 - Hyoung Kyu Kim A1 - Mohamad Warda A1 - Nari Kim A1 - Won Sun Park A1 - Ab del Bary Prince A1 - Dae Hoon Jeong A1 - Dae Shim Lee A1 - Ki Tae Kim A1 - Jin Han T1 - Toward a better understanding of preeclampsia: Comparative proteomic analysis of preeclamptic placentas JO - PROTEOMICS - CLINICAL APPLICATIONS Y1 - 2007 SP - 1625 EP - 1636 VL - 1 IS - 12 UR - http://dx.doi.org/10.1002/prca.200700034 ER - TY - JOUR A1 - María Soledad Sosa A1 - María Romina Girotti A1 - Edgardo Salvatierra A1 - Federico Prada A1 - Juan Antonio López de Olmo A1 - Silvia Juárez Gallango A1 - Juan Pablo Albar A1 - Osvaldo Luis Podhajcer A1 - Andrea Sabina Llera T1 - Proteomic analysis identified N-cadherin, clusterin, and HSP27 as mediators of SPARC (secreted protein, acidic and rich in cysteines) activity in melanoma cells JO - PROTEOMICS Y1 - 2007 SP - 4123 EP - 4134 VL - 7 IS - 22 UR - http://dx.doi.org/10.1002/pmic.200700255 ER - TY - JOUR A1 - Kall L A1 - Canterbury JD A1 - Weston J A1 - Noble WS A1 - Maccoss MJ T1 - Semi-supervised learning for peptide identification from shotgun proteomics datasets JO - Nat Methods Y1 - 2007 SP - 923 EP - 5 VL - 4 IS - 11 UR - http://dx.doi.org/10.1038/nmeth1113 ER - TY - JOUR A1 - Bitarte N A1 - Bandres E A1 - Zarate R A1 - Ramirez N A1 - Garcia-Foncillas J T1 - Moving forward in colorectal cancer research, what proteomics has to tell JO - World J Gastroenterol Y1 - 2007 SP - 5813 EP - 21 VL - 13 IS - 44 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17990347&dopt=Abstract ER - TY - JOUR A1 - Frank Schmidt A1 - Hanne K. Hustoft A1 - Margarita Strozynski A1 - Christiane Dimmler A1 - Thomas Rudel A1 - Bernd Thiede T1 - Quantitative proteome analysis of cisplatin-induced apoptotic Jurkat T cells by stable isotope labeling with amino acids in cell culture, SDS-PAGE, and LC-MALDI-TOF/TOF MS JO - ELECTROPHORESIS Y1 - 2007 SP - 4359 EP - 4368 VL - 28 IS - 23 UR - http://dx.doi.org/10.1002/elps.200700119 ER - TY - JOUR A1 - Elielson Souza-Rodrígues A1 - Josep M. Estanyol A1 - Erica Friedrich-Heineken A1 - Eva Olmedo A1 - Jorge Vera A1 - Nuria Canela A1 - Sonia Brun A1 - Neus Agell A1 - Ulrich Hübscher A1 - Oriol Bachs A1 - Montserrat Jaumot T1 - Proteomic analysis of p16ink4a-binding proteins JO - PROTEOMICS Y1 - 2007 SP - 4102 EP - 4111 VL - 7 IS - 22 UR - http://dx.doi.org/10.1002/pmic.200700133 ER - TY - JOUR A1 - Wu J A1 - Liu W A1 - Bemis A A1 - Wang E A1 - Qiu Y A1 - Morris EA A1 - Flannery CR A1 - Yang Z T1 - Comparative proteomic characterization of articular cartilage tissue from normal donors and patients with osteoarthritis JO - Arthritis Rheum Y1 - 2007 SP - 3675 EP - 3684 VL - 56 IS - 11 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17968891&dopt=Abstract ER - TY - JOUR A1 - Karine Gallardo A1 - Christian Firnhaber A1 - Helene Zuber A1 - Delphine Hericher,Maya Belghazi A1 - Celine Henry A1 - Helge Kuster A1 - Richard Thompson T1 - A Combined Proteome and Transcriptome Analysis of Developing Medicago truncatula Seeds: Evidence for Metabolic Specialization of Maternal and Filial Tissues JO - Mol Cell Proteomics Y1 - 2007 SP - 2165 EP - 2179 VL - 6 IS - 12 UR - http://www.mcponline.org/cgi/content/abstract/6/12/2165?etoc ER - TY - JOUR A1 - Brunt J A1 - Hansen R A1 - Jamieson DJ A1 - Austin B T1 - Proteomic analysis of rainbow trout (Oncorhynchus mykiss, Walbaum) serum after administration of probiotics in diets JO - Vet Immunol Immunopathol Y1 - 2007/10/2 SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.vetimm.2007.09.010 ER - TY - JOUR A1 - von der Haar T T1 - Optimized protein extraction for quantitative proteomics of yeasts JO - Y1 - SP - EP - VL - IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17957260&dopt=Abstract ER - TY - JOUR A1 - Waanders LF A1 - Hanke S A1 - Mann M T1 - Top-Down Quantitation and Characterization of SILAC-Labeled Proteins JO - J Am Soc Mass Spectrom Y1 - 2007 SP - 2058 EP - 64 VL - 18 IS - 11 UR - http://dx.doi.org/10.1016/j.jasms.2007.09.001 ER - TY - JOUR A1 - Kurland CG A1 - Canback B A1 - Berg OG T1 - The origins of modern proteomes JO - Biochimie Y1 - 2007 SP - 1454 EP - 63 VL - 89 IS - 12 UR - http://dx.doi.org/10.1016/j.biochi.2007.09.004 ER - TY - JOUR A1 - Sundsten T A1 - Zethelius B A1 - Berne C A1 - Bergsten P T1 - Plasma proteome changes in type 2 diabetes mellitus subjects with low or high early insulin response JO - Clin Sci (Lond) Y1 - 2007/10/26 SP - EP - VL - IS - UR - http://dx.doi.org/10.1042/CS20070323 ER - TY - JOUR A1 - Sze Wan Shan A1 - Mei Kuen Tang A1 - Pak Ham Chow A1 - Miguel Maroto A1 - Dong Qing Cai A1 - Kenneth K. H. Lee T1 - Induction of growth arrest and polycomb gene expression by reversine allows C2C12 cells to be reprogrammed to various differentiated cell types JO - PROTEOMICS Y1 - 2007 SP - 4303 EP - 4316 VL - 7 IS - 23 UR - http://dx.doi.org/10.1002/pmic.200700636 ER - TY - JOUR A1 - Pascal Mossuz A1 - Ali Bouamrani A1 - Sabine Brugičre A1 - Marie Arlotto A1 - Sylvie Hermouet A1 - Eric Lippert A1 - François Laporte A1 - François Girodon A1 - Irčne Dobo A1 - Praloran Vincent A1 - Jérome Garin A1 - Jean Yves Cahn A1 - François Berger T1 - Apolipoprotein A1: A new serum marker correlated to JAK2 V617F proportion at diagnosis in patients with polycythemia vera JO - PROTEOMICS - CLINICAL APPLICATIONS Y1 - 2007 SP - 1605 EP - 1612 VL - 1 IS - 12 UR - http://dx.doi.org/10.1002/prca.200601051 ER - TY - JOUR A1 - Izaskun Lacunza A1 - Tibor Kremmer A1 - José Carlos Díez-Masa A1 - Jesús Sanz A1 - Mercedes de Frutos T1 - Comparison of ?-1-acid glycoprotein isoforms from healthy and cancer patients by capillary IEF JO - ELECTROPHORESIS Y1 - 2007 SP - 4447 EP - 4451 VL - 28 IS - 23 UR - http://dx.doi.org/10.1002/elps.200600700 ER - TY - JOUR A1 - Wilma Dormeyer A1 - Shabaz Mohammed A1 - Bas van Breukelen A1 - Jeroen Krijgsveld A1 - Albert J. 