%A Mavroudi
%A Seferina; Papadimitriou
%A Stergios; Kossida
%A Sophia; Likothanassis
%A Spyridon D.; Vlahou
%A Antonia
%T Computational Methods and Algorithms for Mass-Spectrometry Based Differential Proteomics
%0 Journal Article
%D 2007
%J Current Proteomics
%P 223-234
%V 4
%N 4
%U http://www.ingentaconnect.com/content/ben/cp/2007/00000004/00000004/art00004

%A Xin Yi
%A John M. Luk
%A Nikki P. Lee
%A Jirun Peng
%A Xisheng Leng
%A Xin-Yuan Guan
%A George K. Lau
%A Laura Beretta
%A Sheung-Tat Fan
%T Association of Mortalin (HSPA9) with Liver Cancer Metastasis and Prediction for Early Tumor Recurrence
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 315-325
%V 7
%N 2
%U http://www.mcponline.org/cgi/content/abstract/7/2/315?etoc

%A Thomas O. Metz
%A Wei-Jun Qian
%A Jon M. Jacobs
%A Marina A. Gritsenko
%A Ronald J. Moore
%A Ashoka D. Polpitiya
%A Matthew E. Monroe
%A David G. Camp II
%A Patricia W. Mueller
%A Richard D. Smith
%T Application of Proteomics in the Discovery of Candidate Protein Biomarkers in a Diabetes Autoantibody Standardization Program Sample Subset
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 698-707
%V 7
%N 02
%U http://dx.doi.org/10.1021/pr700606w

%A Lin WY
%A Chang JY
%A Hish CH
%A Pan TM
%T Profiling the Monascus pilosus Proteome during Nitrogen Limitation
%0 Journal Article
%D 2008
%J J Agric Food Chem
%P 433-41
%V 56
%N 2
%U http://dx.doi.org/10.1021/jf072420e

%A Mertens B
%T Organizing a competition on clinical mass spectrometry based proteomic diagnosis
%0 Journal Article
%D 
%J 
%P -
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%A Sheng Pan
%A John Rush
%A Elaine R. Peskind
%A Douglas Galasko
%A Kathryn Chung
%A Joseph Quinn
%A Joseph Jankovic
%A James B. Leverenz
%A Cyrus Zabetian
%A Catherine Pan
%A Yan Wang
%A Jung Hun Oh
%A Jean Gao
%A Jianpeng Zhang
%A Thomas Montine
%A Jing Zhang
%T Application of Targeted Quantitative Proteomics Analysis in Human Cerebrospinal Fluid Using a Liquid Chromatography Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Tandem Mass Spectrometer (LC MALDI TOF/TOF) Platform
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 720-730
%V 7
%N 02
%U http://dx.doi.org/10.1021/pr700630x

%A Smit S
%A Hoefsloot HC
%A Smilde AK
%T Statistical data processing in clinical proteomics
%0 Journal Article
%D 2007
%J J Chromatogr B Analyt Technol Biomed Life Sci
%P -
%V 
%N 
%U http://dx.doi.org/10.1016/j.jchromb.2007.10.042
%8 Nov 4, 2007

%A Vathany Kulasingam
%A Christopher R. Smith
%A Ihor Batruch
%A Alan Buckler
%A Douglas A. Jeffery
%A Eleftherios P. Diamandis
%T “Product Ion Monitoring” Assay for Prostate-Specific Antigen in Serum Using a Linear Ion-Trap
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 640-647
%V 7
%N 02
%U http://dx.doi.org/10.1021/pr7005999

%A Abu-Farha M
%A Elisma F
%A Figeys D
%T Identification of Protein-Protein Interactions by Mass Spectrometry Coupled Techniques
%0 Journal Article
%D 2008
%J Adv Biochem Eng Biotechnol
%P -
%V 
%N 
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%8 Jan 29, 2008

%A Ana Pereira Navaza
%A Jorge Ruiz Encinar
%A Montserrat Carrascal
%A Joaquín Abi n
%A Alfredo Sanz-Medel
%T Absolute and Site-Specific Quantification of Protein Phosphorylation Using Integrated Elemental and Molecular Mass Spectrometry: Its Potential To Assess Phosphopeptide Enrichment Procedures
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 1777-1787
%V 80
%N 5
%U http://dx.doi.org/10.1021/ac7022316

%A Heping Cao
%A Leesa J Deterding
%A Perry J Blackshear
%T Phosphorylation site analysis of the anti-inflammatory and mRNA-destabilizing protein tristetraprolin
%0 Journal Article
%D 2007
%J Expert Review of Proteomics
%P 711-726
%V 4
%N 6
%U http://dx.doi.org/10.1586/14789450.4.6.711

%A Lucia De Monte
%A Francesca Sanvito
%A Stefano Olivieri
%A Fiammetta Viganò
%A Claudio Doglioni
%A Matteo Frasson
%A Marco Braga
%A Angela Bachi
%A Paolo Dellabona
%A Maria Pia Protti
%A Massimo Alessio
%T Serological Immunoreactivity against Colon Cancer Proteome Varies upon Disease Progression
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 504-514
%V 7
%N 02
%U http://dx.doi.org/10.1021/pr070360m

%A Gevaert K
%A Impens F
%A Van Damme P
%A Ghesquière B
%A Hanoulle X
%A Vandekerckhove J
%T Applications of diagonal chromatography for proteome-wide characterization of protein modifications and activity-based analyses
%0 Journal Article
%D 2007
%J FEBS J
%P 6277-89
%V 274
%N 24
%U http://dx.doi.org/10.1111/j.1742-4658.2007.06149.x

%A Ye J
%A Liu H
%A Kirmiz C
%A Lebrilla CB
%A Rocke DM
%T On the analysis of glycomics mass spectrometry data via the regularized area under the ROC curve
%0 Journal Article
%D 
%J 
%P -
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%N 
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%A Mary K. Doherty
%A Robert J. Beynon
%A Phillip D. Whitfield
%T Proteomics and naturally occurring animal diseases: Opportunities for animal and human medicine
%0 Journal Article
%D 2008
%J PROTEOMICS - CLINICAL APPLICATIONS
%P 135-141
%V 2
%N 2
%U http://dx.doi.org/10.1002/prca.200780085

%T New informatics customer initiative launched by ThermoFisher Scientific, Inc
%0 Journal Article
%D 2007
%J Expert Review of Proteomics
%P 701-703
%V 4
%N 6
%U http://dx.doi.org/10.1586/14789450.4.6.701

%A McLerran D
%A Grizzle WE
%A Feng Z
%A Thompson IM
%A Bigbee WL
%A Cazares LH
%A Chan DW
%A Dahlgren J
%A Diaz J
%A Kagan J
%A Lin D
%A Malik G
%A Oelschlager D
%A Partin A
%A Randolph T
%A Sokoll L
%A Srivastava S
%A Srivastava S
%A Thornquist M
%A Troyer D
%A Wright GL
%A Zhang Z
%A Zhu L
%A Semmes
%T SELDI-TOF MS Whole Serum Proteomic Profiling with IMAC Surface Does Not Reliably Detect Prostate Cancer
%0 Journal Article
%D 2008
%J Clin Chem
%P 53-60
%V 54
%N 1
%U http://dx.doi.org/10.1373/clinchem.2007.091496

%A Oliveira-Carvalho AL
%A Guimarães PR
%A Abreu PA
%A Dutra DL
%A Junqueira-de-Azevedo IL
%A Rodrigues CR
%A Ho PL
%A Castro HC
%A Zingali RB
%T Identification and characterization of a new member of snake venom thrombin inhibitors from Bothrops insularis using a proteomic approach
%0 Journal Article
%D 2007
%J Toxicon
%P -
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%N 
%U http://dx.doi.org/10.1016/j.toxicon.2007.11.026
%8 Dec 14, 2007

%A Mathias Vandenbogaert
%A Sébastien Li-Thiao-Té
%A Hans-Michael Kaltenbach
%A Runxuan Zhang
%A Tero Aittokallio
%A Benno Schwikowski
%T Alignment of LC-MS images, with applications to biomarker discovery and protein identification
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 650-672
%V 8
%N 4
%U http://dx.doi.org/10.1002/pmic.200700791

%A Mark H. Chin
%A Wei-Jun Qian
%A Haixing Wang
%A Vladislav A. Petyuk
%A Joshua S. Bloom
%A Daniel M. Sforza
%A Goran Laćan
%A Dahai Liu
%A Arshad H. Khan
%A Rita M. Cantor
%A Diana J. Bigelow
%A William P. Melega
%A David G. Camp II
%A Richard D. Smith
%A Desmond J. Smith
%T Mitochondrial Dysfunction, Oxidative Stress, and Apoptosis Revealed by Proteomic and Transcriptomic Analyses of the Striata in Two Mouse Models of Parkinson’s Disease
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 666-677
%V 7
%N 02
%U http://dx.doi.org/10.1021/pr070546l

%A Mayte Coiras
%A Emilio Camafeita
%A María Rosa López-Huertas
%A Enrique Calvo
%A Juan Antonio López
%A José Alcamí
%T Application of proteomics technology for analyzing the interactions between host cells and intracellular infectious agents
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 852-873
%V 8
%N 4
%U http://dx.doi.org/10.1002/pmic.200700664

%A Komatsu
%A Setsuko; Toorchi
%A Mahmoud; Yukawa
%A Kiyoshi
%T Soybean Proteomics
%0 Journal Article
%D 2007
%J Current Proteomics
%P 182-186
%V 4
%N 3
%U http://www.ingentaconnect.com/content/ben/cp/2007/00000004/00000003/art00007

%A Mansuy
%A Isabelle M.; Tweedie-Cullen
%A Ry Y.; Wollscheid
%A Bernd; Livingstone-Zatchej
%A Magdalena
%T Neuroproteomics and the Detection of Regulatory Phosphosites
%0 Journal Article
%D 2007
%J Current Proteomics
%P 209-222
%V 4
%N 4
%U http://www.ingentaconnect.com/content/ben/cp/2007/00000004/00000004/art00003

