%A Melanie Osl
%A Stephan Dreiseitl
%A Bernhard Pfeifer
%A Klaus Weinberger
%A Helmut Klocker
%A Georg Bartsch
%A Georg Schafer
%A Bernhard Tilg
%A Armin Graber
%A Christian Baumgartner
%T A new rule-based algorithm for identifying metabolic markers in prostate cancer using tandem mass spectrometry
%0 Journal Article
%D 2008
%J Bioinformatics
%P 2908-2914
%V 24
%N 24
%U http://dx.doi.org/10.1093/bioinformatics/btn506

%A Shi-Jin Yin
%A Ling Jiang
%A Hong Yi
%A Song Han
%A Dai-Wen Yang
%A Mai-Li Liu
%A Hui Liu
%A Zhi-Jian Cao
%A Ying-Liang Wu
%A Wen-Xin Li
%T Different Residues in Channel Turret Determining the Selectivity of ADWX-1 Inhibitor Peptide between Kv1.1 and Kv1.3 Channels
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 4890-4897
%V 7
%N 11
%U http://dx.doi.org/10.1021/pr800494a

%A Anthony Collet
%A Pascal Cosette
%A Christophe Beloin
%A Jean-Marc Ghigo
%A Christophe Rihouey
%A Patrice Lerouge
%A Guy-Alain Junter
%A Thierry Jouenne
%T Impact of rpoS Deletion on the Proteome of Escherichia coli Grown Planktonically and as Biofilm
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 4659-4669
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%N 11
%U http://dx.doi.org/10.1021/pr8001723

%A Lu Y
%A Jiao R
%A Chen X
%A Zhong J
%A Ji J
%A Shen P
%T Methylene blue-mediated photodynamic therapy induces apoptosis in HeLa cell
%0 Journal Article
%D 2008
%J J Cell Biochem
%P 1451-60
%V 105
%N 6
%U http://dx.doi.org/10.1002/jcb.21965

%A Andrea Jurisicova
%A Igor Jurisica
%A Thomas Kislinger
%T Advances in ovarian cancer proteomics: the quest for biomarkers and improved therapeutic interventions
%0 Journal Article
%D 2008
%J Expert Review of Proteomics
%P 551-560
%V 5
%N 4
%U http://dx.doi.org/10.1586/14789450.5.4.551

%A Kelli G. Kline
%A Barbara Frewen
%A Michael R. Bristow
%A Michael J. MacCoss
%A Christine C. Wu
%T High Quality Catalog of Proteotypic Peptides from Human Heart
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 5055-5061
%V 7
%N 11
%U http://dx.doi.org/10.1021/pr800239e

%A Affinity Purification
%T In Vivo Interactome of Helicobacter pylori Urease Revealed by Tandem
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 2429-2441
%V 7
%N 12
%U http://www.mcponline.org/cgi/content/abstract/7/12/2429?etoc

%A Xunbao Duan
%A Steven G. Kelsen
%A Salim Merali
%T Proteomic Analysis of Oxidative Stress-Responsive Proteins in Human Pneumocytes: Insight into the Regulation of DJ-1 Expression
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 4955-4961
%V 7
%N 11
%U http://dx.doi.org/10.1021/pr800295j

%A Wastling JM
%A Xia D
%A Sohal A
%A Chaussepied M
%A Pain A
%A Langsley G
%T Proteomes and transcriptomes of Apicomplexa - Where's the message?
%0 Journal Article
%D 2008
%J Int J Parasitol
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%N 
%U http://dx.doi.org/10.1016/j.ijpara.2008.10.003
%8 Nov 1, 2008

%A Govorukhina NI
%A de Vries M
%A Reijmers TH
%A Horvatovich P
%A van der Zee AG
%A Bischoff R
%T Influence of clotting time on the protein composition of serum samples based on LC-MS data
%0 Journal Article
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%J J Chromatogr B Analyt Technol Biomed Life Sci
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%N 
%U http://dx.doi.org/10.1016/j.jchromb.2008.10.029
%8 Nov 1, 2008

%A Ta-tsen Soong
%A Kazimierz O. Wrzeszczynski
%A Burkhard Rost
%T Physical protein-protein interactions predicted from microarrays
%0 Journal Article
%D 2008
%J Bioinformatics
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%N 22
%U http://dx.doi.org/10.1093/bioinformatics/btn498

%T Cover Picture: Electrophoresis 22'2008
%0 Journal Article
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%A Minyue Ma
%A Xuejiang Guo
%A Fuqiang Wang
%A Chun Zhao
%A Zichuan Liu
%A Zhonghua Shi
%A Yufeng Wang
%A Ping Zhang
%A Kemei Zhang
%A Ningling Wang
%A Min Lin
%A Zuomin Zhou
%A Jiayin Liu
%A Qingzhang Li
%A Liu Wang
%A Ran Huo
%A Jiahao Sha
%A Qi Zhou
%T Protein Expression Profile of the Mouse Metaphase-II Oocyte
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 4821-4830
%V 7
%N 11
%U http://dx.doi.org/10.1021/pr800392s

%T From Our Sister Journal: Proteomics 22/2008
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 4614-4615
%V 8
%N 22
%U http://dx.doi.org/10.1002/pmic.200890079

%T Call for Papers
%0 Journal Article
%D 2008
%J ELECTROPHORESIS
%P 4612-4614
%V 29
%N 22
%U http://dx.doi.org/10.1002/elps.200890100

%T Contents: Proteomics 12/2008
%0 Journal Article
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%P -
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%A Cell Autophagy in Vitro and in Vivo
%T Comparative Proteomics Study Reveals That Bacterial CpG Motifs Induce Tumor
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 2311-2322
%V 7
%N 12
%U http://www.mcponline.org/cgi/content/abstract/7/12/2311?etoc

%A Troshin PV
%A Morris C
%A Prince SM
%A Papiz MZ
%T Laboratory information management system for membrane protein structure initiative - from gene to crystal
%0 Journal Article
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%J Mol Membr Biol
%P 639-52
%V 25
%N 8
%U http://dx.doi.org/10.1080/09687680802511766

%A Agnese Viganò
%A Marilena Ripamonti
%A Sara De Palma
%A Daniele Capitanio
%A Michele Vasso
%A Robin Wait
%A Carsten Lundby
%A Paolo Cerretelli
%A Cecilia Gelfi
%T Proteins modulation in human skeletal muscle in the early phase of adaptation to hypobaric hypoxia
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 4668-4679
%V 8
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%U http://dx.doi.org/10.1002/pmic.200800232

%A Kon OL
%A Yip TT
%A Ho MF
%A Chan WH
%A Wong WK
%A Tan SY
%A Ng WH
%A Kam SY
%A Eng AK
%A Ho P
%A Viner R
%A Ong HS
%A Kumarasinghe MP
%T The distinctive gastric fluid proteome in gastric cancer reveals a multi-biomarker diagnostic profile
%0 Journal Article
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%A Zhongqi Zhang
%A Hai Pan
%A Xiaoyu Chen
%T Mass spectrometry for structural characterization of therapeutic antibodies
%0 Journal Article
%D 2009
%J Mass Spectrometry Reviews
%P 147-176
%V 28
%N 1
%U http://dx.doi.org/10.1002/mas.20190

%A Junjie Gao
%A Carolyn J. Cassady
%T Negative ion production from peptides and proteins by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry
%0 Journal Article
%D 2008
%J Rapid Communications in Mass Spectrometry
%P 4066-4072
%V 22
%N 24
%U http://dx.doi.org/10.1002/rcm.3818

%A Marta Sanz-Garcia
%A Inmaculada Lopez-Sanchez
%A Pedro A. Lazo
%T Proteomics Identification of Nuclear Ran GTPase as an Inhibitor of Human VRK1 and VRK2 (Vaccinia-related Kinase) Activities
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 2199-2214
%V 7
%N 11
%U http://www.mcponline.org/cgi/content/abstract/7/11/2199?etoc

%A Simon Rogers
%A Mark Girolami
%A Walter Kolch
%A Katrina M. Waters
%A Tao Liu
%A Brian Thrall
%A H. Steven Wiley
%T Investigating the correspondence between transcriptomic and proteomic expression profiles using coupled cluster models
%0 Journal Article
%D 2008
%J Bioinformatics
%P 2894-2900
%V 24
%N 24
%U http://dx.doi.org/10.1093/bioinformatics/btn553

%A Paul Dowling
%A William Shields
%A Sweta Rani
%A Paula Meleady
%A Michael Henry
%A Per Jeppesen
%A Lorraine O'Driscoll
%A Martin Clynes
%T Proteomic analysis of conditioned media from glucose responsive and glucose non-responsive phenotypes reveals a panel of secreted proteins associated with beta cell dysfunction
%0 Journal Article
%D 2008
%J ELECTROPHORESIS
%P 4141-4149
%V 29
%N 20
%U http://dx.doi.org/10.1002/elps.200800152

%A Christina J. Booker and Ken K.-C. Yeung
%T In-Capillary Protein Enrichment and Removal of Nonbuffering Salts Using Capillary Electrophoresis with Discontinuous Buffers
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 8598-8604
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%N 22
%U http://dx.doi.org/10.1021/ac801487m

%A Sodré CL
%A Chapeaurouge AD
%A Kalume DE
%A de Mendonça Lima L
%A Perales J
%A Fernandes O
%T Proteomic map of Trypanosoma cruzi CL Brener: the reference strain of the genome project
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%J Arch Microbiol
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%8 Nov 11, 2008

%A from Tandem Mass Spectrometry Using an Error-tolerant Algorithm Based on an
%T Unrestrictive Identification of Multiple Post-translational Modifications
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 2452-2463
%V 7
%N 12
%U http://www.mcponline.org/cgi/content/abstract/7/12/2452?etoc

%A Vittoria Cenni
%A Jessika Bertacchini
%A Francesca Beretti
%A Giovanna Lattanzi
%A Alberto Bavelloni
%A Massimo Riccio
%A Maria Ruzzene
%A Oriano Marin
%A Giorgio Arrigoni
%A Veena Parnaik
%A Manfred Wehnert
%A Nadir M. Maraldi
%A Anto de Pol
%A Lucio Cocco
%A Sandra Marmiroli
%T Lamin A Ser404 Is a Nuclear Target of Akt Phosphorylation in C2C12 Cells
%0 Journal Article
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%J JOURNAL OF PROTEOME RESEARCH
%P 4727-4735
%V 7
%N 11
%U http://dx.doi.org/10.1021/pr800262g

%A Wheelock AM
%A Wheelock CE
%T From Genome to Proteome: Integration and proteome completion - 8th Siena meeting
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%D 2008
%J IDrugs
%P 799-802
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%A Dihui Lu
%A Richard Z. Liu
%A Victoria Izumi
%A David Fenstermacher
%A Eric B. Haura
%A John Koomen
%A Steven A. Eschrich
%T IPEP: an in silico tool to examine proteolytic peptides for mass spectrometry
%0 Journal Article
%D 2008
%J Bioinformatics
%P 2801-2802
%V 24
%N 23
%U http://dx.doi.org/10.1093/bioinformatics/btn511

%A Wood TK
%T Molecular approaches in bioremediation
%0 Journal Article
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%J Curr Opin Biotechnol
%P 572-578
%V 19
%N 6
%U http://dx.doi.org/10.1016/j.copbio.2008.10.003

%A Mischak H
%A Coon JJ
%A Novak J
%A Weissinger EM
%A Schanstra JP
%A Dominiczak AF
%T Capillary electrophoresis-mass spectrometry as a powerful tool in biomarker discovery and clinical diagnosis: An update of recent developments
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%J Mass Spectrom Rev
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%8 Oct 30, 2008

%A Kijanka G
%A Ipcho S
%A Baars S
%A Chen H
%A Hadley K
%A Beveridge A
%A Gould E
%A Murphy D
%T Rapid characterization of binding specificity and cross-reactivity of antibodies using recombinant human protein arrays
%0 Journal Article
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%J J Immunol Methods
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%8 Nov 6, 2008

%A Li SJ
%A Peng M
%A Li H
%A Liu BS
%A Wang C
%A Wu JR
%A Li YX
%A Zeng R
%T Sys-BodyFluid: a systematical database for human body fluid proteome research
%0 Journal Article
%D 2008 Oct 31
%J Nucleic Acids Res
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%8 2008 Oct 31

%A Llewellyn R
%A Eisenberg DS
%T Annotating proteins with generalized functional linkages
%0 Journal Article
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%J Proc Natl Acad Sci U S A
%P 17700-5
%V 105
%N 46
%U http://dx.doi.org/10.1073/pnas.0809583105

%A Fu Yang
%A Fang Wang
%A Yingjun Guo
%A Qi Zhou
%A Yue Wang
%A Yixuan Yin
%A Shuhan Sun
%T Enhanced Capacity of Antigen Presentation of HBc-VLP-Pulsed RAW264.7 Cells Revealed by Proteomics Analysis
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 4898-4903
%V 7
%N 11
%U http://dx.doi.org/10.1021/pr800547v

%A Long Term Effects on the Developing Cerebral Cortex
%T Brief Alteration of NMDA or GABAA Receptor-mediated Neurotransmission Has
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 2293-2310
%V 7
%N 12
%U http://www.mcponline.org/cgi/content/abstract/7/12/2293?etoc

%A Daniela Volke
%A Ralf Hoffmann
%T Quantitative proteomics by fluorescent labeling of cysteine residues using a set of two cyanine-based or three rhodamine-based dyes
%0 Journal Article
%D 2008
%J ELECTROPHORESIS
%P 4516-4526
%V 29
%N 22
%U http://dx.doi.org/10.1002/elps.200800092

%A Sheng Wang
%A Bangguo Wei
%A Pengyuan Yang
%A Gang Chen
%T Alternating current-assisted on-plate proteolysis for MALDI-TOF MS peptide mapping
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 4637-4641
%V 8
%N 22
%U http://dx.doi.org/10.1002/pmic.200800401

