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%A Seok-Joon Kwon
%A Moo-Yeal Lee
%A Douglas S. Clark
%A Joaquim M. S. Cabral
%A Jonathan S. Dordick
%T On-Chip, Cell-Based Microarray Immunofluorescence Assay for High-Throughput Analysis of Target Proteins
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%A Shujia Dai
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%A Jeff S. Isenberg
%A Lisa A. Ridnour
%A Russell W. Bandle
%A David A. Wink
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%T Comprehensive Characterization of Heat Shock Protein 27 Phosphorylation in Human Endothelial Cells Stimulated by the Microbial Dithiole Thiolutin
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%A Xia Cao and Alexey I. Nesvizhskii
%T Improved Sequence Tag Generation Method for Peptide Identification in Tandem Mass Spectrometry
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%T The SCX/IMAC enrichment approach for global phosphorylation analysis by mass spectrometry
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%A Cédric Bovet
%A Marc Ruff
%A Sylvia Eiler
%A Florence Granger
%A Ryan Wenzel
%A Alexis Nazabal
%A Dino Moras
%A Renato Zenobi
%T Monitoring Ligand Modulation of Protein−Protein Interactions by Mass Spectrometry: Estrogen Receptor α-SRC1
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%J ANALYTICAL CHEMISTRY
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%U http://dx.doi.org/10.1021/ac8007169

%A Xuemei Zhao
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%A Laura S. Lubbers
%A Pete Zafian
%A Jenny J. Li
%A Andy Liaw
%A Qinghua Song
%A Yi Du
%A Robert E. Settlage
%A Gerry J. Hickey
%A Nathan A. Yates
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%T Differential Mass Spectrometry of Rat Plasma Reveals Proteins That Are Responsive to 17β-Estradiol and a Selective Estrogen Receptor Modulator PPT
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%J JOURNAL OF PROTEOME RESEARCH
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%A Christian Preisinger
%A Alex von Kriegsheim
%A David Matallanas
%A Walter Kolch
%T Proteomics and phosphoproteomics for the mapping of cellular signalling networks
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%A Youm YH
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%T Proteomic analysis of androgen-independent growth in low and high passage human LNCaP prostatic adenocarcinoma cells
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%A Xiaoqin Wu
%A Tong Chen
%A Maozhong Zheng
%A Yanmei Chen
%A Nianjun Teng
%A Jozef Šamaj
%A František Baluška
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%T Integrative Proteomic and Cytological Analysis of the Effects of Extracellular Ca2+ Influx on Pinus bungeana Pollen Tube Development
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%J JOURNAL OF PROTEOME RESEARCH
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%A Souza TA
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%T Proteomic identification and functional validation of activins and BMP-11 as candidate novel muscle mass regulators
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%8 2008 Oct 16

%A Katz-Jaffe MG
%A Gardner DK
%T Symposium: innovative techniques in human embryo viability assessment. Can proteomics help to shape the future of human assisted conception?
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%J Reprod Biomed Online
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%A Kai-Yi Wang
%A Szu-An Chuang
%A Po-Chiao Lin
%A Li-Shing Huang
%A Shu-Hua Chen
%A Saib Ouarda
%A Wen-Harn Pan
%A Ping-Ying Lee
%A Chun-Cheng Lin
%A Yu-Ju Chen
%T Multiplexed Immunoassay: Quantitation and Profiling of Serum Biomarkers Using Magnetic Nanoprobes and MALDI-TOF MS
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%J ANALYTICAL CHEMISTRY
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%U http://dx.doi.org/10.1021/ac800354u

%A Olivier Laczka
%A Eva Baldrich
%A Francesc Xavier Muñoz
%A Fco. Javier del Campo
%T Detection of Escherichia coli and Salmonella typhimurium Using Interdigitated Microelectrode Capacitive Immunosensors: The Importance of Transducer Geometry
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%U http://dx.doi.org/10.1021/ac800643k

%A Yawei Xu
%A Lijuan Zhang
%A Haojie Lu
%A Pengyuan Yang
%T Mass Spectrometry Analysis of Phosphopeptides after Peptide Carboxy Group Derivatization
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%A Aleksandra Nita-Lazar
%A Hideshiro Saito-Benz
%A Forest M. White
%T Quantitative phosphoproteomics by mass spectrometry: Past, present, and future
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%A Picotti P
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%A Domon B
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%T A database of mass spectrometric assays for the yeast proteome
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%J Nat Methods
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%A Junjie Ou
%A Tomasz Glawdel
%A Razim Samy
%A Shuwen Wang
%A Zhen Liu
%A Carolyn L. Ren
%A Janusz Pawliszyn
%T Integration of Dialysis Membranes into a Poly(dimethylsiloxane) Microfluidic Chip for Isoelectric Focusing of Proteins Using Whole-Channel Imaging Detection
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%J ANALYTICAL CHEMISTRY
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%A Linda Ly
%A Valerie C. Wasinger
%T Peptide enrichment and protein fractionation using selective electrophoresis
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%J PROTEOMICS
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%U http://dx.doi.org/10.1002/pmic.200701088

%A Dimas K
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%A Anagnostopoulos AK
%A Mahaira L
%A Iliopoulou E
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%A Vougas K
%A Tsangaris GT
%T The proteome profile of two cell lines and their xenografts isolated from a patient with clear cell sarcoma (soft tissue melanoma)
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%J Cancer Genomics Proteomics
%P 175-237
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%A Spurrier B
%A Ramalingam S
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%T Reverse-phase protein lysate microarrays for cell signaling analysis
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%J Nat Protoc
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%A Lima T
%A Auchincloss AH
%A Coudert E
%A Keller G
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%A Rivoire C
%A Bulliard V
%A de Castro E
%A Lachaize C
%A Baratin D
%A Phan I
%A Bougueleret L
%A Bairoch A
%T HAMAP: a database of completely sequenced microbial proteome sets and manually curated microbial protein families in UniProtKB/Swiss-Prot
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%J Nucleic Acids Res
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%8 2008 Oct 11

%A Sherman IW
%T Chapter 26 transcriptomes, proteomes and data mining
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%A Zolla L
%T Proteomics studies reveal important information on small molecule therapeutics: a case study on plasma proteins
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%J Drug Discov Today
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%8 Oct 27, 2008

%A Judit Villén
%A Sean A. Beausoleil
%A Steven P. Gygi
%T Evaluation of the utility of neutral-loss-dependent MS3 strategies in large-scale phosphorylation analysis
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%D 2008
%J PROTEOMICS
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%U http://dx.doi.org/10.1002/pmic.200800283

%A Oh KJ
%A Choi HJ
%A Yoon MS
%A Hwang JH
%A Chang SY
%A Kim YS
%A Han JS
%T Rapid analysis of proteomic biomarkers expressed in human endometrial stromal cells during decidualization
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%J Arch Pharm Res
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%A Tedeschi G
%A Taverna F
%A Negri A
%A Piccinini R
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%A Ronchi S
%A Zecconi A
%T Serological proteome analysis of Staphylococcus aureus isolated from sub-clinical mastitis
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%J Vet Microbiol
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%8 Aug 27, 2008

%A Cheetham SA
%A Smith AL
%A Armstrong SD
%A Beynon RJ
%A Hurst JL
%T Limited variation in the major urinary proteins of laboratory mice
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%J Physiol Behav
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%8 Oct 17, 2008

%A Virginia Espina
%A Kirsten H. Edmiston
%A Michael Heiby
%A Mariaelena Pierobon
%A Manuela Sciro
%A Barbara Merritt
%A Stacey Banks
%A Jianghong Deng
%A Amy J. VanMeter
%A David H. Geho
%A Lucia Pastore
%A Joel Sennesh
%A Emanuel F. Petricoin
%A III
%A Lance A. Liotta
%T A Portrait of Tissue Phosphoprotein Stability in the Clinical Tissue Procurement Process
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%J Mol Cell Proteomics
%P 1998-2018
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%A Cantú MD
%A Mariano AG
%A Palma MS
%A Carrilho E
%A Wulff NA
%T Proteomic Analysis Reveals Suppression of Bark Chitinases and Proteinase Inhibitors in Citrus Plants Affected by the Citrus Sudden Death Disease
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%J Phytopathology
%P 1084-1092
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%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18943454&dopt=Abstract

%A Ali R. Vaezzadeh
%A Céline Hernandez
%A Oscar Vadas
%A Jacques J. M. Deshusses
%A Pierre Lescuyer
%A Frédérique Lisacek
%A Denis F. Hochstrasser
%T pICarver: A Software Tool and Strategy for Peptides Isoelectric Focusing
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%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 4336-4345
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%U http://dx.doi.org/10.1021/pr8002672

%A Andrew R. Jones and Sandra Orchard
%T Minimum Reporting Guidelines for Proteomics Released by the Proteomics Standards Initiative
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%J Mol Cell Proteomics
%P 2067-2068
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%A Paul Drogaris
%A Hugo Wurtele
%A Hiroshi Masumoto
%A Alain Verreault
%A Pierre Thibault
%T Comprehensive Profiling of Histone Modifications Using a Label-Free Approach and Its Applications in Determining Structure−Function Relationships
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%J ANALYTICAL CHEMISTRY
%P 6698-6707
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%U http://dx.doi.org/10.1021/ac800739d

%A Hendrik Neubert
%A Christopher Grace
%A Klaus Rumpel
%A Ian James
%T Assessing Immunogenicity in the Presence of Excess Protein Therapeutic Using Immunoprecipitation and Quantitative Mass Spectrometry
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%D 2008
%J ANALYTICAL CHEMISTRY
%P 6907-6914
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%U http://dx.doi.org/10.1021/ac8005439

%A Nicolai Bache
%A Kasper D. Rand
%A Peter Roepstorff
%A Thomas J. D. Jørgensen
%T Gas-Phase Fragmentation of Peptides by MALDI in-Source Decay with Limited Amide Hydrogen (1H/2H) Scrambling
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%D 2008
%J ANALYTICAL CHEMISTRY
%P 6431-6435
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%U http://dx.doi.org/10.1021/ac800902a

%A Nimesh Bhaskaran
%A Serhiy Souchelnytskyi
%T Systemic analysis of TGF? proteomics revealed involvement of Plag1/CNK1/RASSF1A/Src network in TGF?1-dependent activation of Erk1/2 and cell proliferation
%0 Journal Article
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%J PROTEOMICS
%P 4507-4520
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%U http://dx.doi.org/10.1002/pmic.200700960

%A Neubauer H
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%A Wozny W
%A Schwall GP
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%A Stegmann W
%A Vogel U
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%T Breast cancer proteomics reveals correlation between Estrogen Receptor status and differential phosphorylation of PGRMC1
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%A Shi M
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%T Biomarker discovery in neurodegenerative diseases: A proteomic approach
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%A Verdier-Pinard P
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%A Xiao H
%A Burd B
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%A Horwitz SB
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%T Tubulin proteomics: Towards breaking the code
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%8 Sep 18, 2008

%A Masaru Miyagi and Takashi Nakazawa
%T Determination of pKa Values of Individual Histidine Residues in Proteins Using Mass Spectrometry
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%P 6481-6487
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%U http://dx.doi.org/10.1021/ac8009643

%A Macek B
%A Mann M
%A Olsen JV
%T Global and Site-Specific Quantitative Phosphoproteomics: Principles and Applications
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%T Improved proteome coverage by using iTRAQ labelling and peptide OFFGEL fractionation
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%T Staphylococcus aureus elicits marked alterations in the airway proteome during early pneumonia
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%T Proteome-determined Mycobacterium avium subspecies paratuberculosis-specific proteins: immunogenicity in ovine paratuberculosis
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%T Identification of CDK2 substrates in human cell lysates
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%A Donald L. Elbert
%A Kwasi G. Mawuenyega
%A Evan A. Scott
%A Kristin R. Wildsmith
%A Randall J. Bateman
%T Stable Isotope Labeling Tandem Mass Spectrometry (SILT): Integration with Peptide Identification and Extension to Data-Dependent Scans
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%J JOURNAL OF PROTEOME RESEARCH
%P 4546-4556
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%U http://dx.doi.org/10.1021/pr800386u

%A Brahmananda Reddy Chitteti
%A Feng Tan
%A Hana Mujahid
%A Bryce G. Magee
%A Susan M. Bridges
%A Zhaohua Peng
%T Comparative analysis of proteome differential regulation during cell dedifferentiation in Arabidopsis
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%J PROTEOMICS
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%U http://dx.doi.org/10.1002/pmic.200701149

%A Shui W
%A Sheu L
%A Liu J
%A Smart B
%A Petzold CJ
%A Hsieh TY
%A Pitcher A
%A Keasling JD
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%T Membrane proteomics of phagosomes suggests a connection to autophagy
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%J Proc Natl Acad Sci U S A
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%U http://dx.doi.org/10.1073/pnas.0809218105

%A Cedric E. Bobst
%A Rinat R. Abzalimov
%A Damian Houde
%A Marek Kloczewiak
%A Rohin Mhatre
%A Steven A. Berkowitz
%A Igor A. Kaltashov
%T Detection and Characterization of Altered Conformations of Protein Pharmaceuticals Using Complementary Mass Spectrometry-Based Approaches
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 7473-7481
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%U http://dx.doi.org/10.1021/ac801214x

%A Andreas Schmidt
%A Edina Csaszar
%A Gustav Ammerer
%A Karl Mechtler
%T Enhanced detection and identification of multiply phosphorylated peptides using TiO2 enrichment in combination with MALDI TOF/TOF MS
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%J PROTEOMICS
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%A Trinkle-Mulcahy L
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%T Identifying specific protein interaction partners using quantitative mass spectrometry and bead proteomes
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%A Jongcheol Seo
%A Min-Soo Suh
%A T. Daniel Thangadurai
%A Jinhee Kim
%A Young Ho Rhee
%A Hye-Joo Yoon
%A Seung Koo Shin
%T Mass-Balanced 1H/2H Isotope Dipeptide Tag for Simultaneous Protein Quantitation and Identification
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%U http://dx.doi.org/10.1021/ac801007y