%A Maureen K. Bunger
%A Benjamin J. Cargile
%A Anne Ngunjiri
%A Jonathan L. Bundy
%A James L. Stephenson
%A Jr
%T Automated Proteomics of E. coli via Top-Down Electron-Transfer Dissociation Mass Spectrometry
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 1459-1467
%V 80
%N 5
%U http://dx.doi.org/10.1021/ac7018409

%A Berndt U
%A Philipsen L
%A Bartsch S
%A Wiedenmann B
%A Baumgart DC
%A Hämmerle M
%A Sturm A
%T Systematic high-content proteomic analysis reveals substantial immunologic changes in colorectal cancer
%0 Journal Article
%D 2008
%J Cancer Res
%P 880-8
%V 68
%N 3
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18245490&dopt=Abstract

%A Mistry J
%A Finn R
%T Pfam: a domain-centric method for analyzing proteins and proteomes
%0 Journal Article
%D 2007
%J Methods Mol Biol
%P 43-58
%V 396
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%A Rui Cao
%A QuanYuan He
%A Jian Zhou
%A QuanZe He
%A Zhen Liu
%A XianChun Wang
%A Ping Chen
%A Jingyun Xie
%A SongPing Liang
%T High-Throughput Analysis of Rat Liver Plasma Membrane Proteome by a Nonelectrophoretic In-Gel Tryptic Digestion Coupled with Mass Spectrometry Identification
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 535-545
%V 7
%N 02
%U http://dx.doi.org/10.1021/pr070411f

%A Chen CS
%A Korobkova E
%A Chen H
%A Zhu J
%A Jian X
%A Tao SC
%A He C
%A Zhu H
%T A proteome chip approach reveals new DNA damage recognition activities in Escherichia coli
%0 Journal Article
%D 2008
%J Nat Methods
%P 69-74
%V 5
%N 1
%U http://dx.doi.org/10.1038/nmeth1148

%A Daemen A
%A Gevaert O
%A De Bie T
%A Debucquoy A
%A Machiels JP
%A De Moor B
%A Haustermans K
%T Integrating microarray and proteomics data to predict the response on cetuximab in patients with rectal cancer
%0 Journal Article
%D 2008
%J Pac Symp Biocomput
%P 166-77
%V 1
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%A Zhang
%A Xiang; Oh
%A Cheolhwan; Riley
%A Catherine P.; Buck
%A Charles
%T Current Status of Computational Approaches for Protein Identification Using Tandem Mass Spectra
%0 Journal Article
%D 2007
%J Current Proteomics
%P 121-130
%V 4
%N 3
%U http://www.ingentaconnect.com/content/ben/cp/2007/00000004/00000003/art00001

%A Zhen Y
%A Qi JL
%A Wang SS
%A Su J
%A Xu GH
%A Zhang MS
%A Miao L
%A Peng XX
%A Tian D
%A Yang YH
%T Comparative proteome analysis of differentially expressed proteins induced by Al toxicity in soybean
%0 Journal Article
%D 2007
%J Physiol Plant
%P 542-54
%V 131
%N 4
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18251846&dopt=Abstract

%A Yin QY
%A de Groot PW
%A de Koster CG
%A Klis FM
%T Mass spectrometry-based proteomics of fungal wall glycoproteins
%0 Journal Article
%D 2008
%J Trends Microbiol
%P 20-6
%V 16
%N 1
%U http://dx.doi.org/10.1016/j.tim.2007.10.011

%A Jawon Seo
%A Jaeho Jeong
%A Young Mee Kim
%A Narae Hwang
%A Eunok Paek
%A Kong-Joo Lee
%T Strategy for Comprehensive Identification of Post-translational Modifications in Cellular Proteins, Including Low Abundant Modifications: Application to Glyceraldehyde-3-phosphate Dehydrogenase
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 587-602
%V 7
%N 02
%U http://dx.doi.org/10.1021/pr700657y

%A Kothandaraman Narasimhan
%A Zhao Changqing
%A Mahesh Choolani
%T Ovarian cancer proteomics: Many technologies one goal
%0 Journal Article
%D 2008
%J PROTEOMICS - CLINICAL APPLICATIONS
%P 195-218
%V 2
%N 2
%U http://dx.doi.org/10.1002/prca.200780003

%A Sandra Orchard
%T Proteomics: from technology development to biomarker applications
%0 Journal Article
%D 2007
%J Expert Review of Proteomics
%P 709-710
%V 4
%N 6
%U http://dx.doi.org/10.1586/14789450.4.6.709

%A Haglund L
%A Bernier SM
%A Onnerfjord P
%A Recklies AD
%T Proteomic analysis of the LPS-induced stress response in rat chondrocytes reveals induction of innate immune response components in articular cartilage
%0 Journal Article
%D 2008
%J Matrix Biol
%P 107-18
%V 27
%N 2
%U http://dx.doi.org/10.1016/j.matbio.2007.09.009

%A Sung Yun Jung
%A Yehua Li
%A Yi Wang
%A Yue Chen
%A Yingming Zhao
%A Jun Qin
%T Complications in the Assignment of 14 and 28 Da Mass Shift Detected by Mass Spectrometry as in Vivo Methylation from Endogenous Proteins
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 1721-1729
%V 80
%N 5
%U http://dx.doi.org/10.1021/ac7021025

%A Chuan Chen
%A Caoxin Huang
%A Shouhui Chen
%A Jie Liang
%A Wenbo Lin
%A Guifen Ke
%A Hongxin Zhang
%A Bing Wang
%A Jian Huang
%A Zeguang Han
%A Lixin Ma
%A Keke Huo
%A Xiaoming Yang
%A Pengyuan Yang
%A Fuchu He
%A Tao Tao
%T Subunit-subunit interactions in the human 26S proteasome
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 508-520
%V 8
%N 3
%U http://dx.doi.org/10.1002/pmic.200700588

%A Astle J
%A Ferguson JT
%A German JB
%A Harrigan GG
%A Kelleher NL
%A Kodadek T
%A Parks BA
%A Roth MJ
%A Singletary KW
%A Wenger CD
%A Mahady GB
%T Characterization of Proteomic and Metabolomic Responses to Dietary Factors and Supplements
%0 Journal Article
%D 2007
%J J Nutr
%P 2787-2793
%V 137
%N 12
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18029500&dopt=Abstract

%A Robinson JM
%A Ackerman WE 4th
%A Kniss DA
%A Takizawa T
%A Vandré DD
%T Proteomics of the Human Placenta: Promises and Realities
%0 Journal Article
%D 2008
%J Placenta
%P 135-43
%V 29
%N 2
%U http://dx.doi.org/10.1016/j.placenta.2007.12.005

%A Goeman JJ
%T Autocorrelated logistic ridge regression for prediction based on proteomics spectra
%0 Journal Article
%D 
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%A Jones P
%A Cote RG
%A Cho SY
%A Klie S
%A Martens L
%A Quinn AF
%A Thorneycroft D
%A Hermjakob H
%T PRIDE: new developments and new datasets
%0 Journal Article
%D 2008
%J Nucl Acids Res
%P D878-83
%V 36
%N Database issue
%U http://dx.doi.org/10.1093/nar/gkm1021

%A Meuleman W
%A Engwegen JY
%A Gast MC
%A Beijnen JH
%A Reinders MJ
%A Wessels LF
%T Comparison of normalisation methods for surface-enhanced laser desorption and ionisation (SELDI) time-of-flight (TOF) mass spectrometry data
%0 Journal Article
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%A Laura Giusti
%A Chiara Baldini
%A Laura Bazzichi
%A Stefano Bombardieri
%A Antonio Lucacchini
%T Proteomic diagnosis of Sjögren's syndrome
%0 Journal Article
%D 2007
%J Expert Review of Proteomics
%P 757-767
%V 4
%N 6
%U http://dx.doi/10.1586/14789450.4.6.757

%A Rollín R
%A Marco F
%A Camafeita E
%A Calvo E
%A López-Durán L
%A Jover JA
%A López JA
%A Fernández-Gutiérrez B
%T Differential proteome of bone marrow mesenchymal stem cells from osteoarthritis patients
%0 Journal Article
%D 2008
%J Osteoarthritis Cartilage
%P -
%V 
%N 
%U http://dx.doi.org/10.1016/j.joca.2007.12.006
%8 Jan 25, 2008

%A Hoefsloot HC
%A Smit S
%A Smilde AK
%T A classification model for the leiden proteomics competition
%0 Journal Article
%D 
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%U http://www.bepress.com/sagmb/vol7/iss2/art8

%A Francois P
%A Scherl A
%A Hochstrasser D
%A Schrenzel J
%T Proteomic approach to investigate MRSA
%0 Journal Article
%D 2007
%J Methods Mol Biol
%P 179-200
%V 391
%N 
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18025678&dopt=Abstract

%A Metodi Metodiev
%A Louise Alldridge
%T Phosphoproteomics: A possible route to novel biomarkers of breast cancer
%0 Journal Article
%D 2008
%J PROTEOMICS - CLINICAL APPLICATIONS
%P 181-194
%V 2
%N 2
%U http://dx.doi.org/10.1002/prca.200780011

%A Chi Nam Ignatius Pang
%A James Robert Krycer
%A Angela Lek
%A Marc Ronald Wilkins
%T Are protein complexes made of cores, modules and attachments?
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 425-434
%V 8
%N 3
%U http://dx.doi.org/10.1002/pmic.200700801

%A Sidse Ornbjerg Wurtz
%A Susanne Moller
%A Henning Mouridsen
%A Pernille Briaemer Hertel
%A Esbern Friis
%A Nils Brunner
%T Plasma and Serum Levels of Tissue Inhibitor of Metalloproteinases-1 Are Associated with Prognosis in Node-negative Breast Cancer: A Prospective Study
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 424-430
%V 7
%N 2
%U http://www.mcponline.org/cgi/content/abstract/7/2/424?etoc

%A Hamsten C
%A Westberg J
%A Bölske G
%A Ayling R
%A Uhlén M
%A Persson A
%T Expression and immunogenicity of six putative variable surface proteins in Mycoplasma mycoides subsp. mycoides SC
%0 Journal Article
%D 2008
%J Microbiology
%P 539-49
%V 154
%N Pt 2
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18227258&dopt=Abstract