%A Jingqing Gao
%A Dianjun Liu
%A Zhenxin Wang
%T Microarray-Based Study of Carbohydrate−Protein Binding by Gold Nanoparticle Probes
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 8822-8827
%V 80
%N 22
%U http://dx.doi.org/10.1021/ac8015328

%A Jayson A. Falkner
%A Jarret W. Falkner
%A Anastasia K. Yocum
%A Philip C. Andrews
%T A Spectral Clustering Approach to MS/MS Identification of Post-Translational Modifications
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 4614-4622
%V 7
%N 11
%U http://dx.doi.org/10.1021/pr800226w

%A Emilia Szajli
%A Tamas Feher
%A Katalin F. Medzihradszky
%T Investigating the Quantitative Nature of MALDI-TOF MS
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 2410-2418
%V 7
%N 12
%U http://www.mcponline.org/cgi/content/abstract/7/12/2410?etoc

%A Lovegrove A
%A Salt L
%A Shewry PR
%T Establishing substantial equivalence: proteomics
%0 Journal Article
%D 2009
%J Methods Mol Biol
%P 273-88
%V 478
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%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19009451&dopt=Abstract

%A Tatiana Yu. Samgina
%A Konstantin A. Artemenko
%A Vladimir A. Gorshkov
%A Sergey V. Ogourtsov
%A Roman A. Zubarev
%A Albert T. Lebedev
%T De novo sequencing of peptides secreted by the skin glands of the Caucasian Green Frog Rana ridibunda
%0 Journal Article
%D 2008
%J Rapid Communications in Mass Spectrometry
%P 3517-3525
%V 22
%N 22
%U http://dx.doi.org/10.1002/rcm.3759

%A Mikkel Nissum and Aude L Foucher
%T Analysis of human plasma proteins: a focus on sample collection and separation using free-flow electrophoresis
%0 Journal Article
%D 2008
%J Expert Review of Proteomics
%P 571-587
%V 5
%N 4
%U http://dx.doi.org/10.1586/14789450.5.4.571

%A Bor-Chih Cheng
%A Ching-Ping Chang
%A Yeou-Guang Tsay
%A Ting-Feng Wu
%A Chiung-Yueh Hsu
%A Mao-Tsun Lin
%T Body Cooling Causes Normalization of Cardiac Protein Expression and Function in a Rat Heatstroke Model
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 4935-4945
%V 7
%N 11
%U http://dx.doi.org/10.1021/pr8000089

%A Carsten Jers
%A Boumediene Soufi
%A Christophe Grangeasse
%A Josef Deutscher
%A Ivan Mijakovic
%T Phosphoproteomics in bacteria: towards a systemic understanding of bacterial phosphorylation networks
%0 Journal Article
%D 2008
%J Expert Review of Proteomics
%P 619-627
%V 5
%N 4
%U http://dx.doi.org/10.1586/14789450.5.4.619

%A Xu C
%A Huang B
%T Root proteomic responses to heat stress in two Agrostis grass species contrasting in heat tolerance
%0 Journal Article
%D 2008
%J J Exp Bot
%P 4183-94
%V 59
%N 15
%U http://dx.doi.org/10.1093/jxb/ern258

%A Steve Wilson and Dawn J Mazzatti
%T Current status and future prospects in the search for protein biomarkers of immunosenescence
%0 Journal Article
%D 2008
%J Expert Review of Proteomics
%P 561-569
%V 5
%N 4
%U http://dx.doi.org/10.1586/14789450.5.4.561

%A Wright CA
%A Edelmann M
%A Digleria K
%A Kollnberger S
%A Kramer H
%A McGowan S
%A McHugh K
%A Taylor S
%A Kessler BM
%A Bowness P
%T Ankylosing spondylitis monocytes show upregulation of proteins involved in inflammation and the Ubiquitin Proteasome pathway
%0 Journal Article
%D 2008
%J Ann Rheum Dis
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%N 
%U http://dx.doi.org/10.1136/ard.2008.097204
%8 Oct 24, 2008

%A Joon Shin
%A Woonghee Lee
%A Weontae Lee
%T Structural proteomics by NMR spectroscopy
%0 Journal Article
%D 2008
%J Expert Review of Proteomics
%P 589-601
%V 5
%N 4
%U http://dx.doi.org/10.1586/14789450.5.4.589

%A Paul J. Boersema
%A Thin Thin Aye
%A Toon A. B. van Veen
%A Albert J. R. Heck
%A Shabaz Mohammed
%T Triplex protein quantification based on stable isotope labeling by peptide dimethylation applied to cell and tissue lysates
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 4624-4632
%V 8
%N 22
%U http://dx.doi.org/10.1002/pmic.200800297

%A (Protein Associated with Myc) during Spinal Nociceptive Processing
%T Toponomics Analysis of Functional Interactions of the Ubiquitin Ligase PAM
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 2475-2485
%V 7
%N 12
%U http://www.mcponline.org/cgi/content/abstract/7/12/2475?etoc

%A Aaron G. Poth
%A Hilton C. Deeth
%A Paul F. Alewood
%A John W. Holland
%T Analysis of the Human Casein Phosphoproteome by 2-D Electrophoresis and MALDI-TOF/TOF MS Reveals New Phosphoforms
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 5017-5027
%V 7
%N 11
%U http://dx.doi.org/10.1021/pr800387s

%A Benjamin Mann
%A Milan Madera
%A Quanhu Sheng
%A Haixu Tang
%A Yehia Mechref
%A Milos V. Novotny
%T ProteinQuant Suite: a bundle of automated software tools for label-free quantitative proteomics
%0 Journal Article
%D 2008
%J Rapid Communications in Mass Spectrometry
%P 3823-3834
%V 22
%N 23
%U http://dx.doi.org/10.1002/rcm.3781

%A Chu CY
%A Poon CW
%A Pong CF
%A Pang CP
%A Wang CC
%T Human normal tear proteome
%0 Journal Article
%D 2008
%J Graefes Arch Clin Exp Ophthalmol
%P -
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%N 
%U http://dx.doi.org/10.1007/s00417-008-0974-5
%8 Oct 25, 2008

%A Kreusch S
%A Schulze M
%A Cumme GA
%A Ditze G
%A Moore T
%A Rhode H
%T Searching biomarker candidates in serum using multidimensional native chromatography I. Enhanced separation method
%0 Journal Article
%D 2008
%J J Chromatogr B
%P 567-72
%V 875
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%U http://dx.doi.org/10.1016/j.jchromb.2008.09.040

%A Montazery-Kordy H
%A Miran-Baygi MH
%A Moradi MH
%T A data-mining approach to biomarker identification from protein profiles discrete stationary wavelet transform
%0 Journal Article
%D 2008
%J J Zhejiang Univ Sci B
%P 863-70
%V 9
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%U http://dx.doi.org/10.1631/jzus.B0820163

%A Thurau M
%A Marquardt G
%A Gonin-Laurent N
%A Weinlander K
%A Naschberger E
%A Jochmann R
%A Alkharsah KR
%A Schulz TF
%A Thome M
%A Neipel F
%A Sturzl M
%T The Viral Inhibitor of Apoptosis vFLIP/K13 Protects Endothelial Cells Superoxide-induced Cell Death
%0 Journal Article
%D 2008 Nov 5
%J J Virol
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%8 2008 Nov 5

%A Sara de Mateo
%A Juan Martínez-Heredia
%A Josep Maria Estanyol
%A David Domíguez-Fandos
%A José Manuel Vidal-Taboada
%A José Luis Ballescà
%A Rafael Oliva
%T Marked correlations in protein expression identified by proteomic analysis of human spermatozoa
%0 Journal Article
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%U http://dx.doi.org/10.1002/pmic.200890081

%A Haojie Lu
%A Chenggong Zong
%A Yueju Wang
%A Glen W. Young
%A Ning Deng
%A Pete Souda
%A Xiaohai Li
%A Julian Whitelegge
%A Oliver Drews
%A Peng-Yuan Yang
%A Peipei Ping
%T Revealing the Dynamics of the 20 S Proteasome Phosphoproteome: A Combined CID and Electron Transfer Dissociation Approach
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 2073-2089
%V 7
%N 11
%U http://www.mcponline.org/cgi/content/abstract/7/11/2073?etoc

%A Proteomics
%T Significance Analysis of Spectral Count Data in Label-free Shotgun
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 2373-2385
%V 7
%N 12
%U http://www.mcponline.org/cgi/content/abstract/7/12/2373?etoc

%A Zhulong Chan
%A Qing Wang
%A Xiangbin Xu
%A Xianghong Meng
%A Guozheng Qin
%A Boqiang Li
%A Shiping Tian
%T Functions of defense-related proteins and dehydrogenases in resistance response induced by salicylic acid in sweet cherry fruits at different maturity stages
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 4791-4807
%V 8
%N 22
%U http://dx.doi.org/10.1002/pmic.200701155

%A Young-An Bae
%A Yeon-Tack Jeong
%A Joon-Yong Chung
%A Seon-Hee Kim
%A Jagadish Mahanta
%A Zheng Feng
%A Chom-Kyu Chong
%A Tong-Soo Kim
%A Yoon Kong
%T A recombinant chimeric antigen toward a standardized serodiagnosis of Taenia solium neurocysticercosis
%0 Journal Article
%D 2008
%J PROTEOMICS - CLINICAL APPLICATIONS
%P 1596-1610
%V 2
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%U http://dx.doi.org/10.1002/prca.200800084

%A Saheki T
%A Ito H
%A Sekiguchi A
%A Nishina A
%A Sugiyama T
%A Izumi T
%A Kojima I
%T Proteomic analysis identifies proteins that continue to grow hepatic stem-like cells without differentiation
%0 Journal Article
%D 2008
%J Cytotechnology
%P 137-43
%V 57
%N 2
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19003158&dopt=Abstract

%A Pragya Singh
%A Scott A. Shaffer
%A Alexander Scherl
%A Carol Holman
%A Richard A. Pfuetzner
%A Theodore J. Larson Freeman
%A Samuel I. Miller
%A Patricia Hernandez
%A Ron D. Appel
%A David R. Goodlett
%T Characterization of Protein Cross-Links via Mass Spectrometry and an Open-Modification Search Strategy
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 8799-8806
%V 80
%N 22
%U http://dx.doi.org/10.1021/ac801646f

%A Lujian Liao
%A Daniel B. McClatchy
%A Sung Kyu Park
%A Tao Xu
%A Bingwen Lu
%A John R. Yates III
%T Quantitative Analysis of Brain Nuclear Phosphoproteins Identifies Developmentally Regulated Phosphorylation Events
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 4743-4755
%V 7
%N 11
%U http://dx.doi.org/10.1021/pr8003198

%A Julio E. Celis
%A Steven A. Carr
%A Ralph A. Bradshaw
%T New Guidelines for Clinical Proteomics Manuscripts
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 2071-2072
%V 7
%N 11
%U http://www.mcponline.org/cgi/content/full/7/11/2071?etoc

%A Nguyen TT
%A Michaud D
%A Cloutier C
%T A proteomic analysis of the aphid Macrosiphum euphorbiae under heat and radiation stress
%0 Journal Article
%D 2008
%J Insect Biochem Mol Biol
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%A Wei-Tao Cong
%A Sun-Young Hwang
%A Li-Tai Jin
%A Jung-Kap Choi
%T Sensitive fluorescent staining for proteomic analysis of proteins in 1-D and 2-D SDS-PAGE and its comparison with SYPRO Ruby by PMF
%0 Journal Article
%D 2008
%J ELECTROPHORESIS
%P 4304-4315
%V 29
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%U http://dx.doi.org/10.1002/elps.200800150

%A Daehee Hwang
%A Ning Zhang
%A Hookeun Lee
%A Eugene Yi
%A Hui Zhang
%A Inyoul Y. Lee
%A Leroy Hood
%A Ruedi Aebersold
%T MS-BID: a Java package for label-free LC-MS-based comparative proteomic analysis
%0 Journal Article
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%J Bioinformatics
%P 2641-2642
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%U http://dx.doi.org/10.1093/bioinformatics/btn491

%A Eizadora T. Yu
%A Arie Hawkins
%A Irwin D. Kuntz
%A Larry A. Rahn
%A Andrew Rothfuss
%A Kenneth Sale
%A Malin M. Young
%A Christine L. Yang
%A Carmen M. Pancerella
%A Daniele Fabris
%T The Collaboratory for MS3D: A New Cyberinfrastructure for the Structural Elucidation of Biological Macromolecules and Their Assemblies Using Mass Spectrometry-Based Approaches
%0 Journal Article
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%J JOURNAL OF PROTEOME RESEARCH
%P 4848-4857
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%U http://dx.doi.org/10.1021/pr800443f

%A Buhimschi IA
%A Zhao G
%A Funai EF
%A Harris N
%A Sasson IE
%A Bernstein IM
%A Saade GR
%A Buhimschi CS
%T Proteomic profiling of urine identifies specific fragments of SERPINA1 albumin as biomarkers of preeclampsia
%0 Journal Article
%D 2008
%J Am J Obstet Gynecol
%P 551.e1-16
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%U http://dx.doi.org/10.1016/j.ajog.2008.07.006

%A P. Aaron Kirkland
%A Matthew A. Humbard
%A Charles J. Daniels
%A Julie A. Maupin-Furlow
%T Shotgun Proteomics of the Haloarchaeon Haloferax volcanii
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 5033-5039
%V 7
%N 11
%U http://dx.doi.org/10.1021/pr800517a

%A Nagarjuna Nagaraj
%A Aiping Lu
%A Matthias Mann
%A Jacek R. Wiśniewski
%T Detergent-Based but Gel-Free Method Allows Identification of Several Hundred Membrane Proteins in Single LC-MS Runs
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 5028-5032
%V 7
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%U http://dx.doi.org/10.1021/pr800412j

%A Gorden Redlich
%A Ulrich M. Zanger
%A Stephan Riedmaier
%A Nicolai Bache
%A Anders B. M. Giessing
%A Martin Eisenacher
%A Christian Stephan
%A Helmut E. Meyer
%A Ole N. Jensen
%A Katrin Marcus
%T Distinction between Human Cytochrome P450 (CYP) Isoforms and Identification of New Phosphorylation Sites by Mass Spectrometry
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 4678-4688
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%U http://dx.doi.org/10.1021/pr800231w

