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%A Predrag Radivojac
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%A Matthew E. Mort
%A Matthew W. Hahn
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%T Gain and loss of phosphorylation sites in human cancer
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%A Elizabeth G. Hill
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%A Susana Comte-Walters
%A Elizabeth H. Slate
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%T A Statistical Model for iTRAQ Data Analysis
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%P 3091-3101
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%A Bachi A
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%T Quantitative proteomics as a new piece of the systems biology puzzle
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%A Tiago T. Selao
%A Stefan Nordlund
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%T Comparative Proteomic Studies in Rhodospirillum rubrum Grown under Different Nitrogen Conditions
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%U http://dx.doi.org/10.1021/pr700771u

%A Krisztián Papp
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%A Anna Erdei
%A József Prechl
%T Two-dimensional immune profiles improve antigen microarray-based characterization of humoral immunity
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%J PROTEOMICS
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%A Lis M
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%T Proteomic and metabolic characterization of a Candida albicans mutant resistant to the antimicrobial peptide MUC7 12-mer
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%A Suter B
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%T Two-hybrid technologies in proteomics research
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%T Proteomic profiling of cellular targets of lipopolysaccharide-induced signalling in Nicotiana tabacum BY-2 cells
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%A Kulasingam V
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%T Tissue culture-based breast cancer biomarker discovery platform
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%A Peng Zou
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%A Yanbao Yu
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%A Xian Chen
%T Proteomic Dissection of Agonist-Specific TLR-Mediated Inflammatory Responses on Macrophages at Subcellular Resolution
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%T The actin propulsive machinery: The proteome of Listeria monocytogenes tails
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%A Gammerman A
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%T Clinical mass spectrometry proteomic diagnosis by conformal predictors
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%T Guidelines for reporting the use of mass spectrometry in proteomics
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%A C. Jayampath Seneviratne
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%A Yoshi Abiko
%A Lakshman P. Samaranayake
%T Candida albicans biofilm formation is associated with increased anti-oxidative capacities
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%A Boxem M
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%T A protein domain-based interactome network for C. elegans early embryogenesis
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%J Cell
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%A Hortin GL
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%T High-Abundance Polypeptides of the Human Plasma Proteome Comprising the Top 4 Logs of Polypeptide Abundance
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%J Clin Chem
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%A Vengatesen Thiyagarajan
%A Pei-Yuan Qian
%T Proteomic analysis of larvae during development, attachment, and metamorphosis in the fouling barnacle, Balanus amphitrite
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%J PROTEOMICS
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%A Lin J
%A Liu Q
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%A Wei D
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%T Application of comparative proteome analysis to reveal influence of cultivation conditions on asymmetric bioreduction of beta-keto ester by Saccharomyces cerevisiae
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%8 Aug 5, 2008

%A Yaniv Loewenstein and Michal Linial
%T Connect the dots: exposing hidden protein family connections from the entire sequence tree
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%J Bioinformatics
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%A Malatesta M
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%A Annovi G
%A Baldelli B
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%A Biggiogera M
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%T A long-term study on female mice fed on a genetically modified soybean: effects on liver ageing
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%A Feng X
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%A Luo Q
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%T Mass spectrometry in systems biology: An overview
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%A Sebastian Bocker and Florian Rasche
%T Towards de novo identification of metabolites by analyzing tandem mass spectra
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%J Bioinformatics
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%A Ali R. Vaezzadeh
%A Jovan Simicevic
%A Alexis Chauvet
%A Patrice François
%A Catherine G. Zimmermann-Ivol
%A Pierre Lescuyer
%A Jacques P. M. Deshusses
%A Denis F. Hochstrasser
%T Imaging mass spectrometry using peptide isoelectric focusing
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%U http://dx.doi.org/10.1002/rcm.3658

%A Higa LM
%A Caruso MB
%A Canellas F
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%A Oliveira-Carvalho AL
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%A Zingali RB
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%T Secretome of HepG2 cells infected with dengue virus: Implications for pathogenesis
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%A Yao Y
%A Wu WY
%A Guan SH
%A Jiang BH
%A Yang M
%A Chen XH
%A Bi KS
%A Liu X
%A Guo DA
%T Proteomic analysis of differential protein expression in rat platelets treated with notoginsengnosides
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%8 Aug 13, 2008

%A Kazuhisa Ota
%A Keiji Kito
%A Shun-ichiro Iemura
%A Tohru Natsume
%A Takashi Ito
%T A parallel affinity purification method for selective isolation of polyubiquitinated proteins
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%D 2008
%J PROTEOMICS
%P 3004-3007
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%U http://dx.doi.org/10.1002/pmic.200800271

%A Bao-Shiang Lee
%A G. D. Lasanthi P. Jayathilaka
%A Jin-Sheng Huang
%A David Decresce
%A Jeffrey A. Borgia
%A Xiaofeng Zhou
%A Shalini Gupta
%T Modification of the immobilized metal affinity electrophoresis using sodium dodecyl sulfate polyacrylamide gel electrophoresis
%0 Journal Article
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%J ELECTROPHORESIS
%P 3160-3163
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%U http://dx.doi.org/10.1002/elps.200800024

%A Kentaro Miyamoto
%A Hidetaka Sakurai
%A Takeyuki Sugiura
%T Proteomic identification of a PSF/p54nrb heterodimer as RNF43 oncoprotein-interacting proteins
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 2907-2910
%V 8
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%U http://dx.doi.org/10.1002/pmic.200800083

%A Pao-Chi Liao
%A Andrew H.-J. Wang
%A Shui-Tein Chen
%T Taiwan Proteomics Society: An Organization Affiliated with HUPO
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%J Mol Cell Proteomics
%P 1584-1585
%V 7
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%U http://www.mcponline.org/cgi/content/full/7/8/1584?etoc

%A Takashi Ishida and Kengo Kinoshita
%T Prediction of disordered regions in proteins based on the meta approach
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%J Bioinformatics
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%A Ambort D
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%A Lottaz D
%A Huguenin M
%A Oneda B
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%T A novel 2D-based approach to the discovery of candidate substrates for the metalloendopeptidase meprin
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%A Wu XF
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%A Yue WF
%A Roy B
%A Li GL
%A Liu JM
%A Zhong BX
%A Gao QK
%A David WC
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%T Proteomic identification of the silkworm (Bombyx mori L) prothoracic glands during the fifth instar stage
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%J Biosci Rep
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%A Guimond J
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%T Identification of Streptomyces lividans proteins secreted by the twin-arginine translocation pathway following growth with different carbon sources
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%A Ravalason H
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%A Pollet B
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%A Grisel S
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%A Asther M
%A Herpoël-Gimbert I
%T Secretome analysis of Phanerochaete chrysosporium strain CIRM-BRFM41 grown on softwood
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%J Appl Microbiol Biotechnol
%P 719-33
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%U http://dx.doi.org/10.1007/s00253-008-1596-x

%A Zhengping Yi
%A Benjamin P. Bowen
%A Hyonson Hwang
%A Christopher P. Jenkinson
%A Dawn K. Coletta
%A Natalie Lefort
%A Mandeep Bajaj
%A Sangeeta Kashyap
%A Rachele Berria
%A Elena A. De Filippis
%A Lawrence J. Mandarino
%T Global Relationship between the Proteome and Transcriptome of Human Skeletal Muscle
%0 Journal Article
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%J JOURNAL OF PROTEOME RESEARCH
%P 3230-3241
%V 7
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%U http://dx.doi.org/10.1021/pr800064s

%A Soheil Pourshahian
%A Patrick A. Limbach
%T Application of fractional mass for the identification of peptide-oligonucleotide cross-links by mass spectrometry
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%J Journal of Mass Spectrometry
%P 1081-1088
%V 43
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%U http://dx.doi.org/10.1002/jms.1391

%A Fortis F
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%A Girot P
%A Fasoli E
%A Righetti PG
%A Boschetti E
%T A pI-based protein fractionation method using solid-state buffers
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%J J Proteomics
%P 379-89
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%U http://dx.doi.org/10.1016/j.jprot.2008.06.007

%A Wang Y
%A Liu T
%A Wu C
%A Li H
%T A Strategy for Direct Identification of Protein S-Nitrosylation Sites by Quadrupole Time-of-Flight Mass Spectrometry
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%J J Am Soc Mass Spectrom
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%8 Jun 20, 2008

%A Louis Ramaley
%A Lisandra Cubero Herrera
%T Software for the calculation of isotope patterns in tandem mass spectrometry
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%J Rapid Communications in Mass Spectrometry
%P 2707-2714
%V 22
%N 17
%U http://dx.doi.org/10.1002/rcm.3668

%A Susanne Wolff
%A Hannes Hahne
%A Michael Hecker
%A Dorte Becher
%T Complementary Analysis of the Vegetative Membrane Proteome of the Human Pathogen Staphylococcus aureus
%0 Journal Article
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%J Mol Cell Proteomics
%P 1460-1468
%V 7
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%U http://www.mcponline.org/cgi/content/abstract/7/8/1460?etoc

%A Hiroyuki Yano and Shigeru Kuroda
%T Introduction of the Disulfide Proteome: Application of a Technique for the Analysis of Plant Storage Proteins as Well as Allergens
%0 Journal Article
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%J JOURNAL OF PROTEOME RESEARCH
%P 3071-3079
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%U http://dx.doi.org/10.1021/pr8003453

%A Zhang Z
%A Chen J
%A Guo F
%A He L
%A Wu Y
%A Zeng C
%A Xiao X
%A He D
%T A high-temporal resolution technology for dynamic proteomic analysis based on 35S labeling
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%A Neuhaus T
%A Kemper MJ
%A Girardin E
%T Proteomic analysis of mononuclear cells of patients with minimal-change nephrotic syndrome of childhood
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%J Nephrol Dial Transplant
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%A Yi X
%A Maccoss MJ
%A Swanson WJ
%T Proteomics reveals novel Drosophila seminal fluid proteins transferred at mating
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%A Noboru Uchiyama
%A Atsushi Kuno
%A Hiroaki Tateno
%A Yoshiko Kubo
%A Mamoru Mizuno
%A Midori Noguchi
%A Jun Hirabayashi
%T Optimization of evanescent-field fluorescence-assisted lectin microarray for high-sensitivity detection of monovalent oligosaccharides and glycoproteins
%0 Journal Article
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%J PROTEOMICS
%P 3042-3050
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%U http://dx.doi.org/10.1002/pmic.200701114

%A Fung-Ming Siu
%A Dik-Lung Ma
%A Yee-Wai Cheung
%A Chun-Nam Lok
%A Kun Yan
%A Zhiqi Yang
%A Mengsu Yang
%A SongXiao Xu
%A Ben Chi-Bun Ko
%A Qing-Yu He
%A Chi-Ming Che
%T Proteomic and transcriptomic study on the action of a cytotoxic saponin (Polyphyllin D): Induction of endoplasmic reticulum stress and mitochondria-mediated apoptotic pathways
%0 Journal Article
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%J PROTEOMICS
%P 3105-3117
%V 8
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%U http://dx.doi.org/10.1002/pmic.200700829

%A Catherine L. Swaim
%A Brian P. Anton
%A Shamik S. Sharma
%A Christopher H. Taron
%A Jack S. Benner
%T Physical and computational analysis of the yeast Kluyveromyces lactis secreted proteome
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 2714-2723
%V 8
%N 13
%U http://dx.doi.org/10.1002/pmic.200700764

%A Pathogen Staphylococcus aureus
%T Complementary Analysis of the Vegetative Membrane Proteome of the Human
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 1460-1468
%V 7
%N 8
%U http://www.mcponline.org/cgi/content/abstract/7/8/1460?etoc

%A Alejandro C. Olivieri
%T Analytical Advantages of Multivariate Data Processing. One, Two, Three, Infinity?
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 5713-5720
%V 80
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%U http://dx.doi.org/10.1021/ac800692c

%A Perera R
%A Kuhn RJ
%T Structural proteomics of dengue virus
%0 Journal Article
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%J Curr Opin Microbiol
%P 369-77
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%U http://dx.doi.org/10.1016/j.mib.2008.06.004

%A Anthony Goncalves
%A Emmanuelle Charafe-Jauffret
%A Francois Bertucci
%A Stephane Audebert
%A Yves Toiron
%A Benjamin Esterni
%A Florence Monville
%A Carole Tarpin
%A Jocelyne Jacquemier
%A Gilles Houvenaeghel
%A Christian Chabannon
%A Jean-Marc Extra
%A Patrice Viens
%A Jean-Paul
%T Protein Profiling of Human Breast Tumor Cells Identifies Novel Biomarkers Associated with Molecular Subtypes
%0 Journal Article
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%J Mol Cell Proteomics
%P 1420-1433
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%U http://www.mcponline.org/cgi/content/abstract/7/8/1420?etoc

%A Hang Liu
%A Ronghua Shi
%A Wenming Wan
%A Runmiao Yang
%A Yanmei Wang
%T A well-defined diblock copolymer of poly-(ethylene oxide)-block-poly (4-vinylpyridine) for separation of basic proteins by capillary zone electrophoresis
%0 Journal Article
%D 2008
%J ELECTROPHORESIS
%P 2812-2819
%V 29
%N 13
%U http://dx.doi.org/10.1002/elps.200700691

%A Ying Wai Lam
%A Neville N. C. Tam
%A James E. Evans
%A Karin M. Green
%A Xiang Zhang
%A Shuk-Mei Ho
%T Differential proteomics in the aging Noble rat ventral prostate
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 2750-2763
%V 8
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%U http://dx.doi.org/10.1002/pmic.200700986

%A Giovanni Candiano
%A Maurizio Bruschi
%A Andrea Petretto
%A Laura Santucci
%A Piero Del Boccio
%A Andrea Urbani
%A Elisabetta Bertoni
%A Rosanna Gusmano
%A Maurizio Salvadori
%A Francesco Scolari
%A Gian Marco Ghiggeri
%T Proteins and protein fragments in nephrotic syndrome: Clusters, specificity and mechanisms
%0 Journal Article
%D 2008
%J PROTEOMICS - CLINICAL APPLICATIONS
%P 956-963
%V 2
%N 7-8
%U http://dx.doi.org/10.1002/prca.200780157

%A Weifeng Luo
%A Robbert J. Slebos
%A Salisha Hill
%A Ming Li
%A Jan Brábek
%A Ramars Amanchy
%A Raghothama Chaerkady
%A Akhilesh Pandey
%A Amy-Joan L. Ham
%A Steven K. Hanks
%T Global Impact of Oncogenic Src on a Phosphotyrosine Proteome
%0 Journal Article
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%J JOURNAL OF PROTEOME RESEARCH
%P 3447-3460
%V 7
%N 08
%U http://dx.doi.org/10.1021/pr800187n

%A Eiji Kinoshita
%A Emiko Kinoshita-Kikuta
%A Mamoru Matsubara
%A Seiji Yamada
%A Hiro Nakamura
%A Yoshitsugu Shiro
%A Yuri Aoki
%A Kouki Okita
%A Tohru Koike
%T Separation of phosphoprotein isotypes having the same number of phosphate groups using phosphate-affinity SDS-PAGE
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 2994-3003
%V 8
%N 15
%U http://dx.doi.org/10.1002/pmic.200800243

%A Olivier Filangi
%A Yoann Beausse
%A Anthony Assi
%A Ludovic Legrand
%A Jean-Marc Larre
%A Veronique Martin
%A Olivier Collin
%A Christophe Caron
%A Hugues Leroy
%A David Allouche
%T BioMAJ: a flexible framework for databanks synchronization and processing
%0 Journal Article
%D 2008
%J Bioinformatics
%P 1823-1825
%V 24
%N 16
%U http://dx.doi.org/10.1093/bioinformatics/btn325

%A Luczak M
%A Bugajewska A
%A Wojtaszek P
%T Inhibitors of protein glycosylation or secretion change the pattern of extracellular proteins in suspension-cultured cells of Arabidopsis thaliana
%0 Journal Article
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%J Plant Physiol Biochem
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%8 Jun 19, 2008