%A Amy J. VanMeter
%A Adrianna S. Rodriguez
%A Elise D. Bowman
%A Jin Jen
%A Curtis C. Harris
%A Jianghong Deng
%A Valerie S. Calvert
%A Alessandra Silvestri
%A Claudia Fredolini
%A Vikas Chandhoke
%A Emanuel F. Petricoin
%A III
%A Lance A. Liotta
%A Virginia Espina
%T Laser Capture Microdissection and Protein Microarray Analysis of Human Non-small Cell Lung Cancer: Differential Epidermal Growth Factor Receptor (EGPR) Phosphorylation Events Associated with Mutated EGFR Compared with Wild Type
%0 Journal Article
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%J Mol Cell Proteomics
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%A Ira Skvortsova
%A Sergej Skvortsov
%A Taras Stasyk
%A Uma Raju
%A Bela-Andre Popper
%A Bernhard Schiestl
%A Elisabeth von Guggenberg
%A Andreas Neher
%A Guenther K. Bonn
%A Lukas A. Huber
%A Peter Lukas
%T Intracellular signaling pathways regulating radioresistance of human prostate carcinoma cells
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%J PROTEOMICS
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%A Eubel H
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%A Taylor NL
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%A Heazlewood JL
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%A Small ID
%A Smith SM
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%T Novel proteins, putative membrane transporters and an integrated metabolic network are revealed by quantitative proteomic analysis of Arabidopsis cell culture peroxisomes
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%J Plant Physiol
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%8 Oct 17, 2008

%A Kim J
%A Bae SS
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%A Park SJ
%T Comparative proteomic analysis of trophozoites versus cysts of Giardia lamblia
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%J Parasitol Res
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%T Phosphoproteomics: unraveling the signaling web
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%J Mol Cell
%P 777-81
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%U http://dx.doi.org/10.1016/j.molcel.2008.09.001

%A Jian Liu
%A Alexandre Erassov
%A Patrick Halina
%A Myra Canete
%A Nguyen Dinh Vo
%A Clement Chung
%A Gerard Cagney
%A Alexandr Ignatchenko
%A Vincent Fong
%A Andrew Emili
%T Sequential Interval Motif Search: Unrestricted Database Surveys of Global MS/MS Data Sets for Detection of Putative Post-Translational Modifications
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
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%U http://dx.doi.org/10.1021/ac8009017

%A David Meierhofer
%A Xiaorong Wang
%A Lan Huang
%A Peter Kaiser
%T Quantitative Analysis of global Ubiquitination in HeLa Cells by Mass Spectrometry
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 4566-4576
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%N 10
%U http://dx.doi.org/10.1021/pr800468j

%A Buhimschi CS
%A Dulay AT
%A Abdel-Razeq S
%A Zhao G
%A Lee S
%A Hodgson EJ
%A Bhandari V
%A Buhimschi IA
%T Fetal inflammatory response in women with proteomic biomarkers characteristic of intra-amniotic inflammation and preterm birth
%0 Journal Article
%D 2008
%J BJOG
%P -
%V 
%N 
%U http://dx.doi.org/10.1111/j.1471-0528.2008.01925.x
%8 Oct 8, 2008

%A Craig D. Wenger
%A Michael T. Boyne II
%A Jonathan T. Ferguson
%A Dana E. Robinson
%A Neil L. Kelleher
%T Versatile Online−Offline Engine for Automated Acquisition of High-Resolution Tandem Mass Spectra
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 8055-8063
%V 80
%N 21
%U http://dx.doi.org/10.1021/ac8010704

%A Shary S
%A Kapich AN
%A Panisko EA
%A Magnuson JK
%A Cullen D
%A Hammel KE
%T DIFFERENTIAL EXPRESSION IN PHANEROCHAETE CHRYSOSPORIUM OF MEMBRANE-ASSOCIATED PROTEINS RELEVANT TO LIGNIN DEGRADATION
%0 Journal Article
%D 2008 Oct 10
%J Appl Environ Microbiol
%P -
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%U http://dx.doi.org/10.1128/AEM.01997-08
%8 2008 Oct 10

%A Johanna-Gabriela Walter
%A Öznur Kökpinar
%A Karl Friehs
%A Frank Stahl
%A Thomas Scheper
%T Systematic Investigation of Optimal Aptamer Immobilization for Protein−Microarray Applications
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 7372-7378
%V 80
%N 19
%U http://dx.doi.org/10.1021/ac801081v

%A Yeh CH
%A Huang HH
%A Chang TC
%A Lin HP
%A Lin YC
%T Using an electro-microchip, a nanogold probe, and silver enhancement in an immunoassay
%0 Journal Article
%D 2008
%J Biosens Bioelectron
%P -
%V 
%N 
%U http://dx.doi.org/10.1016/j.bios.2008.08.039
%8 Sep 2, 2008

%A Bethny Morrissey and Kevin M. Downard
%T Kinetics of Antigen−Antibody Interactions Employing a MALDI Mass Spectrometry Immunoassay
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 7720-7726
%V 80
%N 20
%U http://dx.doi.org/10.1021/ac801069q

%A Liao L
%A Park SK
%A Xu T
%A Vanderklish P
%A Yates JR 3rd
%T Quantitative proteomic analysis of primary neurons reveals diverse changes in synaptic protein content in fmr1 knockout mice
%0 Journal Article
%D 2008
%J Proc Natl Acad Sci U S A
%P 15281-6
%V 105
%N 40
%U http://dx.doi.org/10.1073/pnas.0804678105

%A Benjamin A. Garcia
%A C. Eric Thomas
%A Neil L. Kelleher
%A Craig A. Mizzen
%T Tissue-Specific Expression and Post-Translational Modification of Histone H3 Variants
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 4225-4236
%V 7
%N 10
%U http://dx.doi.org/10.1021/pr800044q

%A Luciana Herve-Jimenez
%A Isabelle Guillouard
%A Eric Guedon
%A Céline Gautier
%A Samira Boudebbouze
%A Pascal Hols
%A Véronique Monnet
%A Françoise Rul
%A Emmanuelle Maguin
%T Physiology of Streptococcus thermophilus during the late stage of milk fermentation with special regard to sulfur amino-acid metabolism
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 4273-4286
%V 8
%N 20
%U http://dx.doi.org/10.1002/pmic.200700489

%A Yutaka Kyono
%A Naoyuki Sugiyama
%A Koshi Imami
%A Masaru Tomita
%A Yasushi Ishihama
%T Successive and Selective Release of Phosphorylated Peptides Captured by Hydroxy Acid-Modified Metal Oxide Chromatography
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 4585-4593
%V 7
%N 10
%U http://dx.doi.org/10.1021/pr800305y

%A Hendrickson EL
%A Lamont RJ
%A Hackett M
%T Tools for Interpreting Large-scale Protein Profiling in Microbiology
%0 Journal Article
%D 2008
%J J Dent Res
%P 1004-15
%V 87
%N 11
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18946006&dopt=Abstract

%A Wiśniewski JR
%T Mass spectrometry-based proteomics: principles, perspectives, and challenges
%0 Journal Article
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%J Arch Pathol Lab Med
%P 1566-9
%V 132
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%A Langenfeld E
%A Meyer HE
%A Marcus K
%T Quantitative analysis of highly homologous proteins: the challenge of assaying the "CYP-ome" by mass spectrometry
%0 Journal Article
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%J Anal Bioanal Chem
%P 1123-34
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%U http://dx.doi.org/10.1007/s00216-008-2407-z

%A Mou Z
%A He Y
%A Wu Y
%T Immunoproteomics to identify tumor-associated antigens eliciting humoral response
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%J Cancer Lett
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%8 Oct 16, 2008

%A Akuffo EL
%A Davis JB
%A Fox SM
%A Gloger IS
%A Hosford D
%A Kinsey EE
%A Jones NA
%A Nock CM
%A Roses AD
%A Saunders AM
%A Mark Skehel J
%A Smith MA
%A Cutler P
%T The discovery and early validation of novel plasma biomarkers in mild-to-moderate Alzheimer's disease patients responding to treatment with rosiglitazone
%0 Journal Article
%D 2008
%J Biomarkers
%P 618-36
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%A Sun Q
%A Zybailov B
%A Majeran W
%A Friso G
%A Olinares PD
%A van Wijk KJ
%T PPDB, the Plant Proteomics Database at Cornell
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%J Nucleic Acids Res
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%8 Oct 2, 2008

%A Zhongfa Liu
%A Yilong Zhang
%A Yousheng Frank Hua
%A Joseph M. Covey
%A Doris M. Benbrook
%A Kenneth K. Chan
%T Metabolism of a sulfur-containing heteroarotionoid antitumor agent, SHetA2, using liquid chromatography/tandem mass spectrometry
%0 Journal Article
%D 2008
%J Rapid Communications in Mass Spectrometry
%P 3371-3381
%V 22
%N 21
%U http://dx.doi.org/10.1002/rcm.3744

%A Stephane Decramer
%A Anne Gonzalez de Peredo
%A Benjamin Breuil
%A Harald Mischak
%A Bernard Monsarrat
%A Jean-Loup Bascands
%A Joost P. Schanstra
%T Urine in Clinical Proteomics
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 1850-1862
%V 7
%N 10
%U http://www.mcponline.org/cgi/content/abstract/7/10/1850?etoc

%A Martin Eisenacher
%A Tanja Hardt
%A Lennart Martens
%A Jari Häkkinen
%A Rolf Apweiler
%A Michael Hamacher
%A Helmut E. Meyer
%A Christian Stephan
%T Proteomics Data Collection - 3rd ProDaC Workshop April 22nd 2008, Toledo, Spain
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 4163-4167
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%N 20
%U http://dx.doi.org/10.1002/pmic.200800515

%A Thiemo B. Schreiber
%A Nina Mäusbacher
%A Susanne B. Breitkopf
%A Kathrin Grundner-Culemann
%A Henrik Daub
%T Quantitative phosphoproteomics - an emerging key technology in signal-transduction research
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 4416-4432
%V 8
%N 21
%U http://dx.doi.org/10.1002/pmic.200800132

%A Aden N
%A Shiwen X
%A Aden D
%A Black C
%A Nuttall A
%A Denton CP
%A Leask A
%A Abraham D
%A Stratton R
%T Proteomic analysis of scleroderma lesional skin reveals activated wound healing phenotype of epidermal cell layer
%0 Journal Article
%D 2008
%J Rheumatology (Oxford)
%P -
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%8 Oct 1, 2008

%A Lange V
%A Picotti P
%A Domon B
%A Aebersold R
%T Selected reaction monitoring for quantitative proteomics: a tutorial
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%A Heck AJ
%T Native mass spectrometry: a bridge between interactomics and structural biology
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%J Nat Methods
%P 927-33
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%N 11
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18974734&dopt=Abstract

%A Matthew D. Krasowski
%A Erica J. Reschly
%A Sean Ekins
%T Intrinsic Disorder in Nuclear Hormone Receptors
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 4359-4372
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%N 10
%U http://dx.doi.org/10.1021/pr8003024

%A Iwadate Y
%T Clinical proteomics in cancer research-promises and limitations of current two-dimensional gel electrophoresis
%0 Journal Article
%D 2008
%J Curr Med Chem
%P 2393-400
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%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18855668&dopt=Abstract

%A John M. Koomen
%A Eric B. Haura
%A Gerold Bepler
%A Rebecca Sutphen
%A Elizabeth R. Remily-Wood
%A Kaaron Benson
%A Mohamad Hussein
%A Lori A. Hazlehurst
%A Timothy J. Yeatman
%A Lynne T. Hildreth
%A Thomas A. Sellers
%A Paul B. Jacobsen
%A David A. Fenstermacher
%A William S.
%T Proteomic Contributions to Personalized Cancer Care
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 1780-1794
%V 7
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%U http://www.mcponline.org/cgi/content/abstract/7/10/1780?etoc

%A Christin Christin
%A Age K. Smilde
%A Huub C. J. Hoefsloot
%A Frank Suits
%A Rainer Bischoff
%A Peter L. Horvatovich
%T Optimized Time Alignment Algorithm for LC−MS Data: Correlation Optimized Warping Using Component Detection Algorithm-Selected Mass Chromatograms
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 7012-7021
%V 80
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%U http://dx.doi.org/10.1021/ac800920h

%A Steve M. M. Sweet
%A Faraz K. Mardakheh
%A Kevin J. P. Ryan
%A Amy J. Langton
%A John K. Heath
%A Helen J. Cooper
%T Targeted Online Liquid Chromatography Electron Capture Dissociation Mass Spectrometry for the Localization of Sites of in Vivo Phosphorylation in Human Sprouty2
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 6650-6657
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%U http://dx.doi.org/10.1021/ac800963a

%A Wolfgang Hoehenwarter
%A Joost T. van Dongen
%A Stefanie Wienkoop
%A Matthias Steinfath
%A Jan Hummel
%A Alexander Erban
%A Ronan Sulpice
%A Babette Regierer
%A Joachim Kopka
%A Peter Geigenberger
%A Wolfram Weckwerth
%T A rapid approach for phenotype-screening and database independent detection of cSNP/protein polymorphism using mass accuracy precursor alignment
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 4214-4225
%V 8
%N 20
%U http://dx.doi.org/10.1002/pmic.200701047

