%A Van G Wilson and Phillip R Heaton
%T Ubiquitin proteolytic system: focus on SUMO
%0 Journal Article
%D 2008
%J Expert Review of Proteomics
%P 121-135
%V 5
%N 1
%U http://dx.doi.org/10.1586/14789450.5.1.121

%A Carla Ferreri
%A Chryssostomos Chatgilialoglu
%A Armida Torreggiani
%A Anna Maria Salzano
%A Giovanni Renzone
%A Andrea Scaloni
%T The Reductive Desulfurization of Met and Cys Residues in Bovine RNase A Is Associated with trans Lipids Formation in a Mimetic Model of Biological Membranes
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 2007-2015
%V 7
%N 05
%U http://dx.doi.org/10.1021/pr700691x

%A Yannick Pauchet
%A Alexander Muck
%A Aleš Svatoš
%A David G. Heckel
%A Susanne Preiss
%T Mapping the Larval Midgut Lumen Proteome of Helicoverpa armigera, a Generalist Herbivorous Insect
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 1629-1639
%V 7
%N 04
%U http://dx.doi.org/10.1021/pr7006208

%A Roxas BA
%A Li Q
%T Significance analysis of microarray for relative quantitation of LC/MS data in proteomics
%0 Journal Article
%D 
%J 
%P -
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%A Melinda E. Sanders
%A Eduardo C. Dias
%A Baogang J. Xu
%A James A. Mobley
%A Dean Billheimer
%A Heinrich Roder
%A Julia Grigorieva
%A Mitchell Dowsett
%A Carlos L. Arteaga
%A Richard M. Caprioli
%T Differentiating Proteomic Biomarkers in Breast Cancer by Laser Capture Microdissection and MALDI MS
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 1500-1507
%V 7
%N 04
%U http://dx.doi.org/10.1021/pr7008109

%A Alberto Paradela and Juan Pablo Albar
%T Advances in the Analysis of Protein Phosphorylation
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 1809-1818
%V 7
%N 05
%U http://dx.doi.org/10.1021/pr7006544

%A Mayr M
%A Zampetaki A
%A Sidibe A
%A Mayr U
%A Yin X
%A De Souza AI
%A Chung YL
%A Madhu B
%A Quax PH
%A Hu Y
%A Griffiths JR
%A Xu Q
%T Proteomic and Metabolomic Analysis of Smooth Muscle Cells Derived From the Arterial Media and Adventitial Progenitors of Apolipoprotein E-Deficient Mice
%0 Journal Article
%D 2008
%J Circ Res
%P -
%V 
%N 
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%8 Apr 3, 2008

%A Butt YK
%A Lo SC
%T Detecting nitrated proteins by proteomic technologies
%0 Journal Article
%D 2008
%J Methods Enzymol
%P 17-31
%V 440
%N 
%U http://dx.doi.org/10.1016/S0076-6879(07)00802-6

%A Shabaz Mohammed
%A Karsten Kraiczek
%A Martijn W. H. Pinkse
%A Simone Lemeer
%A Joris J. Benschop
%A Albert J. R. Heck
%T Chip-Based Enrichment and NanoLC−MS/MS Analysis of Phosphopeptides from Whole Lysates
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 1565-1571
%V 7
%N 04
%U http://dx.doi.org/10.1021/pr700635a

%A Simon ES
%A Young M
%A Chan A
%A Bao ZQ
%A Andrews PC
%T Improved enrichment strategies for phosphorylated peptides on titanium dioxide using methyl esterification and pH gradient elution
%0 Journal Article
%D 2008
%J Anal Biochem
%P -
%V 
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%8 Mar 22, 2008

%A Bertucci F
%A Goncalves A
%T Clinical proteomics and breast cancer: strategies for diagnostic and therapeutic biomarker discovery
%0 Journal Article
%D 2008
%J Future Oncol
%P 271-87
%V 4
%N 2
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18407739&dopt=Abstract

%A Paolo Sonego
%A Andras Kocsor
%A Sandor Pongor
%T ROC analysis: applications to the classification of biological sequences and 3D structures
%0 Journal Article
%D 2008
%J Brief Bioinform
%P 198-209; doi:10.1093/bib/bbm064
%V 9
%N 3
%U http://bib.oxfordjournals.org/cgi/content/abstract/9/3/198?etoc

%A Susan E. Abbatiello
%A Yuan-Xiang Pan
%A Mi Zhou
%A Alan S. Wayne
%A Timothy D. Veenstra
%A Stephen P. Hunger
%A Michael S. Kilberg
%A John R. Eyler
%A Nigel G.J. Richards
%A Thomas P. Conrads
%T Mass spectrometric quantification of asparagine synthetase in circulating leukemia cells from acute lymphoblastic leukemia patients
%0 Journal Article
%D 2008
%J Journal of Proteomics
%P 61-70
%V 71
%N 1
%U http://www.sciencedirect.com/science/article/B8JDC-4RB6JNY-1/1/dfeb47bb5f9a4bf369488a590771b047

%A Xinning Jiang
%A Guanghui Han
%A Shun Feng
%A Xiaogang Jiang
%A Mingliang Ye
%A Xuebiao Yao
%A Hanfa Zou
%T Automatic Validation of Phosphopeptide Identifications by the MS2/MS3 Target-Decoy Search Strategy
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 1640-1649
%V 7
%N 04
%U http://dx.doi.org/10.1021/pr700675j

%A Luo Q
%A Gu Y
%A Wu SL
%A Rejtar T
%A Karger BL
%T Two-dimensional strong cation exchange/porous layer open tubular/mass spectrometry for ultratrace proteomic analysis using a 10 mum id poly(styrene- divinylbenzene) porous layer open tubular column with an on-line triphasic trapping column
%0 Journal Article
%D 2008
%J Electrophoresis
%P -
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%N 
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%8 Mar 26, 2008

%A Krause F
%A Seelert H
%T Detection and analysis of protein-protein interactions of organellar and prokaryotic proteomes by blue native and colorless native gel electrophoresis
%0 Journal Article
%D 
%J 
%P -
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%N 
%U http://dx.doi.org/10.1002/0471140864.ps1411s51

%A Alexandre Panchaud
%A Michael Affolter
%A Philippe Moreillon
%A Martin Kussmann
%T Experimental and computational approaches to quantitative proteomics: Status quo and outlook
%0 Journal Article
%D 2008
%J Journal of Proteomics
%P 19-33
%V 71
%N 1
%U http://www.sciencedirect.com/science/article/B8JDC-4RDS49J-1/1/ebcc16b998dd7cc6631a658fe9668200

%A Maureen B. Tracy
%A Haijian Chen
%A Dennis M. Weaver
%A Dariya I. Malyarenko
%A Maciek Sasinowski
%A Lisa H. Cazares
%A Richard R. Drake
%A O. John Semmes
%A Eugene R. Tracy
%A William E. Cooke
%T Precision enhancement of MALDI-TOF MS using high resolution peak detection and label-free alignment
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 1530-1538
%V 8
%N 8
%U http://dx.doi.org/10.1002/pmic.200701146

%A Pesavento JJ
%A Bullock CR
%A Leduc RD
%A Mizzen CA
%A Kelleher NL
%T Combinatorial modification of human histone H4 quantitated by two-dimensional liquid chromatography coupled with top down mass spectrometry
%0 Journal Article
%D 2008
%J J Biol Chem
%P -
%V 
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%8 Apr 1, 2008

%A Rupper A
%A Cardelli J
%T Large-scale purification of latex bead phagosomes from mouse macrophage cell lines and subsequent preparation for high-throughput quantitative proteomics
%0 Journal Article
%D 2008
%J Methods Mol Biol
%P 339-51
%V 445
%N 
%U http://dx.doi.org/10.1007/978-1-59745-157-4_22

%A Buhr N
%A Carapito C
%A Schaeffer C
%A Kieffer E
%A Van Dorsselaer A
%A Viville S
%T Nuclear proteome analysis of undifferentiated mouse embryonic stem and germ cells
%0 Journal Article
%D 2008
%J Electrophoresis
%P -
%V 
%N 
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%8 Apr 30, 2008

%A Buhimschi CS
%A Rosenberg VA
%A Dulay AT
%A Thung S
%A Sfakianaki AK
%A Bahtiyar MO
%A Buhimschi IA
%T Multidimensional system biology: genetic markers and proteomic biomarkers of adverse pregnancy outcome in preterm birth
%0 Journal Article
%D 2008
%J Am J Perinatol
%P 175-87
%V 25
%N 3
%U http://dx.doi.org/10.1055/s-2008-1061497

%A Jurkunas UV
%A Rawe I
%A Bitar MS
%A Zhu C
%A Harris DL
%A Colby K
%A Joyce NC
%T Decreased Expression of Peroxiredoxins in Fuchs' Endothelial Dystrophy
%0 Journal Article
%D 2008
%J Invest Ophthalmol Vis Sci
%P -
%V 
%N 
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%8 Mar 31, 2008

%A Hui L
%A Diandong H
%A Baoxia Z
%A Da W
%A Hong Y
%A Xiaoyi W
%T Serum Proteomic Profiling Associated with Immune System Impaired by Stress Using ProteinChip Technology
%0 Journal Article
%D 2008
%J Neuroimmunomodulation
%P 326-330
%V 14
%N 6
%U http://dx.doi.org/10.1159/000126921

%A Cha S
%A Zhang H
%A Ilarslan HI
%A Wurtele ES
%A Brachova L
%A Nikolau BJ
%A Yeung ES
%T DIRECT PROFILING AND IMAGING OF PLANT METABOLITES IN INTACT TISSUES BY USING COLLOIDAL GRAPHITE-ASSISTED LASER DESORPTION IONIZATION (GALDI) MASS SPECTROMETRY
%0 Journal Article
%D 2008
%J Plant J
%P -
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%N 
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%8 Apr 4, 2008

%A Seyfried NT
%A Xu P
%A Duong DM
%A Cheng D
%A Hanfelt J
%A Peng J
%T Systematic Approach for Validating the Ubiquitinated Proteome
%0 Journal Article
%D 2008 Apr 24
%J Anal Chem
%P -
%V 
%N 
%U http://dx.doi.org/10.1021/ac702516a
%8 2008 Apr 24

%A Wenqiang Tang
%A Zhiping Deng
%A Juan A. Oses-Prieto
%A Nagi Suzuki
%A Shengwei Zhu
%A Xin Zhang
%A Alma L. Burlingame
%A Zhi-Yong Wang
%T Proteomics Studies of Brassinosteroid Signal Transduction Using Prefractionation and Two-dimensional DIGE
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 728-738
%V 7
%N 4
%U http://www.mcponline.org/cgi/content/abstract/7/4/728?etoc

%A Lorenzen K
%A Olia AS
%A Uetrecht C
%A Cingolani G
%A Heck AJ
%T Determination of Stoichiometry and Conformational Changes in the First Step of the P22 Tail Assembly
%0 Journal Article
%D 2008
%J J Mol Biol
%P -
%V 
%N 
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18448123&dopt=Abstract
%8 Feb 15, 2008

%A Saw Yen Ow
%A Tanai Cardona
%A Arnaud Taton
%A Ann Magnuson
%A Peter Lindblad
%A Karin Stensjö
%A Phillip C. Wright
%T Quantitative Shotgun Proteomics of Enriched Heterocysts from Nostoc sp. PCC 7120 Using 8-Plex Isobaric Peptide Tags
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 1615-1628
%V 7
%N 04
%U http://dx.doi.org/10.1021/pr700604v

%A Irene Messana
%A Tiziana Cabras
%A Elisabetta Pisano
%A Maria Teresa Sanna
%A Alessandra Olianas
%A Barbara Manconi
%A Mariagiuseppina Pellegrini
%A Gaetano Paludetti
%A Emanuele Scarano
%A Antonella Fiorita
%A Stefania Agostino
%A Alessia M. Contucci
%A Lea Calo
%A Pasqualina M. 
%T Trafficking and Postsecretory Events Responsible for the Formation of Secreted Human Salivary Peptides: A Proteomics Approach
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 911-926
%V 7
%N 5
%U http://www.mcponline.org/cgi/content/abstract/7/5/911?etoc

%A Fulvio Magni
%A Clizia Chinello
%A Francesca Raimondo
%A Paolo Mocarelli
%A Marzia Galli Kienle
%A Marina Pitto
%T AQP1 expression analysis in human diseases: implications for proteomic characterization
%0 Journal Article
%D 2008
%J Expert Review of Proteomics
%P 29-44
%V 5
%N 1
%U http://dx.doi.org/10.1586/14789450.5.1.29

%A Gorji Marzban
%A Anita Herndl
%A Fatemeh Maghuly
%A Hermann Katinger
%A Margit Laimer
%T Mapping of fruit allergens by 2D electrophoresis and immunodetection
%0 Journal Article
%D 2008
%J Expert Review of Proteomics
%P 61-75
%V 5
%N 1
%U http://dx.doi.org/10.1586/14789450.5.1.61

%A Ying Zhang
%A Eden P. Go
%A Heather Desaire
%T Maximizing Coverage of Glycosylation Heterogeneity in MALDI-MS Analysis of Glycoproteins with Up to 27 Glycosylation Sites
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 3144-3158
%V 80
%N 9
%U http://dx.doi.org/10.1021/ac702081a

%A Lin Y
%A Zhou J
%A Bi D
%A Chen P
%A Wang X
%A Liang S
%T Sodium-deoxycholate-assisted tryptic digestion and identification of proteolytically resistant proteins
%0 Journal Article
%D 2008
%J Anal Biochem
%P -
%V 
%N 
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18384734&dopt=Abstract
%8 Mar 14, 2008

%A Stroher E
%A Dietz KJ
%A Mittler R
%T The dynamic thiol-disulphide redox proteome of the Arabidopsis thaliana chloroplast as revealed by differential electrophoretic mobility
%0 Journal Article
%D 2008 Apr 19
%J Physiol Plant
%P -
%V 
%N 
%U http://dx.doi.org/10.1111/j.1399-3054.2008.01103.x
%8 2008 Apr 19

%A Yanhong Wei
%A Leo. L. Chan
%A Dazhi Wang
%A Hongxia Zhang
%A Jianshe Wang
%A Jiayin Dai
%T Proteomic Analysis of Hepatic Protein Profiles in Rare Minnow (Gobiocypris rarus) Exposed to Perfluorooctanoic Acid
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 1729-1739
%V 7
%N 04
%U http://dx.doi.org/10.1021/pr7008059

%A Kang Y
%A Nagy JM
%A Polak JM
%A Mantalaris A
%T Proteomic characterisation of the conditioned media produced by the visceral endoderm-like cell lines HepG2 and End2: Towards a defined medium for the osteogenic/chondrogenic differentiation of embryonic stem cells
%0 Journal Article
%D 2008
%J Stem Cells Dev
%P -
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%N 
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%8 Mar 31, 2008

%A Hana Kovarova
%A Suresh Jivan Gadher
%A Alexander Archakov
%T 1st Central and Eastern European Proteomic Conference and 3rd Czech Proteomic Conference
%0 Journal Article
%D 2008
%J Expert Review of Proteomics
%P 25-28
%V 5
%N 1
%U http://dx.doi.org/10.1586/14789450.5.1.25

%A Schiffer E
%A Mischak H
%A Vanholder RC
%T Exploring the uremic toxins using proteomic technologies
%0 Journal Article
%D 2008
%J Contrib Nephrol
%P 159-71
%V 160
%N 
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18401168&dopt=Abstract

%A Ramström M
%A Zuberovic A
%A Grönwall C
%A Hanrieder J
%A Bergquist J
%A Hober S
%T Development of affinity columns for the removal of high-abundant proteins in cerebrospinal fluid
%0 Journal Article
%D 2008
%J Biotechnol Appl Biochem
%P -
%V 
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%8 Apr 15, 2008

%A Mehta A
%A Magalhães BS
%A Souza DS
%A Vasconcelos EA
%A Silva LP
%A Grossi-de-Sa MF
%A Franco OL
%A da Costa PH
%A Rocha TL
%T Rooteomics: the challenge of discovering plant defense-related proteins in roots
%0 Journal Article
%D 2008
%J Curr Protein Pept Sci
%P 108-16
%V 9
%N 2
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18393883&dopt=Abstract

%A Copeland RJ
%A Bullen Jr JW
%A Hart GW
%T Crosstalk Between GlcNAcylation and Phosphorylation: Roles in Insulin Resistance and Glucose Toxicity
%0 Journal Article
%D 2008
%J Am J Physiol Endocrinol Metab
%P -
%V 
%N 
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18445751&dopt=Abstract
%8 Apr 29, 2008

%A Jon Barbour
%A Eva M. Neuhaus
%A Heike Piechura
%A Nadine Stoepel
%A Anastasia Mashukova
%A Daniela Brunert
%A Barbara Sitek
%A Kai Stühler
%A Helmut E. Meyer
%A Hanns Hatt
%A Bettina Warscheid
%T New Insight into Stimulus-Induced Plasticity of the Olfactory Epithelium in Mus musculus by Quantitative Proteomics
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 1594-1605
%V 7
%N 04
%U http://dx.doi.org/10.1021/pr7005796