%A Ding YH
%A Hixson KK
%A Aklujkar MA
%A Lipton MS
%A Smith RD
%A Lovley DR
%A Mester T
%T Proteome of Geobacter sulfurreducens grown with Fe(III) oxide or Fe(III) citrate as the electron acceptor
%0 Journal Article
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%A Spiros D. Garbis
%A Stavros I. Tyritzis
%A Theodoros Roumeliotis
%A Panagiotis Zerefos
%A Eugenia G. Giannopoulou
%A Antonia Vlahou
%A Sophia Kossida
%A Jose Diaz
%A Stavros Vourekas
%A Constantin Tamvakopoulos
%A Kitty Pavlakis
%A Despina Sanoudou
%A Constantinos A. Constan
%T Search for Potential Markers for Prostate Cancer Diagnosis, Prognosis and Treatment in Clinical Tissue Specimens Using Amine-Specific Isobaric Tagging (iTRAQ) with Two-Dimensional Liquid Chromatography and Tandem Mass Spectrometry
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%J JOURNAL OF PROTEOME RESEARCH
%P 3146-3158
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%A Simó R
%A Higuera M
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%A Hernández C
%T Elevation of apolipoprotein A-I and apolipoprotein H levels in the vitreous fluid and overexpression in the retina of diabetic patients
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%A Hongfang Lu
%A Ying Yang
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%A Nadeeja Wijesekara
%A Michael B. Wheeler
%T The Identification of Potential Factors Associated with the Development of Type 2 Diabetes: A Quantitative Proteomics Approach
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%A Qiu J
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%T Comparative proteomics analysis reveals role of heat shock protein 60 in digoxin-induced toxicity in human endothelial cells
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%A Aera Lee
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%A Eun-Soo Lim
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%T Enrichment of phosphopeptides using bare magnetic particles
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%A Obolbek A. Turapov
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%A Andrew R. Bottrill
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%T Digestion of Native Proteins for Proteomics Using a Thermocycler
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%A Murray J
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%T Monitoring oxidative and nitrative modification of cellular proteins; a paradigm for identifying key disease related markers of oxidative stress
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%A Ji-Na Wang
%A Ying Zhou
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%T Prediction of Acute Cellular Renal Allograft Rejection by Urinary Metabolomics Using MALDI-FTMS
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%U http://dx.doi.org/10.1021/pr800092f

%A Yu Wang
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%T Biomarker Discovery in Clinical Proteomics: Strategies for Exposing Low Abundant Proteins
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%T Native protein nanolithography that can write, read and erase
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%A A. D. J. van Dijk
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%T Predicting sub-Golgi localization of type II membrane proteins
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%A Lin-Li Lv
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%T Clinical application of antibody microarray in chronic kidney disease: How far to go?
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%A Hendrik Schmidt
%A Christoph Gelhaus
%A Melanie Nebendahl
%A Marcus Lettau
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%A Dieter Kabelitz
%A Matthias Leippe
%A Ottmar Janssen
%T 2-D DIGE analyses of enriched secretory lysosomes reveal heterogeneous profiles of functionally relevant proteins in leukemic and activated human NK cells
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%T Immobilization of the first dimension in 2D blue native/SDS-PAGE allows the relative quantification of membrane proteomes
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%A Jochen M. Schwenk
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%T Antibody Suspension Bead Arrays within Serum Proteomics
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%T Proteome Analysis of Tea Pollen (Camellia sinensis) under Different Storage Conditions
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%A Phanstiel D
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%T Peptide and Protein Quantification Using iTRAQ with Electron Transfer Dissociation
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%A Ignazio Garaguso
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%T Matrix layer sample preparation: An improved MALDI-MS peptide analysis method for proteomic studies
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%A Kasper Rossing
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%A Peter Rossing
%A Joost P. Schanstra
%A Alex Wiseman
%A David M. Maahs
%T The urinary proteome in diabetes and diabetes-associated complications: New ways to assess disease progression and evaluate therapy
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%J PROTEOMICS - CLINICAL APPLICATIONS
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%U http://dx.doi.org/10.1002/prca.200780166

%A Chiasserini D
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%T CSF proteome analysis in multiple sclerosis patients by two-dimensional electrophoresis
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%A Upritchard HG
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%T Immunoproteomics to examine cystic fibrosis host interactions with extracellular Pseudomonas aeruginosa proteins
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%A Urban A. Kiernan
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%A Kemmons A. Tubbs
%A Randall W. Nelson
%T MS-based phenotypic characterization of a human blood protein from urinary waste products
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%U http://dx.doi.org/10.1002/prca.200780118

%A Oveland E
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%T Ligand-induced Flt3-downregulation modulates cell death associated proteins and enhances chemosensitivity to idarubicin in THP-1 acute myeloid leukemia cells
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%T Assessment of lectin and HILIC based enrichment protocols for characterization of serum glycoproteins by mass spectrometry
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%A Shi Q
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%T A proteomic study of s-nitrosylation in the rat cardiac proteins in vitro
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%A Andersen MR
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%T Current status of systems biology in Aspergilli
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%8 Jul 19, 2008

%A Xie L
%A Pandey R
%A Xu B
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%T Genomic and proteomic profiling of oxidative stress response in human diploid fibroblasts
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%A Shaw A
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%T Paliperidone as a mood stabilizer: A pre-frontal cortex synaptoneurosomal proteomics comparison with lithium and valproic acid after chronic treatment reveals similarities in protein expression
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%A Yan Gong
%A Nan Wang
%A Fang Wu
%A Carol E. Cass
%A Sambasivarao Damaraju
%A John R. Mackey
%A Liang Li
%T Proteome Profile of Human Breast Cancer Tissue Generated by LC−ESI−MS/MS Combined with Sequential Protein Precipitation and Solubilization
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%U http://dx.doi.org/10.1021/pr800229j

%A Pascal Maurice
%A Avais M. Daulat
%A Cedric Broussard
%A Julien Mozo
%A Guilhem Clary
%A Francoise Hotellier
%A Philippe Chafey
%A Jean-Luc Guillaume
%A Gilles Ferry
%A Jean A. Boutin
%A Philippe Delagrange
%A Luc Camoin
%A Ralf Jockers
%T A Generic Approach for the Purification of Signaling Complexes That Specifically Interact with the Carboxyl-terminal Domain of G Protein-coupled Receptors
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%J Mol Cell Proteomics
%P 1556-1569
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%A Aude Martinez
%A José A. Traverso
%A Benoît Valot
%A Myriam Ferro
%A Christelle Espagne
%A Geneviève Ephritikhine
%A Michel Zivy
%A Carmela Giglione
%A Thierry Meinnel
%T Extent of N-terminal modifications in cytosolic proteins from eukaryotes
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%J PROTEOMICS
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%U http://dx.doi.org/10.1002/pmic.200701191

%A Guo B
%A Liang X
%A Chung SY
%A Holbrook CC
%A Maleki SJ
%T Proteomic analysis of peanut seed storage proteins and genetic variation in a potential peanut allergen
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%A Pérez-Sánchez R
%A Valero ML
%A Ramajo-Hernández A
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%A Ramajo-Martín V
%A Oleaga A
%T A proteomic approach to the identification of tegumental proteins of male and female Schistosoma bovis worms
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%J Mol Biochem Parasitol
%P 112-23
%V 161
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%U http://dx.doi.org/10.1016/j.molbiopara.2008.06.011

%A Rutschow H
%A Ytterberg AJ
%A Friso G
%A Nilsson R
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%T Quantitative proteomics of a chloroplast SRP54 sorting mutant and its genetic interactions with CLPC1 in Arabidopsis thaliana
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%J Plant Physiol
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%U http://dx.doi.org/10.1104/pp.108.124545

%A Wang J
%A Zhang X
%A Ge X
%A Guo H
%A Xiong G
%A Zhu Y
%T Proteomic studies of early-stage and advanced ovarian cancer patients
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%8 Aug 12, 2008

%A Zhou Y
%A Fang L
%A Du D
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%A Feng X
%A Chen J
%A Zhang Z
%A Chen Z
%T Proteome identification of binding-partners interacting with cell polarity protein Par3 in Jurkat cells
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%P 729-39
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%A Omid Hekmat
%A Shouming He
%A R. Antony J. Warren
%A Stephen G. Withers
%T A Mechanism-Based ICAT Strategy for Comparing Relative Expression and Activity Levels of Glycosidases in Biological Systems
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%U http://dx.doi.org/10.1021/pr7008302

%A Rasheed S
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%A Lau A
%A Chan AS
%T HIV replication enhances production of free fatty acids, low density lipoproteins and many key proteins involved in lipid metabolism: a proteomics study
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%A Susan J. Duthie
%A Yiannis Mavrommatis
%A Gary Rucklidge
%A Martin Reid
%A Gary Duncan
%A Mary P. Moyer
%A Lynn P. Pirie
%A Charles S. Bestwick
%T The Response of Human Colonocytes to Folate Deficiency in Vitro: Functional and Proteomic Analyses
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%P 3254-3266
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%U http://dx.doi.org/10.1021/pr700751y

%A Lars Konermann
%A Xin Tong
%A Yan Pan
%T Protein structure and dynamics studied by mass spectrometry: H/D exchange, hydroxyl radical labeling, and related approaches
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%A Tian M
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%A Song G
%A Zong M
%A Zhou X
%A Chen Y
%A Han J
%T Proteomic analysis identifies MMP-9, DJ-1 and A1BG as overexpressed proteins in pancreatic juice from pancreatic ductal adenocarcinoma patients
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%A Heal WP
%A Wickramasinghe SR
%A Tate EW
%T Activity based chemical proteomics: profiling proteases as drug targets
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%A Yong-Qing Tong
%A Zhi-Jie Zhang
%A Bei Liu
%A Jian Huang
%A Hui Liu
%A Yan Liu
%A Feng-Jie Guo
%A Guo-Hua Zhou
%A Ping-Li Xie
%A Yue-Hui Li
%A Chao-Hu Zuo
%A Jin-Yue Hu
%A Guan-Cheng Li
%T Autoantibodies as potential biomarkers for nasopharyngeal carcinoma
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%J PROTEOMICS
%P 3185-3193
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%U http://dx.doi.org/10.1002/pmic.200700651

%A Boschetti E
%A Righetti PG
%T The ProteoMiner in the proteomic arena: A non-depleting tool for discovering low-abundance species
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%U http://dx.doi.org/10.1016/j.jprot.2008.05.002

%A Han X
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%A Yates JR 3rd
%T Mass spectrometry for proteomics
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%A Zhen EY
%A Brittain IJ
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%A Mitchell PG
%A Sumer EU
%A Karsdal MA
%A Duffin KL
%T Characterization of metalloprotease cleavage products of human articular cartilage
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%A Masanobu Chiku
%A Jin Nakamura
%A Akira Fujishima
%A Yasuaki Einaga
%T Conformational Change Detection in Nonmetal Proteins by Direct Electrochemical Oxidation Using Diamond Electrodes
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%P 5783-5787
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%U http://dx.doi.org/10.1021/ac800394n

%A Madera M
%A Mann B
%A Mechref Y
%A Novotny MV
%T Efficacy of glycoprotein enrichment by microscale lectin affinity chromatography
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%U http://dx.doi.org/10.1002/jssc.200800094

%A Fernando L. Palhano
%A Debora Foguel
%A George G. Lindsey
%A Patricia M.B. Fernandes
%T Changes in Transcription and Protein Profile Induced by High Hydrostatic Pressure Treatment in Micro-Organisms
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%J Current Proteomics
%P 138-145
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%A Kim MR
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%A Cho HD
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%T Sample preparation method for plasma membrane proteome analysis
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%A Dossat N
%A Pujol JL
%A Molinari N
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%T Serum proteomic profiling of lung cancer in high-risk groups and determination of clinical outcomes
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%A Glen L. Hortin
%A Denis Sviridov
%T Analysis of molecular forms of albumin in urine
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%J PROTEOMICS - CLINICAL APPLICATIONS
%P 950-955
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%U http://dx.doi.org/10.1002/prca.200780145

%A Bérénice A. Benayoun
%A Jana Auer
%A Sandrine Caburet
%A Reiner A. Veitia
%T The post-translational modification profile of the forkhead transcription factor FOXL2 suggests the existence of parallel processive/concerted modification pathways
%0 Journal Article
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%J PROTEOMICS
%P 3118-3123
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%U http://dx.doi.org/10.1002/pmic.200800084

%A Hongzhan H
%A Shukla HD
%A Cathy W
%A Satya S
%T Challenges and solutions in proteomics
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%A Hong M
%A Zhang X
%A Hu Y
%A Wang H
%A He W
%A Mei H
%A Yu J
%A Guo T
%A Song S
%T The potential biomarkers for thromboembolism detected by SELDI-TOF-MS
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%J Thromb Res
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%A Anton Poliakov
%A Paul Jardine
%A Peter E. Prevelige
%T Hydrogen/deuterium exchange on protein solutions containing nucleic acids: utility of protamine sulfate
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%J Rapid Communications in Mass Spectrometry
%P 2423-2428
%V 22
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%U http://dx.doi.org/10.1002/rcm.3627

%A Yufeng Shen
%A Kim K. Hixson
%A Nikola Tolić
%A David G. Camp
%A Samuel O. Purvine
%A Ronald J. Moore
%A Richard D. Smith
%T Mass Spectrometry Analysis of Proteome-Wide Proteolytic Post-Translational Degradation of Proteins
%0 Journal Article
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%J ANALYTICAL CHEMISTRY
%P 5819-5828
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%U http://dx.doi.org/10.1021/ac800077w

%A Matthias   Mann
%T Can Proteomics Retire the Western Blot?
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%J JOURNAL OF PROTEOME RESEARCH
%P 3065-3065
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%U http://dx.doi.org/10.1021/pr800463v

%A Wegener KM
%A Welsh EA
%A Thornton LE
%A Keren N
%A Jacobs JM
%A Hixson KK
%A Monroe ME
%A Camp DG 2nd
%A Smith RD
%A Pakrasi HB
%T High sensitivity proteomics assisted discovery of a novel operon involved in the assembly of photosystem II, a membrane protein complex
%0 Journal Article
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%J J Biol Chem
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%8 Aug 8, 2008

%A Song KH
%A Jung MK
%A Eum JH
%A Hwang IC
%A Han SS
%T Proteomic analysis of parasitized Plutella xylostella larvae plasma
%0 Journal Article
%D 2008
%J J Insect Physiol
%P -
%V 
%N 
%U http://dx.doi.org/10.1016/j.jinsphys.2008.06.010
%8 Jul 10, 2008

%A Yasuaki Kazuta
%A Jiro Adachi
%A Tomoaki Matsuura
%A Naoaki Ono
%A Hirotada Mori
%A Tetsuya Yomo
%T Comprehensive Analysis of the Effects of Escherichia coli ORFs on Protein Translation Reaction
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 1530-1540
%V 7
%N 8
%U http://www.mcponline.org/cgi/content/abstract/7/8/1530?etoc

%A Vladislav A. Petyuk
%A Wei-Jun Qian
%A Charlotte Hinault
%A Marina A. Gritsenko
%A Mudita Singhal
%A Matthew E. Monroe
%A David G. Camp II
%A Rohit N. Kulkarni
%A Richard D. Smith
%T Characterization of the Mouse Pancreatic Islet Proteome and Comparative Analysis with Other Mouse Tissues
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 3114-3126
%V 7
%N 08
%U http://dx.doi.org/10.1021/pr800205b

%A Kniemeyer O
%A Lessing F
%A Brakhage AA
%T Proteome analysis for pathogenicity and new diagnostic markers for Aspergillus fumigatus
%0 Journal Article
%D 2008
%J Med Mycol
%P -
%V 
%N 
%U http://dx.doi.org/10.1080/13693780802169138
%8 Jul 24, 2008

%A Mádi A
%A Mikkat S
%A Koy C
%A Ringel B
%A Thiesen HJ
%A Glocker MO
%T Mass spectrometric proteome analysis suggests anaerobic shift in metabolism of Dauer larvae of Caenorhabditis elegans
%0 Journal Article
%D 2008
%J Biochim Biophys Acta
%P -
%V 
%N 
%U http://dx.doi.org/10.1016/j.bbapap.2008.05.017
%8 Jun 14, 2008

%A Takako Furusawa
%A Randeep Rakwal
%A Hyung Wook Nam
%A Junko Shibato
%A Ganesh Kumar Agrawal
%A Yu Sam Kim
%A Yoko Ogawa
%A Yasukazu Yoshida
%A Yoshiaki Kouzuma
%A Yoshinori Masuo
%A Masami Yonekura
%T Comprehensive Royal Jelly (RJ) Proteomics Using One- and Two-Dimensional Proteomics Platforms Reveals Novel RJ Proteins and Potential Phospho/Glycoproteins
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 3194-3229
%V 7
%N 08
%U http://dx.doi.org/10.1021/pr800061j

%A Joshua J. Coon
%A Petra Zürbig
%A Mohammed Dakna
%A Anna F. Dominiczak
%A Stéphane Decramer
%A Danilo Fliser
%A Moritz Frommberger
%A Igor Golovko
%A David M. Good
%A Stefan Herget-Rosenthal
%A Joachim Jankowski
%A Bruce A. Julian
%A Markus Kellmann
%A Walter Kolch
%A Ziad Massy
%A Ja
%T CE-MS analysis of the human urinary proteome for biomarker discovery and disease diagnostics
%0 Journal Article
%D 2008
%J PROTEOMICS - CLINICAL APPLICATIONS
%P 964-973
%V 2
%N 7-8
%U http://dx.doi.org/10.1002/prca.200800024

%A De Petris L
%A Orre LM
%A Kanter L
%A Pernemalm M
%A Koyi H
%A Lewensohn R
%A Lehtiö J
%T Tumor expression of S100A6 correlates with survival of patients with stage I non-small-cell lung cancer
%0 Journal Article
%D 2008
%J Lung Cancer
%P -
%V 
%N 
%U http://dx.doi.org/10.1016/j.lungcan.2008.06.003
%8 Jul 10, 2008