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Martin A1 - Ting Liu A1 - Bert C. Lynn A1 - Anthony P. Sinai T1 - Elimination of Affinity Reagent Interference for the Mass Spectrometric Detection of Low-Abundance Proteins Following Immunoprecipitation JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2007 SP - 4758 EP - 4762 VL - 6 IS - 12 UR - http://dx.doi.org/10.1021/pr070517a ER - TY - JOUR A1 - Foss EJ A1 - Radulovic D A1 - Shaffer SA A1 - Ruderfer DM A1 - Bedalov A A1 - Goodlett DR A1 - Kruglyak L T1 - Genetic basis of proteome variation in yeast JO - Nat Genet Y1 - 2007 SP - 1369 EP - 75 VL - 39 IS - 11 UR - http://dx.doi.org/10.1038/ng.2007.22 ER - TY - JOUR A1 - McLerran D A1 - Grizzle WE A1 - Feng Z A1 - Bigbee WL A1 - Banez LL A1 - Cazares LH A1 - Chan DW A1 - Diaz J A1 - Izbicka E A1 - Kagan J A1 - Malehorn DE A1 - Malik G A1 - Oelschlager D A1 - Partin A A1 - Randolph T A1 - Rosenzweig N A1 - Srivastava S A1 - Srivastava S A1 - Thompson IM A1 - Thornquist M A1 - Troyer D A1 - Yasui Y A1 - Zhang T1 - Analytical Validation of Serum Proteomic Profiling for Diagnosis of Prostate Cancer; Sources of Sample Bias JO - Clin Chem Y1 - 2007/11/2 SP - EP - VL - IS - UR - http://dx.doi.org/10.1373/clinchem.2007.091470 ER - TY - JOUR A1 - Giselle M. Knudsen T1 - Proteomics for Biological Discovery. * Edited by Timothy D. Veenstra and John R. Yates III JO - Brief Bioinform Y1 - 2007 SP - 467 EP - 468 VL - 8 IS - 6 UR - http://bib.oxfordjournals.org/cgi/content/full/8/6/467?etoc ER - TY - JOUR A1 - Sa-nga Pattanakitsakul A1 - Kamonthip Rungrojcharoenkit A1 - Rattiyaporn Kanlaya A1 - Supachok Sinchaikul A1 - Sansanee Noisakran A1 - Shui-Tein Chen A1 - Prida Malasit A1 - Visith Thongboonkerd T1 - Proteomic Analysis of Host Responses in HepG2 Cells during Dengue Virus Infection JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2007 SP - 4592 EP - 4600 VL - 6 IS - 12 UR - http://dx.doi.org/10.1021/pr070366b ER - TY - JOUR A1 - Andreas J. Hulsmeier A1 - Patricie Paesold-Burda A1 - Thierry Hennet T1 - N-Glycosylation Site Occupancy in Serum Glycoproteins Using Multiple Reaction Monitoring Liquid Chromatography-Mass Spectrometry JO - Mol Cell Proteomics Y1 - 2007 SP - 2132 EP - 2138 VL - 6 IS - 12 UR - http://www.mcponline.org/cgi/content/abstract/6/12/2132?etoc ER - TY - JOUR A1 - McLaughlin WA A1 - Chen K A1 - Hou T A1 - Wang W T1 - On the detection of functionally coherent groups of protein domains with an extension to protein annotation JO - Y1 - SP - EP - VL - IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17937820&dopt=Abstract ER - TY - JOUR A1 - Lefevre T A1 - Thomas F A1 - Ravel S A1 - Patrel D A1 - Renault L A1 - Le Bourligu L A1 - Cuny G A1 - Biron DG T1 - Trypanosoma brucei brucei induces alteration in the head proteome of the tsetse fly vector Glossina palpalis gambiensis JO - Insect Mol Biol Y1 - 2007/10/19 SP - EP - VL - IS - UR - http://dx.doi.org/10.1111/j.0307-6975.2007.00761.x ER - TY - JOUR A1 - Jiang Wu A1 - Quazi Shakey A1 - Wei Liu A1 - Alwin Schuller A1 - Maximillian T. Follettie T1 - Global Profiling of Phosphopeptides by Titania Affinity Enrichment JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2007 SP - 4684 EP - 4689 VL - 6 IS - 12 UR - http://dx.doi.org/10.1021/pr070481m ER - TY - JOUR A1 - Alves G A1 - Ogurtsov AY A1 - Wu WW A1 - Wang G A1 - Shen RF A1 - Yu YK T1 - Calibrating E-values for MS2 database search methods JO - Y1 - SP - EP - VL - IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17983478&dopt=Abstract ER - TY - JOUR A1 - Birschmann I A1 - Mietner S A1 - Dittrich M A1 - Pfrang J A1 - Dandekar T A1 - Walter U T1 - Use of functional highly purified human platelets for the identification of new proteins of the IPP signaling pathway JO - Thromb Res Y1 - 2007/10/9 SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.thromres.2007.08.022 ER - TY - JOUR A1 - Spicer V A1 - Yamchuk A A1 - Cortens J A1 - Sousa S A1 - Ens W A1 - Standing KG A1 - Wilkins JA A1 - Krokhin OV T1 - Sequence-Specific Retention Calculator. 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Nice T1 - A novel magnetic bead-based assay with high sensitivity and selectivity for analysis of telomerase in exfoliated cells from patients with bladder and colon cancer JO - ELECTROPHORESIS Y1 - 2007 SP - 4435 EP - 4446 VL - 28 IS - 23 UR - http://dx.doi.org/10.1002/elps.200600829 ER - TY - JOUR A1 - Chih-Ching Chang A1 - Shu-Hui Chen A1 - Shih-Hsin Ho A1 - Chun-Yuh Yang A1 - Hong-Da Wang A1 - Mei-Ling Tsai T1 - Proteomic analysis of proteins from bronchoalveolar lavage fluid reveals the action mechanism of ultrafine carbon black-induced lung injury in mice JO - PROTEOMICS Y1 - 2007 SP - 4388 EP - 4397 VL - 7 IS - 23 UR - http://dx.doi.org/10.1002/pmic.200700164 ER - TY - JOUR A1 - Cristina-Maria Valcu and Mihai Valcu T1 - Reproducibility of Two-Dimensional Gel Electrophoresis at Different Replication Levels JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2007 SP - 4677 EP - 4683 VL - 6 IS - 12 UR - http://dx.doi.org/10.1021/pr070396e ER - TY - JOUR A1 - Zhi Dai A1 - Jia Fan A1 - Yinkun Liu A1 - Jian Zhou A1 - Dousheng Bai A1 - Changjun Tan A1 - Kun Guo A1 - Yu Zhang A1 - Yan Zhao A1 - Pengyuan Yang T1 - Identification and analysis of ?1,6-fucosylated proteins in human normal liver tissues by a target glycoproteomic approach JO - ELECTROPHORESIS Y1 - 2007 SP - 4382 EP - 4391 VL - 28 IS - 23 UR - http://dx.doi.org/10.1002/elps.200700233 ER - TY - JOUR A1 - Collins MO A1 - Grant SG T1 - Supramolecular signalling complexes in the nervous system JO - Subcell Biochem Y1 - 2007 SP - 185 EP - 207 VL - 43 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17953395&dopt=Abstract ER - TY - JOUR A1 - Vineis P A1 - Perera F T1 - Molecular epidemiology and biomarkers in etiologic cancer research: the new in light of the old JO - Cancer Epidemiol Biomarkers Prev Y1 - 2007 SP - 1954 EP - 65 VL - 16 IS - 10 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17932342&dopt=Abstract ER - TY - JOUR A1 - Pennington K A1 - Beasley CL A1 - Dicker P A1 - Fagan A A1 - English J A1 - Pariante CM A1 - Wait R A1 - Dunn MJ A1 - Cotter DR T1 - Prominent synaptic and metabolic abnormalities revealed by proteomic analysis of the dorsolateral prefrontal cortex in schizophrenia and bipolar disorder JO - Mol Psychiatry Y1 - 2007/10/16 SP - EP - VL - IS - UR - http://dx.doi.org/10.1038/sj.mp.4002098 ER - TY - JOUR A1 - Fenyo D A1 - Beavis RC T1 - Informatics development: Challenges and solutions for MALDI mass spectrometry JO - Mass Spectrom Rev Y1 - 2008 SP - 1 EP - 19 VL - 27 IS - 1 UR - http://dx.doi.org/10.1002/mas.20152 ER - TY - JOUR A1 - Davies DH A1 - Wyatt LS A1 - Newman FK A1 - Earl PL A1 - Chun S A1 - Hernandez JE A1 - Molina DM A1 - Hirst S A1 - Moss B A1 - Frey SE A1 - Felgner PL T1 - Antibody Profiling by Proteome Microarray