%A Ching-Seng Ang
%A Paul D. Veith
%A Stuart G. Dashper
%A Eric C. Reynolds
%T Application of 16O/18O reverse proteolytic labeling to determine the effect of biofilm culture on the cell envelope proteome of Porphyromonas gingivalis W50
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 1645-1660
%V 8
%N 8
%U http://dx.doi.org/10.1002/pmic.200700557

%A Bigelow DJ
%A Qian WJ
%T Quantitative proteome mapping of nitrotyrosines
%0 Journal Article
%D 2008
%J Methods Enzymol
%P 191-205
%V 440
%N 
%U http://dx.doi.org/10.1016/S0076-6879(07)00811-7

%A Giancarlo Liumbruno
%A Gian Maria D'Amici
%A Giuliano Grazzini
%A Lello Zolla
%T Transfusion medicine in the era of proteomics
%0 Journal Article
%D 2008
%J Journal of Proteomics
%P 34-45
%V 71
%N 1
%U http://www.sciencedirect.com/science/article/B8JDC-4S08K21-1/1/018ea9c47253d6d1ee34968731bc191f

%A Poon HF
%A Abdullah L
%A Reed J
%A Doore SM
%A Laird C
%A Mathura V
%A Mullan M
%A Crawford F
%T Improving image analysis in 2DGE-based redox proteomics by labeling protein carbonyl with fluorescent hydroxylamine
%0 Journal Article
%D 2007
%J Biol Proced Online
%P 65-72
%V 9
%N 
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18385803&dopt=Abstract

%A de Seny D
%A Fillet M
%A Ribbens C
%A Maree R
%A Meuwis MA
%A Lutteri L
%A Chapelle JP
%A Wehenkel L
%A Louis E
%A Merville MP
%A Malaise M
%T Monomeric Calgranulins Measured by SELDI-TOF Mass Spectrometry and Calprotectin Measured by ELISA as Biomarkers in Arthritis
%0 Journal Article
%D 2008 Apr 24
%J Clin Chem
%P -
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%U http://dx.doi.org/10.1373/clinchem.2007.099549
%8 2008 Apr 24

%A Matthew P. Campbell
%A Louise Royle
%A Catherine M. Radcliffe
%A Raymond A. Dwek
%A Pauline M. Rudd
%T GlycoBase and autoGU: tools for HPLC-based glycan analysis
%0 Journal Article
%D 2008
%J Bioinformatics
%P 1214-1216
%V 24
%N 9
%U http://dx.doi.org/10.1093/bioinformatics/btn090

%A Ovidiu Marina
%A Melinda A. Biernacki
%A Vladimir Brusic
%A Catherine J. Wu
%T A Concentration-Dependent Analysis Method for High Density Protein Microarrays
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 2059-2068
%V 7
%N 05
%U http://dx.doi.org/10.1021/pr700892h

%A Elvira MI
%A Galdeano MM
%A Gilardi P
%A García-Luque I
%A Serra MT
%T Proteomic analysis of pathogenesis-related proteins (PRs) induced by compatible and incompatible interactions of pepper mild mottle virus (PMMoV) in Capsicum chinense L3 plants
%0 Journal Article
%D 2008
%J J Exp Bot
%P -
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%N 
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18375936&dopt=Abstract
%8 Mar 28, 2008

%A Yue QX
%A Xie FB
%A Guan SH
%A Ma C
%A Yang M
%A Jiang BH
%A Liu X
%A Guo DA
%T Interaction of Ganoderma triterpenes with doxorubicin and proteomic characterization of the possible molecular targets of Ganoderma triterpenes
%0 Journal Article
%D 2008 Apr 16
%J Cancer Sci
%P -
%V 
%N 
%U http://dx.doi.org/10.1111/j.1349-7006.2008.00824.x
%8 2008 Apr 16

%A Kaushik DK
%A Sehgal D
%T Developing Antibacterial Vaccines in Genomics and Proteomics Era
%0 Journal Article
%D 2008
%J Scand J Immunol
%P -
%V 
%N 
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18397199&dopt=Abstract
%8 Apr 4, 2008

%A Zhong H
%A Yun D
%A Zhang C
%A Yang P
%A Fan H
%A He F
%T Comprehensive proteome analysis of mouse liver by ampholyte-free liquid-phase isoelectric focusing
%0 Journal Article
%D 2008
%J Electrophoresis
%P -
%V 
%N 
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18446803&dopt=Abstract
%8 Apr 29, 2008

%A Simone Lemeer
%A Martijn W. H. Pinkse
%A Shabaz Mohammed
%A Bas van Breukelen
%A Jeroen den Hertog
%A Monique Slijper
%A Albert J. R. Heck
%T Online Automated in Vivo Zebrafish Phosphoproteomics: From Large-Scale Analysis Down to a Single Embryo
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 1555-1564
%V 7
%N 04
%U http://dx.doi.org/10.1021/pr700667w

%A Zybailov B
%A Rutschow H
%A Friso G
%A Rudella A
%A Emanuelsson O
%A Sun Q
%A van Wijk KJ
%T Sorting signals, N-terminal modifications and abundance of the chloroplast proteome
%0 Journal Article
%D 
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%P -
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%U http://dx.doi.org/10.1371/journal.pone.0001994

%A Jian Zhou
%A Yong Lin
%A Xingcan Deng
%A Jianying Shen
%A Quanyuan He
%A Ping Chen
%A Xianchun Wang
%A Songping Liang
%T Development and Application of a Two-Phase, On-Membrane Digestion Method in the Analysis of Membrane Proteome
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 1778-1783
%V 7
%N 04
%U http://dx.doi.org/10.1021/pr070526j

%A Huck CW
%A Bonn GK
%T Analysis of proteins by capillary electrophoresis
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%D 2008
%J Methods Mol Biol
%P 507-40
%V 384
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%A Anne K. Callesen
%A Werner Vach
%A Per E. Jørgensen
%A Søren Cold
%A Ole Mogensen
%A Torben A. Kruse
%A Ole N. Jensen
%A Jonna S. Madsen
%T Reproducibility of Mass Spectrometry Based Protein Profiles for Diagnosis of Breast Cancer across Clinical Studies: A Systematic Review
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 1395-1402
%V 7
%N 04
%U http://dx.doi.org/10.1021/pr800115f

%A Dihazi H
%A Koziolek MJ
%A Söllner T
%A Kahler E
%A Klingel R
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%A Strutz F
%A Mueller GA
%T Protein adsorption during LDL-apheresis: proteomic analysis
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%J Nephrol Dial Transplant
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%8 Apr 8, 2008

%A Louise Alldridge
%A Gergana Metodieva
%A Christina Greenwood
%A Khalid Al-Janabi
%A Laura Thwaites
%A Paul Sauven
%A Metodi Metodiev
%T Proteome Profiling of Breast Tumors by Gel Electrophoresis and Nanoscale Electrospray Ionization Mass Spectrometry
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 1458-1469
%V 7
%N 04
%U http://dx.doi.org/10.1021/pr7007829

%A Whetton AD
%A Williamson AJ
%A Krijgsveld J
%A Lee BH
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%A Mummery C
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%T The time is right: proteome biology of stem cells
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%J Cell Stem Cell
%P 215-7
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%A Qing Xia
%A Feng Lu
%A Hui-Ping Yan
%A Hong-Xia Wang
%A Xia Feng
%A Yan Zhao
%A Bing-Yv Liu
%A Jie Wang
%A Ping Li
%A Yan Xue
%A Mei-Ru Hu
%A Lu Qian
%A Ning Guo
%A Song-Cheng Yang
%A Ming-Yuan Li
%A Yuan-Fang Ma
%A Bo-An Li
%A Xue-Min Zhang
%A Bei-Fen Shen
%T Autoantibody Profiling of Chinese Patients with Autoimmune Hepatitis Using Immunoproteomic Analysis
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 1963-1970
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%U http://dx.doi.org/10.1021/pr700861s

%A Leticia M. S. Lery
%A Ana Coelho
%A Wanda M. A. von Kruger
%A Mayla S. M. Gonçalves
%A Marise F. Santos
%A Richard H. Valente
%A Eidy O. Santos
%A Surza L. G. Rocha
%A Jonas Perales
%A Gilberto B. Domont
%A Katia R. S. Teixeira
%A Paulo M. Bisch
%T Protein expression profile of Gluconacetobacter diazotrophicus PAL5, a sugarcane endophytic plant growth-promoting bacterium
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 1631-1644
%V 8
%N 8
%U http://dx.doi.org/10.1002/pmic.200700912

%A Jun Liu
%A Zhen Hong
%A Jianqing Ding
%A Jianrong Liu
%A Jing Zhang
%A Shengdi Chen
%T Predominant Release of Lysosomal Enzymes by Newborn Rat Microglia After LPS Treatment Revealed by Proteomic Studies
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 2033-2049
%V 7
%N 05
%U http://dx.doi.org/10.1021/pr7007779

%A Pearson H
%T Biologists initiate plan to map human proteome
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%D 2008
%J Nature
%P 920-1
%V 452
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%A Bénard L
%A Litzler PY
%A Cosette P
%A Lemeland JF
%A Jouenne T
%A Junter GA
%T Proteomic analysis of Staphylococcus aureus biofilms grown in vitro on mechanical heart valve leaflets
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%J J Biomed Mater Res A
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%8 Apr 10, 2008

%A Weber G
%A Wildgruber R
%T Free-flow electrophoresis system for proteomics applications
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%D 2008
%J Methods Mol Biol
%P 703-16
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%A Bräutigam A
%A Shrestha RP
%A Whitten D
%A Wilkerson CG
%A Carr KM
%A Froehlich JE
%A Weber AP
%T Low-coverage massively parallel pyrosequencing of cDNAs enables proteomics in non-model species: Comparison of a species-specific database generated by pyrosequencing with databases from related species for proteome analysis of pea chloroplast envelopes
%0 Journal Article
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%J J Biotechnol
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%8 Feb 17, 2008

%A Candela M
%A Fiori J
%A Dipalo S
%A Naldi M
%A Gotti R
%A Brigidi P
%T Rapid MALDI-TOF-MS analysis in the study of interaction between whole bacterial cells and human target molecules: Binding of Bifidobacterium to human plasminogen
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%D 2008 Mar 6
%J J Microbiol Methods
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%8 2008 Mar 6

%A Peng J
%T Evaluation of proteomic strategies for analyzing ubiquitinated proteins
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%D 2008
%J BMB Rep
%P 177-83
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%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18377720&dopt=Abstract

%A Kamiie J
%T Progress of Drug Transport Study Based on Absolute Quantitative Method for Membrane Transporter Proteins
%0 Journal Article
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%J Yakugaku Zasshi
%P 507-512
%V 128
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%A Johannes Graumann
%A Nina C. Hubner
%A Jeong Beom Kim
%A Kinarm Ko
%A Markus Moser
%A Chanchal Kumar
%A Jurgen Cox
%A Hans Scholer
%A Matthias Mann
%T Stable Isotope Labeling by Amino Acids in Cell Culture (SILAC) and Proteome Quantitation of Mouse Embryonic Stem Cells to a Depth of 5,111 Proteins
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 672-683
%V 7
%N 4
%U http://www.mcponline.org/cgi/content/abstract/7/4/672?etoc

%A Hiroki Fujisawa
%A Ritsuko Ohtani-Kaneko
%A Mitsuru Naiki
%A Tomoyuki Okada
%A Kayo Masuko
%A Kazuo Yudoh
%A Naoya Suematsu
%A Kazuki Okamoto
%A Kusuki Nishioka
%A Tomohiro Kato
%T Involvement of post-translational modification of neuronal plasticity-related proteins in hyperalgesia revealed by a proteomic analysis
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 1706-1719
%V 8
%N 8
%U http://dx.doi.org/10.1002/pmic.200700928

%A Zhu LR
%A Zhang WY
%A Yu L
%A Zheng YH
%A Hu J
%A Liao QP
%T Proteiomic patterns for endometrial cancer using SELDI-TOF-MS
%0 Journal Article
%D 2008
%J J Zhejiang Univ Sci B
%P 286-90
%V 9
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%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18381802&dopt=Abstract

%A Yeo WS
%A Lee SJ
%A Lee JR
%A Kim KP
%T Nitrosative protein tyrosine modifications: biochemistry and functional significance
%0 Journal Article
%D 2008
%J BMB Rep
%P 194-203
%V 41
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%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18377722&dopt=Abstract

%A Park D
%A Kim BC
%A Cho SW
%A Park SJ
%A Choi JS
%A Kim SI
%A Bhak J
%A Lee S
%T MassNet: a functional annotation service for protein mass spectrometry data
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%D 2008
%J Nucleic Acids Res
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%A Kapp E
%A Schutz F
%T Overview of tandem mass spectrometry (MS/MS) database search algorithms
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%A Ariadni Mavrou
%A Athanasios K. Anagnostopoulos
%A Aggeliki Kolialexi
%A Konstantinos Vougas
%A Nikos Papantoniou
%A Aris Antsaklis
%A Michael Fountoulakis
%A George Th. Tsangaris
%T Proteomic Analysis of Amniotic Fluid in Pregnancies with Turner Syndrome Fetuses
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 1862-1866
%V 7
%N 05
%U http://dx.doi.org/10.1021/pr700588u

%A Mara Colzani
%A Frederic Schutz
%A Alexandra Potts
%A Patrice Waridel
%A Manfredo Quadroni
%T Relative Protein Quantification by Isobaric SILAC with Immonium Ion Splitting (ISIS)
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 927-937
%V 7
%N 5
%U http://www.mcponline.org/cgi/content/abstract/7/5/927?etoc

%A Yamazaki Y
%A Okawa K
%A Yano T
%A Tsukita S
%A Tsukita S
%T Optimized Proteomic Analysis on Gels of Cell-Cell Adhering Junctional Membrane Proteins
%0 Journal Article
%D 2008
%J Biochemistry
%P -
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%8 Apr 17, 2008

%A Ming Dong
%A Lee Lisheng Yang
%A Katherine Williams
%A Susan J. Fisher
%A Steven C. Hall
%A Mark D. Biggin
%A Jian Jin
%A H. Ewa Witkowska
%T A “Tagless” Strategy for Identification of Stable Protein Complexes Genome-wide by Multidimensional Orthogonal Chromatographic Separation and iTRAQ Reagent Tracking
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 1836-1849
%V 7
%N 05
%U http://dx.doi.org/10.1021/pr700624e

%A Juan J. Calvete
%T Journal of Proteomics -- An evolving star in the expanding proteomics galaxy
%0 Journal Article
%D 2008
%J Journal of Proteomics
%P 1-3
%V 71
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%U http://www.sciencedirect.com/science/article/B8JDC-4S62RW6-1/1/43cfcb103f0eb684ca0b0fa78db78ca5

%T Possible new biomarkers for COPD
%0 Journal Article
%D 2008
%J Expert Review of Proteomics
%P 13-16
%V 5
%N 1
%U http://dx.doi.org/10.1586/14789450.5.1.13

%A Qing-Xi Yue
%A Zhi-Wei Cao
%A Shu-Hong Guan
%A Xiao-Hui Liu
%A Lin Tao
%A Wan-Ying Wu
%A Yi-Xue Li
%A Peng-Yuan Yang
%A Xuan Liu
%A De-An Guo
%T Proteomics Characterization of the Cytotoxicity Mechanism of Ganoderic Acid D and Computer-automated Estimation of the Possible Drug Target Network
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 949-961
%V 7
%N 5
%U http://www.mcponline.org/cgi/content/abstract/7/5/949?etoc

%A Firas H. Kobeissy
%A Matthew W. Warren
%A Andrew K. Ottens
%A Shankar Sadasivan
%A Zhiqun Zhang
%A Mark S. Gold
%A Kevin K. W. Wang
%T Psychoproteomic Analysis of Rat Cortex Following Acute Methamphetamine Exposure
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 1971-1983
%V 7
%N 05
%U http://dx.doi.org/10.1021/pr800029h

%A Corti V
%A Sanchez-Ruiz Y
%A Piccoli G
%A Bergamaschi A
%A Cannistraci CV
%A Pattini L
%A Cerutti S
%A Bachi A
%A Alessio M
%A Malgaroli A
%T Protein fingerprints of cultured CA3-CA1 hippocampal neurons: comparative analysis of the distribution of synaptosomal and cytosolic proteins
%0 Journal Article
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%A Haizhen Zhang
%A Xiaoting Tang
%A Gerhard R. Munske
%A Natalia Zakharova
%A Li Yang
%A Chunxiang Zheng
%A Megan A. Wolff
%A Nikola Tolic
%A Gordon A. Anderson
%A Liang Shi
%A Matthew J. Marshall
%A James K. Fredrickson
%A James E. Bruce
%T In Vivo Identification of the Outer Membrane Protein OmcA−MtrC Interaction Network in Shewanella oneidensis MR-1 Cells Using Novel Hydrophobic Chemical Cross-Linkers
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 1712-1720
%V 7
%N 04
%U http://dx.doi.org/10.1021/pr7007658