%A Ambrosius P. L. Snijders
%A Sayampong Pongdam
%A Stan J. Lambert
%A Christopher M. Wood
%A John P. Baldwin
%A Mark J. Dickman
%T Characterization of Post-Translational Modifications of the Linker Histones H1 and H5 from Chicken Erythrocytes Using Mass Spectrometry
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 4326-4335
%V 7
%N 10
%U http://dx.doi.org/10.1021/pr800260a

%A Kondo T
%T Tissue proteomics for cancer biomarker development - Laser microdissection and 2D-DIGE -
%0 Journal Article
%D 2008
%J BMB Rep
%P 626-34
%V 41
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%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18823585&dopt=Abstract

%A José María Gutiérrez
%A Libia Sanz
%A José Escolano
%A Julián Fernández
%A Bruno Lomonte
%A Yamileth Angulo
%A Alexandra Rucavado
%A David A. Warrell
%A Juan J. Calvete
%T Snake Venomics of the Lesser Antillean Pit Vipers Bothrops caribbaeus and Bothrops lanceolatus: Correlation with Toxicological Activities and Immunoreactivity of a Heterologous Antivenom
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 4396-4408
%V 7
%N 10
%U http://dx.doi.org/10.1021/pr8003826

%A Shi-Jian Ding
%A Yingchun Wang
%A Jon M. Jacobs
%A Wei-Jun Qian
%A Feng Yang
%A Aleksey V. Tolmachev
%A Xiuxia Du
%A Wei Wang
%A Ronald J. Moore
%A Matthew E. Monroe
%A Samuel O. Purvine
%A Katrina Waters
%A Tyler H. Heibeck
%A Joshua N. Adkins
%A David G. Camp II
%A Richard L. Klemke
%T Quantitative Phosphoproteome Analysis of Lysophosphatidic Acid Induced Chemotaxis Applying Dual-Step 18O Labeling Coupled with Immobilized Metal-Ion Affinity Chromatography
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 4215-4224
%V 7
%N 10
%U http://dx.doi.org/10.1021/pr7007785

%A Jinling Xu
%A Khiam Aik Khor
%A Jianjun Sui
%A Jianhua Zhang
%A Tuan Lin Tan
%A Wei Ning Chen
%T Comparative proteomics profile of osteoblasts cultured on dissimilar hydroxyapatite biomaterials: An iTRAQ-coupled 2-D LC-MS/MS analysis
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 4249-4258
%V 8
%N 20
%U http://dx.doi.org/10.1002/pmic.200800103

%A Rodríguez-Pérez MA
%A Medina-Aunon A
%A Encarnación-Guevara SM
%A Bernal-Silvia S
%A Barrera-Saldaña H
%A Albar-Ramírez JP
%T In silico analysis of protein neoplastic biomarkers for cervix and uterine cancer
%0 Journal Article
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%J Clin Transl Oncol
%P 604-17
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%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18940741&dopt=Abstract

%A Sergio de la Fuente van Bentem
%A Wieslawa I. Mentzen
%A Alberto de la Fuente
%A Heribert Hirt
%T Towards functional phosphoproteomics by mapping differential phosphorylation events in signaling networks
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 4453-4465
%V 8
%N 21
%U http://dx.doi.org/10.1002/pmic.200800175

%A Brumbaugh J
%A Phanstiel D
%A Coon JJ
%T Unraveling the histone's potential: A proteomics perspective
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%J Epigenetics
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%8 2008 Sep 17

%A Minagar A
%A Steven Alexander J
%A Kelley RE
%A Harper M
%A Jennings MH
%T Proteomic Analysis of Human Cerebral Endothelial Cells Activated by Glutamate/MK-801: Significance in Ischemic Stroke Injury
%0 Journal Article
%D 2008
%J J Mol Neurosci
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%8 Oct 9, 2008

%A Dori-Bachash M
%A Dassa B
%A Pietrokovski S
%A Jurkevitch E
%T Proteome-based comparative analyses of growth stages reveal new cell-cycle dependent functions in the predatory bacterium Bdellovibrio bacteriovorus
%0 Journal Article
%D 2008
%J Appl Environ Microbiol
%P -
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%8 Oct 3, 2008

%A Gordon R. Nicol
%A Mark Han
%A Jun Kim
%A Charles E. Birse
%A Erin Brand
%A Anh Nguyen
%A Mehdi Mesri
%A William FitzHugh
%A Patrick Kaminker
%A Paul A. Moore
%A Steven M. Ruben
%A Tao He
%T Use of an Immunoaffinity-Mass Spectrometry-based Approach for the Quantification of Protein Biomarkers from Serum Samples of Lung Cancer Patients
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 1974-1982
%V 7
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%U http://www.mcponline.org/cgi/content/abstract/7/10/1974?etoc

%A Ioan Marginean
%A Ryan T. Kelly
%A David C. Prior
%A Brian L. LaMarche
%A Keqi Tang
%A Richard D. Smith
%T Analytical Characterization of the Electrospray Ion Source in the Nanoflow Regime
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 6573-6579
%V 80
%N 17
%U http://dx.doi.org/10.1021/ac800683s

%A Raghothama Chaerkady
%A H. C. Harsha
%A Anuradha Nalli
%A Marjan Gucek
%A Perumal Vivekanandan
%A Javed Akhtar
%A Robert N. Cole
%A Jessica Simmers
%A Richard D. Schulick
%A Sujay Singh
%A Michael Torbenson
%A Akhilesh Pandey
%A Paul J. Thuluvath
%T A Quantitative Proteomic Approach for Identification of Potential Biomarkers in Hepatocellular Carcinoma
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 4289-4298
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%U http://dx.doi.org/10.1021/pr800197z

%A Kattah MG
%A Coller J
%A Cheung RK
%A Oshidary N
%A Utz PJ
%T HIT: a versatile proteomics platform for multianalyte phenotyping of cytokines, intracellular proteins and surface molecules
%0 Journal Article
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%J Nat Med
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%8 2008 Oct 12

%A Gnad F
%A Oroshi M
%A Birney E
%A Mann M
%T MAPU 2.0: high-accuracy proteomes mapped to genomes
%0 Journal Article
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%J Nucleic Acids Res
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%8 Oct 23, 2008

%A Smaldone MC
%A Vodovotz Y
%A Tyagi V
%A Barclay D
%A Philips BJ
%A Yoshimura N
%A Chancellor MB
%A Tyagi P
%T Multiplex Analysis of Urinary Cytokine Levels in Rat Model of Cyclophosphamide-induced Cystitis
%0 Journal Article
%D 2008 Oct 8
%J Urology
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%8 2008 Oct 8

%A Wei-Jun Qian
%A David T. Kaleta
%A Brianne O. Petritis
%A Hongliang Jiang
%A Tao Liu
%A Xu Zhang
%A Heather M. Mottaz
%A Susan M. Varnum
%A David G. Camp
%A II
%A Lei Huang
%A Xiangming Fang
%A Wei-Wei Zhang
%A Richard D. Smith
%T Enhanced Detection of Low Abundance Human Plasma Proteins Using a Tandem IgY12-SuperMix Immunoaffinity Separation Strategy
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 1963-1973
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%A Popper HH
%A Kothmaier H
%T Proteomics--tissue and protein microarrays and antibody array: what information is provided?
%0 Journal Article
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%J Arch Pathol Lab Med
%P 1570-2
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%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18834212&dopt=Abstract

%A Jishan Li
%A Jianping Ge
%A Yadong Yin
%A Wenwan Zhong
%T Multiplexed Affinity-Based Protein Complex Purification
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 7068-7074
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%U http://dx.doi.org/10.1021/ac801251y

%A Andrew C. Barton
%A Frank Davis
%A Séamus P. J. Higson
%T Labeless Immunosensor Assay for Prostate Specific Antigen with Picogram per Milliliter Limits of Detection Based upon an ac Impedance Protocol
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 6198-6205
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%U http://dx.doi.org/10.1021/ac800491m

%A Weiss S
%A Carapito C
%A Cleiss J
%A Koechler S
%A Turlin E
%A Coppee JY
%A Heymann M
%A Kugler V
%A Stauffert M
%A Cruveiller S
%A Medigue C
%A Van Dorsselaer A
%A Bertin PN
%A Arsene-Ploetze F
%T Enhanced structural and functional genome elucidation of the arsenite-oxidizing strain Herminiimonas arsenicoxydans by proteomics data
%0 Journal Article
%D 2008 Sep 25
%J Biochimie
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%8 2008 Sep 25

%A Adam Burgener
%A Julie Boutilier
%A Charles Wachihi
%A Joshua Kimani
%A Michael Carpenter
%A Garrett Westmacott
%A Keding Cheng
%A Terry B. Ball
%A Francis Plummer
%T Identification of Differentially Expressed Proteins in the Cervical Mucosa of HIV-1-Resistant Sex Workers
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 4446-4454
%V 7
%N 10
%U http://dx.doi.org/10.1021/pr800406r

%A Mohammadreza Shariatgorji
%A Juan Astorga-Wells
%A Hans Jornvall
%A Leopold L. Ilag
%T Microfluidic Electrocapture-Assisted Mass Spectrometry of Membrane-Associated Polypeptides
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 7116-7120
%V 80
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%U http://dx.doi.org/10.1021/ac800877k

%A Bertile F
%A Raclot T
%T Proteomics can help to gain insights into metabolic disorders according to body reserve availability
%0 Journal Article
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%J Curr Med Chem
%P 2545-58
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%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18855678&dopt=Abstract

%A Ivory X. Peng
%A Rachel R. Ogorzalek Loo
%A Jentaie Shiea
%A Joseph A. Loo
%T Reactive-Electrospray-Assisted Laser Desorption/Ionization for Characterization of Peptides and Proteins
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 6995-7003
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%U http://dx.doi.org/10.1021/ac800870c

%A Godat B
%A Engel L
%A Betz NA
%A Johnson TM
%T Methods for the purification of HQ-tagged proteins
%0 Journal Article
%D 2008
%J Methods Mol Biol
%P 151-68
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%A Candong Wei
%A Junping Peng
%A Zhaohui Xiong
%A Jian Yang
%A Jing Wang
%A Qi Jin
%T Subproteomic tools to increase genome annotation complexity
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 4209-4213
%V 8
%N 20
%U http://dx.doi.org/10.1002/pmic.200800226

%A Swaney DL
%A McAlister GC
%A Coon JJ
%T Decision tree-driven tandem mass spectrometry for shotgun proteomics
%0 Journal Article
%D 2008
%J Nat Methods
%P 959-64
%V 5
%N 11
%U http://dx.doi.org/10.1038/nmeth.1260

%A Subash C. B. Gopinath
%A Koichi Awazu
%A Makoto Fujimaki
%A Katsuaki Sugimoto
%A Yoshimichi Ohki
%A Tetsuro Komatsubara
%A Junji Tominaga
%A Kailash C. Gupta
%A Penmetcha K. R. Kumar
%T Influence of Nanometric Holes on the Sensitivity of a Waveguide-Mode Sensor: Label-Free Nanosensor for the Analysis of RNA Aptamer−Ligand Interactions
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 6602-6609
%V 80
%N 17
%U http://dx.doi.org/10.1021/ac800767s

%A Bringans S
%A Kendrick TS
%A Lui J
%A Lipscombe R
%T A comparative study of the accuracy of several de novo sequencing software packages for datasets derived by matrix-assisted laser desorption/ionisation and electrospray
%0 Journal Article
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%J Rapid Commun Mass Spectrom
%P 3450-3454
%V 22
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%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18837480&dopt=Abstract

%A Yaozhou Zhang
%A Zhengbing Lv
%A Jian Chen
%A Qin Chen
%A Yanping Quan
%A Lingyin Kong
%A Haihua Zhang
%A Si Li
%A Qingliang Zheng
%A Jianqing Chen
%A Zuoming Nie
%A Jiang Wang
%A Yongfeng Jin
%A Xiangfu Wu
%T A novel method for isolation of membrane proteins: A baculovirus surface display system
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 4178-4185
%V 8
%N 20
%U http://dx.doi.org/10.1002/pmic.200800133

%A Yoshimura F
%A Murakami Y
%A Nishikawa K
%A Hasegawa Y
%A Kawaminami S
%T Surface components of Porphyromonas gingivalis
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%D 2008
%J J Periodontal Res
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%U http://dx.doi.org/10.1111/j.1600-0765.2008.01135.x
%8 Oct 7, 2008

%A Thibault Chaze
%A Bruno Meunier
%A Christophe Chambon
%A Catherine Jurie
%A Brigitte Picard
%T In vivo proteome dynamics during early bovine myogenesis
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 4236-4248
%V 8
%N 20
%U http://dx.doi.org/10.1002/pmic.200701101

%A Lasonder E
%A Janse CJ
%A van Gemert GJ
%A Mair GR
%A Vermunt AM
%A Douradinha BG
%A van Noort V
%A Huynen MA
%A Luty AJ
%A Kroeze H
%A Khan SM
%A Sauerwein RW
%A Waters AP
%A Mann M
%A Stunnenberg HG
%T Proteomic profiling of Plasmodium sporozoite maturation identifies new proteins essential for parasite development and infectivity
%0 Journal Article
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%A Iliuk A
%A Galan J
%A Tao WA
%T Playing tag with quantitative proteomics
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%D 2008
%J Anal Bioanal Chem
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%U http://dx.doi.org/10.1007/s00216-008-2386-0
%8 Oct 10, 2008

%A Wilson R
%A Belluoccio D
%A Little CB
%A Fosang AJ
%A Bateman JF
%T Proteomic characterization of mouse cartilage degradation in vitro
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%J Arthritis Rheum
%P 3120-3131
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%A Vlad Zabrouskov
%A Ying Ge
%A Jae Schwartz
%A Jeffery W. Walker
%T Unraveling Molecular Complexity of Phosphorylated Human Cardiac Troponin I by Top Down Electron Capture Dissociation/Electron Transfer Dissociation Mass Spectrometry
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%D 2008
%J Mol Cell Proteomics
%P 1838-1849
%V 7
%N 10
%U http://www.mcponline.org/cgi/content/abstract/7/10/1838?etoc