%A Tran JC
%A Doucette AA
%T Gel-Eluted Liquid Fraction Entrapment Electrophoresis: An Electrophoretic Method for Broad Molecular Weight Range Proteome Separation
%0 Journal Article
%D 2008
%J Anal Chem
%P 1568-73
%V 80
%N 5
%U http://dx.doi.org/10.1021/ac702197w

%A Hunsucker SW
%A Solomon B
%A Gawryluk J
%A Geiger JD
%A Vacano GN
%A Duncan MW
%A Patterson D
%T Assessment of Post-Mortem-Induced Changes to the Mouse Brain Proteome
%0 Journal Article
%D 2007
%J J Neurochem
%P -
%V 
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%U http://dx.doi.org/10.1111/j.1471-4159.2007.05183.x
%8 Dec 12, 2007

%A Thongboonkerd V
%T Proteomics in leptospirosis research: towards molecular diagnostics and vaccine development
%0 Journal Article
%D 2008
%J Expert Rev Mol Diagn
%P 53-61
%V 8
%N 1
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18088230&dopt=Abstract

%A Elias DA
%A Tollaksen SL
%A Kennedy DW
%A Mottaz HM
%A Giometti CS
%A McLean JS
%A Hill EA
%A Pinchuk GE
%A Lipton MS
%A Fredrickson JK
%A Gorby YA
%T The influence of cultivation methods on Shewanella oneidensis physiology and proteome expression
%0 Journal Article
%D 2007
%J Arch Microbiol
%P -
%V 
%N 
%U http://dx.doi.org/10.1007/s00203-007-0321-y
%8 Nov 21, 2007

%A Kelsen SG
%A Duan X
%A Ji R
%A Perez O
%A Liu C
%A Merali S
%T Cigarette Smoke Induces an Unfolded Protein Response in the Human Lung: A Proteomic Approach
%0 Journal Article
%D 2007
%J Am J Respir Cell Mol Biol
%P -
%V 
%N 
%U http://dx.doi.org/10.1165/rcmb.2007-0221OC
%8 Dec 13, 2007

%A Xiao-Li Wang
%A Alex Fu
%A Craig Spiro
%A Hon-Chi Lee
%T Clinical application of proteomics approaches in vascular diseases
%0 Journal Article
%D 2008
%J PROTEOMICS - CLINICAL APPLICATIONS
%P 238-250
%V 2
%N 2
%U http://dx.doi.org/10.1002/prca.200780005

%A Antoine H. P. America
%A Jan H. G. Cordewener
%T Comparative LC-MS: A landscape of peaks and valleys
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 731-749
%V 8
%N 4
%U http://dx.doi.org/10.1002/pmic.200700694

%A Juan Madoz-Gurpide
%A Rork Kuick
%A Hong Wang
%A David E. Misek
%A Sam M. Hanash
%T Integral Protein Microarrays for the Identification of Lung Cancer Antigens in Sera That Induce a Humoral Immune Response
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 268-281
%V 7
%N 2
%U http://www.mcponline.org/cgi/content/abstract/7/2/268?etoc

%A Rachinsky A
%A Guerrero FD
%A Scoles GA
%T Proteomic profiling of Rhipicephalus (Boophilus) microplus midgut responses to infection with Babesia bovis
%0 Journal Article
%D 2007
%J Vet Parasitol
%P -
%V 
%N 
%U http://dx.doi.org/10.1016/j.vetpar.2007.12.027
%8 Dec 27, 2007

%A Xin-Yu Liu
%A Jin-Liang Yang
%A Li-Juan Chen
%A Ying Zhang
%A Ming-Li Yang
%A Yong-Yang Wu
%A Fu-Qiang Li
%A Ming-Hai Tang
%A Shu-Fang Liang
%A Yu-Quan Wei
%T Comparative proteomics and correlated signaling network of rat hippocampus in the pilocarpine model of temporal lobe epilepsy
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 582-603
%V 8
%N 3
%U http://dx.doi.org/10.1002/pmic.200700514

%A Philippe Kischel
%A David Waltregny
%A Vincent Castronovo
%T Identification of accessible human cancer biomarkers using ex vivo chemical proteomic strategies
%0 Journal Article
%D 2007
%J Expert Review of Proteomics
%P 727-739
%V 4
%N 6
%U http://dx.doi.org/10.1586/14789450.4.6.727

%A Butt
%A Yoki K.w.o.k-C.h.u.; Lo
%A Samuel C.h.u.n-L.a.p
%T Proteomic Studies on Plant-Pathogen Interaction in Compatible and Incompatible Systems
%0 Journal Article
%D 2007
%J Current Proteomics
%P 141-156
%V 4
%N 3
%U http://www.ingentaconnect.com/content/ben/cp/2007/00000004/00000003/art00003

%A Elisabeth Jamet
%A Cécile Albenne
%A Georges Boudart
%A Muhammad Irshad
%A Hervé Canut
%A Rafael Pont-Lezica
%T Recent advances in plant cell wall proteomics
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 893-908
%V 8
%N 4
%U http://dx.doi.org/10.1002/pmic.200700938

%A Sarah Robinson
%A Richard K. Niles
%A H. Ewa Witkowska
%A Kirsten J. Rittenbach
%A Robert J. Nichols
%A Jonathan A. Sargent
%A Scott E. Dixon
%A Akraporn Prakobphol
%A Steven C. Hall
%A Susan J. Fisher
%A Markus Hardt
%T A mass spectrometry-based strategy for detecting and characterizing endogenous proteinase activities in complex biological samples
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 435-445
%V 8
%N 3
%U http://dx.doi.org/10.1002/pmic.200700680

%A Jones J
%A Otu HH
%A Grall F
%A Spentzos D
%A Can H
%A Aivado M
%A Belldegrun AS
%A Pantuck AJ
%A Libermann TA
%T Proteomic Identification of Interleukin-2 Therapy Response in Metastatic Renal Cell Cancer
%0 Journal Article
%D 2008
%J J Urol
%P 730-6
%V 179
%N 2
%U http://dx.doi.org/10.1016/j.juro.2007.09.016

%A Maria Jansson
%A Kristofer Wårell
%A Fredrik Levander
%A Peter James
%T Membrane Protein Identification: N-Terminal Labeling of Nontryptic Membrane Protein Peptides Facilitates Database Searching
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 659-665
%V 7
%N 02
%U http://dx.doi.org/10.1021/pr070545t

%A Jin Young Kim
%A Ho-Jun Song
%A Hoi-Jeong Lim
%A Myung-Geun Shin
%A Jae Seong Kim
%A Hyeoung-Joon Kim
%A Baik Yoon Kim
%A Seung-won Lee
%T Platelet Factor-4 Is an Indicator of Blood Count Recovery in Acute Myeloid Leukemia Patients in Complete Remission
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 431-441
%V 7
%N 2
%U http://www.mcponline.org/cgi/content/abstract/7/2/431?etoc

%A Jose L. Luque-Garcia
%A Ge Zhou
%A Daniel S. Spellman
%A Tung-Tien Sun
%A Thomas A. Neubert
%T Analysis of Electroblotted Proteins by Mass Spectrometry: Protein Identification after Western Blotting
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 308-314
%V 7
%N 2
%U http://www.mcponline.org/cgi/content/abstract/7/2/308?etoc

%A Mones Abu-Asab
%A Mohamed Chaouchi
%A Hakima Amri
%T Evolutionary medicine: A meaningful connection between omics, disease, and treatment
%0 Journal Article
%D 2008
%J PROTEOMICS - CLINICAL APPLICATIONS
%P 122-134
%V 2
%N 2
%U http://dx.doi.org/10.1002/prca.200780047

%A O'Connor R
%A Clynes M
%A Dowling P
%A O'Donovan N
%A O'Driscoll L
%T Drug resistance in cancer - searching for mechanisms, markers and therapeutic agents
%0 Journal Article
%D 2007
%J Expert Opin Drug Metab Toxicol
%P 805-17
%V 3
%N 6
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18028026&dopt=Abstract

%A Sosinska GJ
%A de Groot PW
%A Teixeira de Mattos MJ
%A Dekker HL
%A de Koster CG
%A Hellingwerf KJ
%A Klis FM
%T Hypoxic conditions and iron restriction affect the cell-wall proteome of Candida albicans grown under vagina-simulative conditions
%0 Journal Article
%D 2008
%J Microbiology
%P 510-20
%V 154
%N Pt 2
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18227255&dopt=Abstract

%A Bararia D
%A Trivedi AK
%A Zada AA
%A Greif PA
%A Mulaw MA
%A Christopeit M
%A Hiddemann W
%A Bohlander SK
%A Behre G
%T Proteomic identification of the MYST domain histone acetyltransferase TIP60 (HTATIP) as a co-activator of the myeloid transcription factor C/EBPalpha
%0 Journal Article
%D 2008
%J Leukemia
%P -
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%N 
%U http://dx.doi.org/10.1038/sj.leu.2405101
%8 Jan 31, 2008

%A Martijn W. H. Pinkse
%A Shabaz Mohammed
%A Joost W. Gouw
%A Bas van Breukelen
%A Harmjan R. Vos
%A Albert J. R. Heck
%T Highly Robust, Automated, and Sensitive Online TiO2-Based Phosphoproteomics Applied To Study Endogenous Phosphorylation in Drosophila melanogaster
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 687-697
%V 7
%N 02
%U http://dx.doi.org/10.1021/pr700605z

%A Xu NY
%A Zhang SP
%A Nie JH
%A Li JX
%A Tong J
%T Radon-induced proteomic profile of lung tissue in rats
%0 Journal Article
%D 2008
%J J Toxicol Environ Health A
%P 361-6
%V 71
%N 6
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18246495&dopt=Abstract

%A Simone König
%T Target coatings and desorption surfaces in biomolecular MALDI-MS
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 706-714
%V 8
%N 4
%U http://dx.doi.org/10.1002/pmic.200700782