%A Mariella Gruber-Olipitz
%A Thomas Ströbel
%A Wei-Qiang Chen
%A Michael A. Grotzer
%A Franz Quehenberger
%A Irene Slavc
%A Gert Lubec
%T Synthesis, Chaperoning, and Metabolism of Proteins Are Regulated by NT-3/TrkC Signaling in the Medulloblastoma Cell Line DAOY
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 1932-1944
%V 7
%N 05
%U http://dx.doi.org/10.1021/pr700724a

%A Melanie K. Gulston
%A Denis V. Rubtsov
%A Helen J. Atherton
%A Kieran Clarke
%A Kay E. Davies
%A Kathryn S. Lilley
%A Julian L. Griffin
%T A Combined Metabolomic and Proteomic Investigation of the Effects of a Failure to Express Dystrophin in the Mouse Heart
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 2069-2077
%V 7
%N 05
%U http://dx.doi.org/10.1021/pr800070p

%A Sylvain Fauquenoy
%A Willy Morelle
%A Agnes Hovasse
%A Audrey Bednarczyk
%A Christian Slomianny
%A Christine Schaeffer
%A Alain Van Dorsselaer
%A Stanislas Tomavo
%T Proteomics and Glycomics Analyses of N-Glycosylated Structures Involved in Toxoplasma gondii-Host Cell Interactions
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 891-910
%V 7
%N 5
%U http://www.mcponline.org/cgi/content/abstract/7/5/891?etoc

%A Klein LL
%A Jonscher KR
%A Heerwagen MJ
%A Gibbs RS
%A McManaman JL
%T Shotgun proteomic analysis of vaginal fluid from women in late pregnancy
%0 Journal Article
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%J Reprod Sci
%P 263-73
%V 15
%N 3
%U http://dx.doi.org/10.1177/1933719107311189

%A Keyvanshokooh S
%A Kalbassi MR
%A Hosseinkhani S
%A Vaziri B
%T Comparative proteomics analysis of male and female Persian sturgeon (Acipenser persicus) gonads
%0 Journal Article
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%J Anim Reprod Sci
%P -
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%8 Mar 20, 2008

%A Traum AZ
%A Schachter AD
%T Urinary proteome profiling to search for biomarkers in steroid-resistant nephrotic syndrome
%0 Journal Article
%D 2008
%J Contrib Nephrol
%P 29-36
%V 160
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%A Simó C
%A Bachi A
%A Cattaneo A
%A Guerrier L
%A Fortis F
%A Boschetti E
%A Podtelejnikov A
%A Righetti PG
%T Performance of Combinatorial Peptide Libraries in Capturing the Low-Abundance Proteome of Red Blood Cells. 1. Behavior of Mono- to Hexapeptides
%0 Journal Article
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%J Anal Chem
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%8 Apr 10, 2008

%A Farrah Kheradmand and David B Corry
%T Discovery of novel markers in allergic lung inflammation through proteomic-based technologies
%0 Journal Article
%D 2008
%J Expert Review of Proteomics
%P 9-12
%V 5
%N 1
%U http://dx.doi.org/10.1586/14789450.5.1.9

%A Julia D. Wulfkuhle
%A Runa Speer
%A Mariaelena Pierobon
%A Julie Laird
%A Virginia Espina
%A Jianghong Deng
%A Enzo Mammano
%A Sherry X. Yang
%A Sandra M. Swain
%A Donato Nitti
%A Laura J. Esserman
%A Claudio Belluco
%A Lance A. Liotta
%A Emanuel F. Petricoin III
%T Multiplexed Cell Signaling Analysis of Human Breast Cancer Applications for Personalized Therapy
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 1508-1517
%V 7
%N 04
%U http://dx.doi.org/10.1021/pr7008127

%A Klein J
%A Leupold S
%A Münch R
%A Pommerenke C
%A Johl T
%A Kärst U
%A Jänsch L
%A Jahn D
%A Retter I
%T ProdoNet: identification and visualization of prokaryotic gene regulatory and metabolic networks
%0 Journal Article
%D 2008
%J Nucleic Acids Res
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%8 Apr 25, 2008

%A Dürrschmid K
%A Reischer H
%A Schmidt-Heck W
%A Hrebicek T
%A Guthke R
%A Rizzi A
%A Bayer K
%T Monitoring of transcriptome and proteome profiles to investigate the cellular response of E. coli towards recombinant protein expression under defined chemostat conditions
%0 Journal Article
%D 2008
%J J Biotechnol
%P -
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%8 Mar 4, 2008

%A Hamid Mirzaei
%A Joshua K. McBee
%A Julian Watts
%A Ruedi Aebersold
%T Comparative Evaluation of Current Peptide Production Platforms Used in Absolute Quantification in Proteomics
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 813-823
%V 7
%N 4
%U http://www.mcponline.org/cgi/content/abstract/7/4/813?etoc

%A McDonagh B
%A Sheehan D
%T Effects of oxidative stress on protein thiols and disulphides in Mytilus edulis revealed by proteomics: Actin and protein disulphide isomerase are redox targets
%0 Journal Article
%D 2008
%J Mar Environ Res
%P -
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%8 Feb 29, 2008

%A Norman Pavelka
%A Marjorie L. Fournier
%A Selene K. Swanson
%A Mattia Pelizzola
%A Paola Ricciardi-Castagnoli
%A Laurence Florens
%A Michael P. Washburn
%T Statistical Similarities between Transcriptomics and Quantitative Shotgun Proteomics Data
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 631-644
%V 7
%N 4
%U http://www.mcponline.org/cgi/content/abstract/7/4/631?etoc

%A Juan J. Calvete
%A Gilberto B. Domont
%A Gabriel Padrón
%T Meeting report MPSA 2007
%0 Journal Article
%D 2008
%J Journal of Proteomics
%P 4-10
%V 71
%N 1
%U http://www.sciencedirect.com/science/article/B8JDC-4S4JYYK-1/1/dfc71bd52f45b9d18b1604c3209cbcbd

%A Jia Liu
%A Zachary A. Hilton
%A Steven M. Cramer
%T Chemically Selective Displacers for High-Resolution Protein Separations in Ion-Exchange Systems: Effect of Displacer-Protein Interactions
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 3357-3364
%V 80
%N 9
%U http://dx.doi.org/10.1021/ac702565p

%A Schreibelt G
%A van Horssen J
%A Haseloff RF
%A Reijerkerk A
%A van der Pol SM
%A Nieuwenhuizen O
%A Krause E
%A Blasig IE
%A Dijkstra CD
%A Ronken E
%A de Vries HE
%T Protective effects of peroxiredoxin-1 at the injured blood-brain barrier
%0 Journal Article
%D 2008
%J Free Radic Biol Med
%P -
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%N 
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%8 Apr 16, 2008

%A Charanjit Sandhu
%A Johannes A. Hewel
%A Gwenael Badis
%A Shaheynoor Talukder
%A Jian Liu
%A Timothy R. Hughes
%A Andrew Emili
%T Evaluation of Data-Dependent versus Targeted Shotgun Proteomic Approaches for Monitoring Transcription Factor Expression in Breast Cancer
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 1529-1541
%V 7
%N 04
%U http://dx.doi.org/10.1021/pr700836q

%A Tonino Alonzi
%A Carmine Mancone
%A Laura Amicone
%A Marco Tripodi
%T Elucidation of lipoprotein particles structure by proteomic analysis
%0 Journal Article
%D 2008
%J Expert Review of Proteomics
%P 91-104
%V 5
%N 1
%U http://dx.doi.org/10.1586/14789450.5.1.91

%A Hoorn EJ
%A Pisitkun T
%A Yu MJ
%A Knepper MA
%T Proteomic approaches for the study of cell signaling in the renal collecting duct
%0 Journal Article
%D 2008
%J Contrib Nephrol
%P 172-85
%V 160
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%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18401169&dopt=Abstract

%A Sérgio Mota
%A Marta Mendes
%A Deborah Penque
%A Ana V. Coelho
%A Celso Cunha
%T Changes in the proteome of Huh7 cells induced by transient expression of hepatitis D virus RNA and antigens
%0 Journal Article
%D 2008
%J Journal of Proteomics
%P 71-79
%V 71
%N 1
%U http://www.sciencedirect.com/science/article/B8JDC-4RH382V-1/1/bc518ff97b9a5a37224ea33f26b0fe26

%A Kussmann M
%A Rezzi S
%A Daniel H
%T Profiling techniques in nutrition and health research
%0 Journal Article
%D 2008
%J Curr Opin Biotechnol
%P -
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%8 Mar 28, 2008

%A Vanessa Leah Mendoza and Richard W. Vachet
%T Protein Surface Mapping Using Diethylpyrocarbonate with Mass Spectrometric Detection
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 2895-2904
%V 80
%N 8
%U http://dx.doi.org/10.1021/ac701999b

%A Hiroki Kuyama
%A Keisuke Shima
%A Kazuhiro Sonomura
%A Minoru Yamaguchi
%A Eiji Ando
%A Osamu Nishimura
%A Susumu Tsunasawa
%T A simple and highly successful C-terminal sequence analysis of proteins by mass spectrometry
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 1539-1550
%V 8
%N 8
%U http://dx.doi.org/10.1002/pmic.200701044

%A Rabbani N
%A Thornalley PJ
%T The dicarbonyl proteome: proteins susceptible to dicarbonyl glycation at functional sites in health, aging, and disease
%0 Journal Article
%D 2008
%J Ann N Y Acad Sci
%P 124-7
%V 1126
%N 
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18448805&dopt=Abstract

%A Beligni MV
%A Mayfield SP
%T Arabidopsis thaliana mutants reveal a role for CSP41a and CSP41b, two ribosome-associated endonucleases, in chloroplast ribosomal RNA metabolism
%0 Journal Article
%D 2008
%J Plant Mol Biol
%P -
%V 
%N 
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18398686&dopt=Abstract
%8 Apr 9, 2008

%A Mark A. Baker
%A Louise Hetherington
%A Gabi M. Reeves
%A R. John Aitken
%T The mouse sperm proteome characterized via IPG strip prefractionation and LC-MS/MS identification
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 1720-1730
%V 8
%N 8
%U http://dx.doi.org/10.1002/pmic.200701020

%A Steen JA
%A Steen H
%A Georgi A
%A Parker K
%A Springer M
%A Kirchner M
%A Hamprecht F
%A Kirschner MW
%T Different phosphorylation states of the anaphase promoting complex in response to antimitotic drugs: a quantitative proteomic analysis
%0 Journal Article
%D 2008
%J Proc Natl Acad Sci U S A
%P 6069-74
%V 105
%N 16
%U http://dx.doi.org/10.1073/pnas.0709807104

%A Xianquan Zhan
%A Yunpeng Du
%A John S. Crabb
%A Xiaorong Gu
%A Timothy S. Kern
%A andJohn W. Crabb
%T Targets of Tyrosine Nitration in Diabetic Rat Retina
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 864-874
%V 7
%N 5
%U http://www.mcponline.org/cgi/content/abstract/7/5/864?etoc

%A Magi E
%A Liscio C
%A Pistarino E
%A Santamaria B
%A Di Carro M
%A Tiso M
%A Scaloni A
%A Renzone G
%A Cosulich ME
%T Interdisciplinary study for the evaluation of biochemical alterations on mussel Mytilus galloprovincialis exposed to a tributyltin-polluted area
%0 Journal Article
%D 2008
%J Anal Bioanal Chem
%P -
%V 
%N 
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18401576&dopt=Abstract
%8 Apr 10, 2008

%A Webber MA
%A Coldham NG
%A Woodward MJ
%A Piddock LJ
%T Proteomic analysis of triclosan resistance in Salmonella enterica serovar Typhimurium
%0 Journal Article
%D 2008
%J J Antimicrob Chemother
%P -
%V 
%N 
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18388111&dopt=Abstract
%8 Apr 3, 2008

%A Isabelle Jutras
%A Mathieu Houde
%A Nathan Currier
%A Jonathan Boulais
%A Sophie Duclos
%A Sylvie LaBoissiere
%A Eric Bonneil
%A Paul Kearney
%A Pierre Thibault
%A Eustache Paramithiotis
%A Patrice Hugo
%A Michel Desjardins
%T Modulation of the Phagosome Proteome by Interferon-{gamma}
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 697-715
%V 7
%N 4
%U http://www.mcponline.org/cgi/content/abstract/7/4/697?etoc

%A Lee DG
%A Ahsan N
%A Lee SH
%A Lee JJ
%A Bahk JD
%A Kang KY
%A Lee BH
%T Chilling stress-induced proteomic changes in rice roots
%0 Journal Article
%D 2008 Apr 21
%J J Plant Physiol
%P -
%V 
%N 
%U http://dx.doi.org/10.1016/j.jplph.2008.02.001
%8 2008 Apr 21

%A Guaragna A
%A Amoresano A
%A Pinto V
%A Monti G
%A Mastrobuoni G
%A Marino G
%T Synthesis and Proteomic Activity Evaluation of a new Isotope-Coded Affinity Tagging (ICAT) Reagent
%0 Journal Article
%D 2008
%J Bioconjug Chem
%P -
%V 
%N 
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18407682&dopt=Abstract
%8 Apr 12, 2008

%A Kumar N
%A Gammell P
%A Meleady P
%A Henry M
%A Clynes M
%T Differential Protein Expression Following Low Temperature Culture of Suspension CHO-K1 Cells
%0 Journal Article
%D 
%J 
%P -
%V 
%N 
%U http://dx.doi.org/10.1186/1472-6750-8-42

%A John C. Tran and Alan A. Doucette
%T Rapid and Effective Focusing in a Carrier Ampholyte Solution Isoelectric Focusing System: A Proteome Prefractionation Tool
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 1761-1766
%V 7
%N 04
%U http://dx.doi.org/10.1021/pr700677u

%A Sobol MA
%A González-Camacho F
%A Kordyum EL
%A Medina FJ
%T Changes in the two-dimensional proteome of the soluble fraction of nuclear proteins from Lepidium sativum root meristematic cells grown under clinorotation
%0 Journal Article
%D 2007
%J J Gravit Physiol
%P P109-10
%V 14
%N 1
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18372723&dopt=Abstract

%A Buettner FF
%A Bendallah IM
%A Bosse JT
%A Dreckmann K
%A Nash JH
%A Langford PR
%A Gerlach GF
%T Analysis of the Actinobacillus pleuropneumoniae ArcA regulon identifies fumarate reductase as a determinant of virulence
%0 Journal Article
%D 2008
%J Infect Immun
%P -
%V 
%N 
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18378638&dopt=Abstract
%8 Mar 31, 2008

%A Yoshida Y
%A Miyamoto M
%A Bo X
%A Yaoita E
%A Yamamoto T
%T Overview of kidney and urine proteome databases
%0 Journal Article
%D 2008
%J Contrib Nephrol
%P 186-97
%V 160
%N 
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18401170&dopt=Abstract

%A Butterfield DA
%A Sultana R
%T Identification of 3-nitrotyosine-modified brain proteins by redox proteomics
%0 Journal Article
%D 2008
%J Methods Enzymol
%P 295-308
%V 440
%N 
%U http://dx.doi.org/10.1016/S0076-6879(07)00819-1

%A Hailing Lu
%A Vivian Goodell
%A Mary L. Disis
%T Humoral Immunity Directed against Tumor-Associated Antigens As Potential Biomarkers for the Early Diagnosis of Cancer
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 1388-1394
%V 7
%N 04
%U http://dx.doi.org/10.1021/pr700818f

%A Dukes AA
%A Van Laar VS
%A Cascio M
%A Hastings TG
%T Changes in endoplasmic reticulum stress proteins and aldolase A in cells exposed to dopamine
%0 Journal Article
%D 2008
%J J Neurochem
%P -
%V 
%N 
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18384645&dopt=Abstract
%8 Apr 1, 2008

%A Yuqin Wang
%A Sabina Muneton
%A Jan Sjövall
%A Jasmina N. Jovanovic
%A William J. Griffiths
%T The Effect of 24S-Hydroxycholesterol on Cholesterol Homeostasis in Neurons: Quantitative Changes to the Cortical Neuron Proteome
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 1606-1614
%V 7
%N 04
%U http://dx.doi.org/10.1021/pr7006076

%A Wang Y
%A Chen Y
%A Zhang Y
%A Wu S
%A Ma S
%A Hu S
%A Zhang L
%A Shao C
%A Li M
%A Gao Y
%T Differential ConA-enriched urinary proteome in rat experimental glomerular diseases
%0 Journal Article
%D 2008
%J Biochem Biophys Res Commun
%P -
%V 
%N 
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18440303&dopt=Abstract
%8 Apr 24, 2008