%A Alexander Schmidt
%A Nils Gehlenborg
%A Bernd Bodenmiller
%A Lukas N. Mueller
%A Dave Campbell
%A Markus Mueller
%A Ruedi Aebersold
%A Bruno Domon
%T An Integrated, Directed Mass Spectrometric Approach for In-depth Characterization of Complex Peptide Mixtures
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 2138-2150
%V 7
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%U http://www.mcponline.org/cgi/content/abstract/7/11/2138?etoc

%T Proteomics today: Bioinformatics at its best. Proteomics and Bioinformatics - an inseparable couple
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 4616-4617
%V 8
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%U http://dx.doi.org/10.1002/pmic.200890080

%A Latterich M
%A Abramovitz M
%A Leyland-Jones B
%T Proteomics: new technologies and clinical applications
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%J Eur J Cancer
%P 2737-41
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%A Cruz-Monteagudo M
%A Munteanu CR
%A Borges F
%A Cordeiro MN
%A Uriarte E
%A González-Díaz H
%T Quantitative Proteome-Property Relationships (QPPRs). Part 1: Finding biomarkers of organic drugs with mean Markov connectivity indices of spiral networks of blood mass spectra
%0 Journal Article
%D 2008
%J Bioorg Med Chem
%P 9684-93
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%N 22
%U http://dx.doi.org/10.1016/j.bmc.2008.10.004

%A Henry Rodriguez
%T International Summit on Proteomics Data Release and Sharing Policy
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 4609-4609
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%U http://dx.doi.org/10.1021/pr800779q

%A Shiyong Liu
%A Ying Gao
%A Ilya A. Vakser
%T DOCKGROUND protein-protein docking decoy set
%0 Journal Article
%D 2008
%J Bioinformatics
%P 2634-2635
%V 24
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%U http://dx.doi.org/10.1093/bioinformatics/btn497

%A Keyvan Aghaei
%A Ali Akbar Ehsanpour
%A Setsuko Komatsu
%T Proteome Analysis of Potato under Salt Stress
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 4858-4868
%V 7
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%U http://dx.doi.org/10.1021/pr800460y

%A William Burkitt
%A Gavin O'Connor
%T Assessment of the repeatability and reproducibility of hydrogen/deuterium exchange mass spectrometry measurements
%0 Journal Article
%D 2008
%J Rapid Communications in Mass Spectrometry
%P 3893-3901
%V 22
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%U http://dx.doi.org/10.1002/rcm.3794

%A Coffman FD
%T Chitinase 3-Like-1 (CHI3L1): a putative disease marker at the interface of proteomics and glycomics
%0 Journal Article
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%J Crit Rev Clin Lab Sci
%P 531-62
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%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19003601&dopt=Abstract

%A Naomi Walsh
%A Paul Dowling
%A Norma O'Donovan
%A Michael Henry
%A Paula Meleady and Martin Clynes
%T Aldehyde dehydrogenase 1A1 and gelsolin identified as novel invasion-modulating factors in conditioned medium of pancreatic cancer cells
%0 Journal Article
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%J Journal of Proteomics
%P 561-571
%V 71
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%U http://www.sciencedirect.com/science?_ob=GatewayURL&_method=citationSearch&_urlVersion=4&_origin=SDVIALERTASCII&_version=1&_uoikey=B8JDC-4THSXBT-1&md5=ba9e5b4b901668827e3d96ddaf8e0e26

%A Pike LJ
%T The challenge of lipid rafts
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%J J Lipid Res
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%A Louise N. Paton
%A Juliet A. Gerrard and Warren G. Bryson
%T Investigations into charge heterogeneity of wool intermediate filament proteins
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%J Journal of Proteomics
%P 513-529
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%A Pyong-Gon Moon
%A Hyun-Ho Hwang
%A Yong Chool Boo
%A Joseph Kwon
%A Je-Yoel Cho
%A Moon-Chang Baek
%T Identification of rat urinary glycoproteome captured by three lectins using gel and LC-based proteomics
%0 Journal Article
%D 2008
%J ELECTROPHORESIS
%P 4324-4331
%V 29
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%U http://dx.doi.org/10.1002/elps.200800070

%A Hua Wang
%A Jun Wang
%A Charles Timchalk
%A Yuehe Lin
%T Magnetic Electrochemical Immunoassays with Quantum Dot Labels for Detection of Phosphorylated Acetylcholinesterase in Plasma
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 8477-8484
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%U http://dx.doi.org/10.1021/ac801211s

%A Elena Albè
%A Jin-Hong Chang
%A Nathalie F. Azar
%A Alexander R. Ivanov
%A Dimitri T. Azar
%T Proteomic Analysis of the Hyaloid Vascular System Regression during Ocular Development
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 4904-4913
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%U http://dx.doi.org/10.1021/pr800551m

%A Omer Deutsch
%A Yoram Fleissig
%A Batia Zaks
%A Guy Krief
%A Doron J. Aframian
%A Aaron Palmon
%T An approach to remove alpha amylase for proteomic analysis of low abundance biomarkers in human saliva
%0 Journal Article
%D 2008
%J ELECTROPHORESIS
%P 4150-4157
%V 29
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%U http://dx.doi.org/10.1002/elps.200800207

%A Lustgarten JL
%A Gopalakrishnan V
%A Grover H
%A Visweswaran S
%T Improving classification performance with discretization on biomedical datasets
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%J AMIA Annu Symp Proc
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%A Hiroshi Kawasaki
%A Akiko Okayama
%A Yuko Iwafune
%A Shota Yahagi
%A Noriaki Arakawa
%A Hisashi Hirano
%T Multiplex detection and identification of proteins on a PVDF membrane blocked with a synthetic polymer-based reagent
%0 Journal Article
%D 2008
%J ELECTROPHORESIS
%P 4377-4380
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%U http://dx.doi.org/10.1002/elps.200800200

%A Pan Z
%A Guan R
%A Zhu S
%A Deng X
%T Proteomic analysis of somatic embryogenesis in Valencia sweet orange sinensis Osbeck)
%0 Journal Article
%D 2008 Nov 7
%J Plant Cell Rep
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%8 2008 Nov 7

%A Paul J. Trim
%A Claire M. Henson
%A Jennie L. Avery
%A Andrew McEwen
%A Marten F. Snel
%A Emmanuelle Claude
%A Peter S. Marshall
%A Andrew West
%A Alessandra P. Princivalle
%A Malcolm R. Clench
%T Matrix-Assisted Laser Desorption/Ionization-Ion Mobility Separation-Mass Spectrometry Imaging of Vinblastine in Whole Body Tissue Sections
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 8628-8634
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%U http://dx.doi.org/10.1021/ac8015467

%A Xuequn Chen
%A Peter J. Ulintz
%A Eric S. Simon
%A John A. Williams
%A Philip
%T Global Topology Analysis of Pancreatic Zymogen Granule Membrane Proteins
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 2323-2336
%V 7
%N 12
%U http://www.mcponline.org/cgi/content/abstract/7/12/2323?etoc

%A Jentaie Shiea
%A Yi-Tzu Cho
%A Yen-Hsiu Lin
%A Chin-Wen Chang
%A Li-Hua Lo
%A Yi-Chern Lee
%A Hung-Lung Ke
%A Wen-Jeng Wu
%A Deng-Chyang Wu
%T Using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry to rapidly screen for albuminuria
%0 Journal Article
%D 2008
%J Rapid Communications in Mass Spectrometry
%P 3754-3760
%V 22
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%U http://dx.doi.org/10.1002/rcm.3792

%A Seesandra V. Rajagopala
%A Johannes Goll
%A N.D. Deve Gowda
%A Kumar C. Sunil
%A Bjorn Titz
%A Arnab Mukherjee
%A Sharmila S. Mary
%A Naresh Raviswaran
%A Chetan S. Poojari
%A Srinivas Ramachandra
%A Svetlana Shtivelband
%A Stephen M. Blazie
%A Julia Hofmann
%A Peter Uetz
%T MPI-LIT: a literature-curated dataset of microbial binary protein--protein interactions
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%D 2008
%J Bioinformatics
%P 2622-2627
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%U http://dx.doi.org/10.1093/bioinformatics/btn481

%A Das S
%A Maeso PA
%A Becker AM
%A Prosser JD
%A Adam BL
%A Kountakis SE
%T Proteomics blood testing to distinguish chronic rhinosinusitis subtypes
%0 Journal Article
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%J Laryngoscope
%P 2231-4
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%U http://dx.doi.org/10.1097/MLG.0b013e318182f7f4

%A Manually Validating Selected Results
%T Peptizer, a Tool for Assessing False Positive Peptide Identifications and
%0 Journal Article
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%J Mol Cell Proteomics
%P 2364-2372
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%U http://www.mcponline.org/cgi/content/abstract/7/12/2364?etoc

%A Förster JR
%A Lochnit G
%A Stöhr H
%T Proteomic analysis of the membrane palmitoylated protein-4 (MPP4)-associated protein complex in the retina
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%J Exp Eye Res
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%8 Oct 9, 2008

%A Anne-Claude Gavin
%A Ruedi Aebersold
%A Albert J. R. Heck
%T Meeting Report on the 7th World Congress of the Human Proteome Organization (HUPO) in Amsterdam: Proteome Biology
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%J Mol Cell Proteomics
%P 2288-2291
%V 7
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%U http://www.mcponline.org/cgi/content/abstract/7/11/2288?etoc

%A Murray Hackett
%T Science, marketing and wishful thinking in quantitative proteomics
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%J PROTEOMICS
%P 4618-4623
%V 8
%N 22
%U http://dx.doi.org/10.1002/pmic.200800358

%A Kevin M. Downard
%A Bethny Morrissey
%A Alexander B. Schwahn
%T Mass spectrometry analysis of the influenza virus
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%J Mass Spectrometry Reviews
%P 35-49
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%U http://dx.doi.org/10.1002/mas.20194

%A Kim HR
%A Naruse K
%A Lee HR
%A Han RX
%A Park CS
%A Jin DI
%T Abnormal Expression of TIMP-2, SOD, Vimentin and PAI Proteins in Cloned Bovine Placentae
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%J Reprod Domest Anim
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%A Annalisa Vilasi
%A Pedro R. Cutillas
%A Robert J. Unwin
%T Application of proteomic techniques to the study of urine and renal tissue
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%J PROTEOMICS - CLINICAL APPLICATIONS
%P 1564-1574
%V 2
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%U http://dx.doi.org/10.1002/prca.200800035

%A Almudena Pacheco
%A Sandrine Reigadas
%A Encarnación Martínez-Salas
%T Riboproteomic analysis of polypeptides interacting with the internal ribosome-entry site element of foot-and-mouth disease viral RNA
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%J PROTEOMICS
%P 4782-4790
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%U http://dx.doi.org/10.1002/pmic.200800338

%A Lustgarten JL
%A Visweswaran S
%A Grover H
%A Kimmel CP
%A Ryberg HL
%A Bowser RP
%A Gopalakrishnan V
%A Hogan W
%T Using a novel resource to decrease proteomic biomarker identification time
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%T Cover Picture: Proteomics 22/2008
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%A Bhasi A
%A Philip P
%A Manikandan V
%A Senapathy P
%T ExDom: an integrated database for comparative analysis of the structures of protein domains in eukaryotes
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%J Nucleic Acids Res
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%8 2008 Nov 4

%A Carberry S
%A Doyle S
%T Proteomic studies in biomedically and industrially relevant fungi
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%J Cytotechnology
%P 95-100
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%A Caroline Cieniewski-Bernard
%A Paul Mulder
%A Jean-Paul Henry
%A Hervé Drobecq
%A Emilie Dubois
%A Gwënaël Pottiez
%A Christian Thuillez
%A Philippe Amouyel
%A Vincent Richard
%A Florence Pinet
%T Proteomic Analysis of Left Ventricular Remodeling in an Experimental Model of Heart Failure
%0 Journal Article
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%J JOURNAL OF PROTEOME RESEARCH
%P 5004-5016
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%N 11
%U http://dx.doi.org/10.1021/pr800409u

%A Isoforms Are Specifically Recognized by IgG Autoantibodies in Multiple
%T Transketolase and 2',3'-Cyclic-nucleotide 3'-Phosphodiesterase Type I
%0 Journal Article
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%J Mol Cell Proteomics
%P 2337-2349
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%U http://www.mcponline.org/cgi/content/abstract/7/12/2337?etoc

%A Morris CF
%A Castro MS
%A Fontes W
%T Neutrophil proteome: lessons from different standpoints
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%J Protein Pept Lett
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%A Rohit G. Saldanha
%A Ning Xu
%A Mark P. Molloy
%A Duncan A. Veal
%A Mark S. Baker
%T Differential Proteome Expression Associated with Urokinase Plasminogen Activator Receptor (uPAR) Suppression in Malignant Epithelial Cancer
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%J JOURNAL OF PROTEOME RESEARCH
%P 4792-4806
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%U http://dx.doi.org/10.1021/pr800357h

%A Katie Cottingham
%T Proteomics researchers now agree on some aspects of data sharing
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%J JOURNAL OF PROTEOME RESEARCH
%P 4612-4612
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%U http://dx.doi.org/10.1021/pr800781d

%A Vanessa Dehennaut
%A Marie-Christine Slomianny
%A Adeline Page
%A Anne-Sophie Vercoutter-Edouart
%A Catherine Jessus
%A Jean-Claude Michalski
%A Jean-Pierre Vilain
%A Jean-Francois Bodart
%A Tony Lefebvre
%T Identification of Structural and Functional O-Linked N-Acetylglucosamine-bearing Proteins in Xenopus laevis Oocyte
%0 Journal Article
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%J Mol Cell Proteomics
%P 2229-2245
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%U http://www.mcponline.org/cgi/content/abstract/7/11/2229?etoc