%A Van Laar VS
%A Dukes AA
%A Cascio M
%A Hastings TG
%T Proteomic analysis of rat brain mitochondria following exposure to dopamine quinone: Implications for Parkinson disease
%0 Journal Article
%D 2008
%J Neurobiol Dis
%P 477-89
%V 29
%N 3
%U http://dx.doi.org/10.1016/j.nbd.2007.11.007

%A Mahuya Bose
%A Brian P. Adams
%A Randy M. Whittal
%A Himangshu S. Bose
%T Identification of unknown protein complex members by radiolocalization and analysis of low-abundance complexes resolved using native polyacrylamide gel electrophoresis
%0 Journal Article
%D 2008
%J ELECTROPHORESIS
%P 753-760
%V 29
%N 4
%U http://dx.doi.org/10.1002/elps.200700782

%A Charlotte Hagman
%A Darrell Ricke
%A Stefan Ewert
%A Stephan Bek
%A Rocco Falchetto
%A Francis Bitsch
%T Absolute Quantification of Monoclonal Antibodies in Biofluids by Liquid Chromatography-Tandem Mass Spectrometry
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 1290-1296
%V 80
%N 4
%U http://dx.doi.org/10.1021/ac702115b

%A Qiuxia Dai
%A G. Patricia Escobar
%A Kevin W. Hakala
%A Jessica M. Lambert
%A Susan T. Weintraub
%A Merry L. Lindsey
%T The Left Ventricle Proteome Differentiates Middle-Aged and Old Left Ventricles in Mice
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 756-765
%V 7
%N 02
%U http://dx.doi.org/10.1021/pr700685e

%A Lopez
%A Jose L.; Bermudez-Crespo
%A Jose
%T Possibilities of Two-Dimensional Gel Electrophoresis in the Understanding of Human Disease
%0 Journal Article
%D 2007
%J Current Proteomics
%P 187-197
%V 4
%N 4
%U http://www.ingentaconnect.com/content/ben/cp/2007/00000004/00000004/art00001

%A Kouhei Nagai
%A Norishige Yotsukura
%A Haruka Ikegami
%A Hajime Kimura
%A Koichi Morimoto
%T Protein extraction for 2-DE from the lamina of Ecklonia kurome (laminariales): Recalcitrant tissue containing high levels of viscous polysaccharides
%0 Journal Article
%D 2008
%J ELECTROPHORESIS
%P 672-681
%V 29
%N 3
%U http://dx.doi.org/10.1002/elps.200700461

%A Roux MM
%A Radeke MJ
%A Goel M
%A Mushegian A
%A Foltz KR
%T 2DE identification of proteins exhibiting turnover and phosphorylation dynamics during sea urchin egg activation
%0 Journal Article
%D 2008
%J Dev Biol
%P 630-47
%V 313
%N 2
%U http://dx.doi.org/10.1016/j.ydbio.2007.10.053

%A Alexander Scherl
%A Scott A. Shaffer
%A Gregory K. Taylor
%A Hemantha D. Kulasekara
%A Samuel I. Miller
%A David R. Goodlett
%T Genome-Specific Gas-Phase Fractionation Strategy for Improved Shotgun Proteomic Profiling of Proteotypic Peptides
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 1182-1191
%V 80
%N 4
%U http://dx.doi.org/10.1021/ac701680f

%A Stefano Barelli
%A Giorgia Canellini
%A Lynne Thadikkaran
%A David Crettaz
%A Manfredo Quadroni
%A Joël S. Rossier
%A Jean-Daniel Tissot
%A Niels Lion
%T Oxidation of proteins: Basic principles and perspectives for blood proteomics
%0 Journal Article
%D 2008
%J PROTEOMICS - CLINICAL APPLICATIONS
%P 142-157
%V 2
%N 2
%U http://dx.doi.org/10.1002/prca.200780009

%A Manfred Koegl and Peter Uetz
%T Improving yeast two-hybrid screening systems
%0 Journal Article
%D 2007
%J Brief Funct Genomic Proteomic
%P 302-312
%V 6
%N 4
%U http://bfgp.oxfordjournals.org/cgi/content/abstract/6/4/302?etoc

%A Yoo JS
%A Seong WK
%A Kim TS
%A Park YK
%A Oh HB
%A Yoo CK
%T Comparative Proteome Analysis of the Outer Membrane Proteins of in Vitro-Induced Multi-Drug Resistant Neisseria gonorrhoeae
%0 Journal Article
%D 2007
%J Microbiol Immunol
%P 1171-7
%V 51
%N 12
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18094535&dopt=Abstract

%A Magnus Palmblad
%A Davinia J. Mills
%A Laurence V. Bindschedler
%T Heat-Shock Response in Arabidopsis thaliana Explored by Multiplexed Quantitative Proteomics Using Differential Metabolic Labeling
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 780-785
%V 7
%N 02
%U http://dx.doi.org/10.1021/pr0705340

%A Hesse AM
%A Marcelo P
%A Rossier J
%A Vinh J
%T Simple and universal tool to remove on-line impurities in mono- or two-dimensional liquid chromatography-mass spectrometry analysis
%0 Journal Article
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%J J Chromatogr A
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%8 Jan 4, 2008

%A Marc A. Reymond
%T Proteomics of Human Bodyfluids: Principles, Methods, and Applications. By Visith Thongboonkerd (Ed.)
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%A Xu C
%A Wang Z
%T Comparative proteomic analysis of livers from ketotic cows
%0 Journal Article
%D 2008
%J Vet Res Commun
%P 263-273
%V 32
%N 3
%U http://dx.doi.org/10.1007/s11259-007-9028-4

%A Thierry Meinnel
%A Carmela Giglione
%T Tools for analyzing and predicting N-terminal protein modifications
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 626-649
%V 8
%N 4
%U http://dx.doi.org/10.1002/pmic.200700592

%A Li X
%A Cao J
%A Jin Q
%A Xie C
%A He Q
%A Cao R
%A Xiong J
%A Chen P
%A Wang X
%A Liang S
%T A proteomic study reveals the diversified distribution of plasma membrane-associated proteins in rat hepatocytes
%0 Journal Article
%D 2008
%J J Cell Biochem
%P -
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%N 
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%8 Feb 4, 2008

%A Siciliano RA
%A Cacace G
%A Mazzeo MF
%A Morelli L
%A Elli M
%A Rossi M
%A Malorni A
%T Proteomic investigation of the aggregation phenomenon in Lactobacillus crispatus
%0 Journal Article
%D 2008
%J Biochim Biophys Acta
%P 335-42
%V 1784
%N 2
%U http://dx.doi.org/10.1016/j.bbapap.2007.11.007

%A van der Werff MP
%A Mertens B
%A de Noo ME
%A Bladergroen MR
%A Dalebout HC
%A Tollenaar RA
%A Deelder AM
%T Case-control breast cancer study of MALDI-TOF proteomic mass spectrometry data on serum samples
%0 Journal Article
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%A Godde JS
%A Ura K
%T Cracking the Enigmatic Linker Histone Code
%0 Journal Article
%D 2008
%J J Biochem
%P 287-93
%V 143
%N 3
%U http://dx.doi.org/10.1093/jb/mvn013

%A Karine Jacob
%A Caroline Sollier
%A Nada Jabado
%T Circulating tumor cells: detection, molecular profiling and future prospects
%0 Journal Article
%D 2007
%J Expert Review of Proteomics
%P 741-756
%V 4
%N 6
%U http://dx.doi.org/10.1586/14789450.4.6.741

%A Chen P
%A Zhang L
%A Li X
%A Wang X
%A Cao R
%A Liu Z
%A Xiong J
%A Peng X
%A Wei Y
%A Ying X
%A Wang X
%A Liang S
%T Evaluation of strategy for analyzing mouse liver plasma membrane proteome
%0 Journal Article
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%J Sci China C Life Sci
%P 731-8
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%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18026860&dopt=Abstract

%A Sardiu ME
%A Cai Y
%A Jin J
%A Swanson SK
%A Conaway RC
%A Conaway JW
%A Florens L
%A Washburn MP
%T Probabilistic assembly of human protein interaction networks from label-free quantitative proteomics
%0 Journal Article
%D 2008
%J Proc Natl Acad Sci U S A
%P 1454-9
%V 105
%N 5
%U http://dx.doi.org/10.1073/pnas.0706983105

%A Melissa R. Thompson
%A Dorothea K. Thompson
%A Robert L. Hettich
%T Systematic Assessment of the Benefits and Caveats in Mining Microbial Post-Translational Modifications from Shotgun Proteomic Data: The Response of Shewanella oneidensis to Chromate Exposure
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 648-658
%V 7
%N 02
%U http://dx.doi.org/10.1021/pr070531n

%A Roberto Scatena
%A Patrizia Bottoni
%A Bruno Giardina
%T Modulation of cancer cell line differentiation: A neglected proteomic analysis with potential implications in pathophysiology, diagnosis, prognosis, and therapy of cancer
%0 Journal Article
%D 2008
%J PROTEOMICS - CLINICAL APPLICATIONS
%P 229-237
%V 2
%N 2
%U http://dx.doi.org/10.1002/prca.200780014

%A René P. Zahedi
%A Urs Lewandrowski
%A Julia Wiesner
%A Stefanie Wortelkamp
%A Jan Moebius
%A Claudia Schütz
%A Ulrich Walter
%A Stepan Gambaryan
%A Albert Sickmann
%T Phosphoproteome of Resting Human Platelets
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 526-534
%V 7
%N 02
%U http://dx.doi.org/10.1021/pr0704130

%A Marc J. Canova
%A Romain Veyron-Churlet
%A Isabelle Zanella-Cleon
%A Martin Cohen-Gonsaud
%A Alain J. Cozzone
%A Michel Becchi
%A Laurent Kremer
%A Virginie Molle
%T The Mycobacterium tuberculosis serine/threonine kinase PknL phosphorylates Rv2175c: Mass spectrometric profiling of the activation loop phosphorylation sites and their role in the recruitment of Rv2175c
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 521-533
%V 8
%N 3
%U http://dx.doi.org/10.1002/pmic.200700442