%A Issaq HJ
%A Nativ O
%A Waybright T
%A Luke B
%A Veenstra TD
%A Issaq EJ
%A Kravstov A
%A Mullerad M
%T Detection of Bladder Cancer in Human Urine by Metabolomic Profiling Using High Performance Liquid Chromatography/Mass Spectrometry
%0 Journal Article
%D 2008
%J J Urol
%P 2422-2426
%V 179
%N 6
%U http://dx.doi.org/10.1016/j.juro.2008.01.084

%A Gabriel D. Mazzucchelli
%A Nicolas A. Cellier
%A Vakhtang Mshviladzade
%A Riad Elias
%A Yong-Ho Shim
%A David Touboul
%A Loïc Quinton
%A Alain Brunelle
%A Olivier Laprévote
%A Edwin A. De Pauw
%A Marie-Claire A. De Pauw-Gillet
%T Pores Formation on Cell Membranes by Hederacolchiside A1 Leads to a Rapid Release of Proteins for Cytosolic Subproteome Analysis
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 1683-1692
%V 7
%N 04
%U http://dx.doi.org/10.1021/pr7006973

%A Christian Löbke
%A Mark Laible
%A Claudia Rappl
%A Markus Ruschhaupt
%A Özgür Sahin
%A Dorit Arlt
%A Stefan Wiemann
%A Annemarie Poustka
%A Holger Sültmann
%A Ulrike Korf
%T Contact spotting of protein microarrays coupled with spike-in of normalizer protein permits time-resolved analysis of ERBB receptor signaling
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 1586-1594
%V 8
%N 8
%U http://dx.doi.org/10.1002/pmic.200700733

%A Posner M
%A Hawke M
%A Lacava C
%A Prince CJ
%A Bellanco NR
%A Corbin RW
%T A proteome map of the zebrafish (Danio rerio) lens reveals similarities between zebrafish and mammalian crystallin expression
%0 Journal Article
%D 2008
%J Mol Vis
%P 806-14
%V 14
%N 
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18449354&dopt=Abstract

%A Siqueira WL
%A Salih E
%A Wan DL
%A Helmerhorst EJ
%A Oppenheim FG
%T Proteome of human minor salivary gland secretion
%0 Journal Article
%D 2008
%J J Dent Res
%P 445-50
%V 87
%N 5
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18434574&dopt=Abstract

%A Christensen E
%A Evans KR
%A Menard C
%A Pintilie M
%A Bristow RG
%T Practical approaches to proteomic biomarkers within prostate cancer radiotherapy trials
%0 Journal Article
%D 2008 Apr 22
%J Cancer Metastasis Rev
%P -
%V 
%N 
%U http://dx.doi.org/10.1007/s10555-008-9139-6
%8 2008 Apr 22

%A Iveta Dobreva
%A Andrew Fielding
%A Leonard J. Foster
%A Shoukat Dedhar
%T Mapping the Integrin-Linked Kinase Interactome Using SILAC
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 1740-1749
%V 7
%N 04
%U http://dx.doi.org/10.1021/pr700852r

%A Laurence Rohmer
%A Tina Guina
%A Jinzhi Chen
%A Byron Gallis
%A Greg K. Taylor
%A Scott A. Shaffer
%A Samuel I. Miller
%A Mitchell J. Brittnacher
%A David R. Goodlett
%T Determination and Comparison of the Francisella tularensis subsp.novicida U112 Proteome to Other Bacterial Proteomes
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 2016-2024
%V 7
%N 05
%U http://dx.doi.org/10.1021/pr700760z

%A Robert Sutak
%A Xiangcong Xu
%A Megan Whitnall
%A Mohammed Abul Kashem
%A Daniel Vyoral
%A Des R. Richardson
%T Proteomic analysis of hearts from frataxin knockout mice: Marked rearrangement of energy metabolism, a response to cellular stress and altered expression of proteins involved in cell structure, motility and metabolism
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 1731-1741
%V 8
%N 8
%U http://dx.doi.org/10.1002/pmic.200701049

%A Dandass YS
%A Burgess SC
%A Lawrence M
%A Bridges SM
%T Accelerating String Set Matching in FPGA Hardware for Bioinformatics Research
%0 Journal Article
%D 
%J 
%P -
%V 
%N 
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18412963&dopt=Abstract

%A Bo Zhai
%A Judit Villén
%A Sean A. Beausoleil
%A Julian Mintseris
%A Steven P. Gygi
%T Phosphoproteome Analysis of Drosophila melanogaster Embryos
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 1675-1682
%V 7
%N 04
%U http://dx.doi.org/10.1021/pr700696a

%A Trak-Smayra V
%A Dargere D
%A Noun R
%A Albuquerque M
%A Yaghi C
%A Gannagé-Yared MH
%A Bedossa P
%A Paradis V
%T Serum proteomic profiling of obese patients: correlation with pathology and evolution after bariatric surgery
%0 Journal Article
%D 2008
%J Gut
%P -
%V 
%N 
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18403495&dopt=Abstract
%8 Apr 10, 2008

%A Annunziata CM
%A Azad N
%A Dhamoon AS
%A Whiteley G
%A Kohn EC
%T Ovarian cancer in the proteomics era
%0 Journal Article
%D 2008
%J Int J Gynecol Cancer
%P 1-6
%V 18
%N Suppl 1
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18336391&dopt=Abstract

%A Micallef J
%A Gajadhar A
%A Wiley J
%A DeSouza LV
%A Michael Siu KW
%A Guha A
%T Proteomics: present and future implications in neuro-oncology
%0 Journal Article
%D 2008
%J Neurosurgery
%P 539-55; discussion 539-55
%V 62
%N 3
%U http://dx.doi.org/10.1227/01.neu.0000317302.85837.61

%A Karen S. Anderson
%A Niroshan Ramachandran
%A Jessica Wong
%A Jacob V. Raphael
%A Eugenie Hainsworth
%A Gokhan Demirkan
%A Daniel Cramer
%A Dina Aronzon
%A F. Stephen Hodi
%A Lyndsay Harris
%A Tanya Logvinenko
%A Joshua LaBaer
%T Application of Protein Microarrays for Multiplexed Detection of Antibodies to Tumor Antigens in Breast Cancer
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 1490-1499
%V 7
%N 04
%U http://dx.doi.org/10.1021/pr700804c

%A Florence Mousson
%A Annemieke Kolkman
%A W. W. M. Pim Pijnappel
%A H. Th. Marc Timmers
%A Albert J. R. Heck
%T Quantitative Proteomics Reveals Regulation of Dynamic Components within TATA-binding Protein (TBP) Transcription Complexes
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 845-852
%V 7
%N 5
%U http://www.mcponline.org/cgi/content/abstract/7/5/845?etoc

%A Ummanni R
%A Junker H
%A Zimmermann U
%A Venz S
%A Teller S
%A Giebel J
%A Scharf C
%A Woenckhaus C
%A Dombrowski F
%A Walther R
%T Prohibitin identified by proteomic analysis of prostate biopsies distinguishes hyperplasia and cancer
%0 Journal Article
%D 2008
%J Cancer Lett
%P -
%V 
%N 
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18384941&dopt=Abstract
%8 Mar 31, 2008

%A Salzano AM
%A D'Ambrosio C
%A Scaloni A
%T Mass spectrometric characterization of proteins modified by nitric oxide-derived species
%0 Journal Article
%D 2008
%J Methods Enzymol
%P 3-15
%V 440
%N 
%U http://dx.doi.org/10.1016/S0076-6879(07)00801-4

%A Mazzucchelli GD
%A Gabelica V
%A Smargiasso N
%A Fleron M
%A Ashimwe W
%A Rosu F
%A De Pauw-Gillet MC
%A Riou JF
%A De Pauw E
%T Proteome alteration induced by hTERT transfection of human fibroblast cells
%0 Journal Article
%D 
%J 
%P -
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%N 
%U http://dx.doi.org/10.1186/1477-5956-6-12

%A Menegay M
%A Lee D
%A Tabbara KF
%A Cafaro TA
%A Urrets-Zavalia JA
%A Serra HM
%A Bhattacharya SK
%T Proteomic Analysis of Climatic Keratopathy Droplets
%0 Journal Article
%D 2008
%J Invest Ophthalmol Vis Sci
%P -
%V 
%N 
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18378572&dopt=Abstract
%8 Mar 31, 2008

%A Ida Pucci-Minafra
%A Patrizia Cancemi
%A Nadia Ninfa Albanese
%A Gianluca Di Cara
%A Maria Rita Marabeti
%A Antonio Marrazzo
%A Salvatore Minafra
%T New Protein Clustering of Breast Cancer Tissue Proteomics Using Actin Content as a Cellularity Indicator
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 1412-1418
%V 7
%N 04
%U http://dx.doi.org/10.1021/pr700748m

%A Keli Ou
%A Kun Yu
%A Djohan Kesuma
%A Michelle Hooi
%A Ning Huang
%A Wei Chen
%A Suet Ying Lee
%A Xin Pei Goh
%A Lay keng Tan
%A Jia Liu
%A Sou Yen Soon
%A Suhaimi Bin Abdul Rashid
%A Thomas C. Putti
%A Hiroyuki Jikuya
%A Tetsuo Ichikawa
%A Osamu Nishimura
%A Manuel Salto-Tellez
%A Pa
%T Novel Breast Cancer Biomarkers Identified by Integrative Proteomic and Gene Expression Mapping
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 1518-1528
%V 7
%N 04
%U http://dx.doi.org/10.1021/pr700820g

%A Patrícia Cuervo
%A Elisa Cupolillo
%A Constança Britto
%A Luis Javier González
%A Fernando Costa e Silva-Filho
%A Letícia Coutinho Lopes
%A Gilberto Barbosa Domont
%A Jose Batista De Jesus
%T Differential soluble protein expression between Trichomonas vaginalis isolates exhibiting low and high virulence phenotypes
%0 Journal Article
%D 2008
%J Journal of Proteomics
%P 109-122
%V 71
%N 1
%U http://www.sciencedirect.com/science/article/B8JDC-4RR9015-1/1/c68107b6331c004e3531f58a0e116199

%A Carlee McClintock
%A Vilmos Kertesz
%A Robert L. Hettich
%T Development of an Electrochemical Oxidation Method for Probing Higher Order Protein Structure with Mass Spectrometry
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 3304-3317
%V 80
%N 9
%U http://dx.doi.org/10.1021/ac702493a

%A Roman A. Zubarev
%A Michael L. Nielsen
%A Eva M. Fung
%A Mikhail M. Savitski
%A Olga Kel-Margoulis
%A Edgar Wingender
%A Alexander Kel
%T Identification of dominant signaling pathways from proteomics expression data
%0 Journal Article
%D 2008
%J Journal of Proteomics
%P 89-96
%V 71
%N 1
%U http://www.sciencedirect.com/science/article/B8JDC-4RM1M39-1/1/c9a2989a1c5f5763226190fffda49d1d

%A Z Uuml Rbig P
%A Mischak H
%T Capillary electrophoresis coupled to mass spectrometry for biomarker discovery and diagnosis of kidney diseases
%0 Journal Article
%D 2008
%J Contrib Nephrol
%P 107-26
%V 160
%N 
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18401165&dopt=Abstract

%A Han KQ
%A Huang G
%A Gao CF
%A Wang XL
%A Ma B
%A Sun LQ
%A Wei ZJ
%T Identification of lung cancer patients by serum protein profiling using surface-enhanced laser desorption/ionization time-of-flight mass spectrometry
%0 Journal Article
%D 2008
%J Am J Clin Oncol
%P 133-9
%V 31
%N 2
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18391596&dopt=Abstract

%A Myers T
%A Law W
%A Eng JK
%A McIntosh M
%T Installation and use of the Computational Proteomics Analysis System (CPAS)
%0 Journal Article
%D 
%J 
%P -
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%U http://dx.doi.org/10.1002/0471250953.bi1305s18

%A Yin P
%A Wang YH
%A Zhang SL
%A Chu J
%A Zhuang YP
%A Wang ML
%A Zhou J
%T Isolation of soluble proteins from an industrial strain Streptomyces avermitilis in complex culture medium for two-dimensional gel electrophoresis
%0 Journal Article
%D 2008
%J J Microbiol Methods
%P -
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%N 
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18378344&dopt=Abstract
%8 Feb 23, 2008

%A Kawanishi H
%A Matsui Y
%A Ito M
%A Watanabe J
%A Takahashi T
%A Nishizawa K
%A Nishiyama H
%A Kamoto T
%A Mikami Y
%A Tanaka Y
%A Jung G
%A Akiyama H
%A Nobumasa H
%A Guilford P
%A Reeve A
%A Okuno Y
%A Tsujimoto G
%A Nakamura E
%A Ogawa O
%T Secreted CXCL1 Is a Potential Mediator and Marker of the Tumor Invasion of Bladder Cancer
%0 Journal Article
%D 2008
%J Clin Cancer Res
%P 2579-87
%V 14
%N 9
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18451219&dopt=Abstract

%A Devarajan P
%T Proteomics for the Investigation of Acute Kidney Injury
%0 Journal Article
%D 2008
%J Contrib Nephrol
%P 1-16
%V 160
%N 
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18401157&dopt=Abstract

%A Karen L. Abbott
%A Kazuhiro Aoki
%A Jae-Min Lim
%A Mindy Porterfield
%A Rachelle Johnson
%A Ruth M. O’Regan
%A Lance Wells
%A Michael Tiemeyer
%A Michael Pierce
%T Targeted Glycoproteomic Identification of Biomarkers for Human Breast Carcinoma
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 1470-1480
%V 7
%N 04
%U http://dx.doi.org/10.1021/pr700792g

%A Marcel P. Stoop
%A Lennard J. Dekker
%A Mark K. Titulaer
%A Peter C. Burgers
%A Peter A. E. Sillevis Smitt
%A Theo M. Luider
%A Rogier Q. Hintzen
%T Multiple sclerosis-related proteins identified in cerebrospinal fluid by advanced mass spectrometry
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 1576-1585
%V 8
%N 8
%U http://dx.doi.org/10.1002/pmic.200700446

%A Nicola Marchetti
%A Jacob N. Fairchild
%A Georges Guiochon
%T Comprehensive Off-Line, Two-Dimensional Liquid Chromatography. Application to the Separation of Peptide Digests
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 2756-2767
%V 80
%N 8
%U http://dx.doi.org/10.1021/ac7022662

%A Megan K. W. Di Quinzio
%A Harry M. Georgiou
%A Sarah J. Holdsworth-Carson
%A Mustafa Ayhan
%A Yujing J. Heng
%A Susan P. Walker
%A Gregory E. Rice
%A Michael Permezel
%T Proteomic Analysis of Human Cervico−Vaginal Fluid Displays Differential Protein Expression in Association with Labor Onset at Term
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 1916-1921
%V 7
%N 05
%U http://dx.doi.org/10.1021/pr7006413

%A Martin SL
%A Epperson LE
%A Rose JC
%A Kurtz CC
%A Ane C
%A Carey HV
%T Proteomic analysis of the winter-protected phenotype of hibernating ground squirrel intestine
%0 Journal Article
%D 2008 Apr 23
%J Am J Physiol Regul Integr Comp Physiol
%P -
%V 
%N 
%U http://dx.doi.org/10.1152/ajpregu.00418.2007
%8 2008 Apr 23

%A Dihua Shangguan
%A Zehui Cao
%A Ling Meng
%A Prabodhika Mallikaratchy
%A Kwame Sefah
%A Hui Wang
%A Ying Li
%A Weihong Tan
%T Cell-Specific Aptamer Probes for Membrane Protein Elucidation in Cancer Cells
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 2133-2139
%V 7
%N 05
%U http://dx.doi.org/10.1021/pr700894d

%A Pelegrini PB
%A Murad AM
%A Silva LP
%A Dos Santos RC
%A Costa FT
%A Tagliari PD
%A Bloch Jr C
%A Noronha EF
%A Miller RN
%A Franco OL
%T Identification of a novel storage glycine-rich peptide from guava (Psidium guajava) seeds with activity against Gram-negative bacteria
%0 Journal Article
%D 2008
%J Peptides
%P -
%V 
%N 
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18448201&dopt=Abstract
%8 Mar 22, 2008

%A Jung SM
%A Lee K
%A Lee JW
%A Namkoong H
%A Kim HK
%A Kim S
%A Na HR
%A Ha SA
%A Kim JR
%A Ko J
%A Kim JW
%T Both plasma retinol-binding protein and haptoglobin precursor allele 1 in CSF: Candidate biomarkers for the progression of normal to mild cognitive impairment to Alzheimer's disease
%0 Journal Article
%D 2008
%J Neurosci Lett
%P -
%V 
%N 
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18378077&dopt=Abstract
%8 Mar 18, 2008

%A Thongboonkerd V
%T Proteomics and Kidney Stone Disease
%0 Journal Article
%D 2008
%J Contrib Nephrol
%P 142-158
%V 160
%N 
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18401167&dopt=Abstract