%A Ronan Feighery
%A Patricia Maguire
%A Michael P. Ryan
%A Tara McMorrow
%T A proteomic approach to immune-mediated epithelial-mesenchymal transition
%0 Journal Article
%D 2008
%J PROTEOMICS - CLINICAL APPLICATIONS
%P 1110-1117
%V 2
%N 7-8
%U http://dx.doi.org/10.1002/prca.200780148

%A Grimaud F
%A Rogniaux H
%A James MG
%A Myers AM
%A Planchot V
%T Proteome and phosphoproteome analysis of starch granule-associated proteins from normal maize and mutants affected in starch biosynthesis
%0 Journal Article
%D 2008
%J J Exp Bot
%P 3395-406
%V 59
%N 12
%U http://dx.doi.org/10.1093/jxb/ern198

%A Marcela Ferella
%A Daniel Nilsson
%A Hamid Darban
%A Claudia Rodrigues
%A Esteban J. Bontempi
%A Roberto Docampo
%A Björn Andersson
%T Proteomics in Trypanosoma cruzi - localization of novel proteins to various organelles
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 2735-2749
%V 8
%N 13
%U http://dx.doi.org/10.1002/pmic.200700940

%A Ren Q
%A Ye S
%A Whiteheart SW
%T The platelet release reaction: just when you thought platelet secretion was simple
%0 Journal Article
%D 2008
%J Curr Opin Hematol
%P 537-41
%V 15
%N 5
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18695380&dopt=Abstract

%A Jung Hun Oh
%A Young Bun Kim
%A Prem Gurnani
%A Kevin P. Rosenblatt
%A Jean X. Gao
%T Biomarker selection and sample prediction for multi-category disease on MALDI-TOF data
%0 Journal Article
%D 2008
%J Bioinformatics
%P 1812-1818
%V 24
%N 16
%U http://dx.doi.org/10.1093/bioinformatics/btn316

%A Derek B. Oien
%A Xinkun Wang
%A Jackob Moskovitz
%T Genomic and Proteomic Analyses of the Methionine Sulfoxide Reductase A Knockout Mouse
%0 Journal Article
%D 2008
%J Current Proteomics
%P 96-103
%V 5
%N 2
%U http://www.ingentaconnect.com/content/ben/cp/2008/00000005/00000002/art00002 

%A Baek D
%A Villén J
%A Shin C
%A Camargo FD
%A Gygi SP
%A Bartel DP
%T The impact of microRNAs on protein output
%0 Journal Article
%D 2008
%J Nature
%P 64-71
%V 455
%N 7209
%U http://dx.doi.org/10.1038/nature07242

%A Miller I
%A Wait R
%A Sipos W
%A Gemeiner M
%T A proteomic reference map for pig serum proteins as a prerequisite for diagnostic applications
%0 Journal Article
%D 2008
%J Res Vet Sci
%P -
%V 
%N 
%U http://dx.doi.org/10.1016/j.rvsc.2008.05.018
%8 Jul 9, 2008

%A Louie B
%A Tarczy-Hornoch P
%A Higdon R
%A Kolker E
%T Validating Annotations for Uncharacterized Proteins in Shewanella oneidensis
%0 Journal Article
%D 2008
%J OMICS
%P -
%V 
%N 
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18687039&dopt=Abstract
%8 Aug 7, 2008

%A Alberto Alape-Girón
%A Libia Sanz
%A José Escolano
%A Marietta Flores-Díaz
%A Marvin Madrigal
%A Mahmood Sasa
%A Juan J. Calvete
%T Snake Venomics of the Lancehead Pitviper Bothrops asper: Geographic, Individual, and Ontogenetic Variations
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 3556-3571
%V 7
%N 08
%U http://dx.doi.org/10.1021/pr800332p

%A Deukwoo Kwon
%A Marina Vannucci
%A Joon Jin Song
%A Jaesik Jeong
%A Ruth M. Pfeiffer
%T A novel wavelet-based thresholding method for the pre-processing of mass spectrometry data that accounts for heterogeneous noise
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 3019-3029
%V 8
%N 15
%U http://dx.doi.org/10.1002/pmic.200701010

%A Virginie Dauriac
%A Stéphanie Descroix
%A Yong Chen
%A Gabriel Peltre
%A Hélène Sénéchal
%T Isoelectric focusing in an ordered micropillar array
%0 Journal Article
%D 2008
%J ELECTROPHORESIS
%P 2945-2952
%V 29
%N 14
%U http://dx.doi.org/10.1002/elps.200800052

%A Martins AS
%A Ordoñez JL
%A García-Sánchez A
%A Herrero D
%A Sevillano V
%A Osuna D
%A Mackintosh C
%A Caballero G
%A Otero AP
%A Poremba C
%A Madoz-Gúrpide J
%A de Alava E
%T A pivotal role for heat shock protein 90 in Ewing sarcoma resistance to anti-insulin-like growth factor 1 receptor treatment: in vitro and in vivo study
%0 Journal Article
%D 2008
%J Cancer Res
%P 6260-70
%V 68
%N 15
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18676850&dopt=Abstract

%A Justin M. Hettick
%A Brett J. Green
%A Amanda D. Buskirk
%A Michael L. Kashon
%A James E. Slaven
%A Erika Janotka
%A Francoise M. Blachere
%A Detlef Schmechel
%A Donald H. Beezhold
%T Discrimination of Penicillium isolates by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry fingerprinting
%0 Journal Article
%D 2008
%J Rapid Communications in Mass Spectrometry
%P 2555-2560
%V 22
%N 16
%U http://dx.doi.org/10.1002/rcm.3649

%A Miyara N
%A Shinzato M
%A Yamashiro Y
%A Iwamatsu A
%A Kariya K
%A Sawaguchi S
%T Proteomic analysis of rat retina in a steroid-induced ocular hypertension model: Potential vulnerability to oxidative stress
%0 Journal Article
%D 2008
%J Jpn J Ophthalmol
%P 84-90
%V 52
%N 2
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18626730&dopt=Abstract

%A Tozzoli R
%A Barzilai O
%A Ram M
%A Villalta D
%A Bizzaro N
%A Sherer Y
%A Shoenfeld Y
%T Infections and autoimmune thyroid diseases: Parallel detection of antibodies against pathogens with proteomic technology
%0 Journal Article
%D 2008
%J Autoimmun Rev
%P -
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%N 
%U http://dx.doi.org/10.1016/j.autrev.2008.07.013
%8 Aug 9, 2008

%A Skiba M
%A Mettenleiter TC
%A Karger A
%T Quantitative whole-cell proteome analysis of pseudorabies virus infected cells
%0 Journal Article
%D 2008
%J J Virol
%P -
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%N 
%U http://dx.doi.org/10.1128/JVI.00995-08
%8 Jul 23, 2008

%A Hemei Chen
%A Xiuqing Xu
%A Ning Yao
%A Chunhui Deng
%A Pengyuan Yang
%A Xiangmin Zhang
%T Facile synthesis of C8-functionalized magnetic silica microspheres for enrichment of low-concentration peptides for direct MALDI-TOF MS analysis
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 2778-2784
%V 8
%N 14
%U http://dx.doi.org/10.1002/pmic.200700892

%A Hiss JA
%A Resch E
%A Schreiner A
%A Meissner M
%A Starzinski-Powitz A
%A Schneider G
%T Domain organization of long signal peptides of single-pass integral membrane proteins reveals multiple functional capacity
%0 Journal Article
%D 
%J 
%P -
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%A Smalley DM
%A Ley K
%T Plasma-derived microparticles for biomarker discovery
%0 Journal Article
%D 2008
%J Clin Lab
%P 67-79
%V 54
%N 3-4
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18630736&dopt=Abstract

%A Maclean D
%A Burrell MA
%A Studholme DJ
%A Jones AM
%T PhosCalc: A tool for evaluating the sites of peptide phosphorylation from Mass Spectrometer data
%0 Journal Article
%D 
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%A Sven-Eric Schelhorn
%A Thomas Lengauer
%A Mario Albrecht
%T An integrative approach for predicting interactions of protein regions
%0 Journal Article
%D 2008
%J Bioinformatics
%P i35-i41
%V 24
%N 16
%U http://dx.doi.org/10.1093/bioinformatics/btn290

%A Mukut Sharma
%A Brian D. Halligan
%A Bassam T. Wakim
%A Virginia J. Savin
%A Eric P. Cohen
%A John E. Moulder
%T The urine proteome as a biomarker of radiation injury
%0 Journal Article
%D 2008
%J PROTEOMICS - CLINICAL APPLICATIONS
%P 1065-1086
%V 2
%N 7-8
%U http://dx.doi.org/10.1002/prca.200780153

%A Silvia Braconi Quintaje and Sandra Orchard
%T The Annotation of Both Human and Mouse Kinomes in UniProtKB/Swiss-Prot: One Small Step in Manual Annotation, One Giant Leap for Full Comprehension of Genomes
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 1409-1419
%V 7
%N 8
%U http://www.mcponline.org/cgi/content/abstract/7/8/1409?etoc

%A Kischel P
%A Guillonneau F
%A Dumont B
%A Bellahcène A
%A Stresing V
%A Clézardin P
%A De Pauw EA
%A Castronovo V
%T Cell membrane proteomic analysis identifies proteins differentially expressed in osteotropic human breast cancer cells
%0 Journal Article
%D 2008
%J Neoplasia
%P 1014-20
%V 10
%N 9
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18714363&dopt=Abstract

%A Duncan P. Brown
%T Efficient functional clustering of protein sequences using the Dirichlet process
%0 Journal Article
%D 2008
%J Bioinformatics
%P 1765-1771
%V 24
%N 16
%U http://dx.doi.org/10.1093/bioinformatics/btn244

%A Chaitanya Saxena
%A Eugene Zhen
%A Richard E. Higgs
%A John E. Hale
%T An Immuno-Chemo-Proteomics Method for Drug Target Deconvolution
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 3490-3497
%V 7
%N 08
%U http://dx.doi.org/10.1021/pr800222q

%A Leonie F. Waanders
%A Reinaldo Almeida
%A Simon Prosser
%A Jurgen Cox
%A Daniel Eikel
%A Mark H. Allen
%A Gary A. Schultz
%A Matthias Mann
%T A Novel Chromatographic Method Allows On-line Reanalysis of the Proteome
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 1452-1459
%V 7
%N 8
%U http://www.mcponline.org/cgi/content/abstract/7/8/1452?etoc

%A Plebani M
%A Pittoni M
%A Celadin M
%A Bernardi D
%A Mion MM
%T Recent advances in diagnostic technologies for autoimmune diseases
%0 Journal Article
%D 2008
%J Autoimmun Rev
%P -
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%U http://dx.doi.org/10.1016/j.autrev.2008.07.032
%8 Aug 15, 2008

%A Liebeke M
%A Pöther DC
%A van Duy N
%A Albrecht D
%A Becher D
%A Hochgräfe F
%A Lalk M
%A Hecker M
%A Antelmann H
%T Depletion of thiol-containing proteins in response to quinones in Bacillus subtilis
%0 Journal Article
%D 2008
%J Mol Microbiol
%P -
%V 
%N 
%U http://dx.doi.org/10.1111/j.1365-2958.2008.06382.x
%8 Jul 30, 2008

%A Pavel Gromov
%A José M. A. Moreira
%A Irina Gromova
%A Julio E. Celis
%T Proteomic strategies in bladder cancer: From tissue to fluid and back
%0 Journal Article
%D 2008
%J PROTEOMICS - CLINICAL APPLICATIONS
%P 974-988
%V 2
%N 7-8
%U http://dx.doi.org/10.1002/prca.200780163

%A Van Hoof D
%A Braam SR
%A Dormeyers W
%A Ward-van Oostwaard D
%A Heck AJ
%A Krijgsveld J
%A Mummery CL
%T Feeder-free Monolayer Cultures of Human Embryonic Stem Cells Express an Epithelial Plasma Membrane Protein Profile
%0 Journal Article
%D 2008
%J Stem Cells
%P -
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%N 
%U http://dx.doi.org/10.1634/stemcells.2008-0365
%8 Aug 14, 2008

%A Bogatkevich GS
%A Ludwicka-Bradley A
%A Singleton CB
%A Bethard JR
%A Silver RM
%T Proteomic analysis of CTGF-activated lung fibroblasts: identification of IQGAP1 as a key player in lung fibroblast migration
%0 Journal Article
%D 2008
%J Am J Physiol Lung Cell Mol Physiol
%P -
%V 
%N 
%U http://dx.doi.org/10.1152/ajplung.00530.2007
%8 Aug 1, 2008

%A Gelio Alves
%A Wells W. Wu
%A Guanghui Wang
%A Rong-Fong Shen
%A Yi-Kuo Yu
%T Enhancing Peptide Identification Confidence by Combining Search Methods
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 3102-3113
%V 7
%N 08
%U http://dx.doi.org/10.1021/pr700798h

%A Chang DW
%A Hayashi S
%A Gharib SA
%A Vaisar T
%A King ST
%A Tsuchiya M
%A Ruzinski JT
%A Park DR
%A Matute-Bello G
%A Wurfel MM
%A Bumgarner R
%A Heinecke JW
%A Martin TR
%T Proteomic Analysis of Sequential Lung Lavage Proteins during the Acute Respiratory Distress Syndrome
%0 Journal Article
%D 2008
%J Am J Respir Crit Care Med
%P -
%V 
%N 
%U http://dx.doi.org/10.1164/rccm.200712-1895OC
%8 Jul 24, 2008

%A Fu ZF
%A Li X
%A Dhingra V
%T Pathogenic rabies virus alters host protein expression in the central nervous system: implications for neuronal dysfunction
%0 Journal Article
%D 2008
%J Dev Biol (Basel)
%P 83-91
%V 131
%N 
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18634469&dopt=Abstract

%A van Breemen MJ
%A Aerts JM
%A Sprenger RR
%A Speijer D
%T Potential artefacts in proteome analysis of plasma of Gaucher patients due to protease abnormalities
%0 Journal Article
%D 2008
%J Clin Chim Acta
%P 26-32
%V 396
%N 1-2
%U http://dx.doi.org/10.1016/j.cca.2008.06.018

%A Daub H
%A Olsen JV
%A Bairlein M
%A Gnad F
%A Oppermann FS
%A Körner R
%A Greff Z
%A Kéri G
%A Stemmann O
%A Mann M
%T Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle
%0 Journal Article
%D 2008
%J Mol Cell
%P 438-48
%V 31
%N 3
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18691976&dopt=Abstract

%A Small Step in Manual Annotation
%A One Giant Leap for Full Comprehension of
%T The Annotation of Both Human and Mouse Kinomes in UniProtKB/Swiss-Prot: One
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 1409-1419
%V 7
%N 8
%U http://www.mcponline.org/cgi/content/abstract/7/8/1409?etoc

%A Type 2 Diabetes: A Quantitative Proteomics Approach
%T The Identification of Potential Factors Associated with the Development of
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 1434-1451
%V 7
%N 8
%U http://www.mcponline.org/cgi/content/abstract/7/8/1434?etoc

%A Junqueira M
%A Spirin V
%A Balbuena TS
%A Thomas H
%A Adzhubei I
%A Sunyaev S
%A Shevchenko A
%T Protein identification pipeline for the homology-driven proteomics
%0 Journal Article
%D 2008
%J J Proteomics
%P 346-56
%V 71
%N 3
%U http://dx.doi.org/10.1016/j.jprot.2008.07.003

%A Schaff JE
%A Mbeunkui F
%A Blackburn K
%A Bird DM
%A Goshe MB
%T SILIP: A novel stable isotope labeling method for in planta quantitative proteomic analysis
%0 Journal Article
%D 2008
%J Plant J
%P -
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%N 
%U http://dx.doi.org/10.1111/j.1365-313X.2008.03639.x
%8 Jul 28, 2008

%A Sopko R
%A Andrews BJ
%T Linking the kinome and phosphorylome--a comprehensive review of approaches to find kinase targets
%0 Journal Article
%D 2008
%J Mol Biosyst
%P 920-33
%V 4
%N 9
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18704230&dopt=Abstract

%A Bindukumar B
%A Schwartz S
%A Aalinkeel R
%A Mahajan S
%A Lieberman A
%A Chadha K
%T Proteomic profiling of the effect of prostate-specific antigen on prostate cancer cells
%0 Journal Article
%D 2008
%J Prostate
%P 1531-45
%V 68
%N 14
%U http://dx.doi.org/10.1002/pros.20811

%A Andreas Quandt
%A Patricia Hernandez
%A Alexandre Masselot
%A Celine Hernandez
%A Sergio Maffioletti
%A Cesare Pautasso
%A Ron D. Appel
%A Frederique Lisacek
%T swissPIT: a novel approach for pipelined analysis of mass spectrometry data
%0 Journal Article
%D 2008
%J Bioinformatics
%P 1416-1417
%V 24
%N 11
%U http://dx.doi.org/10.1093/bioinformatics/btn139

%A Bingwen Lu
%A Cristian I. Ruse
%A John R. Yates III
%T Colander: A Probability-Based Support Vector Machine Algorithm for Automatic Screening for CID Spectra of Phosphopeptides Prior to Database Search
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 3628-3634
%V 7
%N 08
%U http://dx.doi.org/10.1021/pr8001194