%A Song D
%A Chaerkady R
%A Tan AC
%A Garcia-Garcia E
%A Nalli A
%A Suarez-Gauthier A
%A Lopez-Rios F
%A Zhang XF
%A Solomon A
%A Tong J
%A Read M
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%A Pandey A
%A Hidalgo M
%T Antitumor activity and molecular effects of the novel heat shock protein 90 inhibitor, IPI-504, in pancreatic cancer
%0 Journal Article
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%J Mol Cancer Ther
%P 3275-84
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%U http://dx.doi.org/10.1158/1535-7163.MCT-08-0508

%A Gray CM
%A Mlotshwa M
%A Riou C
%A Mathebula T
%A de Assis Rosa D
%A Mashishi T
%A Seoighe C
%A Ngandu N
%A van Loggerenberg F
%A Morris L
%A Mlisana K
%A Williamson C
%A Karim SA
%T HIV-specific IFN{gamma}-ELISPOT Responses targeting specific regions of the proteome during Primary Subtype C Infection are poor Predictors of the Course of Viraemia and Set Point
%0 Journal Article
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%J J Virol
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%8 Oct 22, 2008

%A Hana Vaisocherová
%A Wei Yang
%A Zheng Zhang
%A Zhiqiang Cao
%A Gang Cheng
%A Marek Piliarik
%A Jiří Homola
%A Shaoyi Jiang
%T Ultralow Fouling and Functionalizable Surface Chemistry Based on a Zwitterionic Polymer Enabling Sensitive and Specific Protein Detection in Undiluted Blood Plasma
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 7894-7901
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%U http://dx.doi.org/10.1021/ac8015888

%A Wedholm A
%A Møller HS
%A Stensballe A
%A Lindmark-MÃ¥nsson H
%A Karlsson AH
%A Andersson R
%A Andrén A
%A Larsen LB
%T Effect of minor milk proteins in chymosin separated whey and casein fractions on cheese yield as determined by proteomics and multivariate data analysis
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%J J Dairy Sci
%P 3787-97
%V 91
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%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18832200&dopt=Abstract

%A Sachs AN
%A Pisitkun T
%A Hoffert JD
%A Yu MJ
%A Knepper MA
%T LC-MS/MS Analysis of Differential Centrifugation Fractions from Native Inner Medullary Collecting Duct of Rat
%0 Journal Article
%D 2008 Oct 15
%J Am J Physiol Renal Physiol
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%8 2008 Oct 15

%A Duan Z
%A Yan X
%A Cao R
%A Liu Z
%A Wang X
%A Liang S
%T Proteomic analysis of Latrodectus tredecimguttatus venom for uncovering potential latrodectism-related proteins
%0 Journal Article
%D 2008
%J J Biochem Mol Toxicol
%P 328-336
%V 22
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%A Cuiping Pan
%A Florian Gnad
%A Jesper V. Olsen
%A Matthias Mann
%T Quantitative phosphoproteome analysis of a mouse liver cell line reveals specificity of phosphatase inhibitors
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 4534-4546
%V 8
%N 21
%U http://dx.doi.org/10.1002/pmic.200800105

%A Lashanda N. Waller
%A Kevin Shores
%A Daniel R. Knapp
%T Shotgun Proteomic Analysis of Cerebrospinal Fluid Using Off-Gel Electrophoresis as the First-Dimension Separation
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 4577-4584
%V 7
%N 10
%U http://dx.doi.org/10.1021/pr8001518

%A Voigt B
%A Antelmann H
%A Albrecht D
%A Ehrenreich A
%A Maurer KH
%A Evers S
%A Gottschalk G
%A van Dijl JM
%A Schweder T
%A Hecker M
%T Cell physiology and protein secretion of Bacillus licheniformis compared to Bacillus subtilis
%0 Journal Article
%D 2009
%J J Mol Microbiol Biotechnol
%P 53-68
%V 16
%N 1-2
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18957862&dopt=Abstract

%A Mialy F. Ramaroson
%A James Ruby
%A Michael B. Goshe
%A Hsiao-Ching Liu
%T Changes in the Gallus gallus Proteome Induced by Marek’s Disease Virus
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 4346-4358
%V 7
%N 10
%U http://dx.doi.org/10.1021/pr800268h

%A Ciara A. McManus
%A Jane A. English
%T 1st Irish Proteomics Workshop April 17th 2008, University College Dublin, Conway Institute, Dublin, Ireland
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 4160-4162
%V 8
%N 20
%U http://dx.doi.org/10.1002/pmic.200800516

%A Rivera-Monroy Z
%A Bonn GK
%A Guttman A
%T Fluorescent isotope-coded affinity tag (FCAT). I: Design and synthesis
%0 Journal Article
%D 2008
%J Bioorg Chem
%P 299-311
%V 36
%N 6
%U http://dx.doi.org/10.1016/j.bioorg.2008.08.005

%A Fleissig Y
%A Deutsch O
%A Reichenberg E
%A Redlich M
%A Zaks B
%A Palmon A
%A Aframian D
%T Different proteomic protein patterns in saliva of Sjögren's syndrome patients
%0 Journal Article
%D 2008
%J Oral Dis
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%8 Oct 9, 2008

%A Hart SR
%A Lau KW
%A Hao Z
%A Broadhead R
%A Portman N
%A Hühmer A
%A Gull K
%A McKean PG
%A Hubbard SJ
%A Gaskell SJ
%T Analysis of the Trypanosome Flagellar Proteome Using a Combined Electron Transfer/Collisionally Activated Dissociation Strategy
%0 Journal Article
%D 2008
%J J Am Soc Mass Spectrom
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%8 Sep 3, 2008

%A Zhi-Bin Ning
%A Qing-Run Li
%A Jie Dai
%A Rong-Xia Li
%A Chia-Hui Shieh
%A Rong Zeng
%T Fractionation of Complex Protein Mixture by Virtual Three-Dimensional Liquid Chromatography Based on Combined pH and Salt Steps
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 4525-4537
%V 7
%N 10
%U http://dx.doi.org/10.1021/pr800318j

%A Stephen F. Kingsmore
%A Neil Kennedy
%A Henry L. Halliday
%A Jennifer C. Van Velkinburgh
%A Shengiang Zhong
%A Vanessa Gabriel
%A Judith Grant
%A William D. Beavis
%A Velizar T. Tchernev
%A Lorah Perlee
%A Serguei Lejnine
%A Brian Grimwade
%A Martin Sorette
%A J. David M. Edga
%T Identification of Diagnostic Biomarkers for Infection in Premature Neonates
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 1863-1875
%V 7
%N 10
%U http://www.mcponline.org/cgi/content/abstract/7/10/1863?etoc

%A Peter Brechlin
%A Olaf Jahn
%A Petra Steinacker
%A Lukas Cepek
%A Hartmut Kratzin
%A Stefan Lehnert
%A Sarah Jesse
%A Brit Mollenhauer
%A Hans A. Kretzschmar
%A Jens Wiltfang
%A Markus Otto
%T Cerebrospinal fluid-optimized two-dimensional difference gel electrophoresis (2-D DIGE) facilitates the differential diagnosis of Creutzfeldt-Jakob disease
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 4357-4366
%V 8
%N 20
%U http://dx.doi.org/10.1002/pmic.200800375

%A Roddy M
%A Fox TP
%A McFadden JP
%A Nakamura K
%A Rio-Tsonis KD
%A Tsonis PA
%T A comparative proteomic analysis during urodele lens regeneration
%0 Journal Article
%D 2008 Oct 9
%J Biochem Biophys Res Commun
%P -
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%8 2008 Oct 9

%A Byrne GW
%A Stalboerger PG
%A Davila E
%A Heppelmann CJ
%A Gazi MH
%A McGregor HC
%A LaBreche PT
%A Davies WR
%A Rao VP
%A Oi K
%A Tazelaar HD
%A Logan JS
%A McGregor CG
%T Proteomic identification of non-Gal antibody targets after pig-to-primate cardiac xenotransplantation
%0 Journal Article
%D 2008
%J Xenotransplantation
%P 268-76
%V 15
%N 4
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18957049&dopt=Abstract

%A XiaoChun Xu
%A Dong Yu
%A Wei Fang
%A Yushao Cheng
%A Ziliang Qian
%A WenCong Lu
%A Yudong Cai
%A Kaiyan Feng
%T Prediction of Peptidase Category Based on Functional Domain Composition
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 4521-4524
%V 7
%N 10
%U http://dx.doi.org/10.1021/pr800292w

%A Hammami R
%A Ben Hamida J
%A Vergoten G
%A Fliss I
%T PhytAMP: a database dedicated to antimicrobial plant peptides
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%J Nucleic Acids Res
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%8 Oct 4, 2008

%A Dueckershoff K
%A Mueller S
%A Mueller MJ
%A Reinders J
%T Impact of cyclopentenone-oxylipins on the proteome of Arabidopsis thaliana
%0 Journal Article
%D 2008 Sep 20
%J Biochim Biophys Acta
%P -
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%8 2008 Sep 20

%A Samïrah Perally
%A E. James LaCourse
%A Alison M. Campbell
%A Peter M. Brophy
%T Heme Transport and Detoxification in Nematodes: Subproteomics Evidence of Differential Role of Glutathione Transferases
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 4557-4565
%V 7
%N 10
%U http://dx.doi.org/10.1021/pr800395x

%A Haleh Safavi
%A Nicolle Correa
%A Wei Xiong
%A Anindya Roy
%A Tülay Adali
%A Valeriy R. Korostyshevskiy
%A Carol C. Whisnant
%A Françoise Seillier-Moiseiwitsch
%T Independent component analysis of 2-D electrophoresis gels
%0 Journal Article
%D 2008
%J ELECTROPHORESIS
%P 4017-4026
%V 29
%N 19
%U http://dx.doi.org/10.1002/elps.200800028

%A Anne-Sofie Schrohl
%A Sidse Wurtz
%A Elise Kohn
%A Rosamonde E. Banks
%A Hans Jorgen Nielsen
%A Fred C. G. J. Sweep
%A Nils Brunner
%T Banking of Biological Fluids for Studies of Disease-associated Protein Biomarkers
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 2061-2066
%V 7
%N 10
%U http://www.mcponline.org/cgi/content/abstract/7/10/2061?etoc

%A Lihong Du
%A Robert L. White
%T Reducing glycerophosphocholine lipid matrix interference effects in biological fluid assays by using high-turbulence liquid chromatography
%0 Journal Article
%D 2008
%J Rapid Communications in Mass Spectrometry
%P 3362-3370
%V 22
%N 21
%U http://dx.doi.org/10.1002/rcm.3747

%A Chan QW
%A Foster LJ
%T Changes in protein expression during honey bee larval development
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%A Gury�a V
%A Kieffer-Jaquinod S
%A Garin J
%A Masselon CD
%T Prospects for monolithic nano-LC columns in shotgun proteomics
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%J Anal Bioanal Chem
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%U http://dx.doi.org/10.1007/s00216-008-2433-x
%8 Oct 24, 2008

%A Jennifer Griffiths
%T Secondary Ion Mass Spectrometry
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 7194-7197
%V 80
%N 19
%U http://dx.doi.org/10.1021/ac801528u

%A Yanfei Wang
%A Xiaoping Ao
%A Huy Vuong
%A Meghana Konanur
%A Fred R. Miller
%A Steve Goodison
%A David M. Lubman
%T Membrane Glycoproteins Associated with Breast Tumor Cell Progression Identified by a Lectin Affinity Approach
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 4313-4325
%V 7
%N 10
%U http://dx.doi.org/10.1021/pr8002547

%A Prahlad K. Rao
%A G. Marcela Rodriguez
%A Issar Smith
%A Qingbo Li
%T Protein Dynamics in Iron-Starved Mycobacterium tuberculosis Revealed by Turnover and Abundance Measurement Using Hybrid-Linear Ion Trap-Fourier Transform Mass Spectrometry
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 6860-6869
%V 80
%N 18
%U http://dx.doi.org/10.1021/ac800288t

%A Caroline N. Jones
%A Ji Youn Lee
%A James Zhu
%A Gulnaz Stybayeva
%A Erlan Ramanculov
%A Mark A. Zern
%A Alexander Revzin
%T Multifunctional Protein Microarrays for Cultivation of Cells and Immunodetection of Secreted Cellular Products
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 6351-6357
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%N 16
%U http://dx.doi.org/10.1021/ac8007626

%A Orimo T
%A Ojima H
%A Hiraoka N
%A Saito S
%A Kosuge T
%A Kakisaka T
%A Yokoo H
%A Nakanishi K
%A Kamiyama T
%A Todo S
%A Hirohashi S
%A Kondo T
%T Proteomic profiling reveals the prognostic value of adenomatous polyposis coli-end-binding protein 1 in hepatocellular carcinoma
%0 Journal Article
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%J Hepatology
%P -
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%8 Jul 28, 2008

%A Xudong Yao
%A Pamela Diego
%A Alexis A. Ramos
%A Yu Shi
%T Averagine-Scaling Analysis and Fragment Ion Mass Defect Labeling in Peptide Mass Spectrometry
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 7383-7391
%V 80
%N 19
%U http://dx.doi.org/10.1021/ac801096e

%A Li W
%A Li JF
%A Qu Y
%A Chen XH
%A Qin JM
%A Gu QL
%A Yan M
%A Zhu ZG
%A Liu BY
%T Comparative proteomics analysis of human gastric cancer
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%D 2008
%J World J Gastroenterol
%P 5657-64
%V 14
%N 37
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18837081&dopt=Abstract