Reveals the Immunogenicity of the Attenuated Smallpox Vaccine, Modified Vaccinia Virus Ankara (MVA) is Comparable to Dryvax(R) JO - J Virol Y1 - 2007/10/31 SP - EP - VL - IS - UR - http://dx.doi.org/10.1128/JVI.01706-07 ER - TY - JOUR A1 - Hu Zhou A1 - Jie Dai A1 - Quan-Hu Sheng A1 - Rong-Xia Li A1 - Chia-Hui Shieh A1 - Andras Guttman A1 - Rong Zeng T1 - A fully automated 2-D LC-MS method utilizing online continuous pH and RP gradients for global proteome analysis JO - ELECTROPHORESIS Y1 - 2007 SP - 4311 EP - 4319 VL - 28 IS - 23 UR - http://dx.doi.org/10.1002/elps.200700463 ER - TY - JOUR A1 - Mary Winters A1 - Bhavana Dabir A1 - Minshu Yu A1 - Elise C. Kohn T1 - Constitution and quantity of lysis buffer alters outcome of reverse phase protein microarrays JO - PROTEOMICS Y1 - 2007 SP - 4066 EP - 4068 VL - 7 IS - 22 UR - http://dx.doi.org/10.1002/pmic.200700484 ER - TY - JOUR A1 - Roy K A1 - Anba J A1 - Corthier G A1 - Rigottier-Gois L A1 - Monnet V A1 - Mistou MY T1 - Metabolic Adaptation of Lactococcus lactis in the Digestive Tract: The Example of Response to Lactose JO - J Mol Microbiol Biotechnol Y1 - 2008 SP - 137 EP - 44 VL - 14 IS - 1-3 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17957121&dopt=Abstract ER - TY - JOUR A1 - Baharvand H A1 - Heidari M A1 - Ebrahimi M A1 - Valadbeigi T A1 - Salekdeh GH T1 - Proteomic analysis of epithelium-denuded human amniotic membrane as a limbal stem cell niche JO - Mol Vis Y1 - 2007 SP - 1711 EP - 21 VL - 13 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17960109&dopt=Abstract ER - TY - JOUR A1 - Mano S A1 - Miwa T A1 - Nishikawa SI A1 - Mimura T A1 - Nishimura M T1 - The plant organelles database (PODB): a collection of visualized plant organelles and protocols for plant organelle research JO - Nucleic Acids Res Y1 - 2007/10/11 SP - EP - VL - IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17932059&dopt=Abstract ER - TY - JOUR A1 - Yue Ge A1 - R. 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Owen T1 - Toxicoproteomics and its application to human health risk assessment JO - PROTEOMICS - CLINICAL APPLICATIONS Y1 - 2007 SP - 1613 EP - 1624 VL - 1 IS - 12 UR - http://dx.doi.org/10.1002/prca.200700490 ER - TY - JOUR A1 - Matharoo-Ball B A1 - Ball G A1 - Rees R T1 - Clinical proteomics: discovery of cancer biomarkers using mass spectrometry and bioinformatics approaches--a prostate cancer perspective JO - Vaccine Y1 - 2007 SP - B110 EP - 21 VL - 25 IS - Suppl 2 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17916461&dopt=Abstract ER - TY - JOUR A1 - Wu X A1 - Tseng CW A1 - Edwards N T1 - HMMatch: Peptide Identification by Spectral Matching of Tandem Mass Spectra Using Hidden Markov Models JO - J Comput Biol Y1 - 2007 SP - 1025 EP - 43 VL - 14 IS - 8 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17985986&dopt=Abstract ER - TY - JOUR A1 - Kavanagh DM A1 - Powell WE A1 - Malik P A1 - Lazou V A1 - Schirmer EC T1 - Organelle proteome variation among different cell types: lessons from nuclear membrane proteins JO - Subcell Biochem Y1 - 2007 SP - 51 EP - 76 VL - 43 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17953391&dopt=Abstract ER - TY - JOUR A1 - Sheoran IS A1 - Ross AR A1 - Olson DJ A1 - Sawhney VK T1 - Proteomic analysis of tomato (Solanum lycopersicum, formerly hycopersicon esculentum) pollen JO - J Exp Bot Y1 - 2007 SP - 3525 EP - 35 VL - 58 IS - 13 UR - http://dx.doi.org/10.1093/jxb/erm199 ER - TY - JOUR A1 - Oleg V. Kovalenko A1 - Xiuwei H. Yang A1 - Martin E. Hemler T1 - A Novel Cysteine Cross-linking Method Reveals a Direct Association between Claudin-1 and Tetraspanin CD9 JO - Mol Cell Proteomics Y1 - 2007 SP - 1855 EP - 1867 VL - 6 IS - 11 UR - http://www.mcponline.org/cgi/content/abstract/6/11/1855?etoc ER - TY - JOUR A1 - O'leary SJ A1 - Poulis BA A1 - von Aderkas P T1 - Identification of two thaumatin-like proteins (TLPs) in the pollination drop of hybrid yew that may play a role in pathogen defence during pollen collection JO - Tree Physiol Y1 - 2007 SP - 1649 EP - 59 VL - 27 IS - 12 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17938097&dopt=Abstract ER - TY - JOUR A1 - Knuckles TL A1 - Dreher KL T1 - Fine oil combustion particle bioavailable constituents induce molecular profiles of oxidative stress, altered function, and cellular injury in cardiomyocytes JO - J Toxicol Environ Health A Y1 - 2007 SP - 1824 EP - 37 VL - 70 IS - 21 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17934955&dopt=Abstract ER - TY - JOUR A1 - Zahedi RP A1 - Moebius J A1 - Sickmann A T1 - Two-dimensional BAC/SDS-PAGE for membrane proteomics JO - Subcell Biochem Y1 - 2007 SP - 13 EP - 20 VL - 43 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17953388&dopt=Abstract ER - TY - JOUR A1 - Christian Johannes Gloeckner A1 - Karsten Boldt A1 - Annette Schumacher A1 - Ronald Roepman A1 - Marius Ueffing T1 - A novel tandem affinity purification strategy for the efficient isolation and characterisation of native protein complexes JO - PROTEOMICS Y1 - 2007 SP - 4228 EP - 4234 VL - 7 IS - 23 UR - http://dx.doi.org/10.1002/pmic.200700038 ER - TY - JOUR A1 - Sebastian Wiese A1 - Thomas Gronemeyer A1 - Rob Ofman A1 - Markus Kunze A1 - Claudia P. Grou A1 - Jose A. Almeida A1 - Martin Eisenacher A1 - Christian Stephan A1 - Heiko Hayen A1 - Lukas Schollenberger A1 - Thomas Korosec A1 - Hans R. Waterham A1 - Wolfgang Schliebs A1 - Ralf Erdmann A1 - Johannes Berger A1 - Hel T1 - Proteomics Characterization of Mouse Kidney Peroxisomes by Tandem Mass Spectrometry and Protein Correlation Profiling JO - Mol Cell Proteomics Y1 - 2007 SP - 2045 EP - 2057 VL - 6 IS - 12 UR - http://www.mcponline.org/cgi/content/abstract/6/12/2045?etoc ER - TY - JOUR A1 - Oliver Valerius A1 - Malte Kleinschmidt A1 - Nicole Rachfall A1 - Florian Schulze,Sarai Lopez Marin A1 - Michael Hoppert A1 - Katrin Streckfuss-Bomeke A1 - Claudia Fischer A1 - Gerhard H. Braus T1 - The Saccharomyces Homolog of Mammalian RACK1, Cpc2/Asc1p, Is Required for FLO11-dependent Adhesive Growth and Dimorphism JO - Mol Cell Proteomics Y1 - 2007 SP - 1968 EP - 1979 VL - 6 IS - 11 UR - http://www.mcponline.org/cgi/content/abstract/6/11/1968?etoc ER - TY - JOUR A1 - Frank Schmidt A1 - Margarita Strozynski A1 - Sandra S. Salus A1 - Hilde Nilsen A1 - Bernd Thiede T1 - Rapid determination of amino acid incorporation