%A Sung Ung Kang
%A Karoline Fuchs
%A Werner Sieghart
%A Gert Lubec
%T Gel-Based Mass Spectrometric Analysis of Recombinant GABAA Receptor Subunits Representing Strongly Hydrophobic Transmembrane Proteins
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 3498-3506
%V 7
%N 08
%U http://dx.doi.org/10.1021/pr800236u

%A Talvas J
%A Obled A
%A Sayd T
%A Chambon C
%A Mordier S
%A Fafournoux P
%T Phospho-proteomic approach to identify new targets of leucine deprivation in muscle cells
%0 Journal Article
%D 2008
%J Anal Biochem
%P 148-50
%V 381
%N 1
%U http://dx.doi.org/10.1016/j.ab.2008.05.038

%A Annabelle Dupont
%A Maggy Chwastyniak
%A Olivia Beseme
%A Anne-Laure Guihot
%A Hervé Drobecq
%A Philippe Amouyel
%A Florence Pinet
%T Application of Saturation Dye 2D-DIGE Proteomics to Characterize Proteins Modulated by Oxidized Low Density Lipoprotein Treatment of Human Macrophages
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 3572-3582
%V 7
%N 08
%U http://dx.doi.org/10.1021/pr700683s

%A Gao M
%A Yu W
%A Zhang Y
%A Yan G
%A Deng C
%A Yang P
%A Zhang X
%T Integrated strong cation exchange/capillary reversed-phase liquid chromatography/on-target digestion coupled with mass spectrometry for identification of intact human liver tissue proteins
%0 Journal Article
%D 2008
%J Analyst
%P 1261-7
%V 133
%N 9
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18709205&dopt=Abstract

%A Sen-Yung Hsieh
%A Feng-Hui Zhuang
%A Yi-Ting Wu
%A Jen-Kun Chen
%A Yun-Lin Lee
%T Profiling the proteome dynamics during the cell cycle of human hepatoma cells
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 2872-2884
%V 8
%N 14
%U http://dx.doi.org/10.1002/pmic.200800196

%A Guan-Yuan Chen
%A Shu-Hui Chen
%A Chen-Hsiang Yu
%A Sheng-Yu Huang
%A Mei-Ling Tsai
%T Trypsin digest coupled with two-dimensional shotgun proteomics reveals the involvement of multiple signaling pathways in functional remodeling of late-gestation uteri in rats
%0 Journal Article
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%J PROTEOMICS
%P 3173-3184
%V 8
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%U http://dx.doi.org/10.1002/pmic.200701040

%A Eric Deutsch
%T mzML: A single, unifying data format for mass spectrometer output
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%P 2776-2777
%V 8
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%U http://dx.doi.org/10.1002/pmic.200890049

%A Stemke-Hale K
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%A Hung MC
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%A Valero V
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%A Mills GB
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%T An integrative genomic and proteomic analysis of PIK3CA, PTEN, and AKT mutations in breast cancer
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%J Cancer Res
%P 6084-91
%V 68
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%A Sangtae Kim
%A Nitin Gupta
%A Pavel A. Pevzner
%T Spectral Probabilities and Generating Functions of Tandem Mass Spectra: A Strike against Decoy Databases
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%J JOURNAL OF PROTEOME RESEARCH
%P 3354-3363
%V 7
%N 08
%U http://dx.doi.org/10.1021/pr8001244

%A Jun Hyoung Park
%A Sung-Min Park
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%A Kyung-Hyun Cho
%A Seung-Taek Lee
%T Cleavage and functional loss of human apolipoprotein E by digestion of matrix metalloproteinase-14
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 2926-2935
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%U http://dx.doi.org/10.1002/pmic.200700487

%A Tyson DR
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%T Proteomics of cancer of hormone-dependent tissues
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%J Adv Exp Med Biol
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%V 630
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%A Dale A. Pelletier
%A Gregory B. Hurst
%A Linda J. Foote
%A Patricia K. Lankford
%A Catherine K. McKeown
%A Tse-Yuan Lu
%A Denise D. Schmoyer
%A Manesh B. Shah
%A W. Judson Hervey IV
%A W. Hayes McDonald
%A Brian S. Hooker
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%T A General System for Studying Protein−Protein Interactions in Gram-Negative Bacteria
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%J JOURNAL OF PROTEOME RESEARCH
%P 3319-3328
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%N 08
%U http://dx.doi.org/10.1021/pr8001832

%A Sun G
%A Xu X
%A Wang Y
%A Shen X
%A Chen Z
%A Yang J
%T Mycoplasma pneumoniae infection induces reactive oxygen species and DNA damage in human lung carcinoma A549 cells
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%A Wei X
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%A Ling J
%A Liu L
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%A Xiao Y
%T Differentially Expressed Protein Profile of Human Dental Pulp Cells in the Early Process of Odontoblast-like Differentiation In Vitro
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%J J Endod
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%V 34
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%A Kelly W
%A Stumpf M
%T Protein-protein interactions: from global to local analyses
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%J Curr Opin Biotechnol
%P 396-403
%V 19
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%U http://dx.doi.org/10.1016/j.copbio.2008.06.010

%A Yawei Liu
%A Bing Dai
%A Changlin Mei
%A Yan Zhang
%A Xishan Xiong
%A Richard Sandford
%T Identification of phosphoproteins in kidney tissues from patients with autosomal dominant polycystic kidney disease
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%D 2008
%J PROTEOMICS - CLINICAL APPLICATIONS
%P 1153-1166
%V 2
%N 7-8
%U http://dx.doi.org/10.1002/prca.200780172

%A Jung-Il Chae
%A Kweon Yu
%A Seong-Keun Cho
%A Jin-Hoi Kim
%A Deog-Bon Koo
%A Kyung-Kwang Lee
%A Yong-Mahn Han
%T Aberrant expression of developmentally important signaling molecules in cloned porcine extraembryonic tissues
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%J PROTEOMICS
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%U http://dx.doi.org/10.1002/pmic.200701134

%A Mann K
%A Poustka AJ
%A Mann M
%T The sea urchin (Strongylocentrotus purpuratus) test and spine proteomes
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%A Magistrado P
%A Salanti A
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%A Mwakalinga SB
%A Resende M
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%T VAR2CSA Expression on the Surface of Placenta-Derived Plasmodium falciparum-Infected Erythrocytes
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%A Sebastian A. Potthoff
%A Barbara Sitek
%A Johannes Stegbauer
%A Thomas Schulenborg
%A Katrin Marcus
%A Ivo Quack
%A Lars C. Rump
%A Helmut E. Meyer
%A Kai Stühler
%A Oliver Vonend
%T The glomerular proteome in a model of chronic kidney disease
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%J PROTEOMICS - CLINICAL APPLICATIONS
%P 1127-1139
%V 2
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%U http://dx.doi.org/10.1002/prca.200800010

%A Lery LM
%A von Krüger WM
%A Viana FC
%A Teixeira KR
%A Bisch PM
%T A comparative proteomic analysis of Gluconacetobacter diazotrophicus PAL5 at exponential and stationary phases of cultures in the presence of high and low levels of inorganic nitrogen compound
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%J Biochim Biophys Acta
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%8 Jul 9, 2008

%A Shilan Wu
%A Mariel Birnbaumer
%A Ziqiang Guan
%T Phosphorylation Analysis of G Protein-Coupled Receptor by Mass Spectrometry: Identification of a Phosphorylation Site in V2 Vasopressin Receptor
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 6034-6037
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%U http://dx.doi.org/10.1021/ac8008548

%A Jayesh Pandey
%A Mehmet Koyuturk
%A Shankar Subramaniam
%A Ananth Grama
%T Functional coherence in domain interaction networks
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%D 2008
%J Bioinformatics
%P i28-i34
%V 24
%N 16
%U http://dx.doi.org/10.1093/bioinformatics/btn296

%A Hanna Eriksson
%A Johan Lengqvist
%A Joel Hedlund
%A Kristina Uhlén
%A Lukas M. Orre
%A Bengt Bjellqvist
%A Bengt Persson
%A Janne Lehtiö
%A Per-Johan Jakobsson
%T Quantitative membrane proteomics applying narrow range peptide isoelectric focusing for studies of small cell lung cancer resistance mechanisms
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 3008-3018
%V 8
%N 15
%U http://dx.doi.org/10.1002/pmic.200800174

%A Karen S. Kelly-Spratt
%A A. Erik Kasarda
%A Mark Igra
%A Christopher J. Kemp
%T A Mouse Model Repository for Cancer Biomarker Discovery
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%J JOURNAL OF PROTEOME RESEARCH
%P 3613-3618
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%U http://dx.doi.org/10.1021/pr800210b

%A Fang X
%A Zhang WW
%T Affinity separation and enrichment methods in proteomic analysis
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%J J Proteomics
%P 284-303
%V 71
%N 3
%U http://dx.doi.org/10.1016/j.jprot.2008.06.011

%A Negri AS
%A Prinsi B
%A Rossoni M
%A Failla O
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%A Cocucci M
%A Espen L
%T Proteome changes in the skin of the grape cultivar Barbera among different stages of ripening
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%A Eun-Jeong So
%A Hyun-Jung Kim
%A Chan-Wha Kim
%T Proteomic analysis of human proximal tubular cells exposed to high glucose concentrations
%0 Journal Article
%D 2008
%J PROTEOMICS - CLINICAL APPLICATIONS
%P 1118-1126
%V 2
%N 7-8
%U http://dx.doi.org/10.1002/prca.200780151

%A Lepedda AJ
%A Cigliano A
%A Cherchi GM
%A Spirito R
%A Maggioni M
%A Carta F
%A Turrini F
%A Edelstein C
%A Scanu AM
%A Formato M
%T A proteomic approach to differentiate histologically classified stable and unstable plaques from human carotid arteries
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%J Atherosclerosis
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%8 Jul 12, 2008

%A Jörg Mostertz
%A Falko Hochgräfe
%A Britta Jürgen
%A Thomas Schweder
%A Michael Hecker
%T The role of thioredoxin TrxA in Bacillus subtilis: A proteomics and transcriptomics approach
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%D 2008
%J PROTEOMICS
%P 2676-2690
%V 8
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%U http://dx.doi.org/10.1002/pmic.200701015

%A Binz PA
%A Barkovich R
%A Beavis RC
%A Creasy D
%A Horn DM
%A Julian RK Jr
%A Seymour SL
%A Taylor CF
%A Vandenbrouck Y
%T Guidelines for reporting the use of mass spectrometry informatics in proteomics
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%A Sundsten T
%A Ortsäter H
%T Proteomics in diabetes research
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%J Mol Cell Endocrinol
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%8 Jul 9, 2008

%A Huang HL
%A Cendan CM
%A Roza C
%A Okuse K
%A Cramer R
%A Timms JF
%A Wood JN
%T Proteomic profiling of neuromas reveals alterations in protein composition and local protein synthesis in hyper-excitable nerves
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%A Sukhanova A
%A Nabiev I
%T Fluorescent nanocrystal-encoded microbeads for multiplexed cancer imaging and diagnosis
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%J Crit Rev Oncol Hematol
%P 39-59
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%U http://dx.doi.org/10.1016/j.critrevonc.2008.05.006

%A Alon Savidor
%A Ryan S. Donahoo
%A Oscar Hurtado-Gonzales
%A Miriam L. Land
%A Manesh B. Shah
%A Kurt H. Lamour
%A W. Hayes McDonald
%T Cross-species Global Proteomics Reveals Conserved and Unique Processes in Phytophthora sojae and Phytophthora ramorum
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%J Mol Cell Proteomics
%P 1501-1516
%V 7
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%U http://www.mcponline.org/cgi/content/abstract/7/8/1501?etoc

%A Lidia Westers
%A Helga Westers
%A Geeske Zanen
%A Haike Antelmann
%A Michael Hecker
%A David Noone
%A Kevin M. Devine
%A Jan Maarten van Dijl
%A Wim J. Quax
%T Genetic or chemical protease inhibition causes significant changes in the Bacillus subtilis exoproteome
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 2704-2713
%V 8
%N 13
%U http://dx.doi.org/10.1002/pmic.200800009

%A Yazen Jmeian
%A Ziad El Rassi
%T Micro-high-performance liquid chromatography platform for the depletion of high-abundance proteins and subsequent on-line concentration/capturing of medium and low-abundance proteins from serum. Application to profiling of protein expression in healthy an
%0 Journal Article
%D 2008
%J ELECTROPHORESIS
%P 2801-2811
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%U http://dx.doi.org/10.1002/elps.200800039

%A Cabrera R
%A Zhelyazkova P
%A Galvis L
%A Fernandez-Lahore M
%T Tailoring orthogonal proteomic routines to understand protein separation during ion exchange chromatography
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%P 2500-2510
%V 31
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%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18646262&dopt=Abstract

%A Kullolli M
%A Hancock WS
%A Hincapie M
%T Preparation of a high-performance multi-lectin affinity chromatography (HP-M-LAC) adsorbent for the analysis of human plasma glycoproteins
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%P 2733-2739
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%A Emanuel Schwarz
%A Sabine Bahn
%T Biomarker discovery in psychiatric disorders
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%J ELECTROPHORESIS
%P 2884-2890
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%U http://dx.doi.org/10.1002/elps.200700710

%A Zinellu A
%A Sotgia S
%A Scanu B
%A Deiana L
%A Carru C
%T Determination of protein-incorporated methylated arginine reference values in healthy subjects whole blood and evaluation of factors affecting protein methylation
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%J Clin Biochem
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%8 Jul 30, 2008

%A Kipnis E
%A Hansen K
%A Sawa T
%A Moriyama K
%A Zurawel A
%A Ishizaka A
%A Wiener-Kronish J
%T Proteomic analysis of undiluted lung epithelial lining fluid
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%J Chest
%P 338-45
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%A Roth AD
%A Ivanova A
%A Colman DR
%T New observations on the compact myelin proteome
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%A Theptida Semangoen
%A Supachok Sinchaikul
%A Shui-Tein Chen
%A Visith Thongboonkerd
%T Proteomic analysis of altered proteins in distal renal tubular cells in response to calcium oxalate monohydrate crystal adhesion: Implications for kidney stone disease
%0 Journal Article
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%J PROTEOMICS - CLINICAL APPLICATIONS
%P 1099-1109
%V 2
%N 7-8
%U http://dx.doi.org/10.1002/prca.200780136

%A Re�hault-Godbert S
%A Gautron J
%A Labas V
%A Belghazi M
%A Nys Y
%T Identification and Characterization of the Precursor of Chicken Matrix Metalloprotease 2 (pro-MMP-2) in Hen Egg
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%J J Agric Food Chem
%P 6294-303
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%U http://dx.doi.org/10.1021/jf8003948

%A Krishnamoorthy S
%T Receptor tyrosine kinase (RTK) mediated tyrosine phosphor-proteome from Drosophila S2 (ErbB1) cells reveals novel signaling networks
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%A Xia D
%A Sanderson SJ
%A Jones AR
%A Prieto JH
%A Yates JR 3rd
%A Bromley E
%A Tomley FM
%A Lal K
%A Sinden RE
%A Brunk BP
%A Roos DS
%A Wastling JM
%T The proteome of Toxoplasma gondii: integration with the genome provides novel insights into gene expression and annotation
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%A Reintsch WE
%A Mandato CA
%T Deciphering animal development through proteomics: requirements and prospects
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%A Leroi V. DeSouza
%A Adrian M. Taylor
%A Wei Li
%A Marjorie S. Minkoff
%A Alexander D. Romaschin
%A Terence J. Colgan
%A K. W. Michael Siu
%T Multiple Reaction Monitoring of mTRAQ-Labeled Peptides Enables Absolute Quantification of Endogenous Levels of a Potential Cancer Marker in Cancerous and Normal Endometrial Tissues
%0 Journal Article
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%J JOURNAL OF PROTEOME RESEARCH
%P 3525-3534
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%U http://dx.doi.org/10.1021/pr800312m

%A Lukas Kall
%A John D. Storey
%A William Stafford Noble
%T Non-parametric estimation of posterior error probabilities associated with peptides identified by tandem mass spectrometry
%0 Journal Article
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%J Bioinformatics
%P i42-i48
%V 24
%N 16
%U http://dx.doi.org/10.1093/bioinformatics/btn294

%A Hans W. Hahn
%A Rania Bakry
%A Christian W. Huck
%A Matthias Rainer
%A Muhammad Najam-ul-Haq
%A Gunther K. Bonn
%T Current Advances in Antibody Immobilization on Different Surfaces and Beads
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%J Current Proteomics
%P 115-128
%V 5
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%U http://www.ingentaconnect.com/content/ben/cp/2008/00000005/00000002/art00004 

%A Suberbielle E
%A Gonzalez-Dunia D
%A Pont F
%T High reproducibility of two-dimensional liquid chromatography using pH-driven fractionation with a pressure-resistant electrode
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%J J Chromatogr B
%P 125-9
%V 871
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%U http://dx.doi.org/10.1016/j.jchromb.2008.06.043