%A Yao HP
%A Xiang XW
%A Chen L
%A Guo AQ
%A He FQ
%A Lan LP
%A Lu XM
%A Wu XF
%T Identification of the proteome of the midgut of silkworm, Bombyx mori L. by multidimensional liquid chromatography LTQ-Orbitrap mass spectrometry
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%J Biosci Rep
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%A Navratil V
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%A Meyniel L
%A Delmotte S
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%A Andre P
%A Lotteau V
%A Rabourdin-Combe C
%T VirHostNet: a knowledge base for the management and the analysis of virus-host interaction networks
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%J Nucleic Acids Res
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%8 2008 Nov 4

%A Sitaraman K
%A Chatterjee DK
%T High-throughput protein expression using cell-free system
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%A Gu F
%A Wen Y
%A Fan H
%A Hu J
%A Hu Y
%A Zhao Z
%T Translational responses of NR2B overexpression in the cerebral cortex of transgenic mice: A liquid chromatography-based proteomic approach
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%J Brain Res
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%A Helen Kim
%A Mark B. Cope
%A Richie Herring
%A Gloria Robinson
%A Landon Wilson
%A Grier P. Page
%A Stephen Barnes
%T 2D Difference Gel Electrophoresis of Prepubertal and Pubertal Rat Mammary Gland Proteomes
%0 Journal Article
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%J JOURNAL OF PROTEOME RESEARCH
%P 4638-4650
%V 7
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%U http://dx.doi.org/10.1021/pr800121b

%A Ying Ding
%A Hyungwon Choi
%A Alexey I. Nesvizhskii
%T Adaptive Discriminant Function Analysis and Reranking of MS/MS Database Search Results for Improved Peptide Identification in Shotgun Proteomics
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 4878-4889
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%U http://dx.doi.org/10.1021/pr800484x

%A John Wiley & Sons
%A Ltd
%T Current literature in mass spectrometry
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%J Journal of Mass Spectrometry
%P 1711-1720
%V 43
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%U http://dx.doi.org/10.1002/jms.1309

%A Jiusheng Yan
%A Jesper V. Olsen
%A Kang-Sik Park
%A Weiyan Li
%A Wolfgang Bildl
%A Uwe Schulte
%A Richard W. Aldrich
%A Bernd Fakler
%A James S. Trimmer
%T Profiling the Phospho-status of the BKCa Channel {alpha} Subunit in Rat Brain Reveals Unexpected Patterns and Complexity
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 2188-2198
%V 7
%N 11
%U http://www.mcponline.org/cgi/content/abstract/7/11/2188?etoc

%A Laura M. López-Sánchez
%A Fernando J. Corrales
%A Raúl González
%A Gustavo Ferrín
%A Juan R. Muñoz-Castañeda
%A Isidora Ranchal
%A Ana B. Hidalgo
%A Javier Briceño
%A Pedro López-Cillero
%A Miguel A. Gómez
%A Manuel De La Mata
%A Jordi Muntané
%A Antonio Rodríguez-Ariza
%T Alteration of S-nitrosothiol homeostasis and targets for protein S-nitrosation in human hepatocytes
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 4709-4720
%V 8
%N 22
%U http://dx.doi.org/10.1002/pmic.200700313

%A Denise L. Doolan
%A Yunxiang Mu
%A Berkay Unal
%A Suman Sundaresh
%A Siddiqua Hirst
%A Conrad Valdez
%A Arlo Randall
%A Douglas Molina
%A Xiaowu Liang
%A Daniel A. Freilich
%A J. Aggrey Oloo
%A Peter L. Blair
%A Joao C. Aguiar
%A Pierre Baldi
%A D. Huw Davies
%A Philip L. Felgner
%T Profiling humoral immune responses to P. falciparum infection with protein microarrays
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 4680-4694
%V 8
%N 22
%U http://dx.doi.org/10.1002/pmic.200800194

%A Francesco Botre
%T Mass spectrometry and illicit drug testing: analytical challenges of the anti-doping laboratories
%0 Journal Article
%D 2008
%J Expert Review of Proteomics
%P 535-539
%V 5
%N 4
%U http://dx.doi.org/10.1586/14789450.5.4.535

%A Tom Grunert
%A Martina Marchetti-Deschmann
%A Ingrid Miller
%A Mathias Müller
%A Günter Allmaier
%T Comparing the applicability of CGE-on-the-chip and SDS-PAGE for fast pre-screening of mouse serum samples prior to proteomics analysis
%0 Journal Article
%D 2008
%J ELECTROPHORESIS
%P 4332-4340
%V 29
%N 21
%U http://dx.doi.org/10.1002/elps.200800035

%A Sriram Natarajan
%A Andrew Hatch
%A David G. Myszka
%A Bruce K. Gale
%T Optimal Conditions for Protein Array Deposition Using Continuous Flow
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 8561-8567
%V 80
%N 22
%U http://dx.doi.org/10.1021/ac8014609

%A Maxie Kohler
%A Klaus Püschel
%A Dimitri Sakharov
%A Alexander Tonevitskiy
%A Wilhelm Schänzer
%A Mario Thevis
%T Detection of recombinant growth hormone in human plasma by a 2-D PAGE method
%0 Journal Article
%D 2008
%J ELECTROPHORESIS
%P 4495-4502
%V 29
%N 22
%U http://dx.doi.org/10.1002/elps.200800221

%A Gagne JP
%A Isabelle M
%A Lo KS
%A Bourassa S
%A Hendzel MJ
%A Dawson VL
%A Dawson TM
%A Poirier GG
%T Proteome-wide identification of poly(ADP-ribose) binding proteins and poly(ADP-ribose)-associated protein complexes
%0 Journal Article
%D 2008 Nov 3
%J Nucleic Acids Res
%P -
%V 
%N 
%U http://dx.doi.org/10.1093/nar/gkn771
%8 2008 Nov 3

%A Liu F
%A Chen Z
%A Wang J
%A Shao X
%A Cui Z
%A Yang C
%A Zhu Z
%A Xiong D
%T Overexpression of cell surface cytokeratin 8 in multidrug-resistant MCF-7/MX cells enhances cell adhesion to the extracellular matrix
%0 Journal Article
%D 2008
%J Neoplasia
%P 1275-84
%V 10
%N 11
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18953437&dopt=Abstract

%A Ziad El Rassi
%T Emphasis on Proteomics and Related Topics
%0 Journal Article
%D 
%J 
%P -
%V 
%N 
%U http://dx.doi.org/10.1002/elps.200890095

%A Aurélia Battesti
%A Emmanuelle Bouveret
%T Improvement of bacterial two-hybrid vectors for detection of fusion proteins and transfer to pBAD-tandem affinity purification, calmodulin binding peptide, or 6-histidine tag vectors
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 4768-4771
%V 8
%N 22
%U http://dx.doi.org/10.1002/pmic.200800270

%T PROTEOMICS - Clinical Applications Acknowledgements
%0 Journal Article
%D 2008
%J PROTEOMICS - CLINICAL APPLICATIONS
%P 1675-1676
%V 2
%N 12
%U http://dx.doi.org/10.1002/prca.200890035

%A Lucia De Franceschi
%A Andrea Biondani
%A Franco Carta
%A Franco Turrini
%A Carlo Laudanna
%A Renzo Deana
%A Anna Maria Brunati
%A Loris Turretta
%A Achille Iolascon
%A Silverio Perrotta
%A Ari Elson
%A Cristina Bulato
%A Carlo Brugnara
%T PTP? has a critical role in signaling transduction pathways and phosphoprotein network topology in red cells
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 4695-4708
%V 8
%N 22
%U http://dx.doi.org/10.1002/pmic.200700596

%A Alam SI
%A Bansod S
%A Singh L
%T Immunization against Clostridium perfringens cells elicits protection against Clostridium tetani in mouse model: identification of cross-reactive proteins using proteomic methodologies
%0 Journal Article
%D 
%J 
%P -
%V 
%N 
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19000325&dopt=Abstract

%A Alves G
%A Ogurtsov AY
%A Yu YK
%T RAId_DbS: mass-spectrometry based peptide identification web server with knowledge integration
%0 Journal Article
%D 
%J 
%P -
%V 
%N 
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18954448&dopt=Abstract

%A Luciano-Montalvo C
%A Ciborowski P
%A Duan F
%A Gendelman HE
%A Meléndez LM
%T Proteomic Analyses Associate Cystatin B with Restricted HIV-1 Replication in Placental Macrophages
%0 Journal Article
%D 2008
%J Placenta
%P 1016-23
%V 29
%N 12
%U http://dx.doi.org/10.1016/j.placenta.2008.09.005

%A Aleksey V. Tolmachev
%A Matthew E. Monroe
%A Samuel O. Purvine
%A Ronald J. Moore
%A Navdeep Jaitly
%A Joshua N. Adkins
%A Gordon A. Anderson
%A Richard D. Smith
%T Characterization of Strategies for Obtaining Confident Identifications in Bottom-Up Proteomics Measurements Using Hybrid FTMS Instruments
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 8514-8525
%V 80
%N 22
%U http://dx.doi.org/10.1021/ac801376g

%A Scott E. Warder
%A Lora A. Tucker
%A Shaun M. McLoughlin
%A Tamara J. Strelitzer
%A Joseph L. Meuth
%A Qian Zhang
%A George S. Sheppard
%A Paul L. Richardson
%A Rick Lesniewski
%A Steven K. Davidsen
%A Randy L. Bell
%A John C. Rogers
%A Jieyi Wang
%T Discovery, Identification, and Characterization of Candidate Pharmacodynamic Markers of Methionine Aminopeptidase-2 Inhibition
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 4807-4820
%V 7
%N 11
%U http://dx.doi.org/10.1021/pr800388p

%A Guoan Zhang
%A David Fenyö
%A Thomas A. Neubert
%T Screening for EphB Signaling Effectors Using SILAC with a Linear Ion Trap-Orbitrap Mass Spectrometer
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 4715-4726
%V 7
%N 11
%U http://dx.doi.org/10.1021/pr800255a

%A Finnie C
%A Bagge M
%A Steenholdt T
%A Ostergaard O
%A Bak-Jensen KS
%A Backes G
%A Jensen A
%A Giese H
%A Larsen J
%A Roepstorff P
%A Svensson B
%T Integration of the barley genetic and seed proteome maps for chromosome 1H, 2H, 3H, 5H and 7H
%0 Journal Article
%D 2008
%J Funct Integr Genomics
%P -
%V 
%N 
%U http://dx.doi.org/10.1007/s10142-008-0101-z
%8 Nov 14, 2008

%A Mónica Martínez-Fernández
%A Ana M. Rodríguez-Piñeiro
%A Eliandre Oliveira
%A María Páez de la Cadena
%A Emilio Rolán-Alvarez
%T Proteomic Comparison between Two Marine Snail Ecotypes Reveals Details about the Biochemistry of Adaptation
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 4926-4934
%V 7
%N 11
%U http://dx.doi.org/10.1021/pr700863e

%A Kumari S
%A Kumar A
%A Samant M
%A Singh N
%A Dube A
%T Discovery of novel vaccine candidates and drug targets against visceral leishmaniasis using proteomics and transcriptomics
%0 Journal Article
%D 2008
%J Curr Drug Targets
%P 938-47
%V 9
%N 11
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18991606&dopt=Abstract

%A Frédérique Baruthio
%A Manfredo Quadroni
%A Curzio Rüegg
%A Agnese Mariotti
%T Proteomic analysis of membrane rafts of melanoma cells identifies protein patterns characteristic of the tumor progression stage
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 4733-4747
%V 8
%N 22
%U http://dx.doi.org/10.1002/pmic.200800169

%A Vallejo-Cordoba B
%A Gonzalez-Cordova AF
%A Olguin-Arredondo HA
%T Application of proteomics to the characterization of beta-lactoglobulin variants by capillary electrophoresis-mass spectrometry and nano-liquid chromatography-mass spectrometry-mass spectrometry
%0 Journal Article
%D 2008
%J J Capill Electrophor Microchip Technol
%P 87-92
%V 10
%N 5-6
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18982908&dopt=Abstract

%A Franck Bazile
%A Jean-Philippe Gagné
%A Geneviève Mercier
%A Ken Sin Lo
%A Aude Pascal
%A Julian Vasilescu
%A Daniel Figeys
%A Guy G. Poirier
%A Jacek Z. Kubiak
%A Franck Chesnel
%T Differential Proteomic Screen To Evidence Proteins Ubiquitinated upon Mitotic Exit in Cell-Free Extract of Xenopus laevis Embryos
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 4701-4714
%V 7
%N 11
%U http://dx.doi.org/10.1021/pr800250x

%A Sun B
%A Zhang S
%A Zhang D
%A Li Y
%A Zhao X
%A Luo Y
%A Guo Y
%T Identification of metastasis-related proteins and their clinical triple-negative human breast cancer
%0 Journal Article
%D 2008
%J Clin Cancer Res
%P 7050-9
%V 14
%N 21
%U http://dx.doi.org/10.1158/1078-0432.CCR-08-0520

%A Corey E. Bakalarski
%A Joshua E. Elias
%A Judit Villén
%A Wilhelm Haas
%A Scott A. Gerber
%A Patrick A. Everley
%A Steven P. Gygi
%T The Impact of Peptide Abundance and Dynamic Range on Stable-Isotope-Based Quantitative Proteomic Analyses
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 4756-4765
%V 7
%N 11
%U http://dx.doi.org/10.1021/pr800333e

%A Koehn J
%A Hunt I
%T High-Throughput Protein Production (HTPP): A Review of Enabling Expedite Protein Production
%0 Journal Article
%D 2009
%J Methods Mol Biol
%P 1-18
%V 498
%N 
%U http://dx.doi.org/10.1007/978-1-59745-196-3_1

%A Quanhu Sheng
%A Yehia Mechref
%A Yixue Li
%A Milos V. Novotny
%A Haixu Tang
%T A computational approach to characterizing bond linkages of glycan isomers using matrix-assisted laser desorption/ionization tandem time-of-flight mass spectrometry
%0 Journal Article
%D 2008
%J Rapid Communications in Mass Spectrometry
%P 3561-3569
%V 22
%N 22
%U http://dx.doi.org/10.1002/rcm.3765