%A Gary L. Nelsestuen
%A Stephen B. Harvey
%A Yan Zhang
%A Raj S. Kasthuri
%A Alan R. Sinaiko
%A E. Wesley Ely
%A Gordon R. Bernard
%A Monika Homoncik
%A Bernd Jilma
%T Top-down proteomic analysis by MALDI-TOF profiling: Concentration-independent biomarkers
%0 Journal Article
%D 2008
%J PROTEOMICS - CLINICAL APPLICATIONS
%P 158-166
%V 2
%N 2
%U http://dx.doi.org/10.1002/prca.200780107

%A Vertommen D
%A Van Roy J
%A Szikora JP
%A Rider MH
%A Michels PA
%A Opperdoes FR
%T Differential expression of glycosomal and mitochondrial proteins in the two major life-cycle stages of Trypanosoma brucei
%0 Journal Article
%D 2008
%J Mol Biochem Parasitol
%P 189-201
%V 158
%N 2
%U http://dx.doi.org/10.1016/j.molbiopara.2007.12.008

%A Ghosh JC
%A Dohi T
%A Kang BH
%A Altieri DC
%T Hsp60 regulation of tumor cell apoptosis
%0 Journal Article
%D 2008
%J J Biol Chem
%P 5188-94
%V 283
%N 8
%U http://dx.doi.org/10.1074/jbc.M705904200

%A Trong Khoa Pham and Phillip C. Wright
%T Proteomic Analysis of Calcium Alginate-Immobilized Saccharomyces cerevisiae under High-Gravity Fermentation Conditions
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 515-525
%V 7
%N 02
%U http://dx.doi.org/10.1021/pr070391h

%A Bocker S
%A Makinen V
%T Combinatorial approaches for mass spectra recalibration
%0 Journal Article
%D 2008
%J IEEE/ACM Trans Comput Biol Bioinform
%P 91-100
%V 5
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%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18245878&dopt=Abstract

%A Amanda M. Palumbo
%A Jetze J. Tepe
%A Gavin E. Reid
%T Mechanistic Insights into the Multistage Gas-Phase Fragmentation Behavior of Phosphoserine- and Phosphothreonine-Containing Peptides
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 771-779
%V 7
%N 02
%U http://dx.doi.org/10.1021/pr0705136

%A Lan Li
%A Su-hong Chen
%A Chao-hui Yu
%A You-ming Li
%A Sheng-qi Wang
%T Identification of Hepatocellular-Carcinoma-Associated Antigens and Autoantibodies by Serological Proteome Analysis Combined with Protein Microarray
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 611-620
%V 7
%N 02
%U http://dx.doi.org/10.1021/pr070525r

%A Wei Yang
%A Hanno Steen
%A Michael R. Freeman
%T Proteomic approaches to the analysis of multiprotein signaling complexes
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 832-851
%V 8
%N 4
%U http://dx.doi.org/10.1002/pmic.200700650

%A Sprenger J
%A Lynn Fink J
%A Karunaratne S
%A Hanson K
%A Hamilton NA
%A Teasdale RD
%T LOCATE: a mammalian protein subcellular localization database
%0 Journal Article
%D 2008
%J Nucl Acids Res
%P D230-3
%V 36
%N Database issue
%U http://dx.doi.org/10.1093/nar/gkm950

%A Morsczeck C
%A Prokohova T
%A Sigh J
%A Pfeiffer M
%A Bille-Nielsen M
%A Petersen J
%A Boysen A
%A Kofoed T
%A Frimodt-Møller N
%A Nyborg-Nielsen P
%A Schrotz-King P
%T Streptococcus pneumoniae: proteomics of surface proteins for vaccine development
%0 Journal Article
%D 2008
%J Clin Microbiol Infect
%P 74-81
%V 14
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%U http://dx.doi.org/10.1111/j.1469-0691.2007.01878.x

%A Niwa T
%T Biomarker discovery for kidney diseases by mass spectrometry
%0 Journal Article
%D 2007
%J J Chromatogr B Analyt Technol Biomed Life Sci
%P -
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%N 
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%8 Nov 1, 2007

%A Elisa Greggio
%A Andrew Singleton
%T Kinase signaling pathways as potential targets in the treatment of Parkinson's disease
%0 Journal Article
%D 2007
%J Expert Review of Proteomics
%P 783-792
%V 4
%N 6
%U http://dx.doi.org/10.1586/14789450.4.6.783

%A Yamileth Angulo
%A José Escolano
%A Bruno Lomonte
%A José María Gutiérrez
%A Libia Sanz
%A Juan J. Calvete
%T Snake Venomics of Central American Pitvipers: Clues for Rationalizing the Distinct Envenomation Profiles of Atropoides nummifer and Atropoides picadoi
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 708-719
%V 7
%N 02
%U http://dx.doi.org/10.1021/pr700610z

%A Thitiwan Srinark
%A Chandra Kambhamettu
%T An image analysis suite for spot detection and spot matching in two-dimensional electrophoresis gels
%0 Journal Article
%D 2008
%J ELECTROPHORESIS
%P 706-715
%V 29
%N 3
%U http://dx.doi.org/10.1002/elps.200700244

%A Kah-Leong Lim
%T Ubiquitin-proteasome system dysfunction in Parkinson's disease: current evidence and controversies
%0 Journal Article
%D 2007
%J Expert Review of Proteomics
%P 769-781
%V 4
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%U http://dx.doi.org/10.1586/14789450.4.6.769

%A Stevens AL
%A Wishnok JS
%A Chai DH
%A Grodzinsky AJ
%A Tannenbaum SR
%T A sodium dodecyl sulfate-polyacrylamide gel electrophoresis-liquid chromatography tandem mass spectrometry analysis of bovine cartilage tissue response to mechanical compression injury and the inflammatory cytokines tumor necrosis factor alpha and interle
%0 Journal Article
%D 2008
%J Arthritis Rheum
%P 489-500
%V 58
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%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18240213&dopt=Abstract

%A Shi M
%A Jin J
%A Wang Y
%A Beyer RP
%A Kitsou E
%A Albin RL
%A Gearing M
%A Pan C
%A Zhang J
%T Mortalin: A Protein Associated With Progression of Parkinson Disease?
%0 Journal Article
%D 2008
%J J Neuropathol Exp Neurol
%P -
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%U http://dx.doi.org/10.1097/nen.0b013e318163354a
%8 Jan 18, 2008

%A Mee-Jung Han
%A Meenhard Herlyn
%A Aron B. Fisher
%A David W. Speicher
%T Microscale solution IEF combined with 2-D DIGE substantially enhances analysis depth of complex proteomes such as mammalian cell and tissue extracts
%0 Journal Article
%D 2008
%J ELECTROPHORESIS
%P 695-705
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%T PRAS40 and PRR5-Like Protein Are New mTOR Interactors that Regulate Apoptosis
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%T Serum Proteomics and Biomarkers in Hepatocellular Carcinoma and Chronic Liver Disease
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%A Richard Wilson
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%T Cartilage proteomics: Challenges, solutions and recent advances
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%A Casey J. Krusemark
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%T Global Amine and Acid Functional Group Modification of Proteins
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%A Hye Kyong Kweon and Kristina Håkansson
%T Metal Oxide-Based Enrichment Combined with Gas-Phase Ion-Electron Reactions for Improved Mass Spectrometric Characterization of Protein Phosphorylation
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%A Boris Macek
%A Florian Gnad
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%A Chanchal Kumar
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%A Ivan Mijakovic
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%T Phosphoproteome Analysis of E. coli Reveals Evolutionary Conservation of Bacterial Ser/Thr/Tyr Phosphorylation
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%A Yie Hou Lee
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%T Proteomics profiling of hepatic mitochondria in heterozygous Sod2+/- mice, an animal model of discreet mitochondrial oxidative stress
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%A Santamaría E
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%T Proteomic analysis of liver diseases: molecular mechanisms and biomarker discovery
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%A Stephen Swatkoski
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%T Evaluation of Microwave-Accelerated Residue-Specific Acid Cleavage for Proteomic Applications
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%T Bronchoalveolar lavage fluid proteome in bronchiolitis obliterans syndrome: possible role for surfactant protein a in disease onset
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%A Tian Z
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%T MicroRNA-target pairs in the rat kidney identified by microRNA microarray, proteomic, and bioinformatic analysis
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%A Bryan G. Fry
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%T Evolution of an Arsenal: Structural and Functional Diversification of the Venom System in the Advanced Snakes (Caenophidia)
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%T Proteomic analysis of mouse islets after multiple low-dose streptozotocin injection
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%T Combined metabolomic and proteomic analysis of human atrial fibrillation
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%A Luchini A
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%A Espina V
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%A Zhou W
%A Ross MM
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%T Smart Hydrogel Particles: Biomarker Harvesting: One-Step Affinity Purification, Size Exclusion, and Protection against Degradation
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%A Dinesh D. Sriramulu
%T Adaptive expression of foreign genes in the clonal variants of bacteria: From proteomics to clinical application
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%J PROTEOMICS
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%U http://dx.doi.org/10.1002/pmic.200700811

%A Rawson PM
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%T Cross-presentation of caspase-cleaved apoptotic self antigens in HIV infection
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%T Potential of urinary biomarkers in early bladder cancer diagnosis
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%J Expert Rev Anticancer Ther
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%A Kurt Hojlund
%A Zhengping Yi
%A Hyonson Hwang
%A Benjamin Bowen
%A Natalie Lefort
%A Charles R. Flynn
%A Paul Langlais
%A Susan T. Weintraub
%A Lawrence J. Mandarino
%T Characterization of the Human Skeletal Muscle Proteome by One-dimensional Gel Electrophoresis and HPLC-ESI-MS/MS
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%J Mol Cell Proteomics
%P 257-267
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%A Pia Schmidt
%A Janet Walker
%A Laura Selway
%A David Stead
%A Zhikang Yin
%A Brice Enjalbert
%A Michael Weig
%A Alistair J. P. Brown
%T Proteomic analysis of the pH response in the fungal pathogen Candida glabrata
%0 Journal Article
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%J PROTEOMICS
%P 534-544
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%U http://dx.doi.org/10.1002/pmic.200700845