%A Michael R. Bennett
%A Neelima Ravipati
%A Gary Ross
%A Mai T. Nguyen
%A Russel Hirsch
%A Robert H. Beekman III
%A Leon Rovner
%A Prasad Devarajan
%T Using proteomics to identify preprocedural risk factors for contrast induced nephropathy
%0 Journal Article
%D 2008
%J PROTEOMICS - CLINICAL APPLICATIONS
%P 1058-1064
%V 2
%N 7-8
%U http://dx.doi.org/10.1002/prca.200780141

%A Fengwei Tan
%A Lifang Lu
%A Yun Cai
%A Jinglan Wang
%A Yunfei Xie
%A Lin Wang
%A Yanhua Gong
%A Bing-e Xu
%A Jun Wu
%A Ying Luo
%A Boqin Qiang
%A Jiangang Yuan
%A Xiaoqing Sun
%A Xiaozhong Peng
%T Proteomic analysis of ubiquitinated proteins in normal hepatocyte cell line Chang liver cells
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 2885-2896
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%U http://dx.doi.org/10.1002/pmic.200700887

%A Robinson-Bennett BL
%A Deford J
%A Diaz-Arrastia C
%A Levine L
%A Wang HQ
%A Hannigan EV
%A Papaconstantinou J
%T Implications of tyrosine phosphoproteomics in cervical carcinogenesis
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%A Sheng Gu
%A Tianyi Wang
%A Xian Chen
%T Quantitative proteomic analysis of LPS-induced differential immune response associated with TLR4 Polymorphisms by multiplex amino acid coded mass tagging
%0 Journal Article
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%J PROTEOMICS
%P 3061-3070
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%U http://dx.doi.org/10.1002/pmic.200700715

%A Tran BQ
%A Loftheim H
%A Reubsaet L
%A Lundanes E
%A Greibrokk T
%T On-Line multitasking analytical proteomics: How to separate, reduce, alkylate and digest whole proteins in an on-Line multidimensional chromatography system coupled to MS
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%J J Sep Sci
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%8 Aug 15, 2008

%A Xianyin Lai
%A Robert L. Bacallao
%A Bonnie L. Blazer-Yost
%A David Hong
%A Stephen B. Mason
%A Frank A. Witzmann
%T Characterization of the renal cyst fluid proteome in autosomal dominant polycystic kidney disease (ADPKD) patients
%0 Journal Article
%D 2008
%J PROTEOMICS - CLINICAL APPLICATIONS
%P 1140-1152
%V 2
%N 7-8
%U http://dx.doi.org/10.1002/prca.200780140

%A Francesca Lavatelli
%A David H. Perlman
%A Brian Spencer
%A Tatiana Prokaeva
%A Mark E. McComb
%A Roger Theberge
%A Lawreen H. Connors
%A Vittorio Bellotti
%A David C. Seldin
%A Giampaolo Merlini
%A Martha Skinner
%A Catherine E. Costello
%T Amyloidogenic and Associated Proteins in Systemic Amyloidosis Proteome of Adipose Tissue
%0 Journal Article
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%J Mol Cell Proteomics
%P 1570-1583
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%U http://www.mcponline.org/cgi/content/abstract/7/8/1570?etoc

%A Vinzenz Lange
%A Johan A. Malmstrom
%A John Didion
%A Nichole L. King
%A Bjorn P. Johansson
%A Juliane Schafer
%A Jonathan Rameseder
%A Chee-Hong Wong
%A Eric W. Deutsch
%A Mi-Youn Brusniak
%A Peter Buhlmann
%A Lars Bjorck
%A Bruno Domon
%A Ruedi Aebersold
%T Targeted Quantitative Analysis of Streptococcus pyogenes Virulence Factors by Multiple Reaction Monitoring
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 1489-1500
%V 7
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%U http://www.mcponline.org/cgi/content/abstract/7/8/1489?etoc

%A Chin-Yu Lin
%A Chun-Hung Liu
%A Hui-Chiu Chang
%A Wei-Lung Tseng
%T Enrichment and separation of acidic and basic proteins using the centrifugal ultrafiltration followed by nanoparticle-filled capillary electrophoresis
%0 Journal Article
%D 2008
%J ELECTROPHORESIS
%P 3024-3031
%V 29
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%U http://dx.doi.org/10.1002/elps.200700879

%A Jordan MD
%A Stanley D
%A Marshall SD
%A De Silva D
%A Crowhurst RN
%A Gleave AP
%A Greenwood DR
%A Newcomb RD
%T Expressed sequence tags and proteomics of antennae from the tortricid moth, Epiphyas postvittana
%0 Journal Article
%D 2008
%J Insect Mol Biol
%P 361-73
%V 17
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%A Pierre Lescuyer
%A Agnès Pernin
%A Alexandre Hainard
%A Caty Bigeire
%A Jennifer A. Burgess
%A Catherine Zimmermann-Ivol
%A Jean-Charles Sanchez
%A Jürg A. Schifferli
%A Denis F. Hochstrasser
%A Solange Moll
%T Proteomic analysis of a podocyte vesicle-enriched fraction from human normal and pathological urine samples
%0 Journal Article
%D 2008
%J PROTEOMICS - CLINICAL APPLICATIONS
%P 1008-1018
%V 2
%N 7-8
%U http://dx.doi.org/10.1002/prca.200800033

%A Athanasiadou S
%A Pemberton A
%A Jackson F
%A Inglis N
%A Miller HR
%A Thévenod F
%A Mackellar A
%A Huntley JF
%T Proteomic approach to identify candidate effector molecules during the in vitro immune exclusion of infective Teladorsagia circumcincta in the abomasum of sheep
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%A Repetto O
%A Rogniaux H
%A Firnhaber C
%A Zuber H
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%A Larré C
%A Thompson R
%A Gallardo K
%T Exploring the nuclear proteome of Medicago truncatula at the switch towards seed filling
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%J Plant J
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%A Babnigg G
%A Baker M
%A Berth M
%A Binz PA
%A Borthwick A
%A Cash P
%A Day BW
%A Friedman DB
%A Garland D
%A Gutstein HB
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%A Khan A
%A Klose J
%A Lamond AI
%A Lemkin PF
%A Lilley KS
%A Minden J
%A Morris NJ
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%A Prime JE
%A Rabil
%T Guidelines for reporting the use of gel electrophoresis in proteomics
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%J Nat Biotechnol
%P 863-4
%V 26
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%A Jamie D. Dunn
%A Elizabeth A. Igrisan
%A Amanda M. Palumbo
%A Gavin E. Reid
%A Merlin L. Bruening
%T Phosphopeptide Enrichment Using MALDI Plates Modified with High-Capacity Polymer Brushes
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 5727-5735
%V 80
%N 15
%U http://dx.doi.org/10.1021/ac702472j

%A Wang Y
%A Chiu JF
%T Proteomic approaches in understanding action mechanisms of metal-based anticancer drugs
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%A Aleksandr Morgulis
%A George Coulouris
%A Yan Raytselis
%A Thomas L. Madden
%A Richa Agarwala
%A Alejandro A. Schaffer
%T Database indexing for production MegaBLAST searches
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%D 2008
%J Bioinformatics
%P 1757-1764
%V 24
%N 16
%U http://dx.doi.org/10.1093/bioinformatics/btn322

%A Ransohoff DF
%A Martin C
%A Wiggins WS
%A Hitt BA
%A Keku TO
%A Galanko JA
%A Sandler RS
%T Assessment of serum proteomics to detect large colon adenomas
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%J Cancer Epidemiol Biomarkers Prev
%P 2188-93
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%A Steven D. Shnyder
%A Jonathan E. Mangum
%A Michael J. Hubbard
%T Triplex Profiling of Functionally Distinct Chaperones (ERp29/PDI/BiP) Reveals Marked Heterogeneity of the Endoplasmic Reticulum Proteome in Cancer
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%J JOURNAL OF PROTEOME RESEARCH
%P 3364-3372
%V 7
%N 08
%U http://dx.doi.org/10.1021/pr800126n

%A Liangliang Sun
%A Jicheng Duan
%A Dingyin Tao
%A Zhen Liang
%A Weibing Zhang
%A Lihua Zhang
%A Yukui Zhang
%T A facile microdialysis interface for on-line desalting and identification of proteins by nano-electrospray ionization mass spectrometry
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%J Rapid Communications in Mass Spectrometry
%P 2391-2397
%V 22
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%U http://dx.doi.org/10.1002/rcm.3622

%A Dukjin Kang
%A Sunok Oh
%A Sung-Min Ahn
%A Bong-Hee Lee
%A Myeong Hee Moon
%T Proteomic Analysis of Exosomes from Human Neural Stem Cells by Flow Field-Flow Fractionation and Nanoflow Liquid Chromatography−Tandem Mass Spectrometry
%0 Journal Article
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%J JOURNAL OF PROTEOME RESEARCH
%P 3475-3480
%V 7
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%U http://dx.doi.org/10.1021/pr800225z

%A Sowell RA
%A Owen JB
%A Allan Butterfield D
%T Proteomics in animal models of Alzheimer's and Parkinson's diseases
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%J Ageing Res Rev
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%8 Jul 18, 2008

%A Claus Lundegaard
%A Ole Lund
%A Morten Nielsen
%T Accurate approximation method for prediction of class I MHC affinities for peptides of length 8, 10 and 11 using prediction tools trained on 9mers
%0 Journal Article
%D 2008
%J Bioinformatics
%P 1397-1398
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%N 11
%U http://dx.doi.org/10.1093/bioinformatics/btn128

%A Brian M. Balgley
%A Weijie Wang
%A Tao Song
%A Xueping Fang
%A Li Yang
%A Cheng S. Lee
%T Evaluation of confidence and reproducibility in quantitative proteomics performed by a capillary isoelectric focusing-based proteomic platform coupled with a spectral counting approach
%0 Journal Article
%D 2008
%J ELECTROPHORESIS
%P 3047-3054
%V 29
%N 14
%U http://dx.doi.org/10.1002/elps.200800050

%A Tobias Grote
%A Doris R. Siwak
%A Herbert A. Fritsche
%A Corwin Joy
%A Gordon B. Mills
%A Diane Simeone
%A David C. Whitcomb
%A Craig D. Logsdon
%T Validation of reverse phase protein array for practical screening of potential biomarkers in serum and plasma: Accurate detection of CA19-9 levels in pancreatic cancer
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 3051-3060
%V 8
%N 15
%U http://dx.doi.org/10.1002/pmic.200700951

%A Hassan Dihazi
%A Claudia A. Müller
%A Harry Mattes
%A Gerhard A. Müller
%T Proteomic analysis to improve adequacy of hemo- and peritoneal dialysis: Removal of small and high molecular weight proteins with high- and low-flux filters or a peritoneal membrane
%0 Journal Article
%D 2008
%J PROTEOMICS - CLINICAL APPLICATIONS
%P 1167-1182
%V 2
%N 7-8
%U http://dx.doi.org/10.1002/prca.200780143

%A Cicchillitti L
%A Penci R
%A Di Michele M
%A Filippetti F
%A Rotilio D
%A Donati MB
%A Scambia G
%A Ferlini C
%T Proteomic characterization of cytoskeletal and mitochondrial class III {beta}-tubulin
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%J Mol Cancer Ther
%P 2070-9
%V 7
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%A Lanigan PM
%A Chan K
%A Ninkovic T
%A Templer RH
%A French PM
%A de Mello AJ
%A Willison KR
%A Parker PJ
%A Neil MA
%A Ces O
%A Klug DR
%T Spatially selective sampling of single cells using optically trapped fusogenic emulsion droplets: a new single-cell proteomic tool
%0 Journal Article
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%J J R Soc Interface
%P S161-S168
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%N Suppl 2
%U http://dx.doi.org/10.1098/rsif.2008.0249.focus

%A Byung Geun Ha
%A Jung Min Hong
%A Ju-Yong Park
%A Mi-Hyun Ha
%A Tae-Ho Kim
%A Je-Yeol Cho
%A Hyun-Mo Ryoo
%A Je-Yong Choi
%A Hong-In Shin
%A So Young Chun
%A Shin-Yoon Kim
%A Eui Kyun Park
%T Proteomic profile of osteoclast membrane proteins: Identification of Na+/H+ exchanger domain containing 2 and its role in osteoclast fusion
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 2625-2639
%V 8
%N 13
%U http://dx.doi.org/10.1002/pmic.200701192

%A Jian-ke Li
%A Mao Feng
%A Lan Zhang
%A Zhao-hui Zhang
%A Ying-hong Pan
%T Proteomics Analysis of Major Royal Jelly Protein Changes under Different Storage Conditions
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 3339-3353
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%N 08
%U http://dx.doi.org/10.1021/pr8002276

%A Edmonds RL
%A Deb Choudhury S
%A Haverkamp RG
%A Birtles M
%A Allsop TF
%A Norris GE
%T Using Proteomics, Immunohistology, and Atomic Force Microscopy To Characterize Surface Damage to Lambskins Observed after Enzymatic Dewooling
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%J J Agric Food Chem
%P 7934-41
%V 56
%N 17
%U http://dx.doi.org/10.1021/jf800380y

%A Xin Liu
%A Luis Afonso
%A Eleonora Altman
%A Stewart Johnson
%A Laura Brown
%A Jianjun Li
%T O-acetylation of sialic acids in N-glycans of Atlantic salmon (Salmo salar) serum is altered by handling stress
%0 Journal Article
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%J PROTEOMICS
%P 2849-2857
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%U http://dx.doi.org/10.1002/pmic.200701093

%A Sedic M
%A Poznic M
%A Gehrig P
%A Scott M
%A Schlapbach R
%A Hranjec M
%A Karminski-Zamola G
%A Pavelic K
%A Pavelic SK
%T Differential antiproliferative mechanisms of novel derivative of benzimidazo[1,2-{alpha}]quinoline in colon cancer cells depending on their p53 status
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%J Mol Cancer Ther
%P 2121-32
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%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18645022&dopt=Abstract

%A Shiau RJ
%A Wen YD
%A Jeang CL
%T Identification of three proteins up-regulated by raw starch in Cytophaga sp
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%J Arch Microbiol
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%8 Aug 15, 2008

%A Pucci-Minafra I
%A Albanese NN
%A Di Cara G
%A Minafra L
%A Marabeti MR
%A Cancemi P
%T Breast cancer cells exhibit selective modulation induced by different collagen substrates
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%J Connect Tissue Res
%P 252-6
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%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18661354&dopt=Abstract

%A Chiara D’Ambrosio
%A Simona Arena
%A Andrea Scaloni
%A Luc Guerrier
%A Egisto Boschetti
%A Martha Elena Mendieta
%A Attilio Citterio
%A Pier Giorgio Righetti
%T Exploring the Chicken Egg White Proteome with Combinatorial Peptide Ligand Libraries
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 3461-3474
%V 7
%N 08
%U http://dx.doi.org/10.1021/pr800193y

%A De-la-Peña C
%A Lei Z
%A Watson BS
%A Sumner LW
%A Vivanco JM
%T Root-microbe communication through protein secretion
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%J J Biol Chem
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%8 Jul 17, 2008

%A Catusse J
%A Strub JM
%A Job C
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%A Job D
%T Proteome-wide characterization of sugarbeet seed vigor and its tissue specific expression
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%J Proc Natl Acad Sci U S A
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%A Barel G
%A Ginzberg I
%T Potato skin proteome is enriched with plant defence components
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%J J Exp Bot
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%N 12
%U http://dx.doi.org/10.1093/jxb/ern184

%A Arudra Palani
%A Je-Sun Lee
%A Jiyoung Huh
%A Minsik Kim
%A Yeon-Ji Lee
%A Jeong Ho Chang
%A Kwangyeol Lee
%A Sang-Won Lee
%T Selective Enrichment of Cysteine-Containing Peptides Using SPDP-Functionalized Superparamagnetic Fe3O4@SiO2 Nanoparticles: Application to Comprehensive Proteomic Profiling
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 3591-3596
%V 7
%N 08
%U http://dx.doi.org/10.1021/pr800067x

%A George A. Riding
%A Jonathan R. Hill
%A Alun Jones
%A Michael K. Holland
%A Peter F. Josh
%A Sigrid A. Lehnert
%T Differential proteomic analysis of bovine conceptus fluid proteins in pregnancies generated by assisted reproductive technologies
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%D 2008
%J PROTEOMICS
%P 2967-2982
%V 8
%N 14
%U http://dx.doi.org/10.1002/pmic.200800008

%A Cho H
%A Kang ES
%A Hong SW
%A Oh YJ
%A Choi SM
%A Kim SW
%A Kim SH
%A Kim YT
%A Lee KS
%A Choi YK
%A Kim JH
%T Genomic and proteomic characterization of YDOV-157, a newly established human epithelial ovarian cancer cell line
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%J Mol Cell Biochem
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%8 Aug 6, 2008

%A Roche S
%A Dauvilliers Y
%A Tiers L
%A Couderc C
%A Piva MT
%A Provansal M
%A Gabelle A
%A Lehmann S
%T Autoantibody profiling on high-density protein microarrays for biomarker discovery in the cerebrospinal fluid
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%J J Immunol Methods
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%8 Jul 23, 2008