%A Kaddurah-Daouk R
%A Krishnan KR
%T Metabolomics: A Global Biochemical Approach to the Study of Central Nervous System Diseases
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%J Neuropsychopharmacology
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%8 Oct 8, 2008

%A Ravi C. Dwivedi
%A Vic Spicer
%A Michael Harder
%A Mihaela Antonovici
%A Werner Ens
%A Kenneth G. Standing
%A John A. Wilkins
%A Oleg V. Krokhin
%T Practical Implementation of 2D HPLC Scheme with Accurate Peptide Retention Prediction in Both Dimensions for High-Throughput Bottom-Up Proteomics
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 7036-7042
%V 80
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%U http://dx.doi.org/10.1021/ac800984n

%A Xiao GG
%A Zhou BS
%A Somlo G
%A Portnow J
%A Juhasz A
%A Un F
%A Chew H
%A Gandara D
%A Yen Y
%T Identification of F-box/LLR-repeated protein 17 as potential useful biomarker for breast cancer therapy
%0 Journal Article
%D 2008
%J Cancer Genomics Proteomics
%P 151-60
%V 5
%N 3-4
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18820369&dopt=Abstract

%A Culnan DM
%A Cooney RN
%A Stanley B
%A Lynch CJ
%T Apolipoprotein A-IV, a Putative Satiety/Antiatherogenic Factor, Rises After Gastric Bypass
%0 Journal Article
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%J Obesity (Silver Spring)
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%8 Oct 23, 2008

%A Tonikian R
%A Zhang Y
%A Sazinsky SL
%A Currell B
%A Yeh JH
%A Reva B
%A Held HA
%A Appleton BA
%A Evangelista M
%A Wu Y
%A Xin X
%A Chan AC
%A Seshagiri S
%A Lasky LA
%A Sander C
%A Boone C
%A Bader GD
%A Sidhu SS
%T A specificity map for the PDZ domain family
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%A Udeshi ND
%A Compton PD
%A Shabanowitz J
%A Hunt DF
%A Rose KL
%T Methods for analyzing peptides and proteins on a chromatographic timescale by electron-transfer dissociation mass spectrometry
%0 Journal Article
%D 2008
%J Nat Protoc
%P 1709-17
%V 3
%N 11
%U http://dx.doi.org/10.1038/nprot.2008.159

%A Harvey MC
%A Sokolowski BH
%T In Vivo Verification of Protein Interactions in the Inner Ear by Coimmunoprecipitation
%0 Journal Article
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%J Methods Mol Biol
%P 299-310
%V 493
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%A Joost W. Gouw
%A Bastiaan B. J. Tops
%A Peter Mortensen
%A Albert J. R. Heck
%A Jeroen Krijgsveld
%T Optimizing Identification and Quantitation of 15N-Labeled Proteins in Comparative Proteomics
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 7796-7803
%V 80
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%U http://dx.doi.org/10.1021/ac801249v

%A Yu Zhang
%A Yan-Ling Zhang
%A Chun Feng
%A Yan-Ting Wu
%A Ai-Xia Liu
%A Jian-Zhong Sheng
%A Jie Cai
%A He-Feng Huang
%T Comparative proteomic analysis of human placenta derived from assisted reproductive technology
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 4344-4356
%V 8
%N 20
%U http://dx.doi.org/10.1002/pmic.200800294

%A Dumas E
%A Meunier B
%A Berdagué JL
%A Chambon C
%A Desvaux M
%A Hébraud M
%T Comparative analysis of extracellular and intracellular proteomes of twelve Listeria monocytogenes strains: differential protein expression is correlated to serovar
%0 Journal Article
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%J Appl Environ Microbiol
%P -
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%U http://dx.doi.org/10.1128/AEM.00594-08
%8 Oct 3, 2008

%A Hiyoshi M
%A Konishi H
%A Uemura H
%A Matsuzaki H
%A Tsukamoto H
%A Sugimoto R
%A Takeda H
%A Dakeshita S
%A Kitayama A
%A Takami H
%A Sawachika F
%A Kido H
%A Arisawa K
%T d-Dopachrome tautomerase is a candidate for key proteins to protect the rat liver damaged by carbon tetrachloride
%0 Journal Article
%D 2008
%J Toxicology
%P -
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%U http://dx.doi.org/10.1016/j.tox.2008.09.016
%8 Sep 27, 2008

%A M. D. Mostaqul Huq
%A Sung Gil Ha
%A Li-Na Wei
%T Modulation of Retinoic Acid Receptor Alpha Activity by Lysine Methylation in the DNA Binding Domain
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 4538-4545
%V 7
%N 10
%U http://dx.doi.org/10.1021/pr800375z

%A Erik Bjorling and Mathias Uhlen
%T Antibodypedia, a Portal for Sharing Antibody and Antigen Validation Data
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 2028-2037
%V 7
%N 10
%U http://www.mcponline.org/cgi/content/abstract/7/10/2028?etoc

%A Zhu C
%A Rawe I
%A Joyce NC
%T Differential protein expression in human corneal endothelial cells cultured from young and older donors
%0 Journal Article
%D 2008
%J Mol Vis
%P 1805-14
%V 14
%N 
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18852868&dopt=Abstract

%A Liming Mao
%A Hongtao Dong
%A Peizeng Yang
%A Hongyan Zhou
%A Xiangkun Huang
%A Xiaomin Lin
%A Aize Kijlstra
%T MALDI-TOF/TOF-MS Reveals Elevated Serum Haptoglobin and Amyloid A in Behcet’s Disease
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 4500-4507
%V 7
%N 10
%U http://dx.doi.org/10.1021/pr800279m

%A Julia Wiesner
%A Thomas Premsler
%A Albert Sickmann
%T Application of electron transfer dissociation (ETD) for the analysis of posttranslational modifications
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 4466-4483
%V 8
%N 21
%U http://dx.doi.org/10.1002/pmic.200800329

%A Kornblau SM
%A Tibes R
%A Qiu Y
%A Chen W
%A Kantarjian HM
%A Andreeff M
%A Coombes KR
%A Mills GB
%T Functional proteomic profiling of AML predicts response and survival
%0 Journal Article
%D 2008
%J Blood
%P -
%V 
%N 
%U http://dx.doi.org/10.1182/blood-2007-10-119438
%8 Oct 7, 2008

%A James A. Dowell
%A Dustin C. Frost
%A Jiang Zhang
%A Lingjun Li
%T Comparison of Two-Dimensional Fractionation Techniques for Shotgun Proteomics
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 6715-6723
%V 80
%N 17
%U http://dx.doi.org/10.1021/ac8007994

%A Sung HJ
%A Cho JY
%T Biomarkers for the lung cancer diagnosis and their advances in proteomics
%0 Journal Article
%D 2008
%J BMB Rep
%P 615-25
%V 41
%N 9
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18823584&dopt=Abstract

%A Ji Eun Lee
%A Shama P. Mirza
%A Daniela N. Didier
%A Mark Scalf
%A Michael Olivier
%A Andrew S. Greene
%A Lloyd M. Smith
%T Identification of Cell Surface Markers to Differentiate Rat Endothelial and Fibroblast Cells Using Lectin Arrays and LC−ESI-MS/MS
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 8269-8275
%V 80
%N 21
%U http://dx.doi.org/10.1021/ac801390b

%A Clements RT
%A Smejkal G
%A Sodha NR
%A Ivanov AR
%A Asara JM
%A Feng J
%A Lazarev A
%A Gautam S
%A Senthilnathan V
%A Khabbaz KR
%A Bianchi C
%A Sellke FW
%T Pilot proteomic profile of differentially regulated proteins in right atrial appendage before and after cardiac surgery using cardioplegia and cardiopulmonary bypass
%0 Journal Article
%D 2008
%J Circulation
%P S24-31
%V 118
%N 14 Suppl
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18824761&dopt=Abstract

%A Catusse J
%A Job C
%A Job D
%T Transcriptome- and proteome-wide analyses of seed germination
%0 Journal Article
%D 2008
%J C R Biol
%P 815-22
%V 331
%N 10
%U http://dx.doi.org/10.1016/j.crvi.2008.07.023

%A Pichler A
%A Prior JL
%A Luker GD
%A Piwnica-Worms D
%T Generation of a highly inducible Gal4->Fluc universal reporter mouse for in vivo bioluminescence imaging
%0 Journal Article
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%J Proc Natl Acad Sci U S A
%P 15932-7
%V 105
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%U http://dx.doi.org/10.1073/pnas.0801075105

%A Boehmer JL
%A Bannerman DD
%A Shefcheck K
%A Ward JL
%T Proteomic analysis of differentially expressed proteins in bovine milk during experimentally induced Escherichia coli mastitis
%0 Journal Article
%D 2008
%J J Dairy Sci
%P 4206-18
%V 91
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%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18946125&dopt=Abstract

%A Poh-Kuan Chong
%A Huiyin Lee
%A Jacklyn Wai-Fun Kong
%A Marie Chiew-Shia Loh
%A Chee-Hong Wong
%A Yoon-Pin Lim
%T Phosphoproteomics, oncogenic signaling and cancer research
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 4370-4382
%V 8
%N 21
%U http://dx.doi.org/10.1002/pmic.200800051

%A Monsellier E
%A Ramazzotti M
%A Taddei N
%A Chiti F
%T Aggregation propensity of the human proteome
%0 Journal Article
%D 
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%A Paes Leme AF
%A Bellato CM
%A Bedi G
%A Del Bel Cury AA
%A Koo H
%A Cury JA
%T Effects of Sucrose on the Extracellular Matrix of Plaque-Like Biofilm Formed in vivo, Studied by Proteomic Analysis
%0 Journal Article
%D 2008
%J Caries Res
%P 435-443
%V 42
%N 6
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18832830&dopt=Abstract

%A Dimitrios G. Papasotiriou
%A Stavroula Markoutsa
%A Bjoern Meyer
%A Anastasia Papadioti
%A Michael Karas
%A Georgios Tsiotis
%T Comparison of the Membrane Subproteomes during Growth of a New Pseudomonas Strain on Lysogeny Broth Medium, Glucose, and Phenol
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 4278-4288
%V 7
%N 10
%U http://dx.doi.org/10.1021/pr800192n

%A Suresh Mathivanan and Akhilesh Pandey
%T Human Proteinpedia as a Resource for Clinical Proteomics
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 2038-2047
%V 7
%N 10
%U http://www.mcponline.org/cgi/content/abstract/7/10/2038?etoc

%A Jesse D. Canterbury
%A Xianhua Yi
%A Michael R. Hoopmann
%A Michael J. MacCoss
%T Assessing the Dynamic Range and Peak Capacity of Nanoflow LC−FAIMS−MS on an Ion Trap Mass Spectrometer for Proteomics
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 6888-6897
%V 80
%N 18
%U http://dx.doi.org/10.1021/ac8004988

%A Jacob D. Jaffe
%A Hasmik Keshishian
%A Betty Chang
%A Theresa A. Addona
%A Michael A. Gillette
%A Steven A. Carr
%T Accurate Inclusion Mass Screening: A Bridge from Unbiased Discovery to Targeted Assay Development for Biomarker Verification
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 1952-1962
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%N 10
%U http://www.mcponline.org/cgi/content/abstract/7/10/1952?etoc

%A Sandra Morandell
%A Taras Stasyk
%A Sergej Skvortsov
%A Stefan Ascher
%A Lukas A. Huber
%T Quantitative proteomics and phosphoproteomics reveal novel insights into complexity and dynamics of the EGFR signaling network
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 4383-4401
%V 8
%N 21
%U http://dx.doi.org/10.1002/pmic.200800204

%A Boireau W
%A Rouleau A
%A Lucchi G
%A Ducoroy P
%T Revisited BIA-MS combination: Entire "on-a-chip" processing leading to the proteins identification at low femtomole to sub-femtomole levels
%0 Journal Article
%D 2008
%J Biosens Bioelectron
%P -
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%N 
%U http://dx.doi.org/10.1016/j.bios.2008.06.030
%8 Jul 1, 2008

%A Jacob JT
%A Ham B
%T Compositional Profiling and Biomarker Identification of the Tear Film
%0 Journal Article
%D 2008
%J Ocul Surf
%P 175-185
%V 6
%N 4
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18827950&dopt=Abstract

%A Nakano M
%A Higo D
%A Arai E
%A Nakagawa T
%A Kakehi K
%A Taniguchi N
%A Kondo A
%T Capillary Electrophoresis-Electrospray Ionization Mass Spectrometry for Rapid and Sensitive N-glycan Analysis of Glycoproteins as 9-Fluorenylmethyl Derivatives
%0 Journal Article
%D 2008
%J Glycobiology
%P -
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%8 Oct 25, 2008

%A Emgenbroich M
%A Borrelli C
%A Shinde S
%A Lazraq I
%A Vilela F
%A Hall AJ
%A Oxelbark J
%A De Lorenzi E
%A Courtois J
%A Simanova A
%A Verhage J
%A Irgum K
%A Karim K
%A Sellergren B
%T A Phosphotyrosine-Imprinted Polymer Receptor for the Recognition of Tyrosine Phosphorylated Peptides
%0 Journal Article
%D 2008
%J Chemistry
%P 9516-9529
%V 14
%N 31
%U http://dx.doi.org/10.1002/chem.200801046

%A Federico Torta
%A Vera Usuelli
%A Antonio Malgaroli
%A Angela Bachi
%T Proteomic analysis of protein S-nitrosylation
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 4484-4494
%V 8
%N 21
%U http://dx.doi.org/10.1002/pmic.200800089