by stable isotope labeling with amino acids in cell culture (SILAC) JO - Rapid Communications in Mass Spectrometry Y1 - 2007 SP - 3919 EP - 3926 VL - 21 IS - 23 UR - http://dx.doi.org/10.1002/rcm.3290 ER - TY - JOUR A1 - Simonsen AH A1 - McGuire J A1 - Podust VN A1 - Hagnelius NO A1 - Nilsson TK A1 - Kapaki E A1 - Vassilopoulos D A1 - Waldemar G T1 - A Novel Panel of Cerebrospinal Fluid Biomarkers for the Differential Diagnosis of Alzheimer's Disease versus Normal Aging and Frontotemporal Dementia JO - Dement Geriatr Cogn Disord Y1 - 2007 SP - 434 EP - 440 VL - 24 IS - 6 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17971664&dopt=Abstract ER - TY - JOUR A1 - Morgan PE A1 - Sturgess AD A1 - Hennessy A A1 - Davies MJ T1 - Serum protein oxidation and apolipoprotein CIII levels in people with systemic lupus erythematosus with and without nephritis JO - Free Radic Res Y1 - 2007/10/22 SP - EP - VL - IS - UR - http://dx.doi.org/10.1080/10715760701684809 ER - TY - JOUR A1 - Wang Z A1 - Wu W A1 - Fang X A1 - Wang Y A1 - Xiao C A1 - Zhao R A1 - Wang L A1 - Qiao Z T1 - Protein expression changed by nicotine in rat vascular smooth muscle cells JO - J Physiol Biochem Y1 - 2007 SP - 161 EP - 9 VL - 63 IS - 2 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17933390&dopt=Abstract ER - TY - JOUR A1 - Chiu KH A1 - Huang HW A1 - Mok HK T1 - Differential Proteome Analysis of Hagfish Dental and Somatic Skeletal Muscles JO - Mar Biotechnol (NY) Y1 - 2007 SP - 689 EP - 700 VL - 9 IS - 6 UR - http://dx.doi.org/10.1007/s10126-007-9020-6 ER - TY - JOUR A1 - Schmitt S A1 - Linder M A1 - Standker L A1 - Hammes HP A1 - Preissner KT T1 - Identification of CML-modified Proteins in Hemofiltrate of Diabetic Patients by Proteome Analysis JO - Exp Clin Endocrinol Diabetes Y1 - 2007/10/9 SP - EP - VL - IS - UR - http://dx.doi.org/10.1055/s-2007-985370 ER - TY - JOUR A1 - Marc Weinkauf A1 - Maximilian Christopeit A1 - Wolfgang Hiddemann A1 - Martin Dreyling T1 - Proteome- and microarray-based expression analysis of lymphoma cell lines identifies a p53-centered cluster of differentially expressed proteins in mantle cell and follicular lymphoma JO - ELECTROPHORESIS Y1 - 2007 SP - 4416 EP - 4426 VL - 28 IS - 23 UR - http://dx.doi.org/10.1002/elps.200600831 ER - TY - JOUR A1 - Wen Ding A1 - Jennifer J. Hill A1 - John Kelly T1 - Selective Enrichment of Glycopeptides from Glycoprotein Digests Using Ion-Pairing Normal-Phase Liquid Chromatography JO - ANALYTICAL CHEMISTRY Y1 - 2007 SP - 8891 EP - 8899 VL - 79 IS - 23 UR - http://dx.doi.org/10.1021/ac0707535 ER - TY - JOUR A1 - Hong SJ A1 - Lessner FH A1 - Mahen EM A1 - Keiler KC T1 - Proteomic identification of tmRNA substrates JO - Proc Natl Acad Sci U S A Y1 - 2007 SP - 17128 EP - 33 VL - 104 IS - 43 UR - http://dx.doi.org/10.1073/pnas.0707671104 ER - TY - JOUR A1 - Zhiping Deng A1 - Xin Zhang A1 - Wenqiang Tang A1 - Juan A. Oses-Prieto A1 - Nagi Suzuki A1 - Joshua M. Gendron A1 - Huanjing Chen A1 - Shenheng Guan A1 - Robert J. Chalkley A1 - T. Kaye Peterman A1 - Alma L. Burlingame A1 - Zhi-Yong Wang T1 - A Proteomics Study of Brassinosteroid Response in Arabidopsis JO - Mol Cell Proteomics Y1 - 2007 SP - 2058 EP - 2071 VL - 6 IS - 12 UR - http://www.mcponline.org/cgi/content/abstract/6/12/2058?etoc ER - TY - JOUR A1 - Crystal Sao-Fong Cheung A1 - Po-Ming Hon A1 - Kwok-Pui Fung A1 - Shannon Wing-Ngor Au T1 - Proteomic characterization of Sophoraflavone J-induced apoptosis in HepG2 cells JO - PROTEOMICS - CLINICAL APPLICATIONS Y1 - 2007 SP - 1532 EP - 1544 VL - 1 IS - 12 UR - http://dx.doi.org/10.1002/prca.200601000 ER - TY - JOUR A1 - Gao Y A1 - Colletti K A1 - Pari GS T1 - Identification of Human Cytomegalovirus UL84 viral and cellular encoded binding partners using Proteomics Analysis JO - J Virol Y1 - 2008 SP - 96 EP - 104 VL - 82 IS - 1 UR - http://dx.doi.org/10.1128/JVI.01559-07 ER - TY - JOUR A1 - Mueller DR A1 - Voshol H A1 - Waldt A A1 - Wiedmann B A1 - Van Oostrum J T1 - LC-MALDI MS and MS/MS--an efficient tool in proteome analysis JO - Subcell Biochem Y1 - 2007 SP - 355 EP - 80 VL - 43 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17953403&dopt=Abstract ER - TY - JOUR A1 - Jorg Reinders A1 - Karina Wagner A1 - Rene P. Zahedi A1 - Diana Stojanovski A1 - BeateEyrich A1 - Martin van der Laan A1 - Peter Rehling A1 - Albert Sickmann A1 - Nikolaus Pfanner A1 - Chris Meisinger T1 - Profiling Phosphoproteins of Yeast Mitochondria Reveals a Role of Phosphorylation in Assembly of the ATP Synthase JO - Mol Cell Proteomics Y1 - 2007 SP - 1896 EP - 1906 VL - 6 IS - 11 UR - http://www.mcponline.org/cgi/content/abstract/6/11/1896?etoc ER - TY - JOUR A1 - Shao Chin Lee A1 - Nigel Sim A1 - Marie-Veronique Clement A1 - Sanjiv Kumar Yadav A1 - Shazib Pervaiz T1 - Dominant negative Rac1 attenuates paclitaxel-induced apoptosis in human melanoma cells through upregulation of heat shock protein 27: A functional proteomic analysis JO - PROTEOMICS Y1 - 2007 SP - 4112 EP - 4122 VL - 7 IS - 22 UR - http://dx.doi.org/10.1002/pmic.200700386 ER - TY - JOUR A1 - Wang F A1 - Jiang X A1 - Feng S A1 - Tian R A1 - Jiang X A1 - Han G A1 - Liu H A1 - Ye M A1 - Zou H T1 - Automated injection of uncleaned samples using a ten-port switching valve and a strong cation-exchange trap column for proteome analysis JO - J Chromatogr A Y1 - 2007 SP - 56 EP - 62 VL - 1171 IS - 1-2 UR - http://dx.doi.org/10.1016/j.chroma.2007.09.048 ER - TY - JOUR A1 - Liu ZG A1 - Zhao LN A1 - Liu YW A1 - Li TT A1 - Fan DM A1 - Chen JJ T1 - Activation of Cdc2 Contributes to Apoptosis in HPV E6 Expressing Human Keratinocytes in Response to Therapeutic Agents JO - J Mol Biol Y1 - 2007 SP - 334 EP - 45 VL - 374 IS - 2 UR - http://dx.doi.org/10.1016/j.jmb.2007.09.031 ER - TY - JOUR A1 - Ning K A1 - Leong HW T1 - Algorithm for Peptide sequencing by tandem mass spectrometry based on better preprocessing and anti-symmetric computational model JO - Comput Syst Bioinformatics Conf Y1 - 2007 SP - 19 EP - 30 VL - 6 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17951809&dopt=Abstract ER - TY - JOUR A1 - Onda T A1 - Uzawa K A1 - Nakashima D A1 - Saito K A1 - Iwadate Y A1 - Seki N A1 - Shibahara T A1 - Tanzawa H T1 - Lin-7C/VELI3/MALS-3: An Essential Component in Metastasis of Human Squamous Cell Carcinoma JO - Cancer Res Y1 - 2007 SP - 9643 EP - 8 VL - 67 IS - 20 