%A Giovanni Candiano
%A Laura Santucci
%A Andrea Petretto
%A Barbara Pavone
%A Piero Del Boccio
%A Luca Musante
%A Maurizio Bruschi
%A Giorgio Federici
%A Rosanna Gusmano
%A Andrea Urbani
%A Gian M. Ghiggeri
%T High-resolution 2-DE for resolving proteins, protein adducts and complexes in plasma
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%J ELECTROPHORESIS
%P 682-694
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%U http://dx.doi.org/10.1002/elps.200700537

%A Xiaogang Jiang
%A Mingliang Ye
%A Hanfa Zou
%T Technologies and methods for sample pretreatment in efficient proteome and peptidome analysis
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%J PROTEOMICS
%P 686-705
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%U http://dx.doi.org/10.1002/pmic.200700617

%A Zhou HY
%T Proteomic analysis of hydroxyapatite interaction proteins in bone
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%J Ann N Y Acad Sci
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%A Caldwell RL
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%T Tissue profiling MALDI mass spectrometry reveals prominent calcium-binding proteins in the proteome of regenerative MRL mouse wounds
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%A Vardabasso C
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%T The histone chaperone protein Nucleosome Assembly Protein-1 (hNAP-1) binds HIV-1 Tat and promotes viral transcription
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%A Jun-ichi Furukawa
%A Yasuro Shinohara
%A Hiromitsu Kuramoto
%A Yoshiaki Miura
%A Hideyuki Shimaoka
%A Masaki Kurogochi
%A Mika Nakano
%A Shin-Ichiro Nishimura
%T Comprehensive Approach to Structural and Functional Glycomics Based on Chemoselective Glycoblotting and Sequential Tag Conversion
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%U http://dx.doi.org/10.1021/ac702124d

%A de la Cadena
%A Maria P.; Rodriguez-Pineiro
%A Ana M.; Alvarez-Chaver
%A Paula; Martinez-Zorzano
%A Vicenta S.; Rodriguez-Berrocal
%A Francisco J
%T Relevance of Protein Isoforms in Proteomic Studies
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%J Current Proteomics
%P 235-252
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%A Jon M. Jacobs
%A Katrina M. Waters
%A Loel E. Kathmann
%A David G. Camp
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%A Richard D. Smith
%A Brian D. Thrall
%T The Mammary Epithelial Cell Secretome and Its Regulation by Signal Transduction Pathways
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%J JOURNAL OF PROTEOME RESEARCH
%P 558-569
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%U http://dx.doi.org/10.1021/pr0704377

%A Harold Tjalsma
%A Renée M. J. Schaeps
%A Dorine W. Swinkels
%T Immunoproteomics: From biomarker discovery to diagnostic applications
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%J PROTEOMICS - CLINICAL APPLICATIONS
%P 167-180
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%U http://dx.doi.org/10.1002/prca.200780012

%A Buza TJ
%A McCarthy FM
%A Burgess SC
%T Experimental-confirmation and functional-annotation of predicted proteins in the chicken genome
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%A Higdon R
%A Hogan JM
%A Kolker N
%A van Belle G
%A Kolker E
%T Experiment-specific estimation of Peptide identification probabilities using a randomized database
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%J OMICS
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%A Marengo E
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%A Righetti SC
%A Cecconi D
%A Righetti PG
%T Application of partial least squares discriminant analysis and variable selection procedures: a 2D-PAGE proteomic study
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%T A proteomic study shows differential regulation of stress, redox regulation and peroxidase proteins by iron supply and the transcription factor FER
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%A Dhaval Nanavati
%A Marjan Gucek
%A Jacqueline L. S. Milne
%A Sriram Subramaniam
%A Sanford P. Markey
%T Stoichiometry and Absolute Quantification of Proteins with Mass Spectrometry Using Fluorescent and Isotope-labeled Concatenated Peptide Standards
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%J Mol Cell Proteomics
%P 442-447
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%U http://www.mcponline.org/cgi/content/abstract/7/2/442?etoc

%A Humberto González-Díaz
%A Yenny González-Díaz
%A Lourdes Santana
%A Florencio M. Ubeira
%A Eugenio Uriarte
%T Proteomics, networks and connectivity indices
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%J PROTEOMICS
%P 750-778
%V 8
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%U http://dx.doi.org/10.1002/pmic.200700638

%A Kosaku Shinoda
%A Masahiro Sugimoto
%A Masaru Tomita
%A Yasushi Ishihama
%T Informatics for peptide retention properties in proteomic LC-MS
%0 Journal Article
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%J PROTEOMICS
%P 787-798
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%U http://dx.doi.org/10.1002/pmic.200700692

%A Katie Wing-kei Lam
%A Samuel Chun-lap Lo
%T Discovery of diagnostic serum biomarkers of gastric cancer using proteomics
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%J PROTEOMICS - CLINICAL APPLICATIONS
%P 219-228
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%U http://dx.doi.org/10.1002/prca.200780015

%A Ido Ginodi
%A Tal Vider-Shalit
%A Lea Tsaban
%A Yoram Louzoun
%T Precise score for the prediction of peptides cleaved by the proteasome
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%J Bioinformatics
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%U http://bioinformatics.oxfordjournals.org/cgi/content/abstract/24/4/477?etoc

%A Sen-Yung Hsieh
%A Chiao-Li Tseng
%A Yun-Shien Lee
%A An-Jing Kuo
%A Chien-FengSun
%A Yen-Hsiu Lin
%A Jen-Kun Chen
%T Highly Efficient Classification and Identification of Human Pathogenic Bacteria by MALDI-TOF MS
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%J Mol Cell Proteomics
%P 448-456
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%U http://www.mcponline.org/cgi/content/abstract/7/2/448?etoc

%A Vila A
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%A Jacobs AT
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%T Identification of Protein Targets of 4-Hydroxynonenal Using Click Chemistry for ex Vivo Biotinylation of Azido and Alkynyl Derivatives
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%J Chem Res Toxicol
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%U http://dx.doi.org/10.1021/tx700347w

%A Goel
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%T Human Heart Failure: A Proteomics Perspective
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%P 174-181
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%A Kimura A
%A Sakurai T
%A Tanaka Y
%A Hozumi I
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%T Proteomic analysis of autoantibodies in neuropsychiatric systemic lupus erythematosus patient with white matter hyperintensities on brain MRI
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%A Babu A. Manjasetty
%A Andrew P. Turnbull
%A Santosh Panjikar
%A Konrad Büssow
%A Mark R. Chance
%T Automated technologies and novel techniques to accelerate protein crystallography for structural genomics
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%J PROTEOMICS
%P 612-625
%V 8
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%U http://dx.doi.org/10.1002/pmic.200700687

%A Mulder NJ
%A Kersey P
%A Pruess M
%A Apweiler R
%T In Silico Characterization of Proteins: UniProt, InterPro and Integr8
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%A Barboro P
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%A Spina B
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%A Repaci E
%A Carmignani G
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%T Differential proteomic analysis of nuclear matrix in muscle-invasive bladder cancer: Potential to improve diagnosis and prognosis
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%P 13-26
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%A Sebastian Bocker
%A Zsuzsanna Liptak
%A Marcel Martin
%A Anton Pervukhin
%A Henner Sudek
%T DECOMP--from interpreting Mass Spectrometry peaks to solving the Money Changing Problem
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%U http://bioinformatics.oxfordjournals.org/cgi/content/abstract/24/4/591?etoc

%A Steven W. Taylor
%A Chengzao Sun
%A Amy Hsieh
%A Nancy L. Andon
%A Soumitra S. Ghosh
%T A Sulfated, Phosphorylated 7 kDa Secreted Peptide Characterized by Direct Analysis of Cell Culture Media
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%P 795-802
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%U http://dx.doi.org/10.1021/pr7006686

%A Appella E
%A Anderson CW
%T New prospects for proteomics - electron-capture (ECD) and electron-transfer dissociation (ETD) fragmentation techniques and combined fractional diagonal chromatography (COFRADIC)
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%A Chi-Hung Lin
%A Chia-Wei Lin
%A Kay-Hooi Khoo
%T Proteomic identification of specific glycosyltransferases functionally implicated for the biosynthesis of a targeted glyco-epitope
%0 Journal Article
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%J PROTEOMICS
%P 475-483
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%U http://dx.doi.org/10.1002/pmic.200700710

%A Md. Atiar Rahman
%A Suresh G. Kumar
%A Sang Woo Kim
%A Hye Jin Hwang
%A Yu Mi Baek
%A Sung Hak Lee
%A Hee Sun Hwang
%A Yun Hee Shon
%A Kyung Soo Nam
%A Jong Won Yun
%T Proteomic analysis for inhibitory effect of chitosan oligosaccharides on 3T3-L1 adipocyte differentiation
%0 Journal Article
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%J PROTEOMICS
%P 569-581
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%U http://dx.doi.org/10.1002/pmic.200700888

%A Au JS
%A Cho WC
%A Yip TT
%A Law SC
%T Proteomic approach to biomarker discovery in cancer tissue from lung adenocarcinoma among nonsmoking Chinese women in Hong Kong
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%J Cancer Invest
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%A Shadidi M
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%T Mucosal vaccination with phage-displayed tumour antigens identified through proteomics-based strategy inhibits the growth and metastasis of 4T1 breast adenocarcinoma
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%A Gong W
%A Zhou D
%A Ren Y
%A Wang Y
%A Zuo Z
%A Shen Y
%A Xiao F
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%T PepCyber:P~PEP: a database of human protein protein interactions mediated by phosphoprotein-binding domains
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%J Nucl Acids Res
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%U http://dx.doi.org/10.1093/nar/gkm854