%A Lubke T
%A Lobel P
%A Sleat DE
%T Proteomics of the lysosome
%0 Journal Article
%D 2008 Oct 15
%J Biochim Biophys Acta
%P -
%V 
%N 
%U http://dx.doi.org/10.1016/j.bbamcr.2008.09.018
%8 2008 Oct 15

%A Janet S. Rader
%A James P. Malone
%A Julia Gross
%A Petra Gilmore
%A Rebecca A. Brooks
%A Loan Nguyen
%A Dan L. Crimmins
%A Sheng Feng
%A Jason D. Wright
%A Nicholas Taylor
%A Israel Zighelboim
%A Margo C. Funk
%A Phyllis C. Huettner
%A Jack H. Ladenson
%A David Gius
%A R. Reid Townse
%T A unified sample preparation protocol for proteomic and genomic profiling of cervical swabs to identify biomarkers for cervical cancer screening
%0 Journal Article
%D 2008
%J PROTEOMICS - CLINICAL APPLICATIONS
%P 1658-1669
%V 2
%N 12
%U http://dx.doi.org/10.1002/prca.200780146

%A Stefan Gander
%A Debora Bonenfant
%A Patrick Altermatt
%A Dietmar E. Martin
%A Simon Hauri
%A Suzette Moes
%A Michael N. Hall
%A Paul Jenoe
%T Identification of the rapamycin-sensitive phosphorylation sites within the Ser/Thr-rich domain of the yeast Npr1 protein kinase
%0 Journal Article
%D 2008
%J Rapid Communications in Mass Spectrometry
%P 3743-3753
%V 22
%N 23
%U http://dx.doi.org/10.1002/rcm.3790

%A Kourosh Zolghadr
%A Oliver Mortusewicz
%A Ulrich Rothbauer
%A Regina Kleinhans
%A Heike Goehler
%A Erich E. Wanker
%A M. Cristina Cardoso
%A Heinrich Leonhardt
%T A Fluorescent Two-hybrid Assay for Direct Visualization of Protein Interactions in Living Cells
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 2279-2287
%V 7
%N 11
%U http://www.mcponline.org/cgi/content/abstract/7/11/2279?etoc

%A Mamone G
%A D'Auria S
%T Is asparagine deamidation in the porcine odorant-binding protein related to the odor molecules binding?
%0 Journal Article
%D 2008
%J Protein Pept Lett
%P 895-9
%V 15
%N 9
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18991763&dopt=Abstract

%A Barboro P
%A D'Arrigo C
%A Repaci E
%A Bagnasco L
%A Orecchia P
%A Carnemolla B
%A Patrone E
%A Balbi C
%T Proteomic analysis of the nuclear matrix in the early stages of rat liver carcinogenesis: Identification of differentially expressed and MAR-binding proteins
%0 Journal Article
%D 2008
%J Exp Cell Res
%P -
%V 
%N 
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19000672&dopt=Abstract
%8 Oct 28, 2008

%A Riccardo Sgarra
%A Cristina Furlan
%A Salvina Zammitti
%A Alessandra Lo Sardo
%A Elisa Maurizio
%A Julie Di Bernardo
%A Vincenzo Giancotti
%A Guidalberto Manfioletti
%T Interaction proteomics of the HMGA chromatin architectural factors
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 4721-4732
%V 8
%N 22
%U http://dx.doi.org/10.1002/pmic.200800193

%A Chee Sian Gan
%A Tiannan Guo
%A Huoming Zhang
%A Sai Kiang Lim
%A Siu Kwan Sze
%T A Comparative Study of Electrostatic Repulsion-Hydrophilic Interaction Chromatography (ERLIC) versus SCX-IMAC-Based Methods for Phosphopeptide Isolation/Enrichment
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 4869-4877
%V 7
%N 11
%U http://dx.doi.org/10.1021/pr800473j

%A Troels Zakarias Kristiansen
%A H. C. Harsha
%A Mads Grønborg
%A Anirban Maitra
%A Akhilesh Pandey
%T Differential Membrane Proteomics Using 18O-Labeling To Identify Biomarkers for Cholangiocarcinoma
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 4670-4677
%V 7
%N 11
%U http://dx.doi.org/10.1021/pr800215n

%A Khalid Belhajjame
%A Andrew R. Jones
%A Norman W. Paton
%T A toolkit for capturing and sharing FuGE experiments
%0 Journal Article
%D 2008
%J Bioinformatics
%P 2647-2649
%V 24
%N 22
%U http://dx.doi.org/10.1093/bioinformatics/btn496

%A Zoran Sosic
%A Damian Houde
%A Andy Blum
%A Tyler Carlage
%A Yelena Lyubarskaya
%T Application of imaging capillary IEF for characterization and quantitative analysis of recombinant protein charge heterogeneity
%0 Journal Article
%D 2008
%J ELECTROPHORESIS
%P 4368-4376
%V 29
%N 21
%U http://dx.doi.org/10.1002/elps.200800157

%A Gloria Esteso
%A María Isabel Mora
%A Juan José Garrido
%A Fernando Corrales and �ngela Moreno
%T Proteomic analysis of the porcine platelet proteome and alterations induced by thrombin activation
%0 Journal Article
%D 2008
%J Journal of Proteomics
%P 547-560
%V 71
%N 5
%U http://www.sciencedirect.com/science?_ob=GatewayURL&_method=citationSearch&_urlVersion=4&_origin=SDVIALERTASCII&_version=1&_uoikey=B8JDC-4TCYCMP-2&md5=b4570ab4019976a5e968cc3e9f6264bf

%A Christopher Lausted
%A Zhiyuan Hu
%A Leroy Hood
%T Quantitative Serum Proteomics from Surface Plasmon Resonance Imaging
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 2464-2474
%V 7
%N 12
%U http://www.mcponline.org/cgi/content/abstract/7/12/2464?etoc

%A Maraziotis IA
%A Dimitrakopoulou K
%A Bezerianos A
%T An in silico method for detecting overlapping functional modules from biological networks
%0 Journal Article
%D 
%J 
%P -
%V 
%N 
%U http://dx.doi.org/10.1186/1752-0509-2-93

%A Nan Y
%A Yang S
%A Tian Y
%A Zhang W
%A Zhou B
%A Bu L
%A Huo S
%T Analysis of the expression protein profiles of lung squamous carcinoma shot-gun proteomics strategy
%0 Journal Article
%D 2008 Nov 6
%J Med Oncol
%P -
%V 
%N 
%U http://dx.doi.org/10.1007/s12032-008-9109-4
%8 2008 Nov 6

%A Zougman A
%A Ziółkowski P
%A Mann M
%A Wiśniewski JR
%T Evidence for Insertional RNA Editing in Humans
%0 Journal Article
%D 2008
%J Curr Biol
%P 1760-5
%V 18
%N 22
%U http://dx.doi.org/10.1016/j.cub.2008.09.059

%A Medicharla V. Jagannadham
%T Identification of proteins from membrane preparations by a combination of MALDI TOF-TOF and LC-coupled linear ion trap MS analysis of an Antarctic bacterium Pseudomonas syringae Lz4W, a strain with unsequenced genome
%0 Journal Article
%D 2008
%J ELECTROPHORESIS
%P 4341-4350
%V 29
%N 21
%U http://dx.doi.org/10.1002/elps.200700750

%A Hema Prasad Narra
%A Matthew H. J. Cordes
%A Howard Ochman
%T Structural features and the persistence of acquired proteins
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 4772-4781
%V 8
%N 22
%U http://dx.doi.org/10.1002/pmic.200800061

%A Rinalducci S
%A Murgiano L
%A Zolla L
%T Redox proteomics: basic principles and future perspectives for the protein oxidation in plants
%0 Journal Article
%D 2008
%J J Exp Bot
%P 3781-801
%V 59
%N 14
%U http://dx.doi.org/10.1093/jxb/ern252

%A Zuyong Xia
%A Yun Xing
%A Min-Kyung So
%A Ai Leen Koh
%A Robert Sinclair
%A Jianghong Rao
%T Multiplex Detection of Protease Activity with Quantum Dot Nanosensors Prepared by Intein-Mediated Specific Bioconjugation
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 8649-8655
%V 80
%N 22
%U http://dx.doi.org/10.1021/ac801562f

%A Trong Khoa Pham and Phillip C. Wright
%T The Proteomic Response of Saccharomyces cerevisiae in Very High Glucose Conditions with Amino Acid Supplementation
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 4766-4774
%V 7
%N 11
%U http://dx.doi.org/10.1021/pr800331s

%A Florence Roux-Dalvai
%A Anne Gonzalez de Peredo
%A Carolina Simo
%A Luc Guerrier
%A David Bouyssie
%A Alberto Zanella
%A Attilio Citterio
%A Odile Burlet-Schiltz
%A Egisto Boschetti
%A Pier Giorgio Righetti
%A Bernard Monsarrat
%T Extensive Analysis of the Cytoplasmic Proteome of Human Erythrocytes Using the Peptide Ligand Library Technology and Advanced Mass Spectrometry
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 2254-2269
%V 7
%N 11
%U http://www.mcponline.org/cgi/content/abstract/7/11/2254?etoc

%A Wei-Tao Cong
%A Sun-Young Hwang
%A Li-Tai Jin
%A Jung-Kap Choi
%T Improved conditions for fluorescent staining of proteins with 4,4?-dianilino-1,1?-binaphthyl-5,5?-disulfonic acid in SDS-PAGE
%0 Journal Article
%D 2008
%J ELECTROPHORESIS
%P 4487-4494
%V 29
%N 22
%U http://dx.doi.org/10.1002/elps.200800124

%A Nawarak J
%A Huang-Liu R
%A Kao SH
%A Liao HH
%A Sinchaikul S
%A Chen ST
%A Cheng SL
%T Proteomics analysis of A375 human malignant melanoma cells in response to arbutin treatment
%0 Journal Article
%D 2008
%J Biochim Biophys Acta
%P -
%V 
%N 
%U http://dx.doi.org/10.1016/j.bbapap.2008.09.023
%8 Oct 18, 2008

%A Croning MD
%A Marshall MC
%A McLaren P
%A Armstrong JD
%A Grant SG
%T G2Cdb: the Genes to Cognition database
%0 Journal Article
%D 2008 Nov 4
%J Nucleic Acids Res
%P -
%V 
%N 
%U http://dx.doi.org/10.1093/nar/gkn700
%8 2008 Nov 4

%A Diana R. Arnett
%A Jennifer L. Jennings
%A David L. Tabb
%A Andrew J. Link
%A P. Anthony Weil
%T A Proteomics Analysis of Yeast Mot1p Protein-Protein Associations: Insights into Mechanism
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 2090-2106
%V 7
%N 11
%U http://www.mcponline.org/cgi/content/abstract/7/11/2090?etoc

%A Melinda A. McFarland
%A Christopher E. Ellis
%A Sanford P. Markey
%A Robert L. Nussbaum
%T Proteomics Analysis Identifies Phosphorylation-dependent {alpha}-Synuclein Protein Interactions
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 2123-2137
%V 7
%N 11
%U http://www.mcponline.org/cgi/content/abstract/7/11/2123?etoc

%A Miriam Beneito-Cambra
%A José Manuel Herrero-Martínez
%A Ernesto F. Simó-Alfonso
%A Guillermo Ramis-Ramos
%T Rapid classification of enzymes in cleaning products by hydrolysis, mass spectrometry and linear discriminant analysis
%0 Journal Article
%D 2008
%J Rapid Communications in Mass Spectrometry
%P 3667-3672
%V 22
%N 22
%U http://dx.doi.org/10.1002/rcm.3778

%A Craig E. Jones
%A Julian Schwerdt
%A Tessa Arwen Bretag
%A Ute Baumann
%A Alfred L. Brown
%T GOSLING: a rule-based protein annotator using BLAST and GO
%0 Journal Article
%D 2008
%J Bioinformatics
%P 2628-2629
%V 24
%N 22
%U http://dx.doi.org/10.1093/bioinformatics/btn486

%A Vissers JP
%A Pons S
%A Hulin A
%A Tissier R
%A Berdeaux A
%A Connolly JB
%A Langridge JI
%A Geromanos SJ
%A Ghaleh B
%T The use of proteome similarity for the qualitative and quantitative profiling of reperfused myocardium
%0 Journal Article
%D 2008
%J J Chromatogr B Analyt Technol Biomed Life Sci
%P -
%V 
%N 
%U http://dx.doi.org/10.1016/j.jchromb.2008.10.024
%8 Nov 1, 2008

%A Sandoz G
%A Lesage F
%T Protein complex analysis of native brain potassium channels by proteomics
%0 Journal Article
%D 2009
%J Methods Mol Biol
%P 113-23
%V 491
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%A Sheng Wang
%A Ting Liu
%A Luyan Zhang
%A Gang Chen
%T Efficient Chymotryptic Proteolysis Enhanced by Infrared Radiation for Peptide Mapping
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 5049-5054
%V 7
%N 11
%U http://dx.doi.org/10.1021/pr800476s

%A Cheng HJ
%A Lin CF
%A Lei HY
%A Liu HS
%A Yeh TM
%A Luo YH
%A Lin YS
%T Proteomic Analysis of Endothelial Cell Autoantigens Recognized by Anti-Dengue Virus Nonstructural Protein 1 Antibodies
%0 Journal Article
%D 2008
%J Exp Biol Med (Maywood)
%P -
%V 
%N 
%U http://dx.doi.org/10.3181/0805-RM-147
%8 Nov 7, 2008

%A Marika V. Muetzelburg
%A Ralf Hoffmann
%T Separation of multiphosphorylated peptide isomers by CZE
%0 Journal Article
%D 2008
%J ELECTROPHORESIS
%P 4381-4385
%V 29
%N 21
%U http://dx.doi.org/10.1002/elps.200800089