%A Mossuz P
%A Arlotto M
%A Hermouet S
%A Bouamrani A
%A Lippert E
%A Girodon F
%A Dobo I
%A Vincent P
%A Cahn JY
%A Berger F
%T Proteomic study of the impact of the JAK2-V617F mutation on the phenotype of essential thrombocythemia
%0 Journal Article
%D 2008
%J Exp Hematol
%P -
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%N 
%U http://dx.doi.org/10.1016/j.exphem.2008.07.013
%8 Oct 4, 2008

%A Junhua Wang
%A Mingming Ma
%A Ruibing Chen
%A Lingjun Li
%T Enhanced Neuropeptide Profiling via Capillary Electrophoresis Off-Line Coupled with MALDI FTMS
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 6168-6177
%V 80
%N 16
%U http://dx.doi.org/10.1021/ac800382t

%A Reckow S
%A Gormanns P
%A Holsboer F
%A Turck CW
%T Psychiatric disorders biomarker identification: from proteomics to systems biology
%0 Journal Article
%D 2008
%J Pharmacopsychiatry
%P S70-7
%V 41
%N Suppl 1
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18756423&dopt=Abstract

%A J. S. Mellors
%A V. Gorbounov
%A R. S. Ramsey
%A J. M. Ramsey
%T Fully Integrated Glass Microfluidic Device for Performing High-Efficiency Capillary Electrophoresis and Electrospray Ionization Mass Spectrometry
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 6881-6887
%V 80
%N 18
%U http://dx.doi.org/10.1021/ac800428w

%A Eric Thouvenot
%A Serge Urbach
%A Christelle Dantec
%A Joël Poncet
%A Martial Séveno
%A Edith Demettre
%A Patrick Jouin
%A Jacques Touchon
%A Joël Bockaert
%A Philippe Marin
%T Enhanced Detection of CNS Cell Secretome in Plasma Protein-Depleted Cerebrospinal Fluid
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 4409-4421
%V 7
%N 10
%U http://dx.doi.org/10.1021/pr8003858

%A Cristina-Maria Valcu
%A Céline Lalanne
%A Christophe Plomion
%A Katja Schlink
%T Heat induced changes in protein expression profiles of Norway spruce (Picea abies) ecotypes from different elevations
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 4287-4302
%V 8
%N 20
%U http://dx.doi.org/10.1002/pmic.200700992

%A Kunsoo Park
%A Joo Young Yoon
%A Sunho Lee
%A Eunok Paek
%A Heejin Park
%A Hee-Jung Jung
%A Sang-Won Lee
%T Isotopic Peak Intensity Ratio Based Algorithm for Determination of Isotopic Clusters and Monoisotopic Masses of Polypeptides from High-Resolution Mass Spectrometric Data
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 7294-7303
%V 80
%N 19
%U http://dx.doi.org/10.1021/ac800913b

%A Kolditz CI
%A Paboeuf G
%A Borthaire M
%A Esquerre D
%A Sancristobal M
%A Lefevre F
%A Medale F
%T Changes induced by dietary energy intake and divergent selection for muscle fat content in rainbow trout (Oncorhynchus mykiss), assessed by transcriptome and proteome analysis of the liver
%0 Journal Article
%D 
%J 
%P -
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%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18959775&dopt=Abstract

%A Takahiro Hayasaka
%A Naoko Goto-Inoue
%A Yuki Sugiura
%A Nobuhiro Zaima
%A Hiroki Nakanishi
%A Kentaro Ohishi
%A Setsuko Nakanishi
%A Takayuki Naito
%A Ryo Taguchi
%A Mitsutoshi Setou
%T Matrix-assisted laser desorption/ionization quadrupole ion trap time-of-flight (MALDI-QIT-TOF)-based imaging mass spectrometry reveals a layered distribution of phospholipid molecular species in the mouse retina
%0 Journal Article
%D 2008
%J Rapid Communications in Mass Spectrometry
%P 3415-3426
%V 22
%N 21
%U http://dx.doi.org/10.1002/rcm.3751

%A Jaishankar A
%A Barthelery M
%A Freeman WM
%A Salli U
%A Ritty T
%A Vrana K
%T Human Embryonic and Mesenchymal Stem Cells Express Different Nuclear Proteomes
%0 Journal Article
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%J Stem Cells Dev
%P -
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%U http://dx.doi.org/10.1089/scd.2008.0156
%8 Sep 26, 2008

%A Piltti J
%A Häyrinen J
%A Karjalainen HM
%A Lammi MJ
%T Proteomics of chondrocytes with special reference to phosphorylation changes of proteins in stretched human chondrosarcoma cells
%0 Journal Article
%D 2008
%J Biorheology
%P 323-35
%V 45
%N 3-4
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18836233&dopt=Abstract

%A Tammy F. Wu and Diana S. Chu
%T Sperm Chromatin: Fertile Grounds for Proteomic Discovery of Clinical Tools
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 1876-1886
%V 7
%N 10
%U http://www.mcponline.org/cgi/content/abstract/7/10/1876?etoc

%A Hargreaves GA
%A Quinn H
%A Kashem MA
%A Matsumoto I
%A McGregor IS
%T Proteomic Analysis Demonstrates Adolescent Vulnerability to Lasting Hippocampal Changes Following Chronic Alcohol Consumption
%0 Journal Article
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%J Alcohol Clin Exp Res
%P -
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%N 
%U http://dx.doi.org/10.1111/j.1530-0277.2008.00814.x
%8 Oct 18, 2008

%A Alain Doucet
%A Georgina S. Butler
%A David Rodriguez
%A Anna Prudova
%A Christopher M. Overall
%T Metadegradomics: Toward in Vivo Quantitative Degradomics of Proteolytic Post-translational Modifications of the Cancer Proteome
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 1925-1951
%V 7
%N 10
%U http://www.mcponline.org/cgi/content/abstract/7/10/1925?etoc

%A V. Ramesh
%A M. Ramesh
%A R. Srinivas
%A G. V. M. Sharma
%A P. Jayaprakash
%T Electrospray ionization tandem mass spectrometric study on the effect of N-terminal ?- and ?-carbo amino acids on fragmentation of GABA-hybrid peptides
%0 Journal Article
%D 2008
%J Rapid Communications in Mass Spectrometry
%P 3339-3352
%V 22
%N 21
%U http://dx.doi.org/10.1002/rcm.3743

%A Ramm SA
%A McDonald L
%A Hurst JL
%A Beynon RJ
%A Stockley P
%T Comparative Proteomics Reveals Evidence for Evolutionary Diversification of Rodent Seminal Fluid and Its Functional Significance in Sperm Competition
%0 Journal Article
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%J Mol Biol Evol
%P -
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%U http://dx.doi.org/10.1093/molbev/msn237
%8 Oct 17, 2008

%A Thon JN
%A Schubert P
%A Devine DV
%T Platelet storage lesion: a new understanding from a proteomic perspective
%0 Journal Article
%D 2008
%J Transfus Med Rev
%P 268-79
%V 22
%N 4
%U http://dx.doi.org/10.1016/j.tmrv.2008.05.004

%A Lam W
%A Chan WM
%A Lo TW
%A Wong AK
%A Wu CC
%A Chan HY
%T Human receptor for activated protein kinase C1 associates with polyglutamine aggregates and modulates polyglutamine toxicity
%0 Journal Article
%D 2008
%J Biochem Biophys Res Commun
%P -
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%U http://dx.doi.org/10.1016/j.bbrc.2008.10.057
%8 Oct 20, 2008

%A Koshino LL
%A Gomes CP
%A Silva LP
%A Eira MT
%A Bloch Jr C
%A Franco OL
%A Mehta A
%T Comparative Proteomical Analysis of Zygotic Embryo and Endosperm from Coffea arabica Seeds
%0 Journal Article
%D 2008
%J J Agric Food Chem
%P -
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%N 
%U http://dx.doi.org/10.1021/jf801734m
%8 Oct 30, 2008

%A Michael Zhuo Wang
%A Judy Qiju Wu
%A Jennifer B. Dennison
%A Arlene S. Bridges
%A Stephen D. Hall
%A Sally Kornbluth
%A Richard R. Tidwell
%A Philip C. Smith
%A Robert D. Voyksner
%A Mary F. Paine
%A James Edwin Hall
%T A gel-free MS-based quantitative proteomic approach accurately measures cytochrome P450 protein concentrations in human liver microsomes
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 4186-4196
%V 8
%N 20
%U http://dx.doi.org/10.1002/pmic.200800144

%A Samuel Sánchez
%A Mònica Roldán
%A Sandra Pérez
%A Esteve Fàbregas
%T Toward a Fast, Easy, and Versatile Immobilization of Biomolecules into Carbon Nanotube/Polysulfone-Based Biosensors for the Detection of hCG Hormone
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 6508-6514
%V 80
%N 17
%U http://dx.doi.org/10.1021/ac7025282

%A Chatr-aryamontri A
%A Kerrien S
%A Khadake J
%A Orchard S
%A Ceol A
%A Licata L
%A Castagnoli L
%A Costa S
%A Derow C
%A Huntley R
%A Aranda B
%A Leroy C
%A Thorneycroft D
%A Apweiler R
%A Cesareni G
%A Hermjakob H
%T MINT and IntAct contribute to the Second BioCreative challenge: serving the text-mining community with high quality molecular interaction data
%0 Journal Article
%D 
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%U http://dx.doi.org/10.1186/gb-2008-9-s2-s5

%A Matthew E. Szapacs
%A Hye-Young H. Kim
%A Ned A. Porter
%A Daniel C. Liebler
%T Identification of Proteins Adducted by Lipid Peroxidation Products in Plasma and Modifications of Apolipoprotein A1 with a Novel Biotinylated Phospholipid Probe
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 4237-4246
%V 7
%N 10
%U http://dx.doi.org/10.1021/pr8001222

%A Gordon W. Slysz
%A Andrew J. Percy
%A David C. Schriemer
%T Restraining Expansion of the Peak Envelope in H/D Exchange-MS and Its Application in Detecting Perturbations of Protein Structure/Dynamics
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 7004-7011
%V 80
%N 18
%U http://dx.doi.org/10.1021/ac800897q

%A Nils Helge Schebb
%A Ferry Heus
%A Thorsten Saenger
%A Uwe Karst
%A Hubertus Irth
%A Jeroen Kool
%T Development of a Countergradient Parking System for Gradient Liquid Chromatography with Online Biochemical Detection of Serine Protease Inhibitors
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 6764-6772
%V 80
%N 17
%U http://dx.doi.org/10.1021/ac801035e

%A Chenglin Wu
%A Irene Söderhäll
%A Young-A Kim
%A Haipeng Liu
%A Kenneth Söderhäll
%T Hemocyte-lineage marker proteins in a crustacean, the freshwater crayfish, Pacifastacus leniusculus
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 4226-4235
%V 8
%N 20
%U http://dx.doi.org/10.1002/pmic.200800177

%A Imai K
%A Ichibangase T
%A Saitoh R
%A Hoshikawa Y
%T A proteomics study on human breast cancer cell lines by fluorogenic derivatization-liquid chromatography/tandem mass spectrometry
%0 Journal Article
%D 2008
%J Biomed Chromatogr
%P 1304-1314
%V 22
%N 11
%U http://dx.doi.org/10.1002/bmc.1102

%A Patricia Alfonso
%A Marta Cañamero
%A Francisco Fernández-Carbonié
%A Antonio Núñez
%A J. Ignacio Casal
%T Proteome Analysis of Membrane Fractions in Colorectal Carcinomas by Using 2D-DIGE Saturation Labeling
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 4247-4255
%V 7
%N 10
%U http://dx.doi.org/10.1021/pr800152u

%A Alex P
%A Gucek M
%A Li X
%T Applications of proteomics in the study of inflammatory bowel diseases: Current status and future directions with available technologies
%0 Journal Article
%D 2008
%J Inflamm Bowel Dis
%P -
%V 
%N 
%U http://dx.doi.org/10.1002/ibd.20652
%8 Oct 9, 2008

%A Chen LM
%A Tran BN
%A Lin Q
%A Lim TK
%A Wang F
%A Hew CL
%T iTRAQ analysis of Singapore grouper iridovirus infection in a grouper embryonic cell line
%0 Journal Article
%D 2008
%J J Gen Virol
%P 2869-76
%V 89
%N Pt 11
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18931085&dopt=Abstract

%A Viktor Adalsteinsson
%A Omkar Parajuli
%A Stephen Kepics
%A Abhishek Gupta
%A W. Brian Reeves
%A Jong-in Hahm
%T Ultrasensitive Detection of Cytokines Enabled by Nanoscale ZnO Arrays
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 6594-6601
%V 80
%N 17
%U http://dx.doi.org/10.1021/ac800747q

%A Jenkins JR
%T A proteomic approach to identifying new drug targets (potentiating topoisomerase II poisons)
%0 Journal Article
%D 
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%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18820001&dopt=Abstract