%A Ahsan N
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%T A comparative proteomic analysis of tomato leaves in response to waterlogging stress
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%J Physiol Plant
%P 555-70
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%T Mass spectrometry analysis of gliadins in celiac disease
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%A Takashi Nakazawa
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%T Terminal proteomics: N- and C-terminal analyses for high-fidelity identification of proteins using MS
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%A Trong Khoa Pham
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%T Proteomic analysis of Saccharomyces cerevisiae
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%T The potential of proteomics for providing new insights into environmental impacts on human health
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%A Delphine Pflieger
%A Martin A. Junger
%A Markus Muller
%A Oliver Rinner
%A Hookeun Lee
%A Peter M. Gehrig
%A Matthias Gstaiger
%A Ruedi Aebersold
%T Quantitative Proteomic Analysis of Protein Complexes: Concurrent Identification of Interactors and Their State of Phosphorylation
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%T Venomics: unravelling the complexity of animal venoms with mass spectrometry
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%A Yoshiaki Miura
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%A Hideyuki Shimaoka
%A Mitsuhiro Tada
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%A Michitaka Ozaki
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%T BlotGlycoABCTM, an Integrated Glycoblotting Technique for Rapid and Large Scale Clinical Glycomics
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%T Estradiol in vivo regulation of brain mitochondrial proteome
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%A Habtom W. Ressom
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%A Mohamed Abdel-Hamid
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%T Analysis of MALDI-TOF Mass Spectrometry Data for Discovery of Peptide and Glycan Biomarkers of Hepatocellular Carcinoma
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%T Intracellular complexes of the 2 subunit of the nicotinic acetylcholine receptor in brain identified by proteomics
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%A Franck Brouillard
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%T Contribution of proteomics to the study of the role of cytokeratins in disease and physiopathology
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%T Proteomic profiling identifies afamin as a potential biomarker for ovarian cancer
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%T Comprehensive proteomics analysis of autophagy-deficient mouse liver
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%A Quentin Kaas
%A Jan-C. Westermann
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%T ConoServer, a database for conopeptide sequences and structures
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%A Shuichi Shimma
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%A Takahiro Hayasaka
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%T Mass Imaging and Identification of Biomolecules with MALDI-QIT-TOF-Based System
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%A Julian Vasilescu
%A Jeffrey C. Smith
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%T Systematic determination of ion score cutoffs based on calculated false positive rates: application for identifying ubiquitinated proteins by tandem mass spectrometry
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%A Satoshi Nishizuka
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%A Brett Spurrier
%A Frank L. Washburn
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%T Quantitative Protein Network Monitoring in Response to DNA Damage
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%A Xiu-Wu Bian
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%A Yi-Sheng Chen
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%T Unique proteomic features induced by a potential antiglioma agent, Nordy (dl-nordihydroguaiaretic acid), in glioma cells
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%A Bonney GK
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%T Circulating markers of biliary malignancy: opportunities in proteomics?
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%T Reverse phase protein microarrays for monitoring biological responses
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%T Saliva analysis by surface-enhanced laser desorption/ionization time-of-flight mass spectrometry (SELDI-TOF/MS): from sample collection to data analysis
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%A Salisbury CM
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%T Optimization of Activity-Based Probes for Proteomic Profiling of Histone Deacetylase Complexes
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%A Saito K
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%T Proteomic identification of ZO-1/2 as a novel scaffold for Src/Csk regulatory circuit
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%T Proteomic characterisation of the whole secretome of Legionella pneumophila and functional analysis of outer membrane vesicles
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%T Developing a discrimination rule between breast cancer patients and controls using proteomics mass spectrometric data: a three-step approach
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%T Protein networking: insights into global functional organization of proteomes
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%T Glomerulus proteome analysis with two-dimensional gel electrophoresis and mass spectrometry
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%T Proteomic Analysis of a Membrane Preparation from Rat Olfactory Sensory Cilia
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%T Integrating spatially resolved three-dimensional MALDI IMS with in vivo magnetic resonance imaging
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%T Tandem mass spectrometry in physiology
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%T Bacteriome.org--an integrated protein interaction database for E. coli
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%T Bioinformatic Requirements for Protein Database Searching Using Predicted Epitopes from Disease-associated Antibodies
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%T Proteomic analysis of augmented immune responses in mouse by prime-and-boost immunization strategy with DNA vaccine coding HBsAg and rHBsAg protein
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%T Proteomics investigation of protein expression changes in ouabain induced apoptosis in human umbilical vein endothelial cells
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%A Yang YX
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%T A subcelluar proteomic investigation into vincristine-resistant gastric cancer cell line
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%A Lukas U. Zimmerli
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%A Andrew R. Pitt
%A Joshua J. Coon
%A Roland E. Schmieder
%A Karlheinz H. Peter
%A Harald Mischak
%A Walter Kolch
%A Christian Delles
%A Anna F. Dominiczak
%T Urinary Proteomic Biomarkers in Coronary Artery Disease
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%T Proteomic analysis of human thyroid fine needle aspiration fluid
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%T Toward chromatographic analysis of interacting protein networks
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%T Insights into environmental bioremediation by microorganisms through functional genomics and proteomics
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%T Identification of host proteins associated to retroviral vector particles by proteomic analysis of highly purified vector preparations
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%T The biological impact of mass-spectrometry-based proteomics
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%T Matrix-assisted laser desorption/ionization signal enhancement of peptides by picolinamidination of amino groups
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%A Dobrin Nedelkov
%T Population proteomics: Investigation of protein diversity in human populations
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%A Gregory L. Finney
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%A Michael R. Hoopmann
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%A Christine C. Wu
%A Michael J. MacCoss
%T Label-Free Comparative Analysis of Proteomics Mixtures Using Chromatographic Alignment of High-Resolution LC-MS Data
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%T Quantitative analysis of auxin-regulated proteins from basal part of leaf sheaths in rice by two-dimensional difference gel electrophoresis
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%T Quantitative Proteomic Approaches to Investigate the Membrane Proteome in Neuropsychiatric Disorders
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%A Adelina Rogowska-Wrzesinska
%A Peter Roepstorff
%T On-target sample preparation of 4-sulfophenyl isothiocyanate-derivatized peptides using AnchorChip Targets
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%T Beyond prostate-specific antigen: alternate serum markers
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%T Exploring snake venom proteomes: multifaceted analyses for complex toxin mixtures
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%T PARPs Database: A LIMS systems for protein-protein interaction data mining or Laboratory Information management system
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%T Glycomics: towards bioinformatic approaches to understanding glycosylation
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%T Resolving and Identifying Protein Components of Plant Mitochondrial Respiratory Complexes Using Three Dimensions of Gel Electrophoresis
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%T Increased levels of carbonic anhydrase II in the developing Down syndrome brain
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%T Top-down MS, a powerful complement to the high capabilities of proteolysis proteomics
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%T Protein Arrays on Patterned Porous Gold Substrates Interrogated with Mass Spectrometry: Detection of Peptides in Plasma
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%T InterPro and InterProScan: Tools for Protein Sequence Classification and Comparison
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%A Cristina Ruiz-Romero
%A Vanessa Carreira
%A Ignacio Rego
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%A Francisco J. Blanco
%T Proteomic analysis of human osteoarthritic chondrocytes reveals protein changes in stress and glycolysis
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%T Computational prediction of protein-protein interactions
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%J Mol Biotechnol
%P 1-17
%V 38
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%A Christopher J. Johnson
%A Nikolay Zhukovsky
%A Anthony E. G. Cass
%A Judit M. Nagy
%T Proteomics, nanotechnology and molecular diagnostics
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 715-730
%V 8
%N 4
%U http://dx.doi.org/10.1002/pmic.200700665

%A Michael Hamacher
%A Katrin Marcus
%A Christian Stephan
%A Joachim Klose
%A Young Mok Park
%A Helmut E. Meyer
%T HUPO Brain Proteome Project: Toward a Code of Conduct
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%A Jennifer Geddes
%A François Eudes
%A André Laroche
%A L. Brent Selinger
%T Differential expression of proteins in response to the interaction between the pathogen Fusarium graminearum and its host, Hordeum vulgare
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 545-554
%V 8
%N 3
%U http://dx.doi.org/10.1002/pmic.200700115

%A Pierre Chaurand
%A Mohammad A. Rahman
%A Tamela Hunt
%A James A. Mobley
%A Guangyu Gu
%A Joey C. Latham
%A Richard M. Caprioli
%A Susan Kasper
%T Monitoring Mouse Prostate Development by Profiling and Imaging Mass Spectrometry
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 411-423
%V 7
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%U http://www.mcponline.org/cgi/content/abstract/7/2/411?etoc

%A Buhimschi IA
%A Zambrano E
%A Pettker CM
%A Bahtiyar MO
%A Paidas M
%A Rosenberg VA
%A Thung S
%A Salafia CM
%A Buhimschi CS
%T Using Proteomic Analysis of the Human Amniotic Fluid to Identify Histologic Chorioamnionitis
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%J Obstet Gynecol
%P 403-412
%V 111
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%A Alla Yu. Rubina
%A Alexander Kolchinsky
%A Alexander A. Makarov
%A Alexander S. Zasedatelev
%T Why 3-D? Gel-based microarrays in proteomics
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 817-831
%V 8
%N 4
%U http://dx.doi.org/10.1002/pmic.200700629

%A Gary B Smejkal
%A Mary H Schweitzer
%T Will current technologies enable dinosaur proteomics?
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%D 2007
%J Expert Review of Proteomics
%P 695-699
%V 4
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%U http://dx.doi.org/10.1586/14789450.4.6.695

%A Kasinath Viswanathan
%A Klaus Früh
%T Viral proteomics: global evaluation of viruses and their interaction with the host
%0 Journal Article
%D 2007
%J Expert Review of Proteomics
%P 815-829
%V 4
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%U http://dx.doi.org/10.1586/14789450.4.6.815

%A Jeffrey S. Morris
%A Brittan N. Clark
%A Howard B. Gutstein
%T Pinnacle: a fast, automatic and accurate method for detecting and quantifying protein spots in 2-dimensional gel electrophoresis data
%0 Journal Article
%D 2008
%J Bioinformatics
%P 529-536
%V 24
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%U http://bioinformatics.oxfordjournals.org/cgi/content/abstract/24/4/529?etoc