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17942893&dopt=Abstract ER - TY - JOUR A1 - Han X T1 - Cancer molecular pattern discovery by subspace consensus kernel classification JO - Comput Syst Bioinformatics Conf Y1 - 2007 SP - 55 EP - 65 VL - 6 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17951812&dopt=Abstract ER - TY - JOUR A1 - Zhang LB A1 - Zhu HX A1 - Lun YN A1 - Yan DM A1 - Yu LY A1 - Du BR A1 - Zhu X T1 - Proteomic Analysis of Macrophages: A Potential Way to Identify Novel Proteins Associated with Activation of Macrophages for Tumor Cell Killing JO - Cell Mol Immunol Y1 - 2007 SP - 359 EP - 367 VL - 4 IS - 5 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17976316&dopt=Abstract ER - TY - JOUR A1 - Jonas Grossmann A1 - Bernd Fischer A1 - Katja Baerenfaller A1 - Judith Owiti A1 - Joachim M. Buhmann A1 - Wilhelm Gruissem A1 - Sacha Baginsky T1 - A workflow to increase the detection rate of proteins from unsequenced organisms in high-throughput proteomics experiments JO - PROTEOMICS Y1 - 2007 SP - 4245 EP - 4254 VL - 7 IS - 23 UR - http://dx.doi.org/10.1002/pmic.200700474 ER - TY - JOUR A1 - Bennett KP A1 - Bergeron C A1 - Acar E A1 - Klees RF A1 - Vandenberg SL A1 - Yener B A1 - Plopper GE T1 - Proteomics reveals multiple routes to the osteogenic phenotype in mesenchymal stem cells JO - Y1 - SP - EP - VL - IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17949499&dopt=Abstract ER - TY - JOUR A1 - Samy Gobaa A1 - Emmanuelle Bancel A1 - Geert Kleijer A1 - Peter Stamp A1 - Gérard Branlard T1 - Effect of the 1BL.1RS translocation on the wheat endosperm, as revealed by proteomic analysis JO - PROTEOMICS Y1 - 2007 SP - 4349 EP - 4357 VL - 7 IS - 23 UR - http://dx.doi.org/10.1002/pmic.200700488 ER - TY - JOUR A1 - Wang YD A1 - Wu JD A1 - Jiang ZL A1 - Wang YB A1 - Wang XH A1 - Liu C A1 - Tong MQ T1 - Comparative Proteome Analysis of Neural Retinas from Type 2 Diabetic Rats by Two-dimensional Electrophoresis JO - Curr Eye Res Y1 - 2007 SP - 891 EP - 901 VL - 32 IS - 10 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17963109&dopt=Abstract ER - TY - JOUR A1 - Qiao L A1 - Liu Y A1 - Hudson SP A1 - Yang P A1 - Magner E A1 - Liu B T1 - A Nanoporous Reactor for Efficient Proteolysis JO - Chemistry Y1 - 2007/10/24 SP - EP - VL - IS - UR - http://dx.doi.org/10.1002/chem.200701102 ER - TY - JOUR A1 - Zhang C A1 - Liu P A1 - Wang N A1 - Li Y A1 - Wang L T1 - Comparison of two tandem mass spectrometry-based methods for analyzing the proteome of healthy human lens fibers JO - Mol Vis Y1 - 2007 SP - 1873 EP - 7 VL - 13 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17960125&dopt=Abstract ER - TY - JOUR A1 - Rabilloud T T1 - Keynotes on membrane proteomics JO - Subcell Biochem Y1 - 2007 SP - 3 EP - 11 VL - 43 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17953387&dopt=Abstract ER - TY - JOUR A1 - Tabata T A1 - Sato T A1 - Kuromitsu J A1 - Oda Y T1 - Pseudo Internal Standard Approach for Label-Free Quantitative Proteomics JO - Anal Chem Y1 - 2007 SP - 8440 EP - 5 VL - 79 IS - 22 UR - http://dx.doi.org/10.1021/ac701628m ER - TY - JOUR A1 - Lin YZ A1 - Chen HY A1 - Kao R A1 - Chang SP A1 - Chang SJ A1 - Lai EM T1 - Proteomic analysis of rice defense response induced by probenazole JO - Phytochemistry Y1 - 2007/10/18 SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.phytochem.2007.09.005 ER - TY - JOUR A1 - Liu Y A1 - Liu B A1 - Yang P A1 - Girault HH T1 - Microfluidic enzymatic reactors for proteome research JO - Anal Bioanal Chem Y1 - 2007/10/23 SP - EP - VL - IS - UR - http://dx.doi.org/10.1007/s00216-007-1664-6 ER - TY - JOUR A1 - Manfred Wuhrer A1 - Jord C. Stam A1 - Fleur E. van de Geijn A1 - Carolien A. M. Koeleman A1 - C. Theo Verrips A1 - Radboud J. E. M. Dolhain A1 - Cornelis H. Hokke A1 - André M. Deelder T1 - Glycosylation profiling of immunoglobulin G (IgG) subclasses from human serum JO - PROTEOMICS Y1 - 2007 SP - 4070 EP - 4081 VL - 7 IS - 22 UR - http://dx.doi.org/10.1002/pmic.200700289 ER - TY - JOUR A1 - Roncada P A1 - Begni B A1 - Amadori M A1 - Cristoni S A1 - Archetti IL A1 - Boldetti C A1 - Fortin R A1 - Deriu F A1 - Greppi GF T1 - Blood serum proteome for welfare evaluation in pigs JO - Vet Res Commun Y1 - 2007 SP - 321 EP - 5 VL - 31 IS - Suppl 1 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17682905&dopt=Abstract ER - TY - JOUR A1 - Oliver Drews A1 - Robert Wildgruber A1 - Chenggong Zong A1 - Ute Sukop A1 - Mikkel Nissum A1 - Gerhard Weber A1 - Aldrin V. Gomes A1 - Peipei Ping T1 - Mammalian Proteasome Subpopulations with Distinct Molecular Compositions and Proteolytic Activities JO - Mol Cell Proteomics Y1 - 2007 SP - 2021 EP - 2031 VL - 6 IS - 11 UR - http://www.mcponline.org/cgi/content/abstract/6/11/2021?etoc ER - TY - JOUR A1 - Christoph Wierling A1 - Ralf Herwig A1 - Hans Lehrach T1 - Resources, standards and tools for systems biology JO - Brief Funct Genomic Proteomic Y1 - 2007 SP - 240 EP - 251 VL - 6 IS - 3 UR - http://bfgp.oxfordjournals.org/cgi/content/abstract/6/3/240?etoc ER - TY - JOUR A1 - Juan Madoz-Gurpide A1 - Marta Canamero A1 - Lydia Sanchez A1 - Jose Solano A1 - Patricia Alfonso A1 - J. Ignacio Casal T1 - A Proteomics Analysis of Cell Signaling Alterations in Colorectal Cancer JO - Mol Cell Proteomics Y1 - 2007 SP - 2150 EP - 2164 VL - 6 IS - 12 UR - http://www.mcponline.org/cgi/content/abstract/6/12/2150?etoc ER - TY - JOUR A1 - Jinfeng Liu A1 - Yun Cai A1 - Jinglan Wang A1 - Qi Zhou A1 - Bing Yang A1 - Zhuang Lu A1 - Liyan Jiao A1 - Dongyang Zhang A1 - Shaohui Sui A1 - Ying Jiang A1 - Wantao Ying A1 - Xiaohong Qian T1 - Phosphoproteome profile of human liver Chang's cell based on 2-DE with fluorescence staining and MALDI-TOF/TOF-MS JO - ELECTROPHORESIS Y1 - 2007 SP - 4348 EP - 4358 VL - 28 IS - 23 UR - http://dx.doi.org/10.1002/elps.200600696 ER - TY - JOUR A1 - Yamaguchi Y A1 - Miyagi Y A1 - Baba H T1 - Two-dimensional electrophoresis with cationic detergents: A powerful tool for the proteomic analysis of myelin proteins. 