%A Perumal Vivekanandan and Om V Singh
%T High-dimensional biology to comprehend hepatocellular carcinoma
%0 Journal Article
%D 2008
%J Expert Review of Proteomics
%P 45-60
%V 5
%N 1
%U http://dx.doi.org/10.1586/14789450.5.1.45

%A Myriam Ferro
%A Marianne Tardif
%A Erwan Reguer
%A Romain Cahuzac
%A Christophe Bruley
%A Thierry Vermat
%A Estelle Nugues
%A Marielle Vigouroux
%A Yves Vandenbrouck
%A Jérôme Garin
%A Alain Viari
%T PepLine: A Software Pipeline for High-Throughput Direct Mapping of Tandem Mass Spectrometry Data on Genomic Sequences
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 1873-1883
%V 7
%N 05
%U http://dx.doi.org/10.1021/pr070415k

%A Napolitano F
%A D'Angelo F
%A Bimonte M
%A Perrina V
%A D'Ambrosio C
%A Scaloni A
%A Russo T
%A Zambrano N
%T A Differential Proteomic Approach Reveals an Evolutionary Conserved Regulation of Nme Proteins by Fe65 in C. elegans and Mouse
%0 Journal Article
%D 2008
%J Neurochem Res
%P -
%V 
%N 
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18401706&dopt=Abstract
%8 Apr 10, 2008

%A Peter A. DiMaggio
%A Jr.
%A Christodoulos A. Floudas
%A Bingwen Lu
%A John R. Yates
%A III
%T A Hybrid Method for Peptide Identification Using Integer Linear Optimization, Local Database Search, and Quadrupole Time-of-Flight or OrbiTrap Tandem Mass Spectrometry
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 1584-1593
%V 7
%N 04
%U http://dx.doi.org/10.1021/pr700577z

%A Arthur JM
%A Janech MG
%A Varghese SA
%A Almeida JS
%A Powell TB
%T Diagnostic and prognostic biomarkers in acute renal failure
%0 Journal Article
%D 2008
%J Contrib Nephrol
%P 53-64
%V 160
%N 
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18401161&dopt=Abstract

%A Hotte NS
%A Deyholos MK
%T A flax fibre proteome: identification of proteins enriched in bast fibres
%0 Journal Article
%D 
%J 
%P -
%V 
%N 
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18447950&dopt=Abstract

%A Candiano G
%A Musante L
%A Petretto A
%A Bruschi M
%A Santucci L
%A Urbani A
%A Scolari F
%A Gusmano R
%A Carraro M
%A Zennaro C
%A Vincenti F
%A Ghiggeri GM
%T Proteomics of Plasma and Urine in Primary Nephrotic Syndrome in Children
%0 Journal Article
%D 2008
%J Contrib Nephrol
%P 17-28
%V 160
%N 
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18401158&dopt=Abstract

%A Pierce A
%A Carney L
%A Hamza HG
%A Griffiths JR
%A Zhang L
%A Whetton BA
%A Gonzalez Sanchez MB
%A Tamura T
%A Sternberg D
%A Whetton AD
%T THOC5 spliceosome protein: a target for leukaemogenic tyrosine kinases that affects inositol lipid turnover
%0 Journal Article
%D 2008
%J Br J Haematol
%P -
%V 
%N 
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18373705&dopt=Abstract
%8 Mar 27, 2008

%A Ilka Wittig
%A Jean Velours
%A Rosemary Stuart
%A Hermann Schagger
%T Characterization of Domain Interfaces in Monomeric and Dimeric ATP Synthase
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 995-1004
%V 7
%N 5
%U http://www.mcponline.org/cgi/content/abstract/7/5/995?etoc

%A Huang Q
%A Huang Q
%A Chen W
%A Wang L
%A Lin W
%A Lin J
%A Lin X
%T Identification of transgelin as a potential novel biomarker for gastric adenocarcinoma based on proteomics technology
%0 Journal Article
%D 2008
%J J Cancer Res Clin Oncol
%P -
%V 
%N 
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18446369&dopt=Abstract
%8 Apr 30, 2008

%A Novikova SI
%A He F
%A Bai J
%A Cutrufello NJ
%A Lidow MS
%A Undieh AS
%T Maternal cocaine administration in mice alters DNA methylation and gene expression in hippocampal neurons of neonatal and prepubertal offspring
%0 Journal Article
%D 
%J 
%P -
%V 
%N 
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18382688&dopt=Abstract

%A Trachtenberg S
%A Dorward LM
%A Speransky VV
%A Jaffe H
%A Andrews SB
%A Leapman RD
%T Structure of the Cytoskeleton of Spiroplasma melliferum BC3 and Its Interactions with the Cell Membrane
%0 Journal Article
%D 2008
%J J Mol Biol
%P -
%V 
%N 
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18400234&dopt=Abstract
%8 Feb 20, 2008

%A Jacob AM
%A Turck CW
%T Detection of Post-translational Modifications by Fluorescent Staining of Two-Dimensional Gels
%0 Journal Article
%D 2008
%J Methods Mol Biol
%P 21-32
%V 446
%N 
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18373247&dopt=Abstract

%A Lello Zolla
%A Sara Rinalducci
%A Paolo Antonioli
%A Pier Giorgio Righetti
%T Proteomics as a Complementary Tool for Identifying Unintended Side Effects Occurring in Transgenic Maize Seeds As a Result of Genetic Modifications
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 1850-1861
%V 7
%N 05
%U http://dx.doi.org/10.1021/pr0705082

%A David M. Smalley
%A Nicholas E. Sheman
%A Kristina Nelson
%A Dan Theodorescu
%T Isolation and Identification of Potential Urinary Microparticle Biomarkers of Bladder Cancer
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 2088-2096
%V 7
%N 05
%U http://dx.doi.org/10.1021/pr700775x

%A Clemens Bonisch
%A Sonja M Nieratschker
%A Nikos K Orfanos
%A Sandra B Hake
%T Chromatin proteomics and epigenetic regulatory circuits
%0 Journal Article
%D 2008
%J Expert Review of Proteomics
%P 105-119
%V 5
%N 1
%U http://dx.doi.org/10.1586/14789450.5.1.105

%A Haibo Qiu and Yinsheng Wang
%T Quantitative Analysis of Surface Plasma Membrane Proteins of Primary and Metastatic Melanoma Cells
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 1904-1915
%V 7
%N 05
%U http://dx.doi.org/10.1021/pr700651b

%A Scholten A
%A Aye TT
%A Heck AJ
%T A multi-angular mass spectrometric view at cyclic nucleotide dependent protein kinases: In vivo characterization and structure/function relationships
%0 Journal Article
%D 2008
%J Mass Spectrom Rev
%P -
%V 
%N 
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18381623&dopt=Abstract
%8 Mar 31, 2008

%A Siepen JA
%A Belhajjame K
%A Selley JN
%A Embury SM
%A Paton NW
%A Goble CA
%A Oliver SG
%A Stevens R
%A Zamboulis L
%A Martin N
%A Poulovassillis A
%A Jones P
%A Côté R
%A Hermjakob H
%A Pentony MM
%A Jones DT
%A Orengo CA
%A Hubbard SJ
%T ISPIDER Central: an integrated database web-server for proteomics
%0 Journal Article
%D 2008
%J Nucleic Acids Res
%P -
%V 
%N 
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18440977&dopt=Abstract
%8 Apr 25, 2008

%A Chen EI
%A Yates JR
%T Cancer Proteomics by Quantitative Shotgun Proteomics
%0 Journal Article
%D 2007
%J Mol Oncol
%P 144-159
%V 1
%N 2
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18443658&dopt=Abstract

%A Sitek B
%A Sipos B
%A Pfeiffer K
%A Grzendowski M
%A Poschmann G
%A Hawranke E
%A Köper K
%A Klöppel G
%A Meyer HE
%A Stühler K
%T Establishment of "one-piece" large-gel 2-DE for high-resolution analysis of small amounts of sample using difference gel electrophoresis saturation labelling
%0 Journal Article
%D 2008
%J Anal Bioanal Chem
%P -
%V 
%N 
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18379760&dopt=Abstract
%8 Apr 1, 2008

%A Decramer S
%A Z Uuml Rbig P
%A Wittke S
%A Mischak H
%A Bascands JL
%A Schanstra JP
%T Identification of urinary biomarkers by proteomics in newborns: use in obstructive nephropathy
%0 Journal Article
%D 2008
%J Contrib Nephrol
%P 127-41
%V 160
%N 
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18401166&dopt=Abstract

%A Leah G. Luna
%A Tracie. L. Williams
%A James L. Pirkle
%A John R. Barr
%T Ultra Performance Liquid Chromatography Isotope Dilution Tandem Mass Spectrometry for the Absolute Quantification of Proteins and Peptides
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 2688-2693
%V 80
%N 8
%U http://dx.doi.org/10.1021/ac701945h

%A Dean RA
%A Smith D
%A Overall CM
%T Proteomic identification of cellular protease substrates using isobaric tags for relative and absolute quantification (iTRAQ)
%0 Journal Article
%D 
%J 
%P -
%V 
%N 
%U http://dx.doi.org/10.1002/0471140864.ps2118s49

%A Haike Antelmann
%A Michael Hecker
%A Peter Zuber
%T Proteomic signatures uncover thiol-specific electrophile resistance mechanisms in Bacillus subtilis
%0 Journal Article
%D 2008
%J Expert Review of Proteomics
%P 77-90
%V 5
%N 1
%U http://dx.doi.org/10.1586/14789450.5.1.77

%A Sun Tae Kim
%A Sang Gon Kim
%A Young Hyun Kang
%A Yiming Wang
%A Jae-Yean Kim
%A Nari Yi
%A Ju-Kon Kim
%A Randeep Rakwal
%A Hee-Jong Koh
%A Kyu Young Kang
%T Proteomics Analysis of Rice Lesion Mimic Mutant (spl1) Reveals Tightly Localized Probenazole-Induced Protein (PBZ1) in Cells Undergoing Programmed Cell Death
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 1750-1760
%V 7
%N 04
%U http://dx.doi.org/10.1021/pr700878t

%A Andrew Pierce
%A Richard D. Unwin
%A Caroline A. Evans
%A Stephen Griffiths
%A Louise Carney
%A Liqun Zhang
%A Ewa Jaworska
%A Chia-Fang Lee
%A David Blinco
%A Michal J. Okoniewski
%A Crispin J. Miller
%A Danny A. Bitton
%A Elaine Spooncer
%A Anthony D. Whetton
%T Eight-channel iTRAQ Enables Comparison of the Activity of Six Leukemogenic Tyrosine Kinases
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 853-863
%V 7
%N 5
%U http://www.mcponline.org/cgi/content/abstract/7/5/853?etoc

%A Ananthi S
%A Chitra T
%A Bini R
%A Prajna NV
%A Lalitha P
%A Dharmalingam K
%T Comparative analysis of the tear protein profile in mycotic keratitis patients
%0 Journal Article
%D 2008
%J Mol Vis
%P 500-7
%V 14
%N 
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18385783&dopt=Abstract

%A Libia Sanz
%A José Escolano
%A Massimo Ferretti
%A Mirtha J. Biscoglio
%A Elena Rivera
%A Ernesto J. Crescenti
%A Yamileth Angulo
%A Bruno Lomonte
%A José María Gutiérrez
%A Juan J. Calvete
%T Snake venomics of the South and Central American Bushmasters. Comparison of the toxin composition of Lachesis muta gathered from proteomic versus transcriptomic analysis
%0 Journal Article
%D 2008
%J Journal of Proteomics
%P 46-60
%V 71
%N 1
%U http://www.sciencedirect.com/science/article/B8JDC-4RB6J2T-1/1/f354c3a1f95288ec3713ad7a0fa4042f

%A Taouatas N
%A Drugan MM
%A Heck AJ
%A Mohammed S
%T Straightforward ladder sequencing of peptides using a Lys-N metalloendopeptidase
%0 Journal Article
%D 2008 Apr 20
%J Nat Methods
%P -
%V 
%N 
%U http://dx.doi.org/10.1038/nmeth.1204
%8 2008 Apr 20

%A Coulombe B
%A Blanchette M
%A Jeronimo C
%T Steps towards a repertoire of comprehensive maps of human protein interaction networks: the Human Proteotheque Initiative (HuPI)
%0 Journal Article
%D 2008
%J Biochem Cell Biol
%P 149-56
%V 86
%N 2
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18443628&dopt=Abstract

%A Tassinari OW
%A Caiazzo RJ Jr
%A Ehrlich JR
%A Liu BC
%T Identifying autoantigens as theranostic targets: Antigen arrays and immunoproteomics approaches
%0 Journal Article
%D 2008
%J Curr Opin Mol Ther
%P 107-15
%V 10
%N 2
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18386222&dopt=Abstract

%A Burnum KE
%A Tranguch S
%A Mi D
%A Daikoku T
%A Dey SK
%A Caprioli RM
%T IMAGING MASS SPECTROMETRY REVEALS UNIQUE PROTEIN PROFILES DURING EMBRYO IMPLANTATION
%0 Journal Article
%D 2008
%J Endocrinology
%P -
%V 
%N 
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18403475&dopt=Abstract
%8 Apr 10, 2008

%A Erik Portelius
%A Sara F. Hansson
%A Ai Jun Tran
%A Henrik Zetterberg
%A Pierre Grognet
%A Eugeen Vanmechelen
%A Kina Höglund
%A Gunnar Brinkmalm
%A Ann Westman-Brinkmalm
%A Eckhard Nordhoff
%A Kaj Blennow
%A Johan Gobom
%T Characterization of Tau in Cerebrospinal Fluid Using Mass Spectrometry
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 2114-2120
%V 7
%N 05
%U http://dx.doi.org/10.1021/pr7008669

%A Lisa M. Miller Jenkins
%A Sharlyn J. Mazur
%A Matteo Rossi
%A Olga Gaidarenko
%A Yang Xu
%A Ettore Appella
%T Quantitative Proteomics Analysis of the Effects of Ionizing Radiation in Wild Type and p53K317R Knock-in Mouse Thymocytes
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 716-727
%V 7
%N 4
%U http://www.mcponline.org/cgi/content/abstract/7/4/716?etoc

%A Alexandre Panchaud
%A Jenny Hansson
%A Michael Affolter
%A Rachid Bel Rhlid,Stephane Piu
%A Philippe Moreillon
%A Martin Kussmann
%T ANIBAL, Stable Isotope-based Quantitative Proteomics by Aniline and Benzoic Acid Labeling of Amino and Carboxylic Groups
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 800-812
%V 7
%N 4
%U http://www.mcponline.org/cgi/content/abstract/7/4/800?etoc

%A Monroe ME
%A Shaw JL
%A Daly DS
%A Adkins JN
%A Smith RD
%T MASIC: A software program for fast quantitation and flexible visualization of chromatographic profiles from detected LC-MS(/MS) features
%0 Journal Article
%D 2008
%J Comput Biol Chem
%P -
%V 
%N 
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18440872&dopt=Abstract
%8 Feb 26, 2008

%A Evans IM
%A Britton G
%A Zachary IC
%T Vascular endothelial growth factor induces heat shock protein (HSP) 27 serine 82 phosphorylation and endothelial tubulogenesis via protein kinase D and independent of p38 kinase
%0 Journal Article
%D 2008
%J Cell Signal
%P -
%V 
%N 
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18440775&dopt=Abstract
%8 Mar 18, 2008

%A Saha S
%A Harrison SH
%A Shen C
%A Tang H
%A Radivojac P
%A Arnold RJ
%A Zhang X
%A Chen JY
%T HIP2: An Online Database of Human Plasma Proteins from Healthy Individuals
%0 Journal Article
%D 
%J 
%P -
%V 
%N 
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18439290&dopt=Abstract

%A Martens L
%A Jones P
%A Cote R
%T Using the Proteomics Identifications Database (PRIDE)
%0 Journal Article
%D 
%J 
%P -
%V 
%N 
%U http://dx.doi.org/10.1002/0471250953.bi1308s21

%A Karine Roy
%A Mickaël Meyrand
%A Gérard Corthier
%A Véronique Monnet
%A Michel-Yves Mistou
%T Proteomic investigation of the adaptation of Lactococcus lactis to the mouse digestive tract
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 1661-1676
%V 8
%N 8
%U http://dx.doi.org/10.1002/pmic.200700698

%A Xiaogang Jiang
%A Jing Dong
%A Fangjun Wang
%A Shun Feng
%A Mingliang Ye
%A Hanfa Zou
%T Automation of nanoflow liquid chromatography-tandem mass spectrometry for proteome and peptide profiling analysis by using a monolithic analytical capillary column
%0 Journal Article
%D 2008
%J ELECTROPHORESIS
%P 1612-1618
%V 29
%N 8
%U http://dx.doi.org/10.1002/elps.200700513