%A Zhengyu Li
%A Xia Zhao
%A Shujun Bai
%A Zhi Wang
%A Lijuan Chen
%A Yuquan Wei
%A Canhua Huang
%T Proteomics Identification of Cyclophilin A as a Potential Prognostic Factor and Therapeutic Target in Endometrial Carcinoma
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 1810-1823
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%T Proteomic analysis of secreted membrane vesicles of archaeal Sulfolobus species reveals the presence of endosome sorting complex components
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%T Liquid chromatography/mass spectrometry determination of endogenous plasma acetyl and palmitoyl carnitines as potential biomarkers of ?-oxidation in mice
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%T Proteomic and transcriptomic analysis of Aspergillus fumigatus on exposure to amphotericin B
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%T Building proteomic pathways using Drosophila ventral furrow formation as a model
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%A Jin H
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%T Analysis of expression and comparative profile of normal placental tissue proteins and those in preeclampsia patients using proteomic approaches
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%T Comparative proteomics and molecular mechanical analysis in CDA-II induced therapy of LCI-D20 hepatocellular carcinoma model
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%T Characterization of the Secretome of Suspension Cultures of Medicago Species Reveals Proteins Important for Defense and Development
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%T Proteomic analysis of curdlan-producing Agrobacterium sp. in response to pH downshift
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%T Cyclophosphoramidate Ion as Mass Defect Marker for Efficient Detection of Protein Serine Phosphorylation
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%A Ana C. Calvo
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%A Raquel Manzano
%A Laura Ordovás
%A Gema Yagüe
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%A Pilar Zaragoza
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%T Determination of protein and RNA expression levels of common housekeeping genes in a mouse model of neurodegeneration
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%A Sandra Orchard
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%A Eric W. Deutsch
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%A David Creasy
%A Henning Hermjakob
%T Annual Spring Meeting of the Proteomics Standards Initiative 23-25 April 2008, Toledo, Spain
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%T Molecular mechanisms of action of imatinib mesylate in human ovarian cancer: a proteomic analysis
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%A Eszter Bohus
%A Muireann Coen
%A Hector C. Keun
%A Timothy M. D. Ebbels
%A Olaf Beckonert
%A John C. Lindon
%A Elaine Holmes
%A Béla Noszál
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%T Temporal Metabonomic Modeling of L-Arginine-Induced Exocrine Pancreatitis
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%A Robbie Montgomery
%A Hanna Shay
%A Matthew McCarroll
%A Luke Tolley
%T DIABLA: A New Screening Method for the Discovery of Protein Targets
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%A Rajendrani Mukhopadhyay
%T IMS/MS: its time has come
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%A Qiang Zhao
%A Xing-Fang Li
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%A X. Chris Le
%T Aptamer-Based Affinity Chromatographic Assays for Thrombin
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%T Strategies for proteomic analysis of non-enzymatically glycated proteins
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%A Yoshimasa Tsuruoka
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%A Sophia Ananiadou
%T FACTA: a text search engine for finding associated biomedical concepts
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%T Identification of prognosis-related proteins in advanced gastric cancer by mass spectrometry-based comparative proteomics
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%A Chia-Li Han
%A Chih-Wei Chien
%A Wen-Cheng Chen
%A Yet-Ran Chen
%A Chien-Peng Wu
%A Hung Li
%A Yu-Ju Chen
%T A Multiplexed Quantitative Strategy for Membrane Proteomics: Opportunities for Mining Therapeutic Targets for Autosomal Dominant Polycystic Kidney Disease
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%T Dietary supplementation with selenomethylselenocysteine produces a differential proteomic response
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%T Proteomic profiling of beta-cells using a classical approach - two-dimensional gel electrophoresis
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%T Age-Related Changes in the Expression and Oxidation of Bronchoalveolar Lavage Proteins in the Rat
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%A Ting Liu
%A Angela M. Martin
%A Anthony P. Sinai
%A Bert C. Lynn
%T Three-Layer Sandwich Gel Electrophoresis: A Method of Salt Removal and Protein Concentration in Proteome Analysis
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%J JOURNAL OF PROTEOME RESEARCH
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%A Maria Fälth
%A Mikhail M. Savitski
%A Michael L. Nielsen
%A Frank Kjeldsen
%A Per E. Andren
%A Roman A. Zubarev
%T Analytical Utility of Small Neutral Losses from Reduced Species in Electron Capture Dissociation Studied Using SwedECD Database
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%A Cheng JS
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%T Comparative proteome analysis of robust Saccharomyces cerevisiae insights into industrial continuous and batch fermentation
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%A Ulrike Korf
%A Sophia Derdak
%A Achim Tresch
%A Frauke Henjes
%A Sabrina Schumacher
%A Christian Schmidt
%A Bettina Hahn
%A Wolf D. Lehmann
%A Annemarie Poustka
%A Tim Beissbarth
%A Ursula Klingmüller
%T Quantitative protein microarrays for time-resolved measurements of protein phosphorylation
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%A Bachtiar I
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%T Combination of alpha-1-acid glycoprotein and alpha-fetoprotein as an improved diagnostic tool for hepatocellular carcinoma
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%A Lisa Berglund
%A Erik Bjorling
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%A Cristina Al-Khalili Szigyarto
%A Anja Persson
%A Jenny Ottosson
%A Henrik Wernerus
%A Peter Nilsson
%A Emma Lundberg
%A Asa Sivertsson
%A Sanjay Navani
%A Kenneth Wester
%A Caroline Kampf
%A Sophia Hobe
%T A Genecentric Human Protein Atlas for Expression Profiles Based on Antibodies
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%A Daniela Cecconi
%A Alberto Zamò
%A Elena Bianchi
%A Alice Parisi
%A Stefano Barbi
%A Alberto Milli
%A Sara Rinalducci
%A Andreas Rosenwald
%A Elena Hartmann
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%T Signal transduction pathways of mantle cell lymphoma: A phosphoproteome-based study
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%A Atrayee Banerjee
%A William K. Russell
%A Arul Jayaraman
%A Shashi K. Ramaiah
%T Identification of proteins to predict the molecular basis for the observed gender susceptibility in a rat model of alcoholic steatohepatitis by 2-D gel proteomics
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%A Lee SR
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%A Pharr GT
%A Stokes JV
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%T Bovine Viral Diarrhea Virus infection affects the expression of proteins related to professional antigen presentation in bovine monocytes
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%A Moreno Y
%A Geary TG
%T Stage- and Gender-Specific Proteomic Analysis of Brugia malayi Excretory-Secretory Products
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%T Genomics and proteomics: a new approach for assessing thrombotic risk in autoimmune diseases
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%T Sialome Individuality Between Aedes aegypti Colonies
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%T Peritoneal fluid proteome in women with different ASRM stages of endometriosis
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%A Hsu WM
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%A Juan HF
%A Shih YY
%A Wang BJ
%A Pan CY
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%A Chang HH
%A Lu MY
%A Lin KH
%A Lai HS
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%T Identification of GRP75 as an Independent Favorable Prognostic Marker of Neuroblastoma by a Proteomics Analysis
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%A Huygen K
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%T PhoP: a missing piece in the intricate puzzle of Mycobacterium tuberculosis virulence
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%A Kiga C
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%T Proteomic identification of haptoglobin as a stroke plasma biomarker in spontaneously hypertensive stroke-prone rats
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%A de Godoy LM
%A Olsen JV
%A Cox J
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%T Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast
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%A Henrik Thomas
%A Andrej Shevchenko
%T Simplified validation of borderline hits of database searches
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%A Dai Y
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%A Wang K
%A Huang Y
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%A Liu J
%T Detection of acute renal allograft rejection by analysis of renal tissue proteomics in rat models of renal transplantation
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%A Helena Skalnikova
%A Petr Vodicka
%A Steven Pelech
%A Jan Motlik
%A Suresh Jivan Gadher
%A Hana Kovarova
%T Protein signaling pathways in differentiation of neural stem cells
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%U http://dx.doi.org/10.1002/pmic.200800096

%A Zhong LP
%A Wei KJ
%A Yang X
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%A Zhou XJ
%A Pan HY
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%A Zhang ZY
%T Increased expression of Annexin A2 in oral squamous cell carcinoma
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%8 Sep 24, 2008

%A Gang Xing
%A Junmei Zhang
%A Yue Chen
%A Yingming Zhao
%T Identification of Four Novel Types of in Vitro Protein Modifications
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%P 4603-4608
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%U http://dx.doi.org/10.1021/pr800456q

%A Ulrich Kruse
%A Marcus Bantscheff
%A Gerard Drewes
%A Carsten Hopf
%T Chemical and Pathway Proteomics: Powerful Tools for Oncology Drug Discovery and Personalized Health Care
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%J Mol Cell Proteomics
%P 1887-1901
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%A Xiao X. Han
%A Yasutaka Kitahama
%A Yuhei Tanaka
%A Jie Guo
%A Wei Q. Xu
%A Bing Zhao
%A Yukihiro Ozaki
%T Simplified Protocol for Detection of Protein−Ligand Interactions via Surface-Enhanced Resonance Raman Scattering and Surface-Enhanced Fluorescence
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%J ANALYTICAL CHEMISTRY
%P 6567-6572
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%U http://dx.doi.org/10.1021/ac800642g

%A Akira Motoyama and John R. Yates III
%T Multidimensional LC Separations in Shotgun Proteomics
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%J ANALYTICAL CHEMISTRY
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%U http://dx.doi.org/10.1021/ac8013669

%A Hemming ML
%A Elias JE
%A Gygi SP
%A Selkoe DJ
%T Proteomic Profiling of gamma-Secretase Substrates and Mapping of Substrate Requirements
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%A Hsin-Yi Wu
%A Fu-Yung Huang
%A Yu-Chen Chang
%A Meng-Chun Hsieh
%A Pao-Chi Liao
%T Strategy for Determination of in Vitro Protein Acetylation Sites by Using Isotope-Labeled Acetyl Coenzyme A and Liquid Chromatography−Mass Spectrometry
%0 Journal Article
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%A Rosenquist M
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%T Shotgun metaproteomics of the human distal gut microbiota
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%A Matthias Rainer
%A Harald Sonderegger
%A Rania Bakry
%A Christian W. Huck
%A Sandra Morandell
%A Lukas A. Huber
%A Douglas T. Gjerde
%A Günther K. Bonn
%T Analysis of protein phosphorylation by monolithic extraction columns based on poly(divinylbenzene) containing embedded titanium dioxide and zirconium dioxide nano-powders
%0 Journal Article
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%J PROTEOMICS
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%U http://dx.doi.org/10.1002/pmic.200800448

%A Wenwen Shen
%A Huanming Xiong
%A Ye Xu
%A Sanjun Cai
%A Haojie Lu
%A Pengyuan Yang
%T ZnO−Poly(methyl methacrylate) Nanobeads for Enriching and Desalting Low-Abundant Proteins Followed by Directly MALDI-TOF MS Analysis
%0 Journal Article
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%J ANALYTICAL CHEMISTRY
%P 6758-6763
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%U http://dx.doi.org/10.1021/ac801001b

%A Catherine Fenselau
%T The Proteomic Revolution Has Changed the Capabilities of Analytical Chemistry
%0 Journal Article
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%J ANALYTICAL CHEMISTRY
%P 7903-7903
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%U http://dx.doi.org/10.1021/ac802043c

%A Danielle Caron
%A Éric Winstall
%A Yutaka Inaguma
%A Sébastien Michaud
%A Francine Lettre
%A Sylvie Bourassa
%A Isabelle Kelly
%A Guy G. Poirier
%A Robert L. Faure
%A Robert M. Tanguay
%T Proteomic Characterization of Mouse Cytosolic and Membrane Prostate Fractions: High Levels of Free SUMO Peptides Are Androgen-Regulated
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 4492-4499
%V 7
%N 10
%U http://dx.doi.org/10.1021/pr8002497

%A Fei-Yan Deng
%A Yao-Zhong Liu
%A Li-Ming Li
%A Chen Jiang
%A Shan Wu
%A Yuan Chen
%A Hui Jiang
%A Fang Yang
%A Ji-Xian Xiong
%A Peng Xiao
%A Su-Mei Xiao
%A Li-Jun Tan
%A Xiao Sun
%A Xue-Zhen Zhu
%A Man-Yuan Liu
%A Shu-Feng Lei
%A Xiang-Ding Chen
%A Jing-Yun Xie
%A Gary G. Xiao
%A Song-Ping Li
%T Proteomic analysis of circulating monocytes in Chinese premenopausal females with extremely discordant bone mineral density
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 4259-4272
%V 8
%N 20
%U http://dx.doi.org/10.1002/pmic.200700480

%A Urh M
%A Hartzell D
%A Mendez J
%A Klaubert DH
%A Wood K
%T Methods for detection of protein-protein and protein-DNA interactions using HaloTag
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%J Methods Mol Biol
%P 191-209
%V 421
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%A Jimmy K. Eng
%A Bernd Fischer
%A Jonas Grossmann
%A Michael J. MacCoss
%T A Fast SEQUEST Cross Correlation Algorithm
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%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 4598-4602
%V 7
%N 10
%U http://dx.doi.org/10.1021/pr800420s

%A Abdel-Hafeez EH
%A Kikuchi M
%A Watanabe K
%A Ito T
%A Yu C
%A Chen H
%A Nara T
%A Arakawa T
%A Aoki Y
%A Hirayama K
%T Proteome approach for identification of schistosomiasis japonica vaccine candidate antigen
%0 Journal Article
%D 2008
%J Parasitol Int
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%8 Oct 7, 2008

%A Gallien S
%A Perrodou E
%A Carapito C
%A Deshayes C
%A Reyrat JM
%A Van Dorsselaer A
%A Poch O
%A Schaeffer C
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%T Ortho-proteogenomics: Multiple proteomes investigation through orthology and a new MS-based protocol
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%J Genome Res
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%8 Oct 27, 2008

%A Tsoching Chen
%A Min-Jung Lee
%A Yeong Sang Kim
%A Sunmin Lee
%A Shivaani Kummar
%A Martin Gutierrez
%A Stephen M. Hewitt
%A Jane B. Trepel
%A Ira W. Levin
%T Pharmacodynamic Assessment of Histone Deacetylase Inhibitors: Infrared Vibrational Spectroscopic Imaging of Protein Acetylation
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 6390-6396
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%U http://dx.doi.org/10.1021/ac800840y

%A Suberbielle E
%A Stella A
%A Pont F
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%A Gonzalez-Dunia D
%T Proteomic analysis reveals selective impediment of neuronal remodeling upon Borna disease virus infection
%0 Journal Article
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%J J Virol
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%8 Oct 1, 2008