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H. Pinkse A1 - Chris Jopling A1 - Albert J. R. Heck A1 - Jeroen den Hertog A1 - Monique Slijper T1 - Endogenous Phosphotyrosine Signaling in Zebrafish Embryos JO - Mol Cell Proteomics Y1 - 2007 SP - 2088 EP - 2099 VL - 6 IS - 12 UR - http://www.mcponline.org/cgi/content/abstract/6/12/2088?etoc ER - TY - JOUR A1 - Uawithya P A1 - Pisitkun T A1 - Ruttenberg BE A1 - Knepper MA T1 - Transcriptional Profiling of Native Inner Medullary Collecting Duct Cells from Rat Kidney JO - Physiol Genomics Y1 - 2007/10/23 SP - EP - VL - IS - UR - http://dx.doi.org/10.1152/physiolgenomics.00201.2007 ER - TY - JOUR A1 - Fang Yang A1 - Junjun Wang A1 - Xiaojie Li A1 - Tianyi Ying A1 - Shiyan Qiao A1 - Defa Li A1 - Guoyao Wu T1 - 2-DE and MS analysis of interactions between Lactobacillus fermentum I5007 and intestinal epithelial cells JO - ELECTROPHORESIS Y1 - 2007 SP - 4330 EP - 4339 VL - 28 IS - 23 UR - http://dx.doi.org/10.1002/elps.200700166 ER - TY - JOUR A1 - Meng Y A1 - Liu XH A1 - Ma X A1 - Shen Y A1 - Fan L A1 - Leng J A1 - Liu JY A1 - Sha JH T1 - The protein profile of mouse mature cumulus-oocyte complex JO - Biochim Biophys Acta Y1 - 2007 SP - 1477 EP - 90 VL - 1774 IS - 11 UR - http://dx.doi.org/10.1016/j.bbapap.2007.08.026 ER - TY - JOUR A1 - Sanjeev Shukla A1 - Rukmini B. 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Zingde T1 - Tumor antigens eliciting autoantibody response in cancer of gingivo-buccal complex JO - PROTEOMICS - CLINICAL APPLICATIONS Y1 - 2007 SP - 1592 EP - 1604 VL - 1 IS - 12 UR - http://dx.doi.org/10.1002/prca.200700206 ER - TY - JOUR A1 - Kasper CE T1 - Genomics and proteomics methodologies for vulnerable populations research JO - Annu Rev Nurs Res Y1 - 2007 SP - 191 EP - 217 VL - 25 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17958293&dopt=Abstract ER - TY - JOUR A1 - Hunsucker SW A1 - Accurso FJ A1 - Duncan MW T1 - Proteomics in pediatric research and practice JO - Adv Pediatr Y1 - 2007 SP - 9 EP - 28 VL - 54 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17918464&dopt=Abstract ER - TY - JOUR A1 - Wenyan Shen A1 - Hui Liu A1 - Yingnian Yu T1 - Proteomic Analysis of Cellular Responses to Different Concentrations of anti-Benzo(a)pyrene-7,8-dihydrodiol-9,10-epoxide in Human Amniotic Epithelial FL Cells JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2007 SP - 4737 EP - 4748 VL - 6 IS - 12 UR - http://dx.doi.org/10.1021/pr070406b ER - TY - JOUR A1 - Liyuan Li A1 - Masaru Wada A1 - Atsushi Yokota T1 - Cytoplasmic proteome reference map for a glutamic acid-producing Corynebacterium glutamicum ATCC 14067 JO - PROTEOMICS Y1 - 2007 SP - 4317 EP - 4322 VL - 7 IS - 23 UR - http://dx.doi.org/10.1002/pmic.200700269 ER - TY - JOUR A1 - Patrauchan MA A1 - Sarkisova SA A1 - Franklin MJ T1 - Strain-specific proteome responses of Pseudomonas aeruginosa to biofilm-associated growth and to calcium JO - Microbiology Y1 - 2007 SP - 3838 EP - 3851 VL - 153 IS - Pt 11 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17975093&dopt=Abstract ER - TY - JOUR A1 - Masako Nakanishi A1 - Antoine Ménoret A1 - Glenn S. Belinsky A1 - Charles Giardina A1 - Cassandra A. Godman A1 - Anthony T. Vella A1 - Daniel W. Rosenberg T1 - Utilizing endoscopic technology to reveal real-time proteomic alterations in response to chemoprevention JO - PROTEOMICS - CLINICAL APPLICATIONS Y1 - 2007 SP - 1660 EP - 1666 VL - 1 IS - 12 UR - http://dx.doi.org/10.1002/prca.200700545 ER - TY - JOUR A1 - Yanwei Sun A1 - Xinyu Deng A1 - Wenrui Li A1 - Yujuan Yan A1 - Handong Wei A1 - Ying Jiang A1 - Fuchu He T1 - Liver proteome analysis of adaptive response in rat immediately after partial hepatectomy JO - PROTEOMICS Y1 - 2007 SP - 4398 EP - 4407 VL - 7 IS - 23 UR - http://dx.doi.org/10.1002/pmic.200600913 ER - TY - JOUR A1 - Jolyne Drummelsmith A1 - Eric Winstall A1 - Michel G. Bergeron A1 - Guy G. Poirier A1 - Marc Ouellette T1 - Comparative Proteomics Analyses Reveal a Potential Biomarker for the Detection of Vancomycin-Intermediate Staphylococcus aureus Strains JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2007 SP - 4690 EP - 4702 VL - 6 IS - 12 UR - http://dx.doi.org/10.1021/pr070521m ER - TY - JOUR A1 - Diedrich M A1 - Tadic J A1 - Mao L A1 - Wacker MA A1 - Nebrich G A1 - Hetzer R A1 - Regitz-Zagrosek V A1 - Klose J T1 - Heart protein expression related to age and sex in mice and humans JO - Int J Mol Med Y1 - 2007 SP - 865 EP - 74 VL - 20 IS - 6 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17982696&dopt=Abstract ER - TY - JOUR A1 - Jordan JR A1 - Moore EE A1 - Damle SS A1 - Eckels P A1 - Johnson JL A1 - Roach JP A1 - Redzic JS A1 - Hansen KC A1 - Banerjee A T1 - Gelsolin is Depleted in Post-Shock Mesenteric Lymph JO - J Surg Res Y1 - 2007 SP - 130 EP - 5 VL - 143 IS - 1 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17950082&dopt=Abstract ER - TY - JOUR A1 - Warsinke A T1 - Electrochemical Biochips for Protein Analysis JO - Adv Biochem Eng Biotechnol Y1 - 2007/10/11 SP - EP - VL - IS - UR - http://dx.doi.org/10.1007/10_2007_079 ER - TY - JOUR A1 - Martin Kussmann A1 - Michael Affolter A1 - Kornél Nagy A1 - Birgit Holst A1 - Laurent B. Fay T1 - Mass spectrometry in nutrition: Understanding dietary health effects at the molecular level JO - Mass Spectrometry Reviews Y1 - 2007 SP - 727 EP - 750 VL - 26 IS - 6 UR - http://dx.doi.org/10.1002/mas.20147 ER - TY - JOUR A1 - David M. Good A1 - Matthew Wirtala A1 - Graeme C. McAlister A1 - Joshua J. Coon T1 - Performance Characteristics of Electron Transfer Dissociation Mass Spectrometry JO - Mol Cell Proteomics Y1 - 2007 SP - 1942 EP - 1951 VL - 6 IS - 11 UR - http://www.mcponline.org/cgi/content/abstract/6/11/1942?etoc ER - TY - JOUR A1 - Bruce A. Julian A1 - Stefan Wittke A1 - Jan Novak A1 - David M. Good A1 - Joshua J. Coon A1 - Markus Kellmann A1 - Petra Zürbig A1 - Eric Schiffer A1 - Marion Haubitz A1 - Zina Moldoveanu A1 - Shannon M. Calcatera A1 - Robert J. Wyatt A1 - Josef Sýkora A1 - Eva Sládková A1 - Ondrej Hes A1 - Harald Mischak A1 - Brendan T1 - Electrophoretic methods for analysis of urinary polypeptides in IgA-associated renal diseases JO - ELECTROPHORESIS Y1 - 2007 SP - 4469 EP - 4483 VL - 28 IS - 23 UR - http://dx.doi.org/10.1002/elps.200700237 ER - TY - JOUR A1 - Alves P A1 - Arnold RJ A1 - Novotny MV A1 - Radivojac P A1 - Reilly JP A1 - Tang H T1 - Advancement in protein inference from shotgun proteomics using peptide detectability JO - Pac Symp Biocomput Y1 - 2007 SP - 409 EP - 20 VL - 12 IS - UR - http://psb.stanford.edu/psb-online/proceedings/psb07/abstracts/2007_p409.html ER - TY - JOUR A1 - David M. Good A1 - Visith Thongboonkerd A1 - Jan Novak A1 - Jean-Loup Bascands A1 - Joost P. Schanstra A1 - Joshua J. Coon A1 - Anna Dominiczak A1 - Harald Mischak T1 - Body Fluid Proteomics for Biomarker Discovery: Lessons from the Past Hold the Key to Success in the Future JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2007 SP - 4549 EP - 4555 VL - 6 IS - 12 UR - http://dx.doi.org/10.1021/pr070529w ER - TY - JOUR A1 - Bai F A1 - Witzmann FA T1 - Synaptosome proteomics JO - Subcell Biochem Y1 - 2007 SP - 77 EP - 98 VL - 43 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17953392&dopt=Abstract ER - TY - JOUR A1 - Katz-Jaffe MG A1 - Larman MG A1 - Sheehan CB A1 - Gardner DK T1 - Exposure of mouse oocytes to 1,2-propanediol during slow freezing alters the proteome JO - Fertil Steril Y1 - 2007/10/31 SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.fertnstert.2007.03.098 ER - TY - JOUR A1 - Debora Bonenfant A1 - Harry Towbin A1 - Michele Coulot A1 - Patrick Schindler A1 - Dieter R. Mueller A1 - Jan van Oostrum T1 - Analysis of Dynamic Changes in Post-translational Modifications of Human Histones during Cell Cycle by Mass Spectrometry JO - Mol Cell Proteomics Y1 - 2007 SP - 1917 EP - 1932 VL - 6 IS - 11 UR - http://www.mcponline.org/cgi/content/abstract/6/11/1917?etoc ER - TY - JOUR A1 - Paolo Nanni A1 - Daniela Parisi A1 - Giulia Roda A1 - Monica Casale A1 - Andrea Belluzzi A1 - Enrico Roda A1 - Lloyd Mayer A1 - Aldo Roda T1 - Serum protein profiling in patients with inflammatory bowel diseases using selective solid-phase bulk extraction, matrix-assisted laser desorption/ionization time-of-flight mass spectrometry and chemometric data analysis JO - Rapid Communications in Mass Spectrometry Y1 - 2007 SP - 4142 EP - 4148 VL - 21 IS - 24 UR - http://dx.doi.org/10.1002/rcm.3323 ER - TY - JOUR A1 - Kastrinaki MC A1 - Sidiropoulos P A1 - Roche S A1 - Ringe J A1 - Lehmann S A1 - Kritikos H A1 - Vlahava VM A1 - Delorme B A1 - Eliopoulos G A1 - Jorgensen C A1 - Charbord P A1 - Haupl T A1 - Boumpas DT A1 - Papadaki HA T1 - Functional, molecular and proteomic characterization of bone marrow mesenchymal stem cells in rheumatoid arthritis JO - Ann Rheum Dis Y1 - 2007/10/5 SP - EP - VL - IS - UR - http://dx.doi.org/10.1136/ard.2007.076174 ER - TY - JOUR A1 - Gilbert S. Omenn A1 - Ruedi Aebersold A1 - Young-Ki Paik T1 - HUPO Plasma Proteome Project 2007 Workshop Report JO - Mol Cell Proteomics Y1 - 2007 SP - 2252 EP - 2253 VL - 6 IS - 12 UR - http://www.mcponline.org/cgi/content/full/6/12/2252?etoc ER - TY - JOUR A1 - Xin Zhao A1 - Quan Li A1 - Lei Zhao A1 - XiaoPing Pu T1 - Proteome analysis of substantia nigra and striatal tissue in the mouse MPTP model of Parkinson's disease JO - PROTEOMICS - CLINICAL APPLICATIONS Y1 - 2007 SP - 1559 EP - 1569 VL - 1 IS - 12 UR - http://dx.doi.org/10.1002/prca.200700077 ER - TY - JOUR A1 - Sandor Spisak A1 - Zsolt Tulassay A1 - Bela Molnar A1 - Andras Guttman T1 - Protein microchips in biomedicine and biomarker discovery JO - ELECTROPHORESIS Y1 - 2007 SP - 4261 EP - 4273 VL - 28 IS - 23 UR - http://dx.doi.org/10.1002/elps.200700539 ER - TY - JOUR A1 - Rafael Montes-Nieto A1 - Carlos A. Fuentes-Almagro A1 - Daniel Bonilla-Valverde A1 - María-José Prieto-Álamo A1 - Juan Jurado A1 - Montserrat Carrascal A1 - José Luis Gómez-Ariza A1 - Juan López-Barea A1 - Carmen Pueyo T1 - Proteomics in free-living Mus spretus to monitor terrestrial ecosystems JO - PROTEOMICS Y1 - 2007 SP - 4376 EP - 4387 VL - 7 IS - 23 UR - http://dx.doi.org/10.1002/pmic.200700409 ER - TY - JOUR A1 - Northen TR A1 - Yanes O A1 - Northen MT A1 - Marrinucci D A1 - Uritboonthai W A1 - Apon J A1 - Golledge SL A1 - Nordstrom A A1 - Siuzdak G T1 - Clathrate nanostructures for mass spectrometry JO - Nature Y1 - 2007 SP - 1033 EP - 6 VL - 449 IS - 7165 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17960240&dopt=Abstract ER - TY - JOUR A1 - Dubravko Rendi? A1 - Iain B. H. Wilson A1 - Gert Lubec A1 - Martin Gutternigg A1 - Friedrich Altmann A1 - Renaud Léonard T1 - Adaptation of the ?in-gel release method? to N-glycome analysis of low-milligram amounts of material JO - ELECTROPHORESIS Y1 - 2007 SP - 4484 EP - 4492 VL - 28 IS - 23 UR - http://dx.doi.org/10.1002/elps.200700098 ER - TY - JOUR A1 - Li J A1 - Wang T A1 - Zhang Z A1 - Pan Y T1 - Proteomic Analysis of Royal Jelly from Three Strains of Western Honeybees (Apis mellifera) JO - J Agric Food Chem Y1 - 2007 SP - 8411 EP - 8422 VL - 55 IS - 21 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17927147&dopt=Abstract ER - TY - JOUR A1 - Qiangwei Xia A1 - Tiansong Wang A1 - Fred Taub A1 - Yoonsuk Park A1 - Cindy A. Capestany A1 - Richard J. Lamont A1 - Murray Hackett T1 - Quantitative proteomics of intracellular Porphyromonas gingivalis JO - PROTEOMICS Y1 - 2007 SP - 4323 EP - 4337 VL - 7 IS - 23 UR - http://dx.doi.org/10.1002/pmic.200700543 ER - TY - JOUR A1 - Begoña Casado A1 - Paolo Iadarola A1 - Lewis K. Pannell A1 - Maurizio Luisetti A1 - Angelo Corsico A1 - Elena Ansaldo A1 - Ilaria Ferrarotti A1 - Piera Boschetto A1 - James N. Baraniuk T1 - Protein Expression in Sputum of Smokers and Chronic Obstructive Pulmonary Disease Patients: A Pilot Study by CapLC-ESI-Q-TOF JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2007 SP - 4615 EP - 4623 VL - 6 IS - 12 UR - http://dx.doi.org/10.1021/pr070440q ER - TY - JOUR A1 - Barnes FA A1 - Bingle L A1 - Bingle CD T1 - Pulmonary Genomics, Proteomics and PLUNCs JO - Am J Respir Cell Mol Biol Y1 - 2007/11/1 SP - EP - VL - IS - UR - http://dx.doi.org/10.1165/rcmb.2007-0388TR ER - TY - JOUR A1 - Ekstrom S A1 - Wallman L A1 - Helldin G A1 - Nilsson J A1 - Marko-Varga G A1 - Laurell T T1 - Polymeric integrated selective enrichment target (ISET) for solid-phase-based sample preparation in MALDI-TOF MS JO - J Mass Spectrom Y1 - 2007 SP - 1445 EP - 1452 VL - 42 IS - 11 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17960572&dopt=Abstract ER - TY - JOUR A1 - Elliott MH A1 - Nash ZA A1 - Takemori N A1 - Fliesler SJ A1 - McClellan ME A1 - Naash MI T1 - Differential distribution of proteins and lipids in detergent-resistant and detergent-soluble domains in rod outer segment plasma membranes and disks JO - J Neurochem Y1 - 2007/10/18 SP - EP - VL - IS - UR - http://dx.doi.org/10.1111/j.1471-4159.2007.04971.x ER - TY - JOUR A1 - Peirce MJ A1 - Saklatvala J A1 - Cope AP A1 - Wait R T1 - Mapping