%A Rachel Weitzdörfer
%A Harald Höger
%A Gudrun Burda
%A Arnold Pollak
%A Gert Lubec
%T Differences in Hippocampal Protein Expression at 3 Days, 3 Weeks, and 3 Months Following Induction of Perinatal Asphyxia in the Rat
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 1945-1952
%V 7
%N 05
%U http://dx.doi.org/10.1021/pr700835y

%A Bunk S
%A Susnea I
%A Rupp J
%A Summersgill JT
%A Maass M
%A Stegmann W
%A Schrattenholz A
%A Wendel A
%A Przybylski M
%A Hermann C
%T Immunoproteomic Identification and Serological Responses to Novel Chlamydia pneumoniae Antigens That Are Associated with Persistent C. pneumoniae Infections
%0 Journal Article
%D 2008
%J J Immunol
%P 5490-8
%V 180
%N 8
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18390732&dopt=Abstract

%A Luísa V. Lopes
%A Laure F. Marvin-Guy
%A Andreas Fuerholz
%A Michael Affolter
%A Ziad Ramadan
%A Martin Kussmann
%A Laurent B. Fay
%A Gabriela E. Bergonzelli
%T Maternal deprivation affects the neuromuscular protein profile of the rat colon in response to an acute stressor later in life
%0 Journal Article
%D 2008
%J Journal of Proteomics
%P 80-88
%V 71
%N 1
%U http://www.sciencedirect.com/science/article/B8JDC-4RM7N6D-1/1/a9b7bf304a5f55ec26c9d6b368c37961

%A Feng Tao
%T 1st NCI Annual Meeting on Clinical Proteomic Technologies for Cancer
%0 Journal Article
%D 2008
%J Expert Review of Proteomics
%P 17-20
%V 5
%N 1
%U http://dx.doi.org/10.1586/14789450.5.1.17

%A Jianhua Zhang
%A Jianjun Sui
%A Chi Bun Ching
%A Wei Ning Chen
%T Protein profile in neuroblastoma cells incubated with S- and R-enantiomers of ibuprofen by iTRAQ-coupled 2-D LC-MS/MS analysis: Possible action of induced proteins on Alzheimer's disease
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 1595-1607
%V 8
%N 8
%U http://dx.doi.org/10.1002/pmic.200700556

%A Owen W. Nadeau
%A Gerald J. Wyckoff
%A Justin E. Paschall
%A Antonio Artigues
%A Jessica Sage
%A Maria T. Villar
%A Gerald M. Carlson
%T CrossSearch, a User-friendly Search Engine for Detecting Chemically Cross-linked Peptides in Conjugated Proteins
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 739-749
%V 7
%N 4
%U http://www.mcponline.org/cgi/content/abstract/7/4/739?etoc

%A Rho S
%A You S
%A Kim Y
%A Hwang D
%T From proteomics toward systems biology: integration of different types of proteomics data into network models
%0 Journal Article
%D 2008
%J BMB Rep
%P 184-93
%V 41
%N 3
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18377721&dopt=Abstract

%A Oriana E. Hawkins
%A Rodney S. VanGundy
%A Annette M. Eckerd
%A Wilfried Bardet
%A Rico Buchli
%A Jon A. Weidanz
%A William H. Hildebrand
%T Identification of Breast Cancer Peptide Epitopes Presented by HLA-A*0201
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 1445-1457
%V 7
%N 04
%U http://dx.doi.org/10.1021/pr700761w

%A Smith JC
%A Figeys D
%T Recent developments in mass spectrometry-based quantitative phosphoproteomics
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%D 2008
%J Biochem Cell Biol
%P 137-48
%V 86
%N 2
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18443627&dopt=Abstract

%A Sergio L. S. Freire
%A Hao Yang
%A Aaron R. Wheeler
%T A practical interface for microfluidics and nanoelectrospray mass spectrometry
%0 Journal Article
%D 2008
%J ELECTROPHORESIS
%P 1836-1843
%V 29
%N 9
%U http://dx.doi.org/10.1002/elps.200700661

%A Tedesco S
%A Doyle H
%A Redmond G
%A Sheehan D
%T Gold nanoparticles and oxidative stress in Mytilus edulis
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%D 2008
%J Mar Environ Res
%P -
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%N 
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%8 Feb 26, 2008

%A Xu X
%A Wang X
%A Liu Y
%A Liu B
%A Wu H
%A Yang P
%T Trypsin entrapped in poly(diallyldimethylammonium chloride) silica sol-gel microreactor coupled to matrix-assisted laser desorption/ionization time-of-flight mass spectrometry
%0 Journal Article
%D 2008
%J Rapid Commun Mass Spectrom
%P 1257-64
%V 22
%N 8
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18383213&dopt=Abstract

%A Eden P. Go
%A Janet Irungu
%A Ying Zhang
%A Dilusha S. Dalpathado
%A Hua-Xin Liao
%A Laura L. Sutherland
%A S. Munir Alam
%A Barton F. Haynes
%A Heather Desaire
%T Glycosylation Site-Specific Analysis of HIV Envelope Proteins (JR-FL and CON-S) Reveals Major Differences in Glycosylation Site Occupancy, Glycoform Profiles, and Antigenic Epitopesʼ Accessibility
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 1660-1674
%V 7
%N 04
%U http://dx.doi.org/10.1021/pr7006957

%A Nikolai Zvonok
%A John Williams
%A Meghan Johnston
%A Lakshmipathi Pandarinathan
%A David R. Janero
%A Jing Li
%A Srinivasan C. Krishnan
%A Alexandros Makriyannis
%T Full Mass Spectrometric Characterization of Human Monoacylglycerol Lipase Generated by Large-Scale Expression and Single-Step Purification
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 2158-2164
%V 7
%N 05
%U http://dx.doi.org/10.1021/pr700839z

%A Kevin S. Shores
%A D. Gomika Udugamasooriya
%A Thomas Kodadek
%A Daniel R. Knapp
%T Use of Peptide Analogue Diversity Library Beads for Increased Depth of Proteomic Analysis: Application to Cerebrospinal Fluid
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 1922-1931
%V 7
%N 05
%U http://dx.doi.org/10.1021/pr7006889

%A Lee EY
%A Choi DS
%A Kim KP
%A Gho YS
%T Proteomics in gram-negative bacterial outer membrane vesicles
%0 Journal Article
%D 2008 Apr 17
%J Mass Spectrom Rev
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%N 
%U http://dx.doi.org/10.1002/mas.20175
%8 2008 Apr 17

%A Yan Li
%A Dawei Qi
%A Chunhui Deng
%A Pengyuan Yang
%A Xiangmin Zhang
%T Cerium Ion-Chelated Magnetic Silica Microspheres for Enrichment and Direct Determination of Phosphopeptides by Matrix-Assisted Laser Desorption Ionization Mass Spectrometry
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 1767-1777
%V 7
%N 04
%U http://dx.doi.org/10.1021/pr070385l

%A Lopez-Sanchez LM
%A Corrales FJ
%A De La Mata M
%A Muntane J
%A Rodriguez-Ariza A
%T Detection and proteomic identification of s-nitrosated proteins in human hepatocytes
%0 Journal Article
%D 2008
%J Methods Enzymol
%P 273-81
%V 440
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%U http://dx.doi.org/10.1016/S0076-6879(07)00817-8

%A Cheung KJ
%A Tilleman K
%A Deforce D
%A Colle I
%A Van Vlierberghe H
%T Proteomics in liver fibrosis is more than meets the eye
%0 Journal Article
%D 2008
%J Eur J Gastroenterol Hepatol
%P 450-64
%V 20
%N 5
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18403948&dopt=Abstract

%A Dani D
%A Dencher NA
%T Native-DIGE: A new look at the mitochondrial membrane proteome
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%J Biotechnol J
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%8 Apr 30, 2008

%A Dupont FM
%T Metabolic pathways of the wheat (Triticum aestivum) endosperm amyloplast revealed by proteomics
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%A Ekegren T
%A Hanrieder J
%A Bergquist J
%T Clinical perspectives of high-resolution mass spectrometry-based proteomics in neuroscience-Exemplified in amyotrophic lateral sclerosis biomarker discovery research
%0 Journal Article
%D 2008
%J J Mass Spectrom
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%8 Apr 17, 2008

%A Parikh AA
%A Johnson JC
%A Merchant NB
%T Genomics and proteomics in predicting cancer outcomes
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%D 2008
%J Surg Oncol Clin N Am
%P 257-77
%V 17
%N 2
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18375352&dopt=Abstract

%A Anne K. Callesen
%A Werner Vach
%A Per E. Jørgensen
%A Søren Cold
%A Qihua Tan
%A René dePont Christensen
%A Ole Mogensen
%A Torben A. Kruse
%A Ole N. Jensen
%A Jonna S. Madsen
%T Combined Experimental and Statistical Strategy for Mass Spectrometry Based Serum Protein Profiling for Diagnosis of Breast Cancer: A Case-Control Study
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 1419-1426
%V 7
%N 04
%U http://dx.doi.org/10.1021/pr7007576

%A KiBeom Lee
%A Hong-Gu Lee
%A KyungBae Pi
%A Yun-Jaie Choi
%T The effect of low pH on protein expression by the probiotic bacterium Lactobacillus reuteri
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 1624-1630
%V 8
%N 8
%U http://dx.doi.org/10.1002/pmic.200700663

%A Valkenborg D
%A Van Sanden S
%A Lin D
%A Kasim A
%A Zhu Q
%A Haldermans P
%A Jansen I
%A Shkedy Z
%A Burzykowski T
%T A cross-validation study to select a classification procedure for clinical diagnosis based on proteomic mass spectrometry
%0 Journal Article
%D 
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%A Jean Breton
%A Matthew C. Gage
%A Alastair W. Hay
%A Jeffrey N. Keen
%A Christopher P. Wild
%A Clare Donnellan
%A John B. C. Findlay
%A Laura J. Hardie
%T Proteomic Screening of a Cell Line Model of Esophageal Carcinogenesis Identifies Cathepsin D and Aldo-Keto Reductase 1C2 and 1B10 Dysregulation in Barrett’s Esophagus and Esophageal Adenocarcinoma
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 1953-1962
%V 7
%N 05
%U http://dx.doi.org/10.1021/pr7007835

%A Shui-Tein Chen
%A Tai-Long Pan
%A Hsueh-Fen Juan
%A Tai-Yuan Chen
%A Yih-Shyan Lin
%A Chun-Ming Huang
%T Breast Tumor Microenvironment: Proteomics Highlights the Treatments Targeting Secretome
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 1379-1387
%V 7
%N 04
%U http://dx.doi.org/10.1021/pr700745n

%A Dhimankrishna Ghosh
%A Ron C. Beavis
%A John A. Wilkins
%T The Identification and Characterization of Membranome Components
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 1572-1583
%V 7
%N 04
%U http://dx.doi.org/10.1021/pr070509u

%A Kangueane P
%A Sakharkar MK
%T HLA-peptide binding prediction using structural and modeling principles
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%D 2007
%J Methods Mol Biol
%P 293-9
%V 409
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%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18450009&dopt=Abstract

%A Ishino Y
%A Taniguchi H
%T An a posteriori calibration method for improving protein identification accuracy in proteomics using electrospray ionization time-of-flight tandem mass spectrometry
%0 Journal Article
%D 2008
%J Rapid Commun Mass Spectrom
%P 1335-8
%V 22
%N 8
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18383205&dopt=Abstract

%A Maria Marcantonio
%A Matthias Trost
%A Mathieu Courcelles
%A Michel Desjardins
%A Pierre Thibault
%T Combined Enzymatic and Data Mining Approaches for Comprehensive Phosphoproteome Analyses: Application to Cell Signaling Events of Interferon-{gamma}-Stimulated Macrophages
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 645-660
%V 7
%N 4
%U http://www.mcponline.org/cgi/content/abstract/7/4/645?etoc

%A Casati P
%A Campi M
%A Chu F
%A Suzuki N
%A Maltby D
%A Guan S
%A Burlingame AL
%A Walbot V
%T Histone Acetylation and Chromatin Remodeling Are Required for UV-B-Dependent Transcriptional Activation of Regulated Genes in Maize
%0 Journal Article
%D 2008
%J Plant Cell
%P -
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%8 Apr 8, 2008

%A Perera CN
%A Spalding HS
%A Mohammed SI
%A Camarillo IG
%T Identification of Proteins Secreted from Leptin Stimulated MCF-7 Breast Cancer Cells: A Dual proteomic Approach
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%D 2008
%J Exp Biol Med (Maywood)
%P -
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%8 Apr 11, 2008

%A Xiao X. Han
%A Hui Y. Jia
%A Yan F. Wang
%A Zhi C. Lu
%A Chun X. Wang
%A Wei Q. Xu
%A Bing Zhao
%A Yukihiro Ozaki
%T Analytical Technique for Label-Free Multi-Protein Detection Based on Western Blot and Surface-Enhanced Raman Scattering
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 2799-2804
%V 80
%N 8
%U http://dx.doi.org/10.1021/ac702390u

%A Quanzhou Luo
%A Ye Gu
%A Shiaw-Lin Wu
%A Tomas Rejtar
%A Barry L. Karger
%T Two-dimensional strong cation exchange/porous layer open tubular/mass spectrometry for ultratrace proteomic analysis using a 10 ?m id poly(styrene- divinylbenzene) porous layer open tubular column with an on-line triphasic trapping column
%0 Journal Article
%D 2008
%J ELECTROPHORESIS
%P 1604-1611
%V 29
%N 8
%U http://dx.doi.org/10.1002/elps.200700741

%A Buhimschi IA
%A Zhao G
%A Rosenberg VA
%A Abdel-Razeq S
%A Thung S
%A Buhimschi CS
%T Multidimensional proteomics analysis of amniotic fluid to provide insight into the mechanisms of idiopathic preterm birth
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%A Wilson R
%A Belluoccio D
%A Bateman JF
%T Proteomic analysis of cartilage proteins
%0 Journal Article
%D 2008
%J Methods
%P 22-31
%V 45
%N 1
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18442702&dopt=Abstract

%A Hamrita B
%A Chahed K
%A Kabbage M
%A Guillier CL
%A Trimeche M
%A Chaieb A
%A Chouchane L
%T Identification of tumor antigens that elicit a humoral immune response in breast cancer patients' sera by serological proteome analysis (SERPA)
%0 Journal Article
%D 2008 Mar 27
%J Clin Chim Acta
%P -
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%8 2008 Mar 27

%A Sharmini Alagaratnam
%A Bart J. A. Mertens
%A Johannes C. Dalebout
%A André M. Deelder
%A Gert-Jan B. van Ommen
%A Johan T. den Dunnen
%A Peter A. C. 't Hoen
%T Serum protein profiling in mice: Identification of Factor XIIIa as a potential biomarker for muscular dystrophy
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 1552-1563
%V 8
%N 8
%U http://dx.doi.org/10.1002/pmic.200700857

%A Hubert Hondermarck
%A Christophe Tastet
%A Ikram El Yazidi-Belkoura
%A Robert-Alain Toillon
%A Xuefen Le Bourhis
%T Proteomics of Breast Cancer: The Quest for Markers and Therapeutic Targets
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 1403-1411
%V 7
%N 04
%U http://dx.doi.org/10.1021/pr700870c

%A Jia Liu
%A Xia Liu
%A Willy R. G. Baeyens
%A Joris R. Delanghe
%A Jin Ouyang
%T A Novel Probe Au(III) for Chemiluminescent Image Detection of Protein Blots on Nitrocellulose Membranes
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 1884-1890
%V 7
%N 05
%U http://dx.doi.org/10.1021/pr700616u

%A Liao WL
%A Turko IV
%T Strategy combining separation of isotope-labeled unfolded proteins and matrix-assisted laser desorption/ionization mass spectrometry analysis enables quantification of a wide range of serum proteins
%0 Journal Article
%D 2008
%J Anal Biochem
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%8 Mar 15, 2008

%A Chora S
%A McDonagh B
%A Sheehan D
%A Starita-Geribaldi M
%A Roméo M
%A Bebianno MJ
%T Ubiquitination and carbonylation as markers of oxidative-stress in Ruditapes decussatus
%0 Journal Article
%D 2008
%J Mar Environ Res
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%8 Feb 26, 2008

%A Carpentier SC
%A Panis B
%A Vertommen A
%A Swennen R
%A Sergeant K
%A Renaut J
%A Laukens K
%A Witters E
%A Samyn B
%A Devreese B
%T Proteome analysis of non-model plants: A challenging but powerful approach
%0 Journal Article
%D 2008
%J Mass Spectrom Rev
%P -
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%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18381744&dopt=Abstract
%8 Apr 1, 2008