%A Alistair V. G. Edwards
%A Melanie Y. White
%A Stuart J. Cordwell
%T The Role of Proteomics in Clinical Cardiovascular Biomarker Discovery
%0 Journal Article
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%J Mol Cell Proteomics
%P 1824-1837
%V 7
%N 10
%U http://www.mcponline.org/cgi/content/abstract/7/10/1824?etoc

%A Chen ZY
%A Brown RL
%A Damann KE
%A Cleveland TE
%T Identification of Maize Kernel Endosperm Proteins Associated with Resistance to Aflatoxin Contamination by Aspergillus flavus
%0 Journal Article
%D 2007
%J Phytopathology
%P 1094-1103
%V 97
%N 9
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18944174&dopt=Abstract

%A An Nguyen and Mehdi Moini
%T Analysis of Major Protein−Protein and Protein−Metal Complexes of Erythrocytes Directly from Cell Lysate Utilizing Capillary Electrophoresis Mass Spectrometry
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 7169-7173
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%N 18
%U http://dx.doi.org/10.1021/ac801158q

%A Winnik WM
%A Ortiz PA
%T Proteomic analysis optimization: Selective protein sample on-column retention in reverse-phase liquid chromatography
%0 Journal Article
%D 2008 Oct 2
%J J Chromatogr B Analyt Technol Biomed Life Sci
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%8 2008 Oct 2

%A Karl J
%A Wild N
%A Tacke M
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%A Garczarek U
%A Rollinger W
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%T Improved diagnosis of colorectal cancer using a combination of fecal occult blood and novel fecal protein markers
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%J Clin Gastroenterol Hepatol
%P 1122-8
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%A Wolfram Weckwerth
%A Sacha Baginsky
%A Klaas van Wijk
%A Joshua L. Heazlewood
%A Harvey Millar
%T The Multinational Arabidopsis Steering Subcommittee for Proteomics Assembles the Largest Proteome Database Resource for Plant Systems Biology
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 4209-4210
%V 7
%N 10
%U http://dx.doi.org/10.1021/pr800480u

%A The UniProt Consortium
%T The Universal Protein Resource (UniProt) 2009
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%J Nucleic Acids Res
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%8 Oct 4, 2008

%A Nidhi Nath
%A Robin Hurst
%A Brad Hook
%A Poncho Meisenheimer
%A Kate Q. Zhao
%A Nadine Nassif
%A Robert F. Bulleit
%A Douglas R. Storts
%T Improving Protein Array Performance: Focus on Washing and Storage Conditions
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 4475-4482
%V 7
%N 10
%U http://dx.doi.org/10.1021/pr800323j

%A Yuan-Qing Xia
%A Steven T. Wu
%A Mohammed Jemal
%T LC-FAIMS-MS/MS for Quantification of a Peptide in Plasma and Evaluation of FAIMS Global Selectivity from Plasma Components
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 7137-7143
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%U http://dx.doi.org/10.1021/ac8010846

%A Nicolas Favre
%A Montserrat Camps
%A Christian Arod
%A Christian Chabert
%A Christian Rommel
%A Christian Pasquali
%T Chemokine receptor CCR2 undergoes transportin1-dependent nuclear translocation
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 4560-4576
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%N 21
%U http://dx.doi.org/10.1002/pmic.200800211

%A Trost B
%A Kanduc D
%A Kusalik A
%T Rare peptide segments are found significantly more often in proto-oncoproteins than control proteins: implications for immunology and oncology
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%8 Oct 23, 2008

%A Cheng L
%A Zhou L
%A Tao L
%A Zhang M
%A Cui J
%A Liu Y
%T Preliminary study of proteomic shift from normal to premalignant laryngeal lesions and to laryngeal squamous cell carcinoma
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%J Acta Otolaryngol
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%8 Sep 27, 2008

%A Ban JH
%A Chang J
%A Im GJ
%A Jung HH
%T Proteomic analysis of the rat vestibular nucleus complex following unilateral labyrinthectomy
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%D 2008
%J Acta Otolaryngol
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%8 Oct 21, 2008

%A A. Valsesia
%A I. Mannelli
%A P. Colpo
%A F. Bretagnol
%A F. Rossi
%T Protein Nanopatterns for Improved Immunodetection Sensitivity
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%J ANALYTICAL CHEMISTRY
%P 7336-7340
%V 80
%N 19
%U http://dx.doi.org/10.1021/ac801021z

%A Chen ZY
%A Brown RL
%A Damann KE
%A Cleveland TE
%T Identification of Unique or Elevated Levels of Kernel Proteins in Aflatoxin-Resistant Maize Genotypes Through Proteome Analysis
%0 Journal Article
%D 2002
%J Phytopathology
%P 1084-1094
%V 92
%N 10
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18944219&dopt=Abstract

%A Akon Higuchi
%A Yi-Di Siao
%A Siou-Ting Yang
%A Pei-Vin Hsieh
%A Hisashi Fukushima
%A Yung Chang
%A Ruoh-Chyu Ruaan
%A Wen-Yih Chen
%T Preparation of a DNA Aptamer−Pt Complex and Its Use in the Colorimetric Sensing of Thrombin and Anti-Thrombin Antibodies
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 6580-6586
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%N 17
%U http://dx.doi.org/10.1021/ac8006957

%A Di Michele M
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%A Cicchillitti L
%A Del Boccio P
%A Urbani A
%A Ferlini C
%A Scambia G
%A Donati MB
%A Rotilio D
%T A proteomic approach to paclitaxel chemoresistance in ovarian cancer cell lines
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%J Biochim Biophys Acta
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%8 Oct 10, 2008

%A Coy P
%A Cánovas S
%A Mondéjar I
%A Saavedra MD
%A Romar R
%A Grullón L
%A Matás C
%A Avilés M
%T Oviduct-specific glycoprotein and heparin modulate sperm-zona pellucida interaction during fertilization and contribute to the control of polyspermy
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%J Proc Natl Acad Sci U S A
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%U http://dx.doi.org/10.1073/pnas.0804422105

%A Ping Chen
%A Yao Lu
%A Peter B. Harrington
%T Application of Linear and Nonlinear Discrete Wavelet Transforms to MALDI-MS Measurements of Bacteria for Classification
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 7218-7225
%V 80
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%U http://dx.doi.org/10.1021/ac8004549

%A Yufeng Shen
%A Nikola Tolić
%A Kim K. Hixson
%A Samuel O. Purvine
%A Gordon A. Anderson
%A Richard D. Smith
%T De Novo Sequencing of Unique Sequence Tags for Discovery of Post-Translational Modifications of Proteins
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 7742-7754
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%U http://dx.doi.org/10.1021/ac801123p

%A Kim HJ
%A Yu MH
%A Kim H
%A Byun J
%A Lee C
%T Noninvasive molecular biomarkers for the detection of colorectal cancer
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%A Cheung W
%A Darfler MM
%A Alvarez H
%A Hood BL
%A Conrads TP
%A Habbe N
%A Krizman DB
%A Mollenhauer J
%A Feldmann G
%A Maitra A
%T Application of a global proteomic approach to archival precursor lesions: deleted in malignant brain tumors 1 and tissue transglutaminase 2 are upregulated in pancreatic cancer precursors
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%J Pancreatology
%P 608-16
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%U http://dx.doi.org/10.1159/000161012

%A Kathiresan T
%A Harvey MC
%A Sokolowski BH
%T The use of 2-d gels to identify novel protein-protein interactions in the cochlea
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%A Hu S
%A Arellano M
%A Boontheung P
%A Wang J
%A Zhou H
%A Jiang J
%A Elashoff D
%A Wei R
%A Loo JA
%A Wong DT
%T Salivary Proteomics for Oral Cancer Biomarker Discovery
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%J Clin Cancer Res
%P 6246-6252
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%A Hue T. Tran
%A William C. Plaxton
%T Proteomic analysis of alterations in the secretome of Arabidopsis thaliana suspension cells subjected to nutritional phosphate deficiency
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 4317-4326
%V 8
%N 20
%U http://dx.doi.org/10.1002/pmic.200800292

%A M. P. Marszałł
%A R. Moaddel
%A S. Kole
%A M. Gandhari
%A M. Bernier
%A I. W. Wainer
%T Ligand and Protein Fishing with Heat Shock Protein 90 Coated Magnetic Beads
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 7571-7575
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%U http://dx.doi.org/10.1021/ac801153h

%A Fournier F
%A Gardner EM
%A Kedra DA
%A Donaldson PM
%A Guo R
%A Butcher SA
%A Gould IR
%A Willison KR
%A Klug DR
%T Protein identification and quantification by two-dimensional infrared spectroscopy: Implications for an all-optical proteomic platform
%0 Journal Article
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%J Proc Natl Acad Sci U S A
%P 15352-7
%V 105
%N 40
%U http://dx.doi.org/10.1073/pnas.0805127105

%A Julio E. Celis
%A Pavel Gromov
%A Teresa Cabezon
%A Jose M. A. Moreira
%A Esbern Friis
%A Karin Jirstrom
%A Antonio Llombart-Bosch
%A Vera Timmermans-Wielenga
%A Fritz Rank
%A Irina Gromova
%T 15-Prostaglandin Dehydrogenase Expression Alone or in Combination with ACSM1 Defines a Subgroup of the Apocrine Molecular Subtype of Breast Carcinoma
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 1795-1809
%V 7
%N 10
%U http://www.mcponline.org/cgi/content/abstract/7/10/1795?etoc

%A Harbut MB
%A Velmourougane G
%A Reiss G
%A Chandramohanadas R
%A Greenbaum DC
%T Development of bestatin-based activity-based probes for metallo-aminopeptidases
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%J Bioorg Med Chem Lett
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%8 Sep 10, 2008

%A Kandasamy K
%A Keerthikumar S
%A Goel R
%A Mathivanan S
%A Patankar N
%A Shafreen B
%A Renuse S
%A Pawar H
%A Ramachandra YL
%A Acharya PK
%A Ranganathan P
%A Chaerkady R
%A Prasad TS
%A Pandey A
%T Human Proteinpedia: a unified discovery resource for proteomics research
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%J Nucleic Acids Res
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%8 Oct 23, 2008

%A Nagashima T
%A Oyama M
%A Kozuka-Hata H
%A Yumoto N
%A Sakaki Y
%A Hatakeyama M
%T Phosphoproteome and transcriptome analyses of ErbB ligand-stimulated MCF-7 cells
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%J Cancer Genomics Proteomics
%P 161-8
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%N 3-4
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18820370&dopt=Abstract

%A Ghatpande SS
%A Choudhary PK
%A Quinn CT
%A Goodman SR
%T Pharmaco-Proteomic Study of Hydroxyurea-Induced Modifications in the Sickle Red Blood Cell Membrane Proteome
%0 Journal Article
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%J Exp Biol Med (Maywood)
%P -
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%8 2008 Oct 10

%A Justyna Maria Czarna Bahl
%A Søren Skov Jensen
%A Martin R. Larsen
%A Niels H. H. Heegaard
%T Characterization of the Human Cerebrospinal Fluid Phosphoproteome by Titanium Dioxide Affinity Chromatography and Mass Spectrometry
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 6308-6316
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%N 16
%U http://dx.doi.org/10.1021/ac800835y

%A Cédric Schneider
%A Michel Sablier
%A Bernard Desmazières
%T Characterization by mass spectrometry of an unknown polysiloxane sample used under uncontrolled medical conditions for cosmetic surgery
%0 Journal Article
%D 2008
%J Rapid Communications in Mass Spectrometry
%P 3353-3361
%V 22
%N 21
%U http://dx.doi.org/10.1002/rcm.3741

%A Darren Kessner
%A Matt Chambers
%A Robert Burke
%A David Agus
%A Parag Mallick
%T ProteoWizard: open source software for rapid proteomics tools development
%0 Journal Article
%D 2008
%J Bioinformatics
%P 2534-2536
%V 24
%N 21
%U http://dx.doi.org/10.1093/bioinformatics/btn323

%A Xiao X
%A Yang Y
%A Yang Y
%A Lin J
%A Tang D
%A Liu X
%T Comparative analysis of young panicle proteome in thermo-sensitive genic male-sterile rice Zhu-1S under sterile and fertile conditions
%0 Journal Article
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%J Biotechnol Lett
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%8 2008 Oct 16

%A Robert J. Meier
%A Mark-Steven Steiner
%A Axel Duerkop
%A Otto S. Wolfbeis
%T SDS-PAGE of Proteins Using a Chameleon-Type of Fluorescent Prestain
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%D 2008
%J ANALYTICAL CHEMISTRY
%P 6274-6279
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%U http://dx.doi.org/10.1021/ac800581v

%A Griffiths HR
%A Willetts RS
%A Grant MM
%A Mistry N
%A Lunec J
%A Bevan RJ
%T In vivo vitamin C supplementation increases phosphoinositol transfer protein expression in peripheral blood mononuclear cells from healthy individuals
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%J Br J Nutr
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%8 Oct 24, 2008

%A Lenka Hernychova
%A Rudolf Toman
%A Fedor Ciampor
%A Martin Hubalek
%A Jana Vackova
%A Ales Macela
%A Ludovit Skultety
%T Detection and Identification of Coxiella burnetii Based on the Mass Spectrometric Analyses of the Extracted Proteins
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 7097-7104
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%U http://dx.doi.org/10.1021/ac800788k

%A Das H
%A Swamy N
%A Sahoo G
%A Ahmed SU
%A More T
%T beta-Defensin antibiotic peptides in the innate immunity of the buffalo: in vivo and in vitro studies
%0 Journal Article
%D 2008
%J Altern Lab Anim
%P 429-40
%V 36
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%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18826332&dopt=Abstract