%A Michael Heymann
%A David Paramelle
%A Gilles Subra
%A Eric Forest
%A Jean Martinez
%A Christophe Geourjon
%A Gilbert Deleage
%T MSX-3D: a tool to validate 3D protein models using mass spectrometry
%0 Journal Article
%D 2008
%J Bioinformatics
%P 2782-2783
%V 24
%N 23
%U http://dx.doi.org/10.1093/bioinformatics/btn510

%A Nagano I
%A Wu Z
%A Takahashi Y
%T Functional genes and proteins of Trichinella spp
%0 Journal Article
%D 2008 Nov 6
%J Parasitol Res
%P -
%V 
%N 
%U http://dx.doi.org/10.1007/s00436-008-1248-1
%8 2008 Nov 6

%A Sheila J. Barton
%A John C. Whittaker
%T Review of factors that influence the abundance of ions produced in a tandem mass spectrometer and statistical methods for discovering these factors
%0 Journal Article
%D 2009
%J Mass Spectrometry Reviews
%P 177-187
%V 28
%N 1
%U http://dx.doi.org/10.1002/mas.20188

%A Cao B
%A Loh KC
%T Catabolic pathways and cellular responses of Pseudomonas putida P8 on benzoate with a proteomics approach
%0 Journal Article
%D 2008
%J Biotechnol Bioeng
%P 1297-312
%V 101
%N 6
%U http://dx.doi.org/10.1002/bit.21997

%A Rondepierre F
%A Bouchon B
%A Papon J
%A Bonnet-Duquennoy M
%A Kintossou R
%A Moins N
%A Maublant J
%A Madelmont JC
%A D'Incan M
%A Degoul F
%T Proteomic studies of B16 lines: Involvement of Annexin A1 in melanoma dissemination
%0 Journal Article
%D 2009
%J Biochim Biophys Acta
%P 61-9
%V 1794
%N 1
%U http://dx.doi.org/10.1016/j.bbapap.2008.09.014

%T In this issue: Proteomics 22/2008
%0 Journal Article
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%J 
%P -
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%A Åsa K. Björklund
%A Sara Light
%A Linnea Hedin
%A Arne Elofsson
%T Quantitative assessment of the structural bias in protein-protein interaction assays
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 4657-4667
%V 8
%N 22
%U http://dx.doi.org/10.1002/pmic.200800150

%A Katie Cottingham
%T How does the mammary gland proteome change during puberty?
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 4611-4611
%V 7
%N 11
%U http://dx.doi.org/10.1021/pr800564u

%A Tiannan Guo
%A Chee Sian Gan
%A Huoming Zhang
%A Yi Zhu
%A Oi Lian Kon
%A Siu Kwan Sze
%T Hybridization of Pulsed-Q Dissociation and Collision-Activated Dissociation in Linear Ion Trap Mass Spectrometer for iTRAQ Quantitation
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 4831-4840
%V 7
%N 11
%U http://dx.doi.org/10.1021/pr800403z

%A Mazzeo MF
%A Giulio BD
%A Guerriero G
%A Ciarcia G
%A Malorni A
%A Russo GL
%A Siciliano RA
%T Fish Authentication by MALDI-TOF Mass Spectrometry
%0 Journal Article
%D 2008
%J J Agric Food Chem
%P -
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%N 
%U http://dx.doi.org/10.1021/jf8021783
%8 Nov 14, 2008

%A Estes SJ
%A Ye B
%A Qiu W
%A Cramer D
%A Hornstein MD
%A Missmer SA
%T A proteomic analysis of IVF follicular fluid in women </=32 years old
%0 Journal Article
%D 2008 Nov 1
%J Fertil Steril
%P -
%V 
%N 
%U http://dx.doi.org/10.1016/j.fertnstert.2008.08.120
%8 2008 Nov 1

%A Sofie P. Pasilis
%A Vilmos Kertesz
%A Gary J. Van Berkel
%A Michael Schulz
%A Susanne Schorcht
%T HPTLC/DESI-MS imaging of tryptic protein digests separated in two dimensions
%0 Journal Article
%D 2008
%J Journal of Mass Spectrometry
%P 1627-1635
%V 43
%N 12
%U http://dx.doi.org/10.1002/jms.1431

%A Yen HC
%A Xu Q
%A Chou DM
%A Zhao Z
%A Elledge SJ
%T Global protein stability profiling in mammalian cells
%0 Journal Article
%D 2008
%J Science
%P 918-23
%V 322
%N 5903
%U http://dx.doi.org/10.1126/science.1160489

%A Urwyler S
%A Nyfeler Y
%A Ragaz C
%A Lee H
%A Muller L
%A Aebersold R
%A Hilbi H
%T Proteome analysis of Legionella vacuoles purified by magnetic reveals secretory and endosomal GTPases
%0 Journal Article
%D 2008 Oct 29
%J Traffic
%P -
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%N 
%U http://dx.doi.org/10.1111/j.1600-0854.2008.00851.x
%8 2008 Oct 29

%A Jinsook Chang
%A Mark R. Chance
%A Courtney Nicholas
%A Naseem Ahmed
%A Sandra Guilmeau
%A Marta Flandez
%A Donghai Wang
%A Do-Sun Byun
%A Shannon Nasser
%A Joseph M. Albanese
%A Georgia A. Corner
%A Barbara G. Heerdt
%A Andrew J. Wilson
%A Leonard H. Augenlicht and John M. Mariad
%T Proteomic changes during intestinal cell maturation in vivo
%0 Journal Article
%D 2008
%J Journal of Proteomics
%P 530-546
%V 71
%N 5
%U http://www.sciencedirect.com/science?_ob=GatewayURL&_method=citationSearch&_urlVersion=4&_origin=SDVIALERTASCII&_version=1&_uoikey=B8JDC-4TF2J9C-1&md5=c51aaa393817731516260ede237c8a06

%A Anders Riis Kristensen
%A Soren Schandorff
%A Maria Hoyer-Hansen
%A Maria
%T Ordered Organelle Degradation during Starvation-induced Autophagy
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 2419-2428
%V 7
%N 12
%U http://www.mcponline.org/cgi/content/abstract/7/12/2419?etoc

%A Instrument Types
%T In-depth Analysis of Tandem Mass Spectrometry Data from Disparate
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 2386-2398
%V 7
%N 12
%U http://www.mcponline.org/cgi/content/abstract/7/12/2386?etoc

%A Arnaud Bruneel
%A Willy Morelle
%A Yoann Carre
%A Florence Habarou
%A Damien Dupont
%A Aurélie Hesbert
%A Geneviève Durand
%A Jean Claude Michalski
%A Valérie Drouin-Garraud
%A Nathalie Seta
%T Two dimensional gel electrophoresis of apolipoprotein C-III and MALDI-TOF MS are complementary techniques for the study of combined defects in N- and mucin type O-glycan biosynthesis
%0 Journal Article
%D 2008
%J PROTEOMICS - CLINICAL APPLICATIONS
%P 1670-1674
%V 2
%N 12
%U http://dx.doi.org/10.1002/prca.200800089

%A Kris Meerschaert
%A Eline Remue
%A Ariane De Ganck
%A An Staes
%A Ciska Boucherie
%A Kris Gevaert
%A Joe&#x308;l Vandekerckhove
%A Lawrence Kleiman
%A Jan Gettemans
%T The Tandem PDZ Protein Syntenin Interacts with the Aminoacyl tRNA Synthetase Complex in a Lysyl-tRNA Synthetase-Dependent Manner
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 4962-4973
%V 7
%N 11
%U http://dx.doi.org/10.1021/pr800325u

%A Daniel J Gauthier and Claude Lazure
%T Complementary methods to assist subcellular fractionation in organellar proteomics
%0 Journal Article
%D 2008
%J Expert Review of Proteomics
%P 603-617
%V 5
%N 4
%U http://dx.doi.org/10.1586/14789450.5.4.603

%A Degrasse JA
%A Chait BT
%A Field MC
%A Rout MP
%T High-yield isolation and subcellular proteomic characterization of nuclear and subnuclear structures from trypanosomes
%0 Journal Article
%D 2008
%J Methods Mol Biol
%P 77-92
%V 463
%N 
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18951162&dopt=Abstract

%A Johnson DT
%A Harris RA
%A French S
%A Aponte A
%A Balaban RS
%T Proteomic Changes associated with Diabetes in the BB-DP rat
%0 Journal Article
%D 2008 Nov 4
%J Am J Physiol Endocrinol Metab
%P -
%V 
%N 
%U http://dx.doi.org/10.1152/ajpendo.90352.2008
%8 2008 Nov 4

%A Faina Linkov
%A Robert L. Ferris
%A Zoya Yurkovetsky
%A Adele Marrangoni
%A Lyudmila Velikokhatnaya
%A William Gooding
%A Brian Nolan
%A Matthew Winans
%A Eric R. Siegel
%A Anna Lokshin
%A Brendan C. Stack Jr
%T Multiplex analysis of cytokines as biomarkers that differentiate benign and malignant thyroid diseases
%0 Journal Article
%D 2008
%J PROTEOMICS - CLINICAL APPLICATIONS
%P 1575-1585
%V 2
%N 12
%U http://dx.doi.org/10.1002/prca.200780095

%A Kazuyuki Nakamura and Hisashi Hirano
%T Japan HUPO for Promotion of Global Collaborations in Human Proteomics
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 2486-2487
%V 7
%N 12
%U http://www.mcponline.org/cgi/content/full/7/12/2486?etoc

%A Daniel Bilusich
%A John. H. Bowie
%T Fragmentations of (M-H)- anions of underivatised peptides. Part 2: Characteristic cleavages of Ser and Cys and of disulfides and other post-translational modifications, together with some unusual internal proces
%0 Journal Article
%D 2009
%J Mass Spectrometry Reviews
%P 20-34
%V 28
%N 1
%U http://dx.doi.org/10.1002/mas.20206

%A Yi-Wei Yang
%A Shao-Min Bian
%A Yuan Yao
%A Jin-Yuan Liu
%T Comparative Proteomic Analysis Provides New Insights into the Fiber Elongating Process in Cotton
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 4623-4637
%V 7
%N 11
%U http://dx.doi.org/10.1021/pr800550q

%A Visith Thongboonkerd
%A Theptida Semangoen
%A Supachok Sinchaikul
%A Shui-Tein Chen
%T Proteomic Analysis of Calcium Oxalate Monohydrate Crystal-Induced Cytotoxicity in Distal Renal Tubular Cells
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 4689-4700
%V 7
%N 11
%U http://dx.doi.org/10.1021/pr8002408

%A Gu J
%A Hilser VJ
%T Predicting the energetics of conformational fluctuations in proteins from sequence: a strategy for profiling the proteome
%0 Journal Article
%D 2008
%J Structure
%P 1627-37
%V 16
%N 11
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19000815&dopt=Abstract

%A Chang K
%A Wang T
%A Luo G
%T Proteomics study of the hepatitis C virus replication complex
%0 Journal Article
%D 2009
%J Methods Mol Biol
%P 185-93
%V 510
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%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19009262&dopt=Abstract

%A Richard A. Scheltema
%A Anas Kamleh
%A David Wildridge
%A Charles Ebikeme
%A David G. Watson
%A Michael P. Barrett
%A Ritsert C. Jansen
%A Rainer Breitling
%T Increasing the mass accuracy of high-resolution LC-MS data using background ions - a case study on the LTQ-Orbitrap
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 4647-4656
%V 8
%N 22
%U http://dx.doi.org/10.1002/pmic.200800314

%A Ngoka LC
%T Sample prep for proteomics of breast cancer: proteomics and gene ontology reveal dramatic differences in protein solubilization preferences of radioimmunoprecipitation assay and urea lysis buffers
%0 Journal Article
%D 
%J 
%P -
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%A Ye-Hong Kuang
%A Xiang Chen
%A Juan Su
%A Li-Sha Wu
%A Ji Li
%A Jing Chang
%A Ying Qiu
%A Zhe-Sheng Chen
%A Takuro Kanekura
%T Proteome Analysis of Multidrug Resistance of Human Oral Squamous Carcinoma Cells Using CD147 Silencing
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 4784-4791
%V 7
%N 11
%U http://dx.doi.org/10.1021/pr800355b

%A Chen Y
%A Gu B
%A Wu S
%A Sun W
%A Ma S
%A Liu Y
%A Gao Y
%T Using enrichment index for quality control of secretory protein sample and identification of secretory proteins
%0 Journal Article
%D 2008
%J J Mass Spectrom
%P -
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%N 
%U http://dx.doi.org/10.1002/jms.1517
%8 Nov 10, 2008

%A Anne-Aurelie Raymond
%A Anne Gonzalez de Peredo
%A Alexandre Stella
%A Akemi Ishida-Yamamoto
%A David Bouyssie
%A Guy Serre
%A Bernard Monsarrat
%A Michel Simon
%T Lamellar Bodies of Human Epidermis: Proteomics Characterization by High Throughput Mass Spectrometry and Possible Involvement of CLIP-170 in their Trafficking/Secretion
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 2151-2175
%V 7
%N 11
%U http://www.mcponline.org/cgi/content/abstract/7/11/2151?etoc

%A Songhee Jeon
%A Youn Jung Kim
%A Seung-Tae Kim
%A Woongjoon Moon
%A Younbyoung Chae
%A Minjeong Kang
%A Mi-Young Chung
%A Hyangsook Lee
%A Mi-Sook Hong
%A Joo-Ho Chung
%A Tong H. Joh
%A Hyejung Lee
%A Hi-Joon Park
%T Proteomic analysis of the neuroprotective mechanisms of acupuncture treatment in a Parkinson's disease mouse model
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 4822-4832
%V 8
%N 22
%U http://dx.doi.org/10.1002/pmic.200700955

%A Simone Lemeer
%A Chris Jopling
%A Joost Gouw
%A Shabaz Mohammed
%A Albert J. R. Heck
%A Monique Slijper
%A Jeroen den Hertog
%T Comparative Phosphoproteomics of Zebrafish Fyn/Yes Morpholino Knockdown Embryos
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 2176-2187
%V 7
%N 11
%U http://www.mcponline.org/cgi/content/abstract/7/11/2176?etoc