%A Guerrier L
%A D'Autreaux B
%A Atanassov C
%A Khoder G
%A Boschetti E
%T Evaluation of a standardized method of protein purification and identification after discovery by mass spectrometry
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%J J Proteomics
%P 368-78
%V 71
%N 3
%U http://dx.doi.org/10.1016/j.jprot.2008.06.003

%A Ryoji Eguchi
%A Hirotaka Naitou
%A Kazuhiro Kunimasa
%A Rie Ayuzawa
%A Yoshihiro Fujimori
%A Norio Ohashi
%A Kazuhiko Kaji
%A Toshiro Ohta
%T Proteomic analysis of hypoxia-induced tube breakdown of an in vitro capillary model composed of HUVECs: Potential role of p38-regulated reduction of HSP27
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 2897-2906
%V 8
%N 14
%U http://dx.doi.org/10.1002/pmic.200800055

%A Metzger J
%A Schanstra JP
%A Mischak H
%T Capillary electrophoresis-mass spectrometry in urinary proteome analysis: current applications and future developments
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%J Anal Bioanal Chem
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%8 Aug 15, 2008

%A Thongboonkerd V
%T Urinary proteomics: towards biomarker discovery, diagnostics and prognostics
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%J Mol Biosyst
%P 810-5
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%A Zhang X
%A Guo T
%A Wang H
%A He W
%A Mei H
%A Hong M
%A Yu J
%A Hu Y
%A Song S
%T Potential Biomarkers of Acute Cerebral Infarction Detected by SELDI-TOF-MS
%0 Journal Article
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%J Am J Clin Pathol
%P 299-304
%V 130
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%A Lia-Beng Tan
%A Kow-Tong Chen
%A Yu-Chang Tyan
%A Pao-Chi Liao
%A How-Ran Guo
%T Proteomic analysis for human urinary proteins associated with arsenic intoxication
%0 Journal Article
%D 2008
%J PROTEOMICS - CLINICAL APPLICATIONS
%P 1087-1098
%V 2
%N 7-8
%U http://dx.doi.org/10.1002/prca.200800021

%A Alexander Scherl
%A Yihsuan Shannon Tsai
%A Scott A. Shaffer
%A David R. Goodlett
%T Increasing information from shotgun proteomic data by accounting for misassigned precursor ion masses
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 2791-2797
%V 8
%N 14
%U http://dx.doi.org/10.1002/pmic.200800045

%A Mark E. Weeks
%A Deepak Hariharan
%A Ljiljana Petronijevic
%A Tomasz P. Radon
%A Hannah J. Whiteman
%A Hemant M. Kocher
%A John F. Timms
%A Nicholas R. Lemoine
%A Tatjana Crnogorac-Jurcevic
%T Analysis of the urine proteome in patients with pancreatic ductal adenocarcinoma
%0 Journal Article
%D 2008
%J PROTEOMICS - CLINICAL APPLICATIONS
%P 1047-1057
%V 2
%N 7-8
%U http://dx.doi.org/10.1002/prca.200780164

%A Astorga-Wells J
%A Tryggvason S
%A Vollmer S
%A Alvelius G
%A Palmberg C
%A Jörnvall H
%T Membrane protein identifications by mass spectrometry using selectrocapture-based separation as part of a two-dimensional fractionation system
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%J Anal Biochem
%P 33-42
%V 381
%N 1
%U http://dx.doi.org/10.1016/j.ab.2008.06.031

%A Chia-Ying Yang
%A Chao-Hui Chang
%A Ya-Ling Yu
%A Tsu-Chun Emma Lin
%A Sheng-An Lee
%A Chueh-Chuan Yen
%A Jinn-Moon Yang
%A Jin-Mei Lai
%A Yi-Ren Hong
%A Tzu-Ling Tseng
%A Kun-Mao Chao
%A Chi-Ying F. Huang
%T PhosphoPOINT: a comprehensive human kinase interactome and phospho-protein database
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%D 2008
%J Bioinformatics
%P i14-i20
%V 24
%N 16
%U http://dx.doi.org/10.1093/bioinformatics/btn297

%A Xiang-Yuan Wan and Jin-Yuan Liu
%T Comparative Proteomics Analysis Reveals an Intimate Protein Network Provoked by Hydrogen Peroxide Stress in Rice Seedling Leaves
%0 Journal Article
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%J Mol Cell Proteomics
%P 1469-1488
%V 7
%N 8
%U http://www.mcponline.org/cgi/content/abstract/7/8/1469?etoc

%A Graeme C. McAlister
%A W. Travis Berggren
%A Jens Griep-Raming
%A Stevan Horning
%A Alexander Makarov
%A Doug Phanstiel
%A George Stafford
%A Danielle L. Swaney
%A John E. P. Syka
%A Vlad Zabrouskov
%A Joshua J. Coon
%T A Proteomics Grade Electron Transfer Dissociation-Enabled Hybrid Linear Ion Trap-Orbitrap Mass Spectrometer
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 3127-3136
%V 7
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%U http://dx.doi.org/10.1021/pr800264t

%A Associated with Molecular Subtypes
%T Protein Profiling of Human Breast Tumor Cells Identifies Novel Biomarkers
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%J Mol Cell Proteomics
%P 1420-1433
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%U http://www.mcponline.org/cgi/content/abstract/7/8/1420?etoc

%A Young Wook Choi
%A Shin Ae Park
%A Hyang Woo Lee
%A Dong Su Kim
%A Na Gyong Lee
%T Analysis of growth phase-dependent proteome profiles reveals differential regulation of mRNA and protein in Helicobacter pylori
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 2665-2675
%V 8
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%U http://dx.doi.org/10.1002/pmic.200700689

%A Conn EM
%A Madsen MA
%A Cravatt BF
%A Ruf W
%A Deryugina EI
%A Quigley JP
%T Cell surface proteomics identifies molecules functionally linked to tumor cell intravasation
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%J J Biol Chem
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%8 Jul 24, 2008

%A Tseng SC
%A Liu SY
%A Yang HH
%A Lo CT
%A Peng KC
%T Proteomic Study of Biocontrol Mechanisms of Trichoderma harzianum ETS 323 in Response to Rhizoctonia solani
%0 Journal Article
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%J J Agric Food Chem
%P 6914-22
%V 56
%N 16
%U http://dx.doi.org/10.1021/jf703626j

%A Kittler R
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%A Buchholz F
%T Systems biology of mammalian cell division
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%J Cell Cycle
%P 2123-8
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%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18635956&dopt=Abstract

%A Morel E
%A Fouquet S
%A Strup-Perrot C
%A Thievend CP
%A Petit C
%A Loew D
%A Faussat AM
%A Yvernault L
%A Pinçon-Raymond M
%A Chambaz J
%A Rousset M
%A Thenet S
%A Clair C
%T The cellular prion protein PrP is involved in the proliferation of epithelial cells and in the distribution of junction-associated proteins
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%A Yingchun Fu
%A Chao Chen
%A Qingji Xie
%A Xiahong Xu
%A Can Zou
%A Qingmei Zhou
%A Liang Tan
%A Hao Tang
%A Youyu Zhang
%A Shouzhuo Yao
%T Immobilization of Enzymes through One-Pot Chemical Preoxidation and Electropolymerization of Dithiols in Enzyme-Containing Aqueous Suspensions To Develop Biosensors with Improved Performance
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 5829-5838
%V 80
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%U http://dx.doi.org/10.1021/ac800178p

%A Federico Scossa
%A Debbie Laudencia-Chingcuanco
%A Olin D. Anderson
%A William H. Vensel
%A Domenico Lafiandra
%A Renato D'Ovidio
%A Stefania Masci
%T Comparative proteomic and transcriptional profiling of a bread wheat cultivar and its derived transgenic line overexpressing a low molecular weight glutenin subunit gene in the endosperm
%0 Journal Article
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%J PROTEOMICS
%P 2948-2966
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%U http://dx.doi.org/10.1002/pmic.200700861

%A Kojima K
%A Asmellash S
%A Klug CA
%A Grizzle WE
%A Mobley JA
%A Christein JD
%T Applying Proteomic-Based Biomarker Tools for the Accurate Diagnosis of Pancreatic Cancer
%0 Journal Article
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%J J Gastrointest Surg
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%8 Aug 15, 2008

%A Matthiesen R
%A Jensen ON
%T Analysis of mass spectrometry data in proteomics
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%J Methods Mol Biol
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%A Qu N
%A Wan B
%A Guo LH
%T Label-free electrochemical differentiation of phosphorylated and non-phosphorylated peptide by electro-catalyzed tyrosine oxidation
%0 Journal Article
%D 2008
%J Analyst
%P 1246-9
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%A Williamson YM
%A Moura H
%A Woolfitt AR
%A Pirkle JL
%A Barr JR
%A Carvalho MD
%A Ades EP
%A Carlone GM
%A Sampson JS
%T Differentiation of Streptococcus pneumoniae Conjunctivitis Outbreak Isolates by Matrix-Assisted Laser-Desorption Time-of-Flight Mass Spectrometry
%0 Journal Article
%D 2008
%J Appl Environ Microbiol
%P -
%V 
%N 
%U http://dx.doi.org/10.1128/AEM.00791-08
%8 Aug 15, 2008

%A Paula Meleady
%A Michael Henry
%A Patrick Gammell
%A Padraig Doolan
%A Martin Sinacore
%A Mark Melville
%A Linda Francullo
%A Mark Leonard
%A Timothy Charlebois
%A Martin Clynes
%T Proteomic profiling of CHO cells with enhanced rhBMP-2 productivity following co-expression of PACEsol
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 2611-2624
%V 8
%N 13
%U http://dx.doi.org/10.1002/pmic.200700854

%A Krüger M
%A Moser M
%A Ussar S
%A Thievessen I
%A Luber CA
%A Forner F
%A Schmidt S
%A Zanivan S
%A Fässler R
%A Mann M
%T SILAC mouse for quantitative proteomics uncovers kindlin-3 as an essential factor for red blood cell function
%0 Journal Article
%D 2008
%J Cell
%P 353-64
%V 134
%N 2
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18662549&dopt=Abstract

%A Reschiglian P
%A Moon MH
%T Flow field-flow fractionation: A pre-analytical method for proteomics
%0 Journal Article
%D 2008
%J J Proteomics
%P 265-76
%V 71
%N 3
%U http://dx.doi.org/10.1016/j.jprot.2008.06.002

%A Lee K
%A Pi K
%T Proteomic analysis of the effect of bile salts on the intestinal and probiotic bacterium Lactobacillus reuteri
%0 Journal Article
%D 2008
%J J Biotechnol
%P -
%V 
%N 
%U http://dx.doi.org/10.1016/j.jbiotec.2008.07.1788
%8 Jul 16, 2008

%A Carmen Wolf
%A Falko Hochgräfe
%A Harald Kusch
%A Dirk Albrecht
%A Michael Hecker
%A Susanne Engelmann
%T Proteomic analysis of antioxidant strategies of Staphylococcus aureus: Diverse responses to different oxidants
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 3139-3153
%V 8
%N 15
%U http://dx.doi.org/10.1002/pmic.200701062

%A Liam A. McDonnell
%A Alexandra van Remoortere
%A René J. M. van Zeijl
%A André M. Deelder
%T Mass Spectrometry Image Correlation: Quantifying Colocalization
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 3619-3627
%V 7
%N 08
%U http://dx.doi.org/10.1021/pr800214d

%A Goggin DE
%A Mir G
%A Smith WB
%A Stuckey M
%A Smith PM
%T Proteomic Analysis of Lupin Seed Proteins To Identify Conglutin beta as an Allergen, Lup an 1
%0 Journal Article
%D 2008
%J J Agric Food Chem
%P 6370-7
%V 56
%N 15
%U http://dx.doi.org/10.1021/jf800840u

%A Meiling Lu
%A Hailin Wang
%A Zhongwen Wang
%A Xing-Fang Li
%A X. Chris Le
%T Identification of Reactive Cysteines in a Protein Using Arsenic Labeling and Collision-Induced Dissociation Tandem Mass Spectrometry
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 3080-3090
%V 7
%N 08
%U http://dx.doi.org/10.1021/pr700662y

%A Yoshio Suzuki
%A Kenji Yokoyama
%T Design and synthesis of ICT-based fluorescent probe for high-sensitivity protein detection and application to rapid protein staining for SDS-PAGE
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 2785-2790
%V 8
%N 14
%U http://dx.doi.org/10.1002/pmic.200800095

%A Amedeo A. Azizi
%A Sung-Ung Kang
%A Angelika Freilinger
%A Mariella Gruber-Olipitz
%A Wei-Qiang Chen
%A Jae-Won Yang
%A Markus Hengstschläger
%A Irene Slavc
%A Gert Lubec
%T Mitosis-Dependent Protein Expression in Neuroblastoma Cell Line N1E-115
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 3412-3422
%V 7
%N 08
%U http://dx.doi.org/10.1021/pr800149p

%A Tervahauta AI
%A Fortelius C
%A Tuomainen M
%A Akerman ML
%A Rantalainen K
%A Sipilä T
%A Lehesranta SJ
%A Koistinen KM
%A Kärenlampi S
%A Yrjälä K
%T Effect of birch (Betula spp.) and associated rhizoidal bacteria on the degradation of soil polyaromatic hydrocarbons, PAH-induced changes in birch proteome and bacterial community
%0 Journal Article
%D 2008
%J Environ Pollut
%P -
%V 
%N 
%U http://dx.doi.org/10.1016/j.envpol.2008.06.031
%8 Jul 31, 2008

%A Raquel Martínez-López
%A César Nombela
%A Rosalía Diez-Orejas
%A Lucía Monteoliva
%A Concha Gil
%T Immunoproteomic analysis of the protective response obtained from vaccination with Candida albicans ecm33 cell wall mutant in mice
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 2651-2664
%V 8
%N 13
%U http://dx.doi.org/10.1002/pmic.200701056

%A Shao C
%A Sun W
%A Li F
%A Yang R
%A Zhang L
%A Gao Y
%T Oscore: a combined score to reduce false negative rates for peptide identification in tandem mass spectrometry analysis
%0 Journal Article
%D 2008
%J J Mass Spectrom
%P -
%V 
%N 
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%8 Aug 12, 2008

%A Julia E. Bandow
%A John D. Baker
%A Matthias Berth
%A Cory Painter
%A Osvaldo J. Sepulveda
%A Kelly A. Clark
%A Iain Kilty
%A Ruth A. VanBogelen
%T Improved image analysis workflow for 2-D gels enables large-scale 2-D gel-based proteomics studies - COPD biomarker discovery study
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 3030-3041
%V 8
%N 15
%U http://dx.doi.org/10.1002/pmic.200701184

%A Malika Rakhmankulova
%A Steven W. Stavrou
%A Alvis P. Yuen
%A Raymond Zhou
%A Paul Kessler
%A Paul H. Pevsner
%T Micropipette tips - the unsung heroes of mass spectrometry
%0 Journal Article
%D 2008
%J Rapid Communications in Mass Spectrometry
%P 2349-2354
%V 22
%N 15
%U http://dx.doi.org/10.1002/rcm.3620

%A Chen CH
%T Review of a current role of mass spectrometry for proteome research
%0 Journal Article
%D 2008
%J Anal Chim Acta
%P 16-36
%V 624
%N 1
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18706308&dopt=Abstract

%A Girish Sardana
%A Klaus Jung
%A Carsten Stephan
%A Eleftherios P. Diamandis
%T Proteomic Analysis of Conditioned Media from the PC3, LNCaP, and 22Rv1 Prostate Cancer Cell Lines: Discovery and Validation of Candidate Prostate Cancer Biomarkers
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 3329-3338
%V 7
%N 08
%U http://dx.doi.org/10.1021/pr8003216

%A Reine Nehmé
%A Catherine Perrin
%A Hervé Cottet
%A Marie D. Blanchin
%A Huguette Fabre
%T Influence of polyelectrolyte coating conditions on capillary coating stability and separation efficiency in capillary electrophoresis
%0 Journal Article
%D 2008
%J ELECTROPHORESIS
%P 3013-3023
%V 29
%N 14
%U http://dx.doi.org/10.1002/elps.200700886

%A Chen Y
%A Lim BK
%A Peh SC
%A Abdul-Rahman PS
%A Hashim OH
%T Profiling of serum and tissue high abundance acute-phase proteins of patients with epithelial and germ line ovarian carcinoma
%0 Journal Article
%D 
%J 
%P -
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%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18637207&dopt=Abstract

%A Petra Tafelmeyer
%A Christine Laurent
%A Pascal Lenormand
%A Jean-Claude Rousselle
%A Laurent Marsollier
%A Gilles Reysset
%A Runxuan Zhang
%A Albert Sickmann
%A Timothy P. Stinear
%A Abdelkader Namane
%A Stewart T. Cole
%T Comprehensive proteome analysis of Mycobacterium ulcerans and quantitative comparison of mycolactone biosynthesis
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 3124-3138
%V 8
%N 15
%U http://dx.doi.org/10.1002/pmic.200701018