%A Lu Tie
%A Jian-Zhao Zhang
%A Yan-Hua Lin
%A Tian-Hao Su
%A Yu-Hua Li
%A Hong-Li Wu
%A You-Yi Zhang
%A He-Ming Yu
%A Xue-Jun Li
%T Epinephrine Increases Phosphorylation of MAP-2c in Rat Pheochromocytoma Cells (PC12 Cells) via a Protein Kinase C- and Mitogen Activated Protein Kinase-Dependent Mechanism
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 1704-1711
%V 7
%N 04
%U http://dx.doi.org/10.1021/pr700711s

%A Sharon J. Pitteri
%A Vitor M. Faca
%A Karen S. Kelly-Spratt
%A A. Erik Kasarda
%A Hong Wang
%A Qing Zhang
%A Lisa Newcomb
%A Alexei Krasnoselsky
%A Sophie Paczesny
%A Gina Choi
%A Matthew Fitzgibbon
%A Martin W. McIntosh
%A Christopher J. Kemp
%A Samir M. Hanash
%T Plasma Proteome Profiling of a Mouse Model of Breast Cancer Identifies a Set of Up-Regulated Proteins in Common with Human Breast Cancer Cells
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 1481-1489
%V 7
%N 04
%U http://dx.doi.org/10.1021/pr7007994

%A Decanini A
%A Karunadharma PR
%A Nordgaard CL
%A Feng X
%A Olsen TW
%A Ferrington DA
%T Human retinal pigment epithelium proteome changes in early diabetes
%0 Journal Article
%D 2008
%J Diabetologia
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%8 Apr 15, 2008

%A Petr ?otkovský
%A Martin Hubálek
%A Lenka Hernychová
%A Petr Novák
%A Marie Havranová
%A Iva ?etinová
%A Andrea Kitanovi?ová
%A Martin Fuchs
%A Ji?í Stulík
%A Ludmila Tu?ková
%T Proteomic analysis of wheat proteins recognized by IgE antibodies of allergic patients
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 1677-1691
%V 8
%N 8
%U http://dx.doi.org/10.1002/pmic.200700347

%A Erik Bjorling
%A Cecilia Lindskog
%A Per Oksvold
%A Jerker Linne
%A Caroline Kampf,Sophia Hober
%A Mathias Uhlen
%A Fredrik Ponten
%T A Web-based Tool for in Silico Biomarker Discovery Based on Tissue-specific Protein Profiles in Normal and Cancer Tissues
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 825-844
%V 7
%N 5
%U http://www.mcponline.org/cgi/content/abstract/7/5/825?etoc

%A Gao M
%A Zhang X
%T Multi-dimensional capillary electrophoresis and chromatography for proteomic analysis
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%D 2008
%J Methods Mol Biol
%P 783-801
%V 384
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%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18392595&dopt=Abstract

%A Jun Zhang
%A Xiaohai Li
%A Michael Mueller
%A Yueju Wang
%A Chenggong Zong
%A Ning Deng
%A Thomas M. Vondriska
%A David A. Liem
%A Jeong-In Yang
%A Paavo Korge
%A Henry Honda
%A James N. Weiss
%A Rolf Apweiler
%A Peipei Ping
%T Systematic characterization of the murine mitochondrial proteome using functionally validated cardiac mitochondria
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 1564-1575
%V 8
%N 8
%U http://dx.doi.org/10.1002/pmic.200700851

%A Kong FM
%A Ao X
%A Wang L
%A Lawrence TS
%T The use of blood biomarkers to predict radiation lung toxicity: a potential strategy to individualize thoracic radiation therapy
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%D 2008
%J Cancer Control
%P 140-50
%V 15
%N 2
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18376381&dopt=Abstract

%A Leduc RD
%A Kelleher NL
%T Using ProSight PTM and related tools for targeted protein identification and characterization with high mass accuracy tandem MS data
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%A Gupta N
%A Benhamida J
%A Bhargava V
%A Goodman D
%A Kain E
%A Kerman I
%A Nguyen N
%A Ollikainen N
%A Rodriguez J
%A Wang J
%A Lipton MS
%A Romine M
%A Bafna V
%A Smith RD
%A Pevzner PA
%T Comparative proteogenomics: Combining mass spectrometry and comparative genomics to analyze multiple genomes
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%J Genome Res
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%8 2008 Apr 21

%A Lacerda CM
%A Xin L
%A Rogers I
%A Reardon KF
%T Analysis of iTRAQ data using Mascot and Peaks quantification algorithms
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%J Brief Funct Genomic Proteomic
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%8 Apr 4, 2008

%A Gramolini A
%A Peterman S
%A Kislinger T
%T Mass Spectrometry-based Proteomics: A Useful Tool for Biomarker Discovery?
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%J Clin Pharmacol Ther
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%8 Mar 19, 2008

%A Zhao Z
%A Lange DJ
%A Ho L
%A Bonini S
%A Shao B
%A Salton SR
%A Thomas S
%A Pasinetti GM
%T Vgf is a novel biomarker associated with muscle weakness in amyotrophic lateral sclerosis (ALS), with a potential role in disease pathogenesis
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%D 2008
%J Int J Med Sci
%P 92-9
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%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18432310&dopt=Abstract

%A Flavio Monigatti and Hanno Steen
%T SALAMI (Spectrum ALignments Using High Accuracy Mass and HIgh Sensitivity Data): How To Make the Best out of Hybrid MS/MS Data
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 1984-1993
%V 7
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%U http://dx.doi.org/10.1021/pr7006895

%A Li G
%A Ewers C
%A Laturnus C
%A Diehl I
%A Alt K
%A Dai J
%A Antão EM
%A Schnetz K
%A Wieler LH
%T Characterization of a yjjQ mutant of avian pathogenic Escherichia coli (APEC)
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%D 2008
%J Microbiology
%P 1082-1093
%V 154
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%A Vydra J
%A Selicharova I
%A Smutna K
%A Sanda M
%A Matouskova E
%A Bursikova E
%A Prchalova M
%A Velenska Z
%A Coufal D
%A Jiracek J
%T Two-dimensional electrophoretic comparison of metastatic and non-metastatic human breast tumors using in vitro cultured epithelial cells derived from the cancer tissues
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%A Kim H
%A Lubman DM
%T Micro-proteome analysis using micro-chromatofocusing in intact protein separations
%0 Journal Article
%D 2008
%J J Chromatogr A
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%8 Mar 27, 2008

%A Xiang M
%A Xue C
%A Huicai L
%A Dacheng H
%T Large-scale identification of novel mitosis-specific phosphoproteins
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%J Biochim Biophys Acta
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%A Raaijmakers R
%A Pluk W
%A Schroder CH
%A Gloerich J
%A Cornelissen EA
%A Wessels HJ
%A Willems JL
%A Monnens LA
%A van den Heuvel LP
%T Proteomic profiling and identification in peritoneal fluid of children treated by peritoneal dialysis
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%D 2008 Apr 19
%J Nephrol Dial Transplant
%P -
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%8 2008 Apr 19

%A Rahman-Roblick R
%A Hellman U
%A Becker S
%A Bader FG
%A Auer G
%A Wiman KG
%A Roblick UJ
%T Proteomic identification of p53-dependent protein phosphorylation
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%J Oncogene
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%8 Apr 28, 2008

%A He Z
%A Yang C
%A Yu W
%T Peak Bagging for Peptide Mass Fingerprinting
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%J Bioinformatics
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%8 Apr 7, 2008

%A Margaret B. Lucitt
%A Thomas S. Price
%A Angel Pizarro
%A Weichen Wu
%A Anastasia K. Yocum
%A Christoph Seiler
%A Michael A. Pack
%A Ian A. Blair
%A Garret A. FitzGerald
%A Tilo Grosser
%T Analysis of the Zebrafish Proteome during Embryonic Development
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 981-994
%V 7
%N 5
%U http://www.mcponline.org/cgi/content/abstract/7/5/981?etoc

%A Palkar PS
%A Kakhniashvili DG
%A Goodman SR
%A Mehendale HM
%T The rat red blood cell proteome is altered by priming with 2-butoxyethanol
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%J Toxicol Appl Pharmacol
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%A Zhu T
%A Song A
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%A Ma D
%T Overexpression of vimentin contributes to prostate cancer invasion and metastasis via src regulation
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%J Anticancer Res
%P 327-34
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%A Pandhal J
%A Wright PC
%A Biggs CA
%T Proteomics with a pinch of salt: a cyanobacterial perspective
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%A Kiyotaka Horie
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%A Misato Hirano
%A Junko Shibato
%A Hyung Wook Nam
%A Yu Sam Kim
%A Yoshiaki Kouzuma
%A Ganesh Kumar Agrawal
%A Yoshinori Masuo
%A Masami Yonekura
%T Proteomics of Two Cultivated Mushrooms Sparassis crispa and Hericium erinaceum Provides Insight into their Numerous Functional Protein Components and Diversity
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%J JOURNAL OF PROTEOME RESEARCH
%P 1819-1835
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%A Rossing K
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%A Zürbig P
%A Novak J
%A Julian BA
%A Good DM
%A Coon JJ
%A Tarnow L
%A Rossing P
%T Urinary Proteomics in Diabetes and CKD
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%J J Am Soc Nephrol
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%8 Apr 30, 2008

%A Jacob A. Galan
%A Minjie Guo
%A Elda E. Sanchez
%A Esteban Cantu
%A Alexis Rodriguez-Acosta
%A John C. Perez
%A W. Andy Tao
%T Quantitative Analysis of Snake Venoms Using Soluble Polymer-based Isotope Labeling
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%D 2008
%J Mol Cell Proteomics
%P 785-799
%V 7
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%U http://www.mcponline.org/cgi/content/abstract/7/4/785?etoc

%A Grantzdorffer I
%A Carl-McGrath S
%A Ebert MP
%A Rocken C
%T Proteomics of pancreatic cancer
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%J Pancreas
%P 329-36
%V 36
%N 4
%U http://dx.doi.org/10.1097/MPA.0b013e31815cc452

%A Mark J. Raftery
%T Enrichment by Organomercurial Agarose and Identification of Cys-Containing Peptides from Yeast Cell Lysates
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 3334-3341
%V 80
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%U http://dx.doi.org/10.1021/ac702539q

%A Sanz-Medel A
%T Heteroatom(isotope)-tagged proteomics via ICP-MS: screening and quantification of proteins and their post-translational modifications
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%J Anal Bioanal Chem
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%8 2008 Apr 22

%A Ramos Y
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%A Llopiz A
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%T Selectivity of bacterial proteome fractionation based on differential solubility: A mass spectrometry evaluation
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%8 Mar 22, 2008

%A Christina I. Orazine
%A Marina Hincapie
%A William S. Hancock
%A Maureen Hattersley
%A Jeff H. Hanke
%T A Proteomic Analysis of the Plasma Glycoproteins of a MCF-7 Mouse Xenograft: A Model System for the Detection of Tumor Markers
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 1542-1554
%V 7
%N 04
%U http://dx.doi.org/10.1021/pr7008516

%A Ozlem Onder
%A Serdar Turkarslan
%A David Sun
%A Fevzi Daldal
%T Overproduction or Absence of the Periplasmic Protease DegP Severely Compromises Bacterial Growth in the Absence of the Dithiol: Disulfide Oxidoreductase DsbA
%0 Journal Article
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%J Mol Cell Proteomics
%P 875-890
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%N 5
%U http://www.mcponline.org/cgi/content/abstract/7/5/875?etoc

%A Verano-Braga T
%A Rocha-Resende C
%A Silva DM
%A Ianzer D
%A Martin-Eauclaire MF
%A Bougis PE
%A de Lima ME
%A Santos RA
%A Pimenta AM
%T Tityus serrulatus Hypotensins: A new family of peptides from scorpion venom
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%J Biochem Biophys Res Commun
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%8 Apr 26, 2008

%A Medzihradszky KF
%T Characterization of Site-specific N-Glycosylation
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%J Methods Mol Biol
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%A Josic D
%A Clifton JG
%A Kovac S
%A Hixson DC
%T Membrane proteins as diagnostic biomarkers and targets for new therapies
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%J Curr Opin Mol Ther
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%A Gilany K
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%A Mous K
%A Coen E
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%A Van Damme S
%A Gevaert K
%A Timmerman E
%A Vandekerckhove J
%A Dewilde S
%A Van Ostade X
%A Moens L
%T The proteome of the human neuroblastoma cell line SH-SY5Y: An enlarged proteome
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%8 Mar 19, 2008

%A Deutsch EW
%A Lam H
%A Aebersold R
%T PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows
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%J EMBO Rep
%P 429-34
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%A Dean E. McNulty and Roland S. Annan
%T Hydrophilic Interaction Chromatography Reduces the Complexity of the Phosphoproteome and Improves Global Phosphopeptide Isolation and Detection
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%J Mol Cell Proteomics
%P 971-980
%V 7
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%U http://www.mcponline.org/cgi/content/abstract/7/5/971?etoc

%A Baerenfaller K
%A Grossmann J
%A Grobei MA
%A Hull R
%A Hirsch-Hoffmann M
%A Yalovsky S
%A Zimmermann P
%A Grossniklaus U
%A Gruissem W
%A Baginsky S
%T Genome-Scale Proteomics Reveals Arabidopsis thaliana Gene Models and Proteome Dynamics
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%J Science
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%8 2008 Apr 24

%A Morten B. Trelle and Ole N. Jensen
%T Utility of Immonium Ions for Assignment of -N-Acetyllysine-Containing Peptides by Tandem Mass Spectrometry
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 3422-3430
%V 80
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%U http://dx.doi.org/10.1021/ac800005n

%A Yang Y
%A Liu S
%A Qin Z
%A Cui Y
%A Qin Y
%A Bai S
%T Alteration of cystatin C levels in cerebrospinal fluid of patients with Guillain-Barré Syndrome by a proteomical approach
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%J Mol Biol Rep
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%8 Mar 29, 2008

%A Li X
%A Tang S
%A Huang H
%A Yang L
%A Liu J
%A Zhuang Z
%T Induction of a cell-survival adaptive response in MRC-5 cells by hydroquinone
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%J Mutat Res
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%8 Mar 10, 2008

%A Ajay Matta
%A Leroi V. DeSouza
%A Nootan Kumar Shukla
%A Siddhartha D. Gupta
%A Ranju Ralhan
%A K. W. Michael Siu
%T Prognostic Significance of Head-and-Neck Cancer Biomarkers Previously Discovered and Identified Using iTRAQ-Labeling and Multidimensional Liquid Chromatography−Tandem Mass Spectrometry
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 2078-2087
%V 7
%N 05
%U http://dx.doi.org/10.1021/pr7007797

%A Kochanek PM
%A Berger RP
%A Bayr H
%A Wagner AK
%A Jenkins LW
%A Clark RS
%T Biomarkers of primary and evolving damage in traumatic and ischemic brain injury: diagnosis, prognosis, probing mechanisms, and therapeutic decision making
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%J Curr Opin Crit Care
%P 135-141
%V 14
%N 2
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18388674&dopt=Abstract

%A Jonathan C. Trinidad
%A Agnes Thalhammer
%A Christian G. Specht
%A Aenoch J.Lynn
%A Peter R. Baker
%A Ralf Schoepfer
%A Alma L. Burlingame
%T Quantitative Analysis of Synaptic Phosphorylation and Protein Expression
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 684-696
%V 7
%N 4
%U http://www.mcponline.org/cgi/content/abstract/7/4/684?etoc

%A Ki Hun Kim
%A Dukjin Kang
%A Hyun Min Koo
%A Myeong Hee Moon
%T Molecular mass sorting of proteome using hollow fiber flow field-flow fractionation for proteomics
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%J Journal of Proteomics
%P 123-131
%V 71
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%U http://www.sciencedirect.com/science/article/B8JDC-4RTM37J-1/1/a21a2d67b1c63af5fceaafd0f35d69aa

%A Lefranc MP
%T IMGT, the international ImMunoGeneTics information system for Immunoinformatics. Methods for querying IMGT databases, tools, and Web resources in the context of immunoinformatics
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%A Alexander Benjamin
%A Moses Kashem
%A Camille Cohen
%A Jennifer A. Caldwell Busby
%A Delanthi Salgado-Commissariat
%A Santosh A. Helekar
%A Sanjoy K. Bhattacharya
%T Proteomics of the Nucleus Ovoidalis and Field L Brain Regions of Zebra Finch
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 2121-2132
%V 7
%N 05
%U http://dx.doi.org/10.1021/pr7008687

%A M. Galesio
%A D. V. Vieira
%A R. Rial-Otero
%A C. Lodeiro
%A I. Moura
%A J. L. Capelo
%T Influence of the Protein Staining in the Fast Ultrasonic Sample Treatment for Protein Identification through Peptide Mass Fingerprint and Matrix-Assisted Laser Desorption Ionization Time of Flight Mass Spectrometry
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 2097-2106
%V 7
%N 05
%U http://dx.doi.org/10.1021/pr700850w

%A Kyung-Yeon Han
%A Jin-Seung Park
%A Hyuk-Seong Seo
%A Keum-Young Ahn
%A Jeewon Lee
%T Multiple Stressor-Induced Proteome Responses of Escherichia coli BL21(DE3)
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 1891-1903
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%U http://dx.doi.org/10.1021/pr700631c