lymphocyte plasma membrane proteins: a proteomic approach JO - Methods Mol Med Y1 - 2007 SP - 361 EP - 7 VL - 136 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17983160&dopt=Abstract ER - TY - JOUR A1 - Deepti Bhushan A1 - Aarti Pandey A1 - Mani Kant Choudhary A1 - Asis Datta A1 - Subhra Chakraborty A1 - Niranjan Chakraborty T1 - Comparative Proteomics Analysis of Differentially Expressed Proteins in Chickpea Extracellular Matrix during Dehydration Stress JO - Mol Cell Proteomics Y1 - 2007 SP - 1868 EP - 1884 VL - 6 IS - 11 UR - http://www.mcponline.org/cgi/content/abstract/6/11/1868?etoc ER - TY - JOUR A1 - Laspiur JP A1 - Anderson ER A1 - Ciborowski P A1 - Wojna V A1 - Rozek W A1 - Duan F A1 - Mayo R A1 - Rodriguez E A1 - Plaud-Valentin M A1 - Rodriguez-Orengo J A1 - Gendelman HE A1 - Melendez LM T1 - CSF proteomic fingerprints for HIV-associated cognitive impairment JO - J Neuroimmunol Y1 - 2007 SP - 157 EP - 70 VL - 192 IS - 1-2 UR - http://dx.doi.org/10.1016/j.jneuroim.2007.08.004 ER - TY - JOUR A1 - Ru Chen A1 - Sheng Pan A1 - Ruedi Aebersold A1 - Teresa A. Brentnall T1 - Proteomics studies of pancreatic cancer JO - PROTEOMICS - CLINICAL APPLICATIONS Y1 - 2007 SP - 1582 EP - 1591 VL - 1 IS - 12 UR - http://dx.doi.org/10.1002/prca.200700414 ER - TY - JOUR A1 - Timperio AM A1 - D'Amici GM A1 - Barta C A1 - Loreto F A1 - Zolla L T1 - Proteomic, pigment composition, and organization of thylakoid membranes in iron-deficient spinach leaves JO - J Exp Bot Y1 - 2007 SP - 3695 EP - 3710 VL - 58 IS - 13 UR - http://dx.doi.org/10.1093/jxb/erm219 ER - TY - JOUR A1 - Jinshan Wang A1 - Peter Gutierrez A1 - Nathan Edwards A1 - Catherine Fenselau T1 - Integration of 18O Labeling and Solution Isoelectric Focusing in a Shotgun Analysis of Mitochondrial Proteins JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2007 SP - 4601 EP - 4607 VL - 6 IS - 12 UR - http://dx.doi.org/10.1021/pr070401e ER - TY - JOUR A1 - Waters M A1 - Stasiewicz S A1 - Merrick BA A1 - Tomer K A1 - Bushel P A1 - Paules R A1 - Stegman N A1 - Nehls G A1 - Yost KJ A1 - Johnson CH A1 - Gustafson SF A1 - Xirasagar S A1 - Xiao N A1 - Huang CC A1 - Boyer P A1 - Chan DD A1 - Pan Q A1 - Gong H A1 - Taylor J A1 - Choi D A1 - Rashid A A1 - Ahmed A A1 - Howle R A1 - Selkirk J A1 - Tennant R A1 - Fos T1 - CEBS Chemical Effects in Biological Systems: a public data repository integrating study design and toxicity data with microarray and proteomics data JO - Nucleic Acids Res Y1 - 2007/10/25 SP - EP - VL - IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17962311&dopt=Abstract ER - TY - JOUR A1 - Jain KK T1 - Recent advances in clinical oncoproteomics JO - J BUON Y1 - 2007 SP - S31 EP - 8 VL - 12 IS - Suppl 1 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17935275&dopt=Abstract ER - TY - JOUR A1 - Paul Dowling A1 - Lorraine O'Driscoll A1 - Paula Meleady A1 - Michael Henry A1 - Shunil Roy A1 - Jo Ballot A1 - Michael Moriarty A1 - John Crown A1 - Martin Clynes T1 - 2-D difference gel electrophoresis of the lung squamous cell carcinoma versus normal sera demonstrates consistent alterations in the levels of ten specific proteins JO - ELECTROPHORESIS Y1 - 2007 SP - 4302 EP - 4310 VL - 28 IS - 23 UR - http://dx.doi.org/10.1002/elps.200700246 ER - TY - JOUR A1 - Robert Caesar A1 - Johan Palmfeldt A1 - John S. Gustafsson A1 - Ellinor Pettersson A1 - Sayed Hossein Hashemi A1 - Anders Blomberg T1 - Comparative proteomics of industrial lager yeast reveals differential expression of the cerevisiae and non-cerevisiae parts of their genomes JO - PROTEOMICS Y1 - 2007 SP - 4135 EP - 4147 VL - 7 IS - 22 UR - http://dx.doi.org/10.1002/pmic.200601020 ER - TY - JOUR A1 - Harris L A1 - Fritsche H A1 - Mennel R A1 - Norton L A1 - Ravdin P A1 - Taube S A1 - Somerfield MR A1 - Hayes DF A1 - Bast RC Jr T1 - American Society of Clinical Oncology 2007 Update of Recommendations for the Use of Tumor Markers in Breast Cancer JO - J Clin Oncol Y1 - 2007 SP - 5287 EP - 312 VL - 25 IS - 33 UR - http://dx.doi.org/10.1200/JCO.2007.14.2364 ER - TY - JOUR A1 - Matthew J. McKay A1 - Jamie Sherman A1 - Matthew T. Laver A1 - Mark S. Baker A1 - Stephen J. Clarke A1 - Mark P. Molloy T1 - The development of multiple reaction monitoring assays for liver-derived plasma proteins JO - PROTEOMICS - CLINICAL APPLICATIONS Y1 - 2007 SP - 1570 EP - 1581 VL - 1 IS - 12 UR - http://dx.doi.org/10.1002/prca.200700305 ER - TY - JOUR A1 - José Ángel Gómez-Ruiz A1 - Mercedes Ramos A1 - Isidra Recio T1 - Identification of novel angiotensin-converting enzyme-inhibitory peptides from ovine milk proteins by CE-MS and chromatographic techniques JO - ELECTROPHORESIS Y1 - 2007 SP - 4202 EP - 4211 VL - 28 IS - 22 UR - http://dx.doi.org/10.1002/elps.200700324 ER - TY - JOUR A1 - Dong-Sic Choi A1 - Jae-Min Lee A1 - Gun Wook Park A1 - Hyeon-Woo Lim A1 - Joo Young Bang A1 - Yoon-Keun Kim A1 - Kyung-Hoon Kwon A1 - Ho Jeong Kwon A1 - Kwang Pyo Kim A1 - Yong Song Gho T1 - Proteomic Analysis of Microvesicles Derived from Human Colorectal Cancer Cells JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2007 SP - 4646 EP - 4655 VL - 6 IS - 12 UR - http://dx.doi.org/10.1021/pr070192y ER - TY - JOUR A1 - Andrew Smith A1 - Kei Cheung A1 - Michael Krauthammer A1 - Martin Schultz A1 - Mark Gerstein T1 - Leveraging the structure of the Semantic Web to enhance information retrieval for proteomics JO - Bioinformatics Y1 - 2007 SP - 3073 EP - 3079 VL - 23 IS - 22 UR - http://bioinformatics.oxfordjournals.org/cgi/content/abstract/23/22/3073?etoc ER - TY - JOUR A1 - Qingzhong Wang A1 - Jun Yue A1 - Lu Zhang A1 - Ying Xu A1 - Jiazhen Chen A1 - Min Zhang A1 - Bingdong Zhu A1 - Hongyan Wang A1 - Honghai Wang T1 - A Newly Identified 191A/C Mutation in the Rv2629 Gene that Was Significantly Associated with Rifampin Resistance in Mycobacterium tuberculosis JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2007 SP - 4564 EP - 4571 VL - 6 IS - 12 UR - http://dx.doi.org/10.1021/pr070242z ER - TY - JOUR A1 - Gouraud SS A1 - Yao ST A1 - Heesom KJ A1 - Paton JF A1 - Murphy D T1 - 14-3-3 proteins within the hypothalamic-neurohypophyseal system of the osmotically stressed rat: transcriptomic and proteomic studies JO - J Neuroendocrinol Y1 - 2007 SP - 913 EP - 22 VL - 19 IS - 11 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=17927670&dopt=Abstract ER -