%A Ruan Y
%A Pei W
%A Wan M
%T Membrane protein analysis of human breast cancer cell line MCF-7 by different membrane washing methods
%0 Journal Article
%D 2008
%J Cell Biochem Funct
%P -
%V 
%N 
%U http://dx.doi.org/10.1002/cbf.1507
%8 Aug 13, 2008

%A Reisinger V
%A Eichacker LA
%T Solubilization of membrane protein complexes for blue native PAGE
%0 Journal Article
%D 2008
%J J Proteomics
%P 277-83
%V 71
%N 3
%U http://dx.doi.org/10.1016/j.jprot.2008.05.004

%A Dea-Ayuela MA
%A Pérez-Castillo Y
%A Meneses-Marcel A
%A Ubeira FM
%A Bolas-Fernández F
%A Chou KC
%A González-Díaz H
%T HP-Lattice QSAR for dynein proteins: Experimental proteomics (2D-electrophoresis, mass spectrometry) and theoretic study of a Leishmania infantum sequence
%0 Journal Article
%D 2008
%J Bioorg Med Chem
%P 7770-6
%V 16
%N 16
%U http://dx.doi.org/10.1016/j.bmc.2008.07.023

%A Zhang L
%A Perdomo G
%A Kim DH
%A Qu S
%A Ringquist S
%A Trucco M
%A Dong HH
%T Proteomic analysis of fructose-induced fatty liver in hamsters
%0 Journal Article
%D 2008
%J Metabolism
%P 1115-24
%V 57
%N 8
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18640390&dopt=Abstract

%A Noboru Okamura
%A Taro Masuda
%A Akinobu Gotoh
%A Toshiro Shirakawa
%A Shuji Terao
%A Naoki Kaneko
%A Kazuki Suganuma
%A Makoto Watanabe
%A Toshiya Matsubara
%A Ryota Seto
%A Jun Matsumoto
%A Megumi Kawakami
%A Motohiro Yamamori
%A Tsutomu Nakamura
%A Tatsurou Yagami
%A Toshiyuki Saka
%T Quantitative proteomic analysis to discover potential diagnostic markers and therapeutic targets in human renal cell carcinoma
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 3194-3203
%V 8
%N 15
%U http://dx.doi.org/10.1002/pmic.200700619

%A A.M. Willemsen
%A G.A. Jansen
%A J.C. Komen
%A S. van Hooff
%A H.R. Waterham
%A P.M.T. Brites
%A R.J.A. Wanders
%A A.H.C. van Kampen
%T Organization and integration of biomedical knowledge with concept maps for key peroxisomal pathways
%0 Journal Article
%D 2008
%J Bioinformatics
%P i21-i27
%V 24
%N 16
%U http://dx.doi.org/10.1093/bioinformatics/btn274

%A Seyoon Kim
%A Yong Zu Lee
%A Yu Sam Kim
%A Young Yil Bahk
%T A Proteomic approach for protein-profiling the oncogenic ras induced transformation (H-, K-, and N-Ras) in NIH/3T3 mouse embryonic fibroblasts
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 3082-3093
%V 8
%N 15
%U http://dx.doi.org/10.1002/pmic.200800106

%A Ru Y
%A Wang BB
%A Brendel V
%T Spliceosomal proteins in plants
%0 Journal Article
%D 2008
%J Curr Top Microbiol Immunol
%P 1-15
%V 326
%N 
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%A Tine E. Thingholm
%A Martin R. Larsen
%A Christian R. Ingrell
%A Moustapha Kassem
%A Ole N. Jensen
%T TiO2-Based Phosphoproteomic Analysis of the Plasma Membrane and the Effects of Phosphatase Inhibitor Treatment
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 3304-3313
%V 7
%N 08
%U http://dx.doi.org/10.1021/pr800099y

%A Hack Sun Choi
%A Kyu Young Song
%A Cheol Kyu Hwang
%A Chun Sung Kim
%A Ping-Yee Law
%A Li-Na Wei
%A Horace H. Loh
%T A Proteomics Approach for Identification of Single Strand DNA-binding Proteins Involved in Transcriptional Regulation of Mouse {micro} Opioid Receptor Gene
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 1517-1529
%V 7
%N 8
%U http://www.mcponline.org/cgi/content/abstract/7/8/1517?etoc

%A Guy Klaiman
%A Tracy L. Petzke
%A Jennifer Hammond
%A Andrea C. LeBlanc
%T Targets of Caspase-6 Activity in Human Neurons and Alzheimer Disease
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 1541-1555
%V 7
%N 8
%U http://www.mcponline.org/cgi/content/abstract/7/8/1541?etoc

%A Niccolò Bosso
%A Clizia Chinello
%A Stefano Carlo Maria Picozzi
%A Erica Gianazza
%A Veronica Mainini
%A Carmen Galbusera
%A Francesca Raimondo
%A Roberto Perego
%A Stefano Casellato
%A Francesco Rocco
%A Stefano Ferrero
%A Silvano Bosari
%A Paolo Mocarelli
%A Marzia Galli Kienle,
%T Human urine biomarkers of renal cell carcinoma evaluated by ClinProt
%0 Journal Article
%D 2008
%J PROTEOMICS - CLINICAL APPLICATIONS
%P 1036-1046
%V 2
%N 7-8
%U http://dx.doi.org/10.1002/prca.200780139

%A Ying N
%A Zheng Z
%A Xu H
%A Tian B
%A Hua Y
%T Extracellular proteome changes of Deinococcus radiodurans under gamma-irradiation stress conditions
%0 Journal Article
%D 2008
%J Protein Pept Lett
%P 595-9
%V 15
%N 6
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18680455&dopt=Abstract

%A Han J
%A Takenaka M
%A Talorete TP
%A Funamizu N
%A Isoda H
%T Toxicity assessment of wastewater by proteomics analysis
%0 Journal Article
%D 
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%A Benjamin J. Cargile
%A Joel R. Sevinsky
%A Amal S. Essader
%A Jerry P. Eu
%A James L. Stephenson Jr
%T Calculation of the isoelectric point of tryptic peptides in the pH 3.5-4.5 range based on adjacent amino acid effects
%0 Journal Article
%D 2008
%J ELECTROPHORESIS
%P 2768-2778
%V 29
%N 13
%U http://dx.doi.org/10.1002/elps.200700701

%A Mikhail E. Belov
%A Brian H. Clowers
%A David C. Prior
%A William F. Danielson III
%A Andrei V. Liyu
%A Brianne O. Petritis
%A Richard D. Smith
%T Dynamically Multiplexed Ion Mobility Time-of-Flight Mass Spectrometry
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 5873-5883
%V 80
%N 15
%U http://dx.doi.org/10.1021/ac8003665

%A Hart SR
%A Gaskell SJ
%T Methods of proteome analysis: challenges and opportunities
%0 Journal Article
%D 2008
%J SEB Exp Biol Ser
%P 37-64
%V 61
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%A Wang F
%A Ye M
%A Dong J
%A Tian R
%A Hu L
%A Han G
%A Jiang X
%A Wu R
%A Zou H
%T Improvement of performance in label-free quantitative proteome analysis with monolithic electrospray ionization emitter
%0 Journal Article
%D 2008
%J J Sep Sci
%P 2589-2597
%V 31
%N 14
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18693305&dopt=Abstract

%A Joanna Potrykus
%A Robert L. White
%A Stephen L. Bearne
%T Proteomic investigation of amino acid catabolism in the indigenous gut anaerobe Fusobacterium varium
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 2691-2703
%V 8
%N 13
%U http://dx.doi.org/10.1002/pmic.200700437

%A Cristobal S
%T Proteomics-based method for risk assessment of peroxisome proliferating pollutants in the marine environment
%0 Journal Article
%D 2008
%J Methods Mol Biol
%P 123-35
%V 410
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%A Liu B
%A Zhang X
%T Deep-sea thermophilic Geobacillus bacteriophage GVE2 transcriptional profile and proteomic characterization of virions
%0 Journal Article
%D 2008
%J Appl Microbiol Biotechnol
%P 697-707
%V 80
%N 4
%U http://dx.doi.org/10.1007/s00253-008-1575-2

%A Provoked by Hydrogen Peroxide Stress in Rice Seedling Leaves
%T Comparative Proteomics Analysis Reveals an Intimate Protein Network
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 1469-1488
%V 7
%N 8
%U http://www.mcponline.org/cgi/content/abstract/7/8/1469?etoc

%A Selbach M
%A Schwanhäusser B
%A Thierfelder N
%A Fang Z
%A Khanin R
%A Rajewsky N
%T Widespread changes in protein synthesis induced by microRNAs
%0 Journal Article
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%J Nature
%P 58-63
%V 455
%N 7209
%U http://dx.doi.org/10.1038/nature07228

%A Li X
%A Jin Q
%A Cao J
%A Xie C
%A Cao R
%A Liu Z
%A Xiong J
%A Li J
%A Yang X
%A Chen P
%A Liang S
%T Evaluation of two cell surface modification methods for proteomic analysis of plasma membrane from isolated mouse hepatocytes
%0 Journal Article
%D 2008
%J Biochim Biophys Acta
%P -
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%N 
%U http://dx.doi.org/10.1016/j.bbapap.2008.07.009
%8 Jul 28, 2008

%A Takano S
%A Togawa A
%A Yoshitomi H
%A Shida T
%A Kimura F
%A Shimizu H
%A Yoshidome H
%A Ohtsuka M
%A Kato A
%A Tomonaga T
%A Nomura F
%A Miyazaki M
%T Annexin II Overexpression Predicts Rapid Recurrence after Surgery in Pancreatic Cancer Patients Undergoing Gemcitabine-Adjuvant Chemotherapy
%0 Journal Article
%D 2008
%J Ann Surg Oncol
%P -
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%N 
%U http://dx.doi.org/10.1245/s10434-008-0061-5
%8 Aug 20, 2008

%A Ferrero S
%A Gillott DJ
%A Remorgida V
%A Anserini P
%A Ragni N
%A Grudzinskas JG
%T Increased expression of one isoform of leucine-rich alpha-2-glycoprotein in peritoneal fluid of women with uterine leiomyomas
%0 Journal Article
%D 2008
%J Arch Gynecol Obstet
%P -
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%N 
%U http://dx.doi.org/10.1007/s00404-008-0741-1
%8 Jul 30, 2008

%A Kristoffer Forslund and Erik L. L. Sonnhammer
%T Predicting protein function from domain content
%0 Journal Article
%D 2008
%J Bioinformatics
%P 1681-1687
%V 24
%N 15
%U http://dx.doi.org/10.1093/bioinformatics/btn312

%A Gatehouse HS
%A Marshall SD
%A Simpson RM
%A Gatehouse LN
%A Jackson TA
%A Christeller JT
%T Serratia entomophila inoculation causes a defect in exocytosis in Costelytra zealandica larvae
%0 Journal Article
%D 2008
%J Insect Mol Biol
%P 375-85
%V 17
%N 4
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18651919&dopt=Abstract

%A Lisa Berglund
%A Erik Björling
%A Kalle Jonasson
%A Johan Rockberg
%A Linn Fagerberg
%A Cristina Al-Khalili Szigyarto
%A Åsa Sivertsson
%A Mathias Uhlén
%T A whole-genome bioinformatics approach to selection of antigens for systematic antibody generation
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 2832-2839
%V 8
%N 14
%U http://dx.doi.org/10.1002/pmic.200800203

%A Liang Shi
%A Yuan Wang
%A Shuyang Tu
%A Xiaolei Li
%A Maomao Sun
%A Sanjay Srivastava
%A Ningzhi Xu
%A Aruni Bhatnagar
%A Siqi Liu
%T The Responses of Mitochondrial Proteome in Rat Liver to the Consumption of Moderate Ethanol: The Possible Roles of Aldo-Keto Reductases
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 3137-3145
%V 7
%N 08
%U http://dx.doi.org/10.1021/pr700853j

%A Qu N
%A Jiang J
%A Sun L
%A Lai C
%A Sun L
%A Wu X
%T Proteomic Characterization of Royal Jelly Proteins in Chinese (Apis cerana cerana) and European (Apis mellifera) Honeybees
%0 Journal Article
%D 2008
%J Biochemistry (Mosc)
%P 676-80
%V 73
%N 6
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18620533&dopt=Abstract

%A Sullivan CA
%A Chung GG
%T Biomarker validation: in situ analysis of protein expression using semiquantitative immunohistochemistry-based techniques
%0 Journal Article
%D 2008
%J Clin Colorectal Cancer
%P 172-7
%V 7
%N 3
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18621634&dopt=Abstract

%A Annabelle Fernandez
%A Jun Ogawa
%A Stéphanie Penaud
%A Samira Boudebbouze
%A Dusko Ehrlich
%A Maarten van de Guchte
%A Emmanuelle Maguin
%T Rerouting of pyruvate metabolism during acid adaptation in Lactobacillus bulgaricus
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 3154-3163
%V 8
%N 15
%U http://dx.doi.org/10.1002/pmic.200700974

%A Navas-Acien A
%A Guallar E
%T Measuring Arsenic Exposure, Metabolism and Biological Effects: The Role of Urine Proteomics
%0 Journal Article
%D 2008
%J Toxicol Sci
%P -
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%U http://dx.doi.org/10.1093/toxsci/kfn172
%8 Aug 18, 2008

%A Martin B
%A Brenneman R
%A Becker KG
%A Gucek M
%A Cole RN
%A Maudsley S
%T iTRAQ analysis of complex proteome alterations in 3xTgAD Alzheimer's mice: understanding the interface between physiology and disease
%0 Journal Article
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%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18648646&dopt=Abstract

%A Daniel López-Ferrer
%A Konstantinos Petritis
%A Kim K. Hixson
%A Tyler H. Heibeck
%A Ronald J. Moore
%A Mikhail E. Belov
%A David G. Camp II
%A Richard D. Smith
%T Application of Pressurized Solvents for Ultrafast Trypsin Hydrolysis in Proteomics: Proteomics on the Fly
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 3276-3281
%V 7
%N 08
%U http://dx.doi.org/10.1021/pr7008077

%A Séverine A. Ouvry-Patat
%A Matthew P. Torres
%A Hung-Hiang Quek
%A Craig A. Gelfand
%A Patrick O'Mullan
%A Mikkel Nissum
%A Gottfried K. Schroeder
%A Jun Han
%A Monica Elliott
%A Deanna Dryhurst
%A Juan Ausio
%A Richard Wolfenden
%A Christoph H. Borchers
%T Free-flow electrophoresis for top-down proteomics by Fourier transform ion cyclotron resonance mass spectrometry
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 2798-2808
%V 8
%N 14
%U http://dx.doi.org/10.1002/pmic.200800079

%A Magno Junqueira
%A Victor Spirin
%A Tiago Santana Balbuena
%A Patrice Waridel
%A Vineeth Surendranath
%A Grigoriy Kryukov
%A Ivan Adzhubei
%A Henrik Thomas
%A Shamil Sunyaev
%A Andrej Shevchenko
%T Separating the Wheat from the Chaff: Unbiased Filtering of Background Tandem Mass Spectra Improves Protein Identification
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 3382-3395
%V 7
%N 08
%U http://dx.doi.org/10.1021/pr800140v

%A Berta Martín
%A Rebeca Sanz
%A Ramón Aragüés
%A Baldo Oliva
%A Angels Sierra
%T Functional Clustering of Metastasis Proteins Describes Plastic Adaptation Resources of Breast-Cancer Cells to New Microenvironments
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 3242-3253
%V 7
%N 08
%U http://dx.doi.org/10.1021/pr800137w

%A Edmond O'Riordan
%A Tatyana N. Orlova
%A Natalia Mendelev
%A Daniel Patschan
%A Rowena Kemp
%A Praveen N. Chander
%A Rena Hu
%A Gang Hao
%A Steven S. Gross
%A Renato V. Iozzo
%A Veronica Delaney
%A Michael S. Goligorsky
%T Urinary proteomic analysis of chronic allograft nephropathy
%0 Journal Article
%D 2008
%J PROTEOMICS - CLINICAL APPLICATIONS
%P 1025-1035
%V 2
%N 7-8
%U http://dx.doi.org/10.1002/prca.200780137

%A Jonathan Z. Pan
%A Jin Xi
%A Maryellen F. Eckenhoff
%A Roderic G. Eckenhoff
%T Inhaled anesthetics elicit region-specific changes in protein expression in mammalian brain
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 2983-2992
%V 8
%N 14
%U http://dx.doi.org/10.1002/pmic.200800057

%A Dejgaard SY
%A Murshid A
%A Erman A
%A Kizilay O
%A Verbich D
%A Lodge R
%A Dejgaard K
%A Ly-Hartig TB
%A Pepperkok R
%A Simpson JC
%A Presley JF
%T Rab18 and Rab43 have key roles in ER-Golgi trafficking
%0 Journal Article
%D 2008
%J J Cell Sci
%P 2768-81
%V 121
%N Pt 16
%U http://dx.doi.org/10.1242/jcs.021808

%A Judit M. Nagy
%T 2nd BSPR London Regional Meeting and 6th Annual Imperial Proteomics Day November 2007, Imperial College London, London, UK
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 2574-2578
%V 8
%N 13
%U http://dx.doi.org/10.1002/pmic.200800318