%A M.J. Dunn
%A C. Gil
%A C. Kleinhammer
%A F. Lottspeich
%A S. Pennington
%A J.-Ch. Sanchez
%A J.P. Albar
%A L. Bini
%A F. Corrales
%A G.L. Corthals
%A M.M. Fountoulakis
%A C. Hoogland
%A P. James
%A O.N. Jensen
%A C. Jiménez
%A J. Jorrín-Novo
%A H.-J. Kraus
%A H. Meyer
%A D. Noukakis
%A P.M. P
%T EuPA achieves visibility -- An activity report on the first three years
%0 Journal Article
%D 2008
%J Journal of Proteomics
%P 11-18
%V 71
%N 1
%U http://www.sciencedirect.com/science/article/B8JDC-4S7J63V-1/1/decf39362feefea9fa209dab8970e3ae

%A Schaub S
%A Wilkins JA
%A Nickerson P
%T Proteomics and renal transplantation: searching for novel biomarkers and therapeutic targets
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%J Contrib Nephrol
%P 65-75
%V 160
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%A Miyasaka T
%A Morita M
%A Ito K
%A Suzuki T
%A Fukuda H
%A Takeda S
%A Inoue J
%A Semba K
%A Yamamoto T
%T Interaction of antiproliferative protein Tob with the CCR4-NOT deadenylase complex
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%J Cancer Sci
%P 755-61
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%A Holmes MR
%A Giddings MC
%T Using GFS to identify encoding genomic loci from protein mass spectral data
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%A Arsene CG
%A Ohlendorf R
%A Burkitt W
%A Pritchard C
%A Henrion A
%A O'Connor G
%A Bunk DM
%A Güttler B
%T Protein Quantification by Isotope Dilution Mass Spectrometry of Proteolytic Fragments: Cleavage Rate and Accuracy
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%J Anal Chem
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%8 Apr 30, 2008

%A Markus Brosch
%A Sajani Swamy
%A Tim Hubbard
%A Jyoti Choudhary
%T Comparison of Mascot and X!Tandem Performance for Low and High Accuracy Mass Spectrometry and the Development of an Adjusted Mascot Threshold
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 962-970
%V 7
%N 5
%U http://www.mcponline.org/cgi/content/abstract/7/5/962?etoc

%A Lindsay D. Rogers
%A Anders R. Kristensen
%A Erin C. Boyle
%A Dale P. Robinson
%A Richard T. Ly
%A B. Brett Finlay
%A Leonard J. Foster
%T Identification of cognate host targets and specific ubiquitylation sites on the Salmonella SPI-1 effector SopB/SigD
%0 Journal Article
%D 2008
%J Journal of Proteomics
%P 97-108
%V 71
%N 1
%U http://www.sciencedirect.com/science/article/B8JDC-4RS43TH-1/1/4e31b44b1f0ee9d5473a95e5dda4ee78

%A Grimsrud PA
%A Xie H
%A Griffin TJ
%A Bernlohr DA
%T Oxidative stress and covalent modification of protein with bioactive aldehydes
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%J J Biol Chem
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%8 Apr 29, 2008

%A Tsui-Chin Huang
%A Hsin-Yi Chang
%A Chun-Hua Hsu
%A Wen-Hung Kuo
%A King-Jen Chang
%A Hsueh-Fen Juan
%T Targeting Therapy for Breast Carcinoma by ATP Synthase Inhibitor Aurovertin B
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 1433-1444
%V 7
%N 04
%U http://dx.doi.org/10.1021/pr700742h

%A Anisa Elhamili
%A Magnus Wetterhall
%A Björn Arvidsson
%A Roberto Sebastiano
%A Pier Giorgio Righetti
%A Jonas Bergquist
%T Rapid capillary electrophoresis time-of-flight mass spectrometry separations of peptides and proteins using a monoquaternarized piperazine compound (M7C4I) for capillary coatings
%0 Journal Article
%D 2008
%J ELECTROPHORESIS
%P 1619-1625
%V 29
%N 8
%U http://dx.doi.org/10.1002/elps.200700737

%A Uriarte SM
%A Powell DW
%A Luerman GC
%A Merchant ML
%A Cummins TD
%A Jog NR
%A Ward RA
%A McLeish KR
%T Comparison of proteins expressed on secretory vesicle membranes and plasma membranes of human neutrophils
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%J J Immunol
%P 5575-81
%V 180
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%A Thongboonkerd V
%T Searching for Novel Biomarkers and NewTherapeutic Targets of Diabetic Nephropathy Using Proteomics Approaches
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%D 2008
%J Contrib Nephrol
%P 37-52
%V 160
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%A Hirabayashi J
%T Concept, strategy and realization of lectin-based glycan profiling
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%J J Biochem
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%8 Apr 4, 2008

%A Tine E. Thingholm
%A Ole N. Jensen
%A Phillip J. Robinson
%A Martin R. Larsen
%T SIMAC (Sequential Elution from IMAC), a Phosphoproteomics Strategy for the Rapid Separation of Monophosphorylated from Multiply Phosphorylated Peptides
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 661-671
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%U http://www.mcponline.org/cgi/content/abstract/7/4/661?etoc

%A Yang M
%A Lee HS
%A Pyo MY
%T Proteomic biomarkers for prenatal bisphenol A: Exposure in mouse immune organs
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%J Environ Mol Mutagen
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%8 Apr 16, 2008

%A Liu C
%A Chen Y
%A Yu X
%A Jin C
%A Xu J
%A Long J
%A Ni Q
%A Fu D
%A Jin H
%A Bai C
%T Proteomic analysis of differential proteins in pancreatic carcinomas: effects of MBD1 knock-down by stable RNA interference
%0 Journal Article
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%A Paul Denny
%A Fred K. Hagen
%A Markus Hardt
%A Lujian Liao
%A Weihong Yan
%A Martha Arellanno
%A Sara Bassilian
%A Gurrinder S. Bedi
%A Pinmannee Boontheung
%A Daniel Cociorva
%A Claire M. Delahunty
%A Trish Denny
%A Jason Dunsmore
%A Kym F. Faull
%A Joyce Gilligan
%A Mireya Gonzalez-
%T The Proteomes of Human Parotid and Submandibular/Sublingual Gland Salivas Collected as the Ductal Secretions
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 1994-2006
%V 7
%N 05
%U http://dx.doi.org/10.1021/pr700764j

%A Qibin Zhang
%A Ning Tang
%A Athena A. Schepmoes
%A Lawrence S. Phillips
%A Richard D. Smith
%A Thomas O. Metz
%T Proteomic Profiling of Nonenzymatically Glycated Proteins in Human Plasma and Erythrocyte Membranes
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 2025-2032
%V 7
%N 05
%U http://dx.doi.org/10.1021/pr700763r

%A Matthew L Cowan and Jaime Vera
%T Proteomics: Advances in Biomarker Discovery
%0 Journal Article
%D 2008
%J Expert Review of Proteomics
%P 21-23
%V 5
%N 1
%U http://dx.doi.org/10.1586/14789450.5.1.21

%A Cristian I. Ruse
%A Daniel B. McClatchy
%A Bingwen Lu
%A Daniel Cociorva
%A Akira Motoyama
%A Sung Kyu Park
%A John R. Yates III
%T Motif-Specific Sampling of Phosphoproteomes
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 2140-2150
%V 7
%N 05
%U http://dx.doi.org/10.1021/pr800147u

%A Guo Y
%A Yu L
%A Wen Z
%A Li M
%T Using support vector machine combined with auto covariance to predict protein-protein interactions from protein sequences
%0 Journal Article
%D 2008
%J Nucleic Acids Res
%P -
%V 
%N 
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18390576&dopt=Abstract
%8 Apr 4, 2008

%A Becker M
%A Nothwang HG
%A Friauf E
%T Different protein profiles in inferior colliculus and cerebellum: A comparative proteomic study
%0 Journal Article
%D 2008
%J Neuroscience
%P -
%V 
%N 
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18400408&dopt=Abstract
%8 Feb 20, 2008

%A Gamblin DP
%A van Kasteren SI
%A Chalker JM
%A Davis BG
%T Chemical approaches to mapping the function of post-translational modifications
%0 Journal Article
%D 2008
%J FEBS J
%P -
%V 
%N 
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18384382&dopt=Abstract
%8 Apr 1, 2008

%A Evi Croes
%A Kurt Gebruers
%A Johan Robben
%A Jean-Paul Noben
%A Bart Samyn
%A Griet Debyser
%A Jozef Van Beeumen
%A Jan A. Delcour
%A Christophe M. Courtin
%T Variability of polymorphic families of three types of xylanase inhibitors in the wheat grain proteome
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 1692-1705
%V 8
%N 8
%U http://dx.doi.org/10.1002/pmic.200700813

%A Craven RA
%A Banks RE
%T Understanding and managing renal cell carcinoma: can proteomic studies contribute to clinical practice?
%0 Journal Article
%D 2008
%J Contrib Nephrol
%P 88-106
%V 160
%N 
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18401164&dopt=Abstract

%A Lifeng Peng
%A Pisana Rawson
%A Danyl McLauchlan
%A Klaus Lehnert
%A Russell Snell
%A T. William Jordan
%T Proteomic Analysis of Microsomes from Lactating Bovine Mammary Gland
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 1427-1432
%V 7
%N 04
%U http://dx.doi.org/10.1021/pr700819b

%A Chan CM
%A Wong SC
%A Lam MY
%A Hui EP
%A Chan JK
%A Lo ES
%A Cheuk W
%A Wong MC
%A Tsao SW
%A Chan AT
%T Proteomic Comparison of Nasopharyngeal Cancer Cell Lines C666-1 and NP69 Identifies Down-Regulation of Annexin II and beta(2)-Tubulin for Nasopharyngeal Carcinoma
%0 Journal Article
%D 2008
%J Arch Pathol Lab Med
%P 675-83
%V 132
%N 4
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18384219&dopt=Abstract

%A Lustgarten JL
%A Kimmel C
%A Ryberg H
%A Hogan W
%T EPO-KB: A searchable knowledge base of biomarker to protein links
%0 Journal Article
%D 2008
%J Bioinformatics
%P -
%V 
%N 
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18400772&dopt=Abstract
%8 Apr 9, 2008

%A Chi Chun Wong
%A Ying Wang
%A Ka-Wing Cheng
%A Jen-Fu Chiu
%A Qing-Yu He
%A Feng Chen
%T Comparative Proteomic Analysis of Indioside D-Triggered Cell Death in HeLa Cells
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 2050-2058
%V 7
%N 05
%U http://dx.doi.org/10.1021/pr800019k

%A Hanash SM
%A Pitteri SJ
%A Faca VM
%T Mining the plasma proteome for cancer biomarkers
%0 Journal Article
%D 2008
%J Nature
%P 571-9
%V 452
%N 7187
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18385731&dopt=Abstract

%A Motani K
%A Tabata K
%A Kimura Y
%A Okano S
%A Shibata Y
%A Abiko Y
%A Nagai H
%A Akihisa T
%A Suzuki T
%T Proteomic Analysis of Apoptosis Induced by Xanthoangelol, a Major Constituent of Angelica keiskei, in Neuroblastoma
%0 Journal Article
%D 2008
%J Biol Pharm Bull
%P 618-26
%V 31
%N 4
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18379052&dopt=Abstract

%A van Kampen JJ
%A Burgers PC
%A de Groot R
%A Osterhaus AD
%A Reedijk ML
%A Verschuren EJ
%A Gruters RA
%A Luider TM
%T Quantitative Analysis of HIV-1 Protease Inhibitors in Cell Lysates Using MALDI-FTICR Mass Spectrometry
%0 Journal Article
%D 2008
%J Anal Chem
%P -
%V 
%N 
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18393531&dopt=Abstract
%8 Apr 8, 2008

%A Hongling Han
%A Yu Xia
%A Min Yang
%A Scott A. McLuckey
%T Rapidly Alternating Transmission Mode Electron-Transfer Dissociation and Collisional Activation for the Characterization of Polypeptide Ions
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 3492-3497
%V 80
%N 9
%U http://dx.doi.org/10.1021/ac7022734

%A Yinghua Qiu
%A Tasneem H. Patwa
%A Li Xu
%A Kerby Shedden
%A David E. Misek
%A Missy Tuck
%A Gracie Jin
%A Mack T. Ruffin
%A Danielle K. Turgeon
%A Sapna Synal
%A Robert Bresalier
%A Norman Marcon
%A Dean E. Brenner
%A David M. Lubman
%T Plasma Glycoprotein Profiling for Colorectal Cancer Biomarker Identification by Lectin Glycoarray and Lectin Blot
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 1693-1703
%V 7
%N 04
%U http://dx.doi.org/10.1021/pr700706s

%A Alessio Ceroni
%A Kai Maass
%A Hildegard Geyer
%A Rudolf Geyer
%A Anne Dell
%A Stuart M. Haslam
%T GlycoWorkbench: A Tool for the Computer-Assisted Annotation of Mass Spectra of Glycans
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 1650-1659
%V 7
%N 04
%U http://dx.doi.org/10.1021/pr7008252

%A Chongle Pan
%A Yasuhiro Oda
%A Patricia K. Lankford
%A Bing Zhang
%A Nagiza F. Samatova
%A Dale A. Pelletier
%A Caroline S. Harwood
%A Robert L. Hettich
%T Characterization of Anaerobic Catabolism of p-Coumarate in Rhodopseudomonas palustris by Integrating Transcriptomics and Quantitative Proteomics
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 938-948
%V 7
%N 5
%U http://www.mcponline.org/cgi/content/abstract/7/5/938?etoc

%A Michael J. Roth
%A Bryan A. Parks
%A Jonathan T. Ferguson
%A Michael T. Boyne II
%A Neil L. Kelleher
%T "Proteotyping": Population Proteomics of Human Leukocytes Using Top Down Mass Spectrometry
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 2857-2866
%V 80
%N 8
%U http://dx.doi.org/10.1021/ac800141g

%A Bidle KA
%A Kirkland PA
%A Nannen JL
%A Maupin-Furlow JA
%T Proteomic analysis of Haloferax volcanii reveals salinity-mediated regulation of the stress response protein PspA
%0 Journal Article
%D 2008
%J Microbiology
%P 1436-43
%V 154
%N Pt 5
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18451052&dopt=Abstract

%A Nicolas J. Hauser
%A Hongling Han
%A Scott A. McLuckey
%A Franco Basile
%T Electron Transfer Dissociation of Peptides Generated by Microwave D-Cleavage Digestion of Proteins
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 1867-1872
%V 7
%N 05
%U http://dx.doi.org/10.1021/pr700671z

%A Elena V. Romanova
%A Stanislav S. Rubakhin
%A Jonathan V. Sweedler
%T One-Step Sampling, Extraction, and Storage Protocol for Peptidomics Using Dihydroxybenzoic Acid
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 3379-3386
%V 80
%N 9
%U http://dx.doi.org/10.1021/ac7026047

%A Reddy CS
%A Holzgreve W
%A Hahn S
%T Detection of New Screening Markers for Fetal Aneuploidies in Maternal Plasma: A Proteomic Approach
%0 Journal Article
%D 2008
%J Methods Mol Biol
%P 311-326
%V 444
%N 
%U http://dx.doi.org/10.1007/978-1-59745-066-9_25

%A Basak SC
%A Gute BD
%T Mathematical biodescriptors of proteomics maps: Background and applications
%0 Journal Article
%D 2008
%J Curr Opin Drug Discov Devel
%P 320-6
%V 11
%N 3
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18428085&dopt=Abstract

%A Michael A. Ewing
%A Jane Wang
%A Sarah A. Sheeley
%A Jonathan V. Sweedler
%T Detecting D-Amino Acid-Containing Neuropeptides Using Selective Enzymatic Digestion
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 2874-2880
%V 80
%N 8
%U http://dx.doi.org/10.1021/ac7025173

%A Anastasia K. Yocum
%A Theresa E. Gratsch
%A Nancy Leff
%A John R. Strahler
%A Christie L. Hunter
%A Angela K. Walker
%A George Michailidis
%A Gilbert S. Omenn
%A K. Sue O'Shea
%A Philip C. Andrews
%T Coupled Global and Targeted Proteomics of Human Embryonic Stem Cells during Induced Differentiation
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 750-767
%V 7
%N 4
%U http://www.mcponline.org/cgi/content/abstract/7/4/750?etoc

%A Cao Xuan Hieu
%A Birgit Voigt
%A Dirk Albrecht
%A Dörte Becher
%A Thierry Lombardot
%A Frank Oliver Glöckner
%A Rudolf Amann
%A Michael Hecker
%A Thomas Schweder
%T Detailed proteome analysis of growing cells of the planctomycete Rhodopirellula baltica SH1T
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 1608-1623
%V 8
%N 8
%U http://dx.doi.org/10.1002/pmic.200701017