%A Yu Mi Baek
%A Hye Jin Hwang
%A Sang Woo Kim
%A Hee Sun Hwang
%A Sung Hak Lee
%A Jung Ae Kim
%A Jong Won Yun
%T A comparative proteomic analysis for capsaicin-induced apoptosis between human hepatocarcinoma (HepG2) and human neuroblastoma (SK-N-SH) cells
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 4748-4767
%V 8
%N 22
%U http://dx.doi.org/10.1002/pmic.200800094

%A Beyea JA
%A Olson DM
%A Harvey S
%T Growth hormone-dependent changes in the rat lung proteome during lung throughout the period of alveolarization (day 4-14 postnatally)
%0 Journal Article
%D 2008 Nov 5
%J Mol Cell Biochem
%P -
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%N 
%U http://dx.doi.org/10.1007/s11010-008-9933-z
%8 2008 Nov 5

%A Prasad TS
%A Goel R
%A Kandasamy K
%A Keerthikumar S
%A Kumar S
%A Mathivanan S
%A Telikicherla D
%A Raju R
%A Shafreen B
%A Venugopal A
%A Balakrishnan L
%A Marimuthu A
%A Banerjee S
%A Somanathan DS
%A Sebastian A
%A Rani S
%A Ray S
%A Kishore CJ
%A Kanth S
%A Ahmed M
%A Kashyap MK
%A Mohmood R
%T Human Protein Reference Database--2009 update
%0 Journal Article
%D 2008 Nov 6
%J Nucleic Acids Res
%P -
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%8 2008 Nov 6

%A Hajime Mizuno
%A Naohiro Tsuyama
%A Takanori Harada
%A Tsutomu Masujima
%T Live single-cell video-mass spectrometry for cellular and subcellular molecular detection and cell classification
%0 Journal Article
%D 2008
%J Journal of Mass Spectrometry
%P 1692-1700
%V 43
%N 12
%U http://dx.doi.org/10.1002/jms.1460

%A Asano A
%A Selvaraj V
%A Buttke DE
%A Nelson JL
%A Green KM
%A Evans JE
%A Travis AJ
%T Biochemical characterization of membrane fractions in murine sperm: Identification of three distinct sub-types of membrane rafts
%0 Journal Article
%D 2008
%J J Cell Physiol
%P -
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%8 Nov 12, 2008

%A Zhu X
%A Lv J
%A Yu L
%A Zhu X
%A Wu J
%A Zou S
%A Jiang S
%T Proteomic identification of differentially-expressed proteins in squamous cervical cancer
%0 Journal Article
%D 2008
%J Gynecol Oncol
%P -
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%N 
%U http://dx.doi.org/10.1016/j.ygyno.2008.09.045
%8 Nov 11, 2008

%A Manuela Argentini
%A Jean-Marc Strub
%A Christine Carapito
%A Sarah Sanglier
%A Alain Van-Dorsselaer
%T An Optimized MALDI Mass Spectrometry Method for Improved Detection of Lysine/Arginine/Histidine Free Peptides
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 5062-5069
%V 7
%N 11
%U http://dx.doi.org/10.1021/pr800276n

%A Shun-ichiro Ogura
%A Kumi Kaneko
%A Shoji Miyajima
%A Keiichi Ohshima
%A Ken Yamaguchi
%A Tohru Mochizuki
%T Proneurotensin/neuromedin N secreted from small cell lung carcinoma cell lines as a potential tumor marker
%0 Journal Article
%D 2008
%J PROTEOMICS - CLINICAL APPLICATIONS
%P 1620-1627
%V 2
%N 12
%U http://dx.doi.org/10.1002/prca.200800039

%A Huu Phuc Nguyen
%A Silke Metzger
%A Carsten Holzmann
%A Dirk Koczan
%A Hans-Jürgen Thiesen
%A Stephan von Hörsten
%A Olaf Riess
%A Michael Bonin
%T Age-dependent gene expression profile and protein expression in a transgenic rat model of Huntington's disease
%0 Journal Article
%D 2008
%J PROTEOMICS - CLINICAL APPLICATIONS
%P 1638-1650
%V 2
%N 12
%U http://dx.doi.org/10.1002/prca.200800018

%A De Wit M
%A Keil D
%A Remmerie N
%A van der Ven K
%A van den Brandhof EJ
%A Knapen D
%A Witters E
%A De Coen W
%T Molecular targets of TBBPA in zebrafish analysed through integration of and proteomic approaches
%0 Journal Article
%D 2008
%J Chemosphere
%P 96-105
%V 74
%N 1
%U http://dx.doi.org/10.1016/j.chemosphere.2008.09.030

%A Frasson M
%A Vitadello M
%A Brunati AM
%A La Rocca N
%A Tibaldi E
%A Pinna LA
%A Gorza L
%A Donella-Deana A
%T Grp94 is Tyr-phosphorylated by Fyn in the lumen of the endoplasmic reticulum and translocates to Golgi in differentiating myoblasts
%0 Journal Article
%D 2008
%J Biochim Biophys Acta
%P -
%V 
%N 
%U http://dx.doi.org/10.1016/j.bbamcr.2008.10.001
%8 Oct 22, 2008

%A Joost Schimmel
%A Katja M. Larsen
%A Ivan Matic
%A Martijn van Hagen
%A Jurgen Cox
%A Matthias Mann
%A Jens S. Andersen
%A Alfred C. O. Vertegaal
%T The Ubiquitin-Proteasome System Is a Key Component of the SUMO-2/3 Cycle
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 2107-2122
%V 7
%N 11
%U http://www.mcponline.org/cgi/content/abstract/7/11/2107?etoc

%A Hakan Viklund
%A Andreas Bernsel
%A Marcin Skwark
%A Arne Elofsson
%T SPOCTOPUS: a combined predictor of signal peptides and membrane protein topology
%0 Journal Article
%D 2008
%J Bioinformatics
%P 2928-2929
%V 24
%N 24
%U http://dx.doi.org/10.1093/bioinformatics/btn550

%A Christoph Borchers
%T The 8th International Conference of the Canadian Proteomics Initiative
%0 Journal Article
%D 2008
%J Expert Review of Proteomics
%P 549-550
%V 5
%N 4
%U http://dx.doi.org/10.1586/14789450.5.4.549

%A Wei-Cheng Horng
%A Yuan-Hun Yen
%A Yen-Chung Chang
%T A novel solid phase- and chemical crosslinking-based technology for determining protein localization in biological supramolecules
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 4642-4646
%V 8
%N 22
%U http://dx.doi.org/10.1002/pmic.200800216

%A Elmer A. Ferna;ndez
%A Maria R. Girotti
%A Juan A. Lopez del Olmo
%A Andrea S. Llera
%A Osvaldo L. Podhajcer
%A Rodolfo J. C. Cantet
%A Monica Balzarini
%T Improving 2D-DIGE protein expression analysis by two-stage linear mixed models: assessing experimental effects in a melanoma cell study
%0 Journal Article
%D 2008
%J Bioinformatics
%P 2706-2712
%V 24
%N 23
%U http://dx.doi.org/10.1093/bioinformatics/btn508

%A Vincent C. Chen
%A Chi-Chi Chou
%A Hsin-Yu Hsieh
%A Hélène Perreault
%A Kay-Hooi Khoo
%T Targeted identification of phosphorylated peptides by off-line HPLC-MALDI-MS/MS using LC retention time prediction
%0 Journal Article
%D 2008
%J Journal of Mass Spectrometry
%P 1649-1658
%V 43
%N 12
%U http://dx.doi.org/10.1002/jms.1450

%A Lei Fang
%A Xiaorong Wang
%A Kosj Yamoah
%A Phang-lang Chen
%A Zhen-Qiang Pan
%A Lan Huang
%T Characterization of the Human COP9 Signalosome Complex Using Affinity Purification and Mass Spectrometry
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 4914-4925
%V 7
%N 11
%U http://dx.doi.org/10.1021/pr800574c

%A Danmei Xu
%A Naoko Suenaga
%A Mariola J. Edelmann
%A Rafael Fridman
%A Ruth J. Muschel
%A Benedikt M. Kessler
%T Novel MMP-9 Substrates in Cancer Cells Revealed by a Label-free Quantitative Proteomics Approach
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 2215-2228
%V 7
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%U http://www.mcponline.org/cgi/content/abstract/7/11/2215?etoc

%A Rimco B. J. Geels
%A Stephane Calmat
%A Albert J. R. Heck
%A Saskia M. van der Vies
%A Ron M. A. Heeren
%T Thermal activation of the co-chaperonins GroES and gp31 probed by mass spectrometry
%0 Journal Article
%D 2008
%J Rapid Communications in Mass Spectrometry
%P 3633-3641
%V 22
%N 22
%U http://dx.doi.org/10.1002/rcm.3782

%A Jackman JE
%A Grayhack EJ
%A Phizicky EM
%T The use of Saccharomyces cerevisiae proteomic libraries to identify proteins
%0 Journal Article
%D 2008
%J Methods Mol Biol
%P 383-93
%V 488
%N 
%U http://dx.doi.org/10.1007/978-1-60327-475-3_25

%A Underhill MF
%A Smales CM
%T The cold-shock response in mammalian cells: investigating the HeLa cell cold-shock proteome
%0 Journal Article
%D 2007
%J Cytotechnology
%P 47-53
%V 53
%N 1-3
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19003189&dopt=Abstract

%A Jenny A. Cappuccio
%A Craig D. Blanchette
%A Todd A. Sulchek
%A Erin S. Arroyo
%A Joel M. Kralj
%A Angela K. Hinz
%A Edward A. Kuhn
%A Brett A. Chromy
%A Brent W. Segelke
%A Kenneth J. Rothschild
%A Julia E. Fletcher
%A Federico Katzen
%A Todd C. Peterson
%A Wieslaw A. Kudlicki
%A G
%T Cell-free Co-expression of Functional Membrane Proteins and Apolipoprotein, Forming Soluble Nanolipoprotein Particles
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 2246-2253
%V 7
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%U http://www.mcponline.org/cgi/content/abstract/7/11/2246?etoc

%A H. C. Harsha
%A Antonio Jimeno
%A Henrik Molina
%A Anca B. Mihalas
%A Michael G. Goggins
%A Ralph H. Hruban
%A Richard D. Schulick
%A Ullas Kamath
%A Anirban Maitra
%A Manuel Hidalgo
%A Akhilesh Pandey
%T Activated Epidermal Growth Factor Receptor as a Novel Target in Pancreatic Cancer Therapy
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 4651-4658
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%U http://dx.doi.org/10.1021/pr800139r

%A Randolt K
%A Gimple O
%A Geissendorfer J
%A Reinders J
%A Prusko C
%A Mueller MJ
%A Albert S
%A Tautz J
%A Beier H
%T Immune-related proteins induced in the hemolymph after aseptic and differ in honey bee worker larvae and adults
%0 Journal Article
%D 2008
%J Arch Insect Biochem Physiol
%P 155-67
%V 69
%N 4
%U http://dx.doi.org/10.1002/arch.20269

%T Contents: Proteomics 22/2008
%0 Journal Article
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%A Laura Rowe
%A Kelly Combs
%A Sapna Deo
%A C. Ensor
%A Sylvia Daunert
%A Xiaoge Qu
%T Genetically Modified Semisynthetic Bioluminescent Photoprotein Variants: Simultaneous Dual-Analyte Assay in a Single Well Employing Time Resolution of Decay Kinetics
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 8470-8476
%V 80
%N 22
%U http://dx.doi.org/10.1021/ac801209x

%A Shotgun Proteomics
%T Factors That Contribute to the Misidentification of Tyrosine Nitration by
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 2442-2451
%V 7
%N 12
%U http://www.mcponline.org/cgi/content/abstract/7/12/2442?etoc

%A Rose K
%A Schröer U
%A Volk GF
%A Schlatt S
%A König S
%A Feigenspan A
%A Thanos S
%T Axonal regeneration in the organotypically cultured monkey retina: Biological aspects, dependence on substrates and age-related proteomic profiling
%0 Journal Article
%D 2008
%J Restor Neurol Neurosci
%P 249-66
%V 26
%N 4-5
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18997304&dopt=Abstract

%A Daniel B. Martin
%A Ted Holzman
%A Damon May
%A Amelia Peterson
%A Ashley Eastham
%A Jimmy Eng
%A Martin McIntosh
%T MRMer, an Interactive Open Source and Cross-platform System for Data Extraction and Visualization of Multiple Reaction Monitoring Experiments
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 2270-2278
%V 7
%N 11
%U http://www.mcponline.org/cgi/content/abstract/7/11/2270?etoc

%A Meleady P
%T Proteomic profiling of recombinant cells from large-scale mammalian cell culture processes
%0 Journal Article
%D 2007
%J Cytotechnology
%P 23-31
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%N 1-3
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19003187&dopt=Abstract

%A Sinha A
%A Srivastava N
%A Singh S
%A Singh AK
%A Bhushan S
%A Shukla R
%A Singh MP
%T Identification of differentially displayed proteins in cerebrospinal Parkinson's disease patients: A proteomic approach
%0 Journal Article
%D 2008 Oct 2
%J Clin Chim Acta
%P -
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%8 2008 Oct 2

%A J. M. Chick
%A P. A. Haynes
%A B. Bjellqvist
%A M. S. Baker
%T A Combination of Immobilised pH Gradients Improves Membrane Proteomics
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 4974-4981
%V 7
%N 11
%U http://dx.doi.org/10.1021/pr800349f

%T Meetings Diary
%0 Journal Article
%D 
%J 
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%A Application on Angiotensin II-Stimulated Smooth Muscle Cells Secretome
%T Label-free Quantitative Analysis of One-dimensional PAGE LC/MS/MS Proteome:
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 2399-2409
%V 7
%N 12
%U http://www.mcponline.org/cgi/content/abstract/7/12/2399?etoc