%A Khan A
%A Williams KL
%A Soon J
%A Nevalainen HK
%T Proteomic analysis of the knob-producing nematode-trapping fungus Monacrosporium lysipagum
%0 Journal Article
%D 2008
%J Mycol Res
%P -
%V 
%N 
%U http://dx.doi.org/10.1016/j.mycres.2008.06.003
%8 Jul 2, 2008

%A Ruijun Tian
%A Lingdong Li
%A Wei Tang
%A Hongwei Liu
%A Mingliang Ye
%A Zongbao K. Zhao
%A Hanfa Zou
%T Chemical proteomic study of isoprenoid chain interactome with a synthetic photoaffinity probe
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 3094-3104
%V 8
%N 15
%U http://dx.doi.org/10.1002/pmic.200800021

%A Seo GM
%A Cheng C
%A Tomich J
%A Ganta RR
%T Total, membrane, and immunogenic proteomes of macrophage- and tick cell-derived Ehrlichia chaffeensis evaluated by LC-MS/MS and MALDI-TOF methods
%0 Journal Article
%D 2008
%J Infect Immun
%P -
%V 
%N 
%U http://dx.doi.org/10.1128/IAI.00484-08
%8 Aug 18, 2008

%A Yang G
%A Wang L
%A Zhu M
%A Xu D
%T Identification of non-Alzheimer's disease tauopathies-related proteins by proteomic analysis
%0 Journal Article
%D 2008
%J Neurol Res
%P 613-22
%V 30
%N 6
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18647502&dopt=Abstract

%A Wupeng Liao
%A Zhang Bao
%A Chang Cheng
%A Yu-Keung Mok
%A W. S. Fred Wong
%T Dendritic cell-derived interferon-?-induced protein mediates tumor necrosis factor-? stimulation of human lung fibroblasts
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 2640-2650
%V 8
%N 13
%U http://dx.doi.org/10.1002/pmic.200700954

%A Vanlaere E
%A Sergeant K
%A Dawyndt P
%A Kallow W
%A Erhard M
%A Sutton H
%A Dare D
%A Devreese B
%A Samyn B
%A Vandamme P
%T Matrix-assisted laser desorption ionisation-time-of of-flight mass spectrometry of intact cells allows rapid identification of Burkholderia cepacia complex
%0 Journal Article
%D 2008
%J J Microbiol Methods
%P -
%V 
%N 
%U http://dx.doi.org/10.1016/j.mimet.2008.06.016
%8 Jun 25, 2008

%A Lüthi AU
%A Cullen SP
%A Martin SJ
%T Chapter seventeen two-dimensional gel-based analysis of the demolition phase of apoptosis
%0 Journal Article
%D 2008
%J Methods Enzymol
%P 343-54
%V 442
%N 
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18662578&dopt=Abstract

%A Park KS
%A Mohapatra DP
%A Trimmer JS
%T Proteomic analyses of K(v)2.1 channel phosphorylation sites determining cell background specific differences in function
%0 Journal Article
%D 2007
%J Channels (Austin)
%P 59-61
%V 1
%N 2
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18690023&dopt=Abstract

%A Shu-Yu Lin
%A Yi-Yun Chen
%A Yao-Yun Fan
%A Chia-Wei Lin
%A Shui-Tsung Chen
%A Andrew H.-J. Wang
%A Kay-Hooi Khoo
%T Precise Mapping of Increased Sialylation Pattern and the Expression of Acute Phase Proteins Accompanying Murine Tumor Progression in BALB/c Mouse by Integrated Sera Proteomics and Glycomics
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 3293-3303
%V 7
%N 08
%U http://dx.doi.org/10.1021/pr800093b

%A Hartl D
%A Rohe M
%A Mao L
%A Staufenbiel M
%A Zabel C
%A Klose J
%T Impairment of adolescent hippocampal plasticity in a mouse model for Alzheimer's disease precedes disease phenotype
%0 Journal Article
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%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18648492&dopt=Abstract

%A Ishida YI
%A Yamashita K
%A Sasaki H
%A Takajou I
%A Kubuki Y
%A Morishita K
%A Tsubouchi H
%A Okayama A
%T Activation of complement system in adult T-cell leukemia (ATL) occurs mainly through lectin pathway: A serum proteomic approach using mass spectrometry
%0 Journal Article
%D 2008
%J Cancer Lett
%P -
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%N 
%U http://dx.doi.org/10.1016/j.canlet.2008.06.004
%8 Aug 6, 2008

%A Johannes Stadlmann
%A Martin Pabst
%A Daniel Kolarich
%A Renate Kunert
%A Friedrich Altmann
%T Analysis of immunoglobulin glycosylation by LC-ESI-MS of glycopeptides and oligosaccharides
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 2858-2871
%V 8
%N 14
%U http://dx.doi.org/10.1002/pmic.200700968

%A Subhash Thalappilly
%A Muhtadi Suliman
%A Odile Gayet
%A Philippe Soubeyran
%A Aurélie Hermant
%A Patrick Lecine
%A Juan L. Iovanna
%A Nelson J. Dusetti
%T Identification of multi-SH3 domain-containing protein interactome in pancreatic cancer: A yeast two-hybrid approach
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 3071-3081
%V 8
%N 15
%U http://dx.doi.org/10.1002/pmic.200701157

%A Samson Jamesdaniel
%A Dalian Ding
%A Mohammad Habiby Kermany
%A Bruce A. Davidson
%A Paul R. Knight III
%A Richard Salvi
%A Donald E. Coling
%T Proteomic Analysis of the Balance between Survival and Cell Death Responses in Cisplatin-Mediated Ototoxicity
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 3516-3524
%V 7
%N 08
%U http://dx.doi.org/10.1021/pr8002479

%A Samuel H. Payne
%A Margaret Yau
%A Marcus B. Smolka
%A Stephen Tanner
%A Huilin Zhou
%A Vineet Bafna
%T Phosphorylation-Specific MS/MS Scoring for Rapid and Accurate Phosphoproteome Analysis
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 3373-3381
%V 7
%N 08
%U http://dx.doi.org/10.1021/pr800129m

%A Dong F
%A Ma L
%A Chrétien M
%A Mbikay M
%T Proteomic analysis of neuroendocrine peptidergic system disruption using the AtT20 pituitary cell line as a model
%0 Journal Article
%D 2008
%J Methods Mol Biol
%P 111-22
%V 410
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%A Zhu Z
%A Edwards RJ
%A Boobis AR
%T Proteomic analysis of human breast cell lines using SELDI-TOF MS shows that mixtures of estrogenic compounds exhibit simple similar action (concentration additivity)
%0 Journal Article
%D 2008
%J Toxicol Lett
%P -
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%N 
%U http://dx.doi.org/10.1016/j.toxlet.2008.07.006
%8 Jul 15, 2008

%A Sheng Wang
%A Luyan Zhang
%A Pengyuan Yang
%A Gang Chen
%T Infrared-assisted tryptic proteolysis for peptide mapping
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 2579-2582
%V 8
%N 13
%U http://dx.doi.org/10.1002/pmic.200800086

%A Merrihew GE
%A Davis C
%A Ewing B
%A Williams G
%A Kall L
%A Frewen BE
%A Noble WS
%A Green P
%A Thomas JH
%A Maccoss MJ
%T Use of shotgun proteomics for the identification, confirmation, and correction of C. elegans gene annotations
%0 Journal Article
%D 2008
%J Genome Res
%P -
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%N 
%U http://dx.doi.org/10.1101/gr.077644.108
%8 Jul 24, 2008

%A Zhang DF
%A Jiang B
%A Xiang ZM
%A Wang SY
%T Functional characterisation of altered outer membrane proteins for tetracycline resistance in Escherichia coli
%0 Journal Article
%D 2008
%J Int J Antimicrob Agents
%P -
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%N 
%U http://dx.doi.org/10.1016/j.ijantimicag.2008.04.015
%8 Jul 10, 2008

%A Xiao-yan Huang
%A Xue-jiang Guo
%A Jian Shen
%A Yu-feng Wang
%A Lin Chen
%A Jin Xie
%A Ning-ling Wang
%A Fu-qiang Wang
%A Chun Zhao
%A Ran Huo
%A Min Lin
%A Xinru Wang
%A Zuo-min Zhou
%A Jia-hao Sha
%T Construction of a Proteome Profile and Functional Analysis of the Proteins Involved in the Initiation of Mouse Spermatogenesis
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 3435-3446
%V 7
%N 08
%U http://dx.doi.org/10.1021/pr800179h

%A Steil L
%A Thiele T
%A Hammer E
%A Bux J
%A Kalus M
%A Völker U
%A Greinacher A
%T Proteomic characterization of freeze-dried human plasma: providing treatment of bleeding disorders without the need for a cold chain
%0 Journal Article
%D 2008
%J Transfusion
%P -
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%N 
%U http://dx.doi.org/10.1111/j.1537-2995.2008.01856.x
%8 Jul 22, 2008

%A Tanaka S
%A Sakai A
%A Kimura K
%A Yoshida H
%A Fushitani H
%A Ogata A
%A Miyamoto A
%A Fukushima M
%A Wada A
%A Tanigawa N
%T Proteomic analysis of the basic proteins in 5-fluorouracil resistance of human colon cancer cell line using the radical-free and highly reducing method of two-dimensional polyacrylamide gel electrophoresis
%0 Journal Article
%D 2008
%J Int J Oncol
%P 361-70
%V 33
%N 2
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18636157&dopt=Abstract

%A Quaresima B
%A Crugliano T
%A Gaspari M
%A Faniello MC
%A Cosimo P
%A Valanzano R
%A Genuardi M
%A Cannataro M
%A Veltri P
%A Baudi F
%A Doldo P
%A Cuda G
%A Venuta S
%A Costanzo F
%T A proteomics approach to identify changes in protein profiles in serum of Familial Adenomatous Polyposis patients
%0 Journal Article
%D 2008
%J Cancer Lett
%P -
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%U http://dx.doi.org/10.1016/j.canlet.2008.06.021
%8 Jul 28, 2008

%A Merchant ML
%A Cummins T
%A Wilkey DW
%A Salyer SA
%A Powell DW
%A Klein JB
%A Lederer ED
%T Proteomic analysis of renal calculi indicates an important role for inflammatory processes in calcium stone formation
%0 Journal Article
%D 2008
%J Am J Physiol Renal Physiol
%P -
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%N 
%U http://dx.doi.org/10.1152/ajprenal.00134.2008
%8 Aug 13, 2008

%A Martins-de-Souza D
%A Gattaz WF
%A Schmitt A
%A Rewerts C
%A Maccarrone G
%A Dias-Neto E
%A Turck CW
%T Proteome analysis of human dorsolateral prefrontal cortex using shotgun mass spectrometry
%0 Journal Article
%D 2008
%J J Sep Sci
%P -
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%N 
%U http://dx.doi.org/10.1002/jssc.200800224
%8 Aug 11, 2008

%A Yuki Fukagawa
%A Jun Nishikawa
%A Yasuhiro Kuramitsu
%A Dai Iwakiri
%A Kenzo Takada
%A Shousuke Imai
%A Masaaki Satake
%A Takeshi Okamoto
%A Masanori Fujimoto
%A Kiwamu Okita
%A Kazuyuki Nakamura
%A Isao Sakaida
%T Epstein-Barr virus upregulates phosphorylated heat shock protein 27 kDa in carcinoma cells using the phosphoinositide 3-kinase/Akt pathway
%0 Journal Article
%D 2008
%J ELECTROPHORESIS
%P 3192-3200
%V 29
%N 15
%U http://dx.doi.org/10.1002/elps.200800086

%A Kurulugama RT
%A Valentine SJ
%A Sowell RA
%A Clemmer DE
%T Development of a high-throughput IMS-IMS-MS approach for analyzing mixtures of biomolecules
%0 Journal Article
%D 2008
%J J Proteomics
%P 318-31
%V 71
%N 3
%U http://dx.doi.org/10.1016/j.jprot.2008.06.010

%A Hansell E
%A Braschi S
%A Medzihradszky KF
%A Sajid M
%A Debnath M
%A Ingram J
%A Lim KC
%A McKerrow JH
%T Proteomic analysis of skin invasion by blood fluke larvae
%0 Journal Article
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%A E. J. LaCourse
%A S. Perally
%A M. Hernandez-Viadel
%A H. A. Wright
%A P. M. Brophy
%T A Proteomics Approach To Quantify Protein Levels Following RNA Interference: Case Study with Glutathione Transferase Superfamily from the Model Metazoan Caenorhabditis elegans
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 3314-3318
%V 7
%N 08
%U http://dx.doi.org/10.1021/pr8001035

%A Kosuke Hashimoto
%A Ichigaku Takigawa
%A Motoki Shiga
%A Minoru Kanehisa
%A Hiroshi Mamitsuka
%T Mining significant tree patterns in carbohydrate sugar chains
%0 Journal Article
%D 2008
%J Bioinformatics
%P i167-i173
%V 24
%N 16
%U http://dx.doi.org/10.1093/bioinformatics/btn293

%A Blow N
%T Mass spectrometry and proteomics: hitting the mark
%0 Journal Article
%D 2008
%J Nat Methods
%P 741-747
%V 5
%N 8
%U http://dx.doi.org/10.1038/nmeth0808-741

%A Jardin-Mathe O
%A Bonnel D
%A Franck J
%A Wisztorski M
%A Macagno E
%A Fournier I
%A Salzet M
%T MITICS (MALDI Imaging Team Imaging Computing System): A new open source mass spectrometry imaging software
%0 Journal Article
%D 2008
%J J Proteomics
%P 332-45
%V 71
%N 3
%U http://dx.doi.org/10.1016/j.jprot.2008.07.004

%A Richardson MR
%A Lai X
%A Mason SB
%A Miller SJ
%A Witzmann FA
%T Differential protein expression during aging in ventricular myocardium of Fischer 344xBrown Norway hybrid rats
%0 Journal Article
%D 2008
%J Exp Gerontol
%P -
%V 
%N 
%U http://dx.doi.org/10.1016/j.exger.2008.07.003
%8 Jul 15, 2008

%A Oh MH
%A Jeong HG
%A Choi SH
%T Proteomic Identification and Characterization of Vibrio vulnificus Proteins Induced upon Exposure to INT-407 Intestinal Epithelial Cells
%0 Journal Article
%D 2008
%J J Microbiol Biotechnol
%P 968-74
%V 18
%N 5
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18633300&dopt=Abstract

%A Ole B. Hørning
%A Frank Kjeldsen
%A Søren Theodorsen
%A Ole Vorm
%A Ole N. Jensen
%T Isocratic Solid Phase Extraction-Liquid Chromatography (SPE-LC) Interfaced to High-Performance Tandem Mass Spectrometry for Rapid Protein Identification
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 3159-3167
%V 7
%N 08
%U http://dx.doi.org/10.1021/pr700865c

%A Yun-Gon Kim
%A Geun-Cheol Gil
%A David J. Harvey
%A Byung-Gee Kim
%T Structural analysis of ?-Gal and new non-Gal carbohydrate epitopes from specific pathogen-free miniature pig kidney
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 2596-2610
%V 8
%N 13
%U http://dx.doi.org/10.1002/pmic.200700972

%A Pierre Chaurand
%A Joey C. Latham
%A Kirk B. Lane
%A James A. Mobley
%A Vasiliy V. Polosukhin
%A Pamela S. Wirth
%A Lillian B. Nanney
%A Richard M. Caprioli
%T Imaging Mass Spectrometry of Intact Proteins from Alcohol-Preserved Tissue Specimens: Bypassing Formalin Fixation
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 3543-3555
%V 7
%N 08
%U http://dx.doi.org/10.1021/pr800286z

%A Trocmé C
%A Marotte H
%A Baillet A
%A Pallot-Prades B
%A Garin J
%A Grange L
%A Miossec P
%A Tebib J
%A Berger F
%A Nissen MJ
%A Juvin R
%A Morel F
%A Gaudin P
%T Apolipoprotein A-I and platelet factor 4 are biomarkers for Infliximab response in rheumatoid arthritis
%0 Journal Article
%D 2008
%J Ann Rheum Dis
%P -
%V 
%N 
%U http://dx.doi.org/10.1136/ard.2008.093153
%8 Jul 29, 2008

%A Chiara Carazzone
%A Reingard Raml
%A Spiros A. Pergantis
%T Nanoelectrospray Ion Mobility Spectrometry Online with Inductively Coupled Plasma-Mass Spectrometry for Sizing Large Proteins, DNA, and Nanoparticles
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 5812-5818
%V 80
%N 15
%U http://dx.doi.org/10.1021/ac7025578

%A Scheper MA
%A Shirtliff ME
%A Meiller TF
%A Peters BM
%A Jabra-Rizk MA
%T Farnesol, a fungal quorum-sensing molecule triggers apoptosis in human oral squamous carcinoma cells
%0 Journal Article
%D 2008
%J Neoplasia
%P 954-63
%V 10
%N 9
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18714396&dopt=Abstract