%A Edouard C Nice
%T 4th International Peptide Symposium in conjunction with the 7th Australian Peptide Symposium and the 2nd Asia-Pacific International Peptide Symposium
%0 Journal Article
%D 2007
%J Expert Review of Proteomics
%P 705-707
%V 4
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%U http://dx.doi.org/10.1586/14789450.4.6.705

%A Wei YS
%A Zheng YH
%A Liang WB
%A Zhang JZ
%A Yang ZH
%A Lv ML
%A Jia J
%A Zhang L
%T Identification of serum biomarkers for nasopharyngeal carcinoma by proteomic analysis
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%J Cancer
%P 544-51
%V 112
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%U http://dx.doi.org/10.1002/cncr.23204

%A Hassan MI
%A Kumar V
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%T Proteomic analysis of human amniotic fluid from Rh(-) pregnancy
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%J Prenat Diagn
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%A Barrett JH
%A Cairns DA
%T Application of the random forest classification method to peaks detected from mass spectrometric proteomic profiles of cancer patients and controls
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%A Minden J
%T Comparative proteomics and difference gel electrophoresis
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%A Julia R. Smith
%A Isaac R. Matus
%A Daniel A. Beard
%A Andrew S. Greene
%T Differential expression of cardiac mitochondrial proteins
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%J PROTEOMICS
%P 446-462
%V 8
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%U http://dx.doi.org/10.1002/pmic.200701009

%A Silvia Barcelo-Batllori
%A Susana G. Kalko
%A Yaiza Esteban
%A Silvia Moreno
%A Maria C. Carmona
%A Ramon Gomis
%T Integration of DIGE and Bioinformatics Analyses Reveals a Role of the Antiobesity Agent Tungstate in Redox and Energy Homeostasis Pathways in Brown Adipose Tissue
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%J Mol Cell Proteomics
%P 378-393
%V 7
%N 2
%U http://www.mcponline.org/cgi/content/abstract/7/2/378?etoc

%A Okutucu B
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%A Telefoncu A
%T Shell-core imprinted polyacrylamide crosslinked chitosan for albumin removal from plasma
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%J J Biomed Mater Res A
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%U http://dx.doi.org/10.1002/jbm.a.31714

%A Hakan Sarioglu
%A Stefanie Brandner
%A Markus Haberger
%A Carola Jacobsen
%A Josef Lichtmannegger
%A Mark Wormke
%A Ulrich Andrae
%T Analysis of 2,3,7,8-Tetrachlorodibenzo-p-dioxin-induced Proteome Changes in 5L Rat Hepatoma Cells Reveals Novel Targets of Dioxin Action Including the Mitochondrial Apoptosis Regulator VDAC2
%0 Journal Article
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%J Mol Cell Proteomics
%P 394-410
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%U http://www.mcponline.org/cgi/content/abstract/7/2/394?etoc

%A Jia Liu
%A Jin Ouyang
%A Willy R. G. Baeyens
%A Joris R. Delanghe
%A Zhenzhen Wang
%A Jinxiu Liu
%A Huiying Zhang
%T A novel probe for chemiluminescent image detection of proteins in two-dimensional gel electrophoresis
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%J ELECTROPHORESIS
%P 716-725
%V 29
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%U http://dx.doi.org/10.1002/elps.200700424

%A Bellet V
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%A Bibeau F
%A Desmetz C
%A Berthe M
%A Rochaix P
%A Maudelonde T
%A Mangé A
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%T Proteomic analysis of RCL2 paraffin-embedded tissues
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%A Cheng AL
%A Huang WG
%A Chen ZC
%A Peng F
%A Zhang PF
%A Li MY
%A Li F
%A Li JL
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%A Yi B
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%T Identification of Novel Nasopharyngeal Carcinoma Biomarkers by Laser Capture Microdissection and Proteomic Analysis
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%J Clin Cancer Res
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%A Laaksamo E
%A Tulamo R
%A Baumann M
%A Dashti R
%A Hernesniemi J
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%A Niemelä M
%A Laakso A
%T Involvement of Mitogen-Activated Protein Kinase Signaling in Growth and Rupture of Human Intracranial Aneurysms
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%J Stroke
%P 886-92
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%U http://dx.doi.org/10.1161/STROKEAHA.107.497875

%A Helleman J
%A van der Vlies D
%A Jansen MP
%A Luider TM
%A van der Burg ME
%A Stoter G
%A Berns EM
%T Serum proteomic patterns for ovarian cancer monitoring
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%8 Nov 19, 2007

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%A Block I
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%A Felgenhauer T
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%A Torralba G
%A Hausmann M
%A Trunk U
%A Lindenstruth V
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%A Stadler V
%A Breitling F
%T Combinatorial synthesis of peptide arrays onto a microchip
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%A John P. Bannantine
%A W. Ray Waters
%A Judith R. Stabel
%A Mitchell V. Palmer
%A Lingling Li
%A Vivek Kapur
%A Michael L. Paustian
%T Development and use of a partial Mycobacterium avium subspecies paratuberculosis protein array
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%D 2008
%J PROTEOMICS
%P 463-474
%V 8
%N 3
%U http://dx.doi.org/10.1002/pmic.200700644

%A Blankman JL
%A Simon GM
%A Cravatt BF
%T A Comprehensive Profile of Brain Enzymes that Hydrolyze the Endocannabinoid 2-Arachidonoylglycerol
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%J Chem Biol
%P 1347-56
%V 14
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%A Ulrich Rothbauer
%A Kourosh Zolghadr
%A Serge Muyldermans
%A Aloys Schepers,M. Cristina Cardoso
%A Heinrich Leonhardt
%T A Versatile Nanotrap for Biochemical and Functional Studies with Fluorescent Fusion Proteins
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%J Mol Cell Proteomics
%P 282-289
%V 7
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%U http://www.mcponline.org/cgi/content/abstract/7/2/282?etoc

%A Zamora DO
%A Riviere M
%A Choi D
%A Pan Y
%A Planck SR
%A Rosenbaum JT
%A David LL
%A Smith JR
%T Proteomic profiling of human retinal and choroidal endothelial cells reveals molecular heterogeneity related to tissue of origin
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%J Mol Vis
%P 2058-65
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%A Ross JA
%A Nagy ZS
%A Kirken RA
%T The Phb1/2 phospho-complex is required for mitochondrial homeostasis and survival of human T cells
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%J J Biol Chem
%P 4699-713
%V 283
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%U http://dx.doi.org/10.1074/jbc.M708232200

%A Kling P
%A Norman A
%A Andersson PL
%A Norrgren L
%A Förlin L
%T Gender-specific proteomic responses in zebrafish liver following exposure to a selected mixture of brominated flame retardants(,)
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%J Ecotoxicol Environ Saf
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%8 Feb 5, 2008

%A Takeuchi F
%A Baba T
%A Hiramatsu K
%T Comparative analysis of MRSA
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%D 2007
%J Methods Mol Biol
%P 153-68
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%A Gesslbauer B
%A Krenn E
%A Zenzmaier C
%A Preisegger KH
%A Kungl AJ
%T Lessons from the stem cell proteome
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%J Curr Stem Cell Res Ther
%P 395-409
%V 1
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%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18220883&dopt=Abstract

%A Guoan Zhang
%A David Fenyö
%A Thomas A. Neubert
%T Use of DNA Ladders for Reproducible Protein Fractionation by Sodium Dodecyl Sulfate−Polyacrylamide Gel Electrophoresis (SDS−PAGE) for Quantitative Proteomics
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 678-686
%V 7
%N 02
%U http://dx.doi.org/10.1021/pr700601y

%A Robinson CV
%A Sali A
%A Baumeister W
%T The molecular sociology of the cell
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%J Nature
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%V 450
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%A Charles Ansong
%A Hyunjin Yoon
%A Angela D. Norbeck
%A Jean K. Gustin
%A Jason E. McDermott
%A Heather M. Mottaz
%A Joanne Rue
%A Joshua N. Adkins
%A Fred Heffron
%A Richard D. Smith
%T Proteomics Analysis of the Causative Agent of Typhoid Fever
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 546-557
%V 7
%N 02
%U http://dx.doi.org/10.1021/pr070434u

%A Michael Berna
%A Lee Ott
%A Steve Engle
%A David Watson
%A Philip Solter
%A Bradley Ackermann
%T Quantification of NTproBNP in Rat Serum Using Immunoprecipitation and LC/MS/MS: a Biomarker of Drug-Induced Cardiac Hypertrophy
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 561-566
%V 80
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%U http://dx.doi.org/10.1021/ac702311m

%A Daniel Stalder
%A André Haeberli
%A Manfred Heller
%T Evaluation of reproducibility of protein identification results after multidimensional human serum protein separation
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 414-424
%V 8
%N 3
%U http://dx.doi.org/10.1002/pmic.200700527

%A Seungjin Na
%A Eunok Paek
%A Cheolju Lee
%T CIFTER: Automated Charge-State Determination for Peptide Tandem Mass Spectra
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 1520-1528
%V 80
%N 5
%U http://dx.doi.org/10.1021/ac702038q

%A Smith JR
%A Matus I
%A Greene AS
%T A comparison of 2-D chromatography separations using UV and( 18)O quantification of proteins in similar proteomes
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%J J Sep Sci
%P 314-20
%V 31
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%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18246581&dopt=Abstract

%A Xin Guo
%A Pradipta Bandyopadhyay
%A Birgit Schilling
%A Malin M. Young
%A Naoaki Fujii
%A Tiba Aynechi
%A R. Kiplin Guy
%A Irwin D. Kuntz
%A Bradford W. Gibson
%T Partial Acetylation of Lysine Residues Improves Intraprotein Cross-Linking
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 951-960
%V 80
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%U http://dx.doi.org/10.1021/ac701636w

%A Righetti
%A Pier G.; Boschetti
%A Egisto; Monsarrat
%A Bernard
%T The Invisible Proteome: How to Capture the Low-Abundance Proteins Via Combinatorial Ligand Libraries
%0 Journal Article
%D 2007
%J Current Proteomics
%P 198-208
%V 4
%N 4
%U http://www.ingentaconnect.com/content/ben/cp/2007/00000004/00000004/art00002