%T In this issue: Proteomics - Clinical Applications 12/2008
%0 Journal Article
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%A S. Ding
%A A. E. Bond
%A F. Lemière
%A R. Tuytten
%A E. L. Esmans
%A A. G. Brenton
%A E. Dudley
%A R. P. Newton
%T Online immobilized metal affinity chromatography/mass spectrometric analysis of changes elicited by cCMP in the murine brain phosphoproteome
%0 Journal Article
%D 2008
%J Rapid Communications in Mass Spectrometry
%P 4129-4138
%V 22
%N 24
%U http://dx.doi.org/10.1002/rcm.3834

%T Contents - Electrophoresis 22'2008
%0 Journal Article
%D 2008
%J ELECTROPHORESIS
%P ii-iv
%V 29
%N 22
%U http://dx.doi.org/10.1002/elps.200890103

%A J. M. Moreno-Rojas
%A F. Tulli
%A M. Messina
%A E. Tibaldi
%A C. Guillou
%T Stable isotope ratio analysis as a tool to discriminate between rainbow trout (O. mykiss) fed diets based on plant or fish-meal proteins
%0 Journal Article
%D 2008
%J Rapid Communications in Mass Spectrometry
%P 3706-3710
%V 22
%N 23
%U http://dx.doi.org/10.1002/rcm.3775

%T News in brief
%0 Journal Article
%D 2008
%J Expert Review of Proteomics
%P 545-547
%V 5
%N 4
%U http://dx.doi.org/10.1586/14789450.5.4.545

%A Francesco Sirocco and Silvio C. E. Tosatto
%T TESE: generating specific protein structure test set ensembles
%0 Journal Article
%D 2008
%J Bioinformatics
%P 2632-2633
%V 24
%N 22
%U http://dx.doi.org/10.1093/bioinformatics/btn488

%A Minerick AR
%A Ugaz VM
%A Murthy SK
%A Posner JD
%T Review of electrophoresis and BioMEMS in 2007: American Electrophoresis 24th Annual Meeting
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%D 2008
%J J Capill Electrophor Microchip Technol
%P 101-9
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%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18982910&dopt=Abstract

%A Leigh G. Griffiths
%A Leila Choe
%A Kelvin H. Lee
%A Kenneth F. Reardon
%A E. Christopher Orton
%T Protein extraction and 2-DE of water- and lipid-soluble proteins from bovine pericardium, a low-cellularity tissue
%0 Journal Article
%D 2008
%J ELECTROPHORESIS
%P 4508-4515
%V 29
%N 22
%U http://dx.doi.org/10.1002/elps.200800108

%A Cruz JR
%A Moreno Diaz de la Espina S
%T Subnuclear compartmentalization and function of actin and nuclear Myosin plants
%0 Journal Article
%D 2008 Nov 4
%J Chromosoma
%P -
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%8 2008 Nov 4

%A Leonard J Foster
%T Lessons learned from lipid raft proteomics
%0 Journal Article
%D 2008
%J Expert Review of Proteomics
%P 541-543
%V 5
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%U http://dx.doi.org/10.1586/14789450.5.4.541

%A McKeown P
%A Pendle AF
%A Shaw PJ
%T Preparation of Arabidopsis nuclei and nucleoli
%0 Journal Article
%D 2008
%J Methods Mol Biol
%P 67-75
%V 463
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%A Thongboonkerd V
%A Chiangjong W
%A Mares J
%A Moravec J
%A Tuma Z
%A Karvunidis T
%A Sinchaikul S
%A Chen ST
%A Opatrný K
%A Matejovic M
%T Altered plasma proteome during an early phase of peritonitis-induced sepsis
%0 Journal Article
%D 2008
%J Clin Sci (Lond)
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%8 Nov 13, 2008

%A Gabriele Cavallaro
%A Leonardo Decaria
%A Antonio Rosato
%T Genome-Based Analysis of Heme Biosynthesis and Uptake in Prokaryotic Systems
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 4946-4954
%V 7
%N 11
%U http://dx.doi.org/10.1021/pr8004309

%A Thanh Hai Dang
%A Koenraad Van Leemput
%A Alain Verschoren
%A Kris Laukens
%T Prediction of kinase-specific phosphorylation sites using conditional random fields
%0 Journal Article
%D 2008
%J Bioinformatics
%P 2857-2864
%V 24
%N 24
%U http://dx.doi.org/10.1093/bioinformatics/btn546

%A Bing Mo
%A Eduardo Callegari
%A Martin Telefont
%A Kenneth J. Renner
%T Estrogen Regulation of Proteins in the Rat Ventromedial Nucleus of the Hypothalamus
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 5040-5048
%V 7
%N 11
%U http://dx.doi.org/10.1021/pr8005974

%A Antonio Conti
%A Sandro Iannaccone
%A Barbara Sferrazza
%A Lucia De Monte
%A Stefano Cappa
%A Diego Franciotta
%A Stefano Olivieri
%A Massimo Alessio
%T Differential expression of ceruloplasmin isoforms in the cerebrospinal fluid of amyotrophic lateral sclerosis patients
%0 Journal Article
%D 2008
%J PROTEOMICS - CLINICAL APPLICATIONS
%P 1628-1637
%V 2
%N 12
%U http://dx.doi.org/10.1002/prca.200780081

%A John T. Prince and Edward M. Marcotte
%T mspire: mass spectrometry proteomics in Ruby
%0 Journal Article
%D 2008
%J Bioinformatics
%P 2796-2797
%V 24
%N 23
%U http://dx.doi.org/10.1093/bioinformatics/btn513

%A Ivo M.B. Francischetti
%A Zhaojing Meng
%A Ben J. Mans
%A Nanda Gudderra
%A Mark Hall
%A Timothy D. Veenstra
%A Van M. Pham
%A Michail Kotsyfakis and José M.C. Ribeiro
%T An insight into the salivary transcriptome and proteome of the soft tick and vector of epizootic bovine abortion, Ornithodoros coriaceus☆
%0 Journal Article
%D 2008
%J Journal of Proteomics
%P 493-512
%V 71
%N 5
%U http://www.sciencedirect.com/science?_ob=GatewayURL&_method=citationSearch&_urlVersion=4&_origin=SDVIALERTASCII&_version=1&_uoikey=B8JDC-4T4HPBX-1&md5=55c0523cca2fa7318685eddb5c718cca

%A Jenny Ellis
%A Rudolf Grimm
%A Joseph F. Clark
%A Gail Pyne-Gaithman
%A Steve Wilbur
%A Joseph A. Caruso
%T Studying Protein Phosphorylation in Low MW CSF Fractions with capLC&#x2212;ICPMS and nanoLC&#x2212;CHIP-ITMS for Identification of Phosphoproteins
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 4736-4742
%V 7
%N 11
%U http://dx.doi.org/10.1021/pr800294r

%A Rene Stempfer
%A Markus Kubicek
%A Irene M. Lang
%A Noehammer Christa
%A Christopher Gerner
%T Quantitative assessment of human serum high-abundance protein depletion
%0 Journal Article
%D 2008
%J ELECTROPHORESIS
%P 4316-4323
%V 29
%N 21
%U http://dx.doi.org/10.1002/elps.200800211

%A de Chassey B
%A Navratil V
%A Tafforeau L
%A Hiet MS
%A Aublin-Gex A
%A Agaugue S
%A Meiffren G
%A Pradezynski F
%A Faria BF
%A Chantier T
%A Le Breton M
%A Pellet J
%A Davoust N
%A Mangeot PE
%A Chaboud A
%A Penin F
%A Jacob Y
%A Vidalain PO
%A Vidal M
%A Andre P
%A Rabourdin-Combe C
%A Lotteau 
%T Hepatitis C virus infection protein network
%0 Journal Article
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%A Peter G. Hains
%A Roger J. W. Truscott
%T Proteome analysis of human foetal, aged and advanced nuclear cataract lenses
%0 Journal Article
%D 2008
%J PROTEOMICS - CLINICAL APPLICATIONS
%P 1611-1619
%V 2
%N 12
%U http://dx.doi.org/10.1002/prca.200800085

%A He F
%A Zhang Y
%A Chen H
%A Zhang Z
%A Peng YL
%T The Prediction of Protein-Protein Interaction Networks in Rice
%0 Journal Article
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%A Acin P
%A Carrascal M
%A Abian J
%A Guerrero A
%A Quero C
%T Expression of differential antennal proteins in males and females of an crop pest, Sesamia nonagrioides
%0 Journal Article
%D 2008 Oct 14
%J Insect Biochem Mol Biol
%P -
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%8 2008 Oct 14

%A Zhao Z
%A Wei X
%A Aliwarga Y
%A Carnt NA
%A Garrett Q
%A Willcox MD
%T Proteomic analysis of protein deposits on worn daily wear silicone contact lenses
%0 Journal Article
%D 2008
%J Mol Vis
%P 2016-24
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%A Miroslava Stastna
%A Karel Slais
%T Single-input divergent flow IEF for preparative analysis of proteins
%0 Journal Article
%D 2008
%J ELECTROPHORESIS
%P 4503-4507
%V 29
%N 22
%U http://dx.doi.org/10.1002/elps.200800293

%A Xuejiang Guo
%A Ping Zhang
%A Ran Huo
%A Zuomin Zhou
%A Jiahao Sha
%T Analysis of the human testis proteome by mass spectrometry and bioinformatics
%0 Journal Article
%D 2008
%J PROTEOMICS - CLINICAL APPLICATIONS
%P 1651-1657
%V 2
%N 12
%U http://dx.doi.org/10.1002/prca.200780120

%A Ahmad Y
%A Boisvert FM
%A Gregor P
%A Cobley A
%A Lamond AI
%T NOPdb: Nucleolar Proteome Database--2008 update
%0 Journal Article
%D 2008 Nov 4
%J Nucleic Acids Res
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%8 2008 Nov 4

%A Bowick GC
%A Spratt HM
%A Hogg AE
%A Endsley JJ
%A Wiktorowicz JE
%A Kurosky A
%A Luxon BA
%A Gorenstein DG
%A Herzog NK
%T Analysis of the Differential Host-Cell Nuclear Proteome Induced by Attenuated and Virulent Hemorrhagic Arenavirus Infection
%0 Journal Article
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%J J Virol
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%8 Nov 12, 2008

%A Weiwei Wang
%A Bo Meng
%A Xiaomeng Ge
%A Shuhui Song
%A Yue Yang
%A Xiaomin Yu
%A Liguo Wang
%A Songnian Hu
%A Siqi Liu
%A Jun Yu
%T Proteomic profiling of rice embryos from a hybrid rice cultivar and its parental lines
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 4808-4821
%V 8
%N 22
%U http://dx.doi.org/10.1002/pmic.200701164

%T Cover Picture: Proteomics - Clinical Applications 12/2008
%0 Journal Article
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%A Marcel P. Stoop
%A Robert-Jan A. N. Lamers
%A Peter C. Burgers
%A Peter A. E. Sillevis Smitt
%A Rogier Q. Hintzen
%A Theo M. Luider
%T The Rate of False Positive Sequence Matches of Peptides Profiled by MALDI MS and Identified by MS/MS
%0 Journal Article
%D 2008
%J JOURNAL OF PROTEOME RESEARCH
%P 4841-4847
%V 7
%N 11
%U http://dx.doi.org/10.1021/pr800489a

%A Chih-Ching Wu
%A Yu-Shan Huang
%A Li-Yu Lee
%A Ying Liang
%A Rei-Ping Tang
%A Yu-Sun Chang
%A Ling-Ling Hsieh
%A Jau-Song Yu
%T Overexpression and elevated plasma level of tumor-associated antigen 90K/Mac-2 binding protein in colorectal carcinoma
%0 Journal Article
%D 2008
%J PROTEOMICS - CLINICAL APPLICATIONS
%P 1586-1595
%V 2
%N 12
%U http://dx.doi.org/10.1002/prca.200800080

%A Shifei Xia
%A Lan Zhang
%A Bin Qiu
%A Minghua Lu
%A Yuwu Chi
%A Guonan Chen
%T On-line preconcentration and quantitative analysis of peptide hormone of brain and intestine using on-column transient isotachophoresis coupled with capillary electrophoresis/electrospray ionization mass spectrometry
%0 Journal Article
%D 2008
%J Rapid Communications in Mass Spectrometry
%P 3719-3726
%V 22
%N 23
%U http://dx.doi.org/10.1002/rcm.3787

%A Valentina E. V. Ferrero
%A Laura Andolfi
%A Giovanna Di Nardo
%A Sheila J. Sadeghi
%A Andrea Fantuzzi
%A Salvatore Cannistraro
%A Gianfranco Gilardi
%T Protein and Electrode Engineering for the Covalent Immobilization of P450 BMP on Gold
%0 Journal Article
%D 2008
%J ANALYTICAL CHEMISTRY
%P 8438-8446
%V 80
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%U http://dx.doi.org/10.1021/ac8011413

%A Aymeric Morla
%A Florence Poirier
%A Sylvie Pons
%A Corinne Beaulieu
%A Jean-Philippe Charrier
%A Yasemin Ataman-Önal
%A Olivier Gléhen
%A Michel Jolivet
%A Geneviève Choquet-Kastylevsky
%T Analysis of high molecular mass proteins larger than 150 kDa using cyanogen bromide cleavage and conventional 2-DE
%0 Journal Article
%D 2008
%J ELECTROPHORESIS
%P 4158-4168
%V 29
%N 20
%U http://dx.doi.org/10.1002/elps.200800007

%A Caspase-1 Inflammasomes
%T Targeted Peptidecentric Proteomics Reveals Caspase-7 as a Substrate of the
%0 Journal Article
%D 2008
%J Mol Cell Proteomics
%P 2350-2363
%V 7
%N 12
%U http://www.mcponline.org/cgi/content/abstract/7/12/2350?etoc

%A Alain Dupuis
%A Jacques-Antoine Hennekinne
%A Jérôme Garin
%A Virginie Brun
%T Protein Standard Absolute Quantification (PSAQ) for improved investigation of staphylococcal food poisoning outbreaks
%0 Journal Article
%D 2008
%J PROTEOMICS
%P 4633-4636
%V 8
%N 22
%U http://dx.doi.org/10.1002/pmic.200800326