TY - JOUR A1 - Melanie Osl A1 - Stephan Dreiseitl A1 - Bernhard Pfeifer A1 - Klaus Weinberger A1 - Helmut Klocker A1 - Georg Bartsch A1 - Georg Schafer A1 - Bernhard Tilg A1 - Armin Graber A1 - Christian Baumgartner T1 - A new rule-based algorithm for identifying metabolic markers in prostate cancer using tandem mass spectrometry JO - Bioinformatics Y1 - 2008 SP - 2908 EP - 2914 VL - 24 IS - 24 UR - http://dx.doi.org/10.1093/bioinformatics/btn506 ER - TY - JOUR A1 - Shi-Jin Yin A1 - Ling Jiang A1 - Hong Yi A1 - Song Han A1 - Dai-Wen Yang A1 - Mai-Li Liu A1 - Hui Liu A1 - Zhi-Jian Cao A1 - Ying-Liang Wu A1 - Wen-Xin Li T1 - Different Residues in Channel Turret Determining the Selectivity of ADWX-1 Inhibitor Peptide between Kv1.1 and Kv1.3 Channels JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2008 SP - 4890 EP - 4897 VL - 7 IS - 11 UR - http://dx.doi.org/10.1021/pr800494a ER - TY - JOUR A1 - Anthony Collet A1 - Pascal Cosette A1 - Christophe Beloin A1 - Jean-Marc Ghigo A1 - Christophe Rihouey A1 - Patrice Lerouge A1 - Guy-Alain Junter A1 - Thierry Jouenne T1 - Impact of rpoS Deletion on the Proteome of Escherichia coli Grown Planktonically and as Biofilm JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2008 SP - 4659 EP - 4669 VL - 7 IS - 11 UR - http://dx.doi.org/10.1021/pr8001723 ER - TY - JOUR A1 - Lu Y A1 - Jiao R A1 - Chen X A1 - Zhong J A1 - Ji J A1 - Shen P T1 - Methylene blue-mediated photodynamic therapy induces apoptosis in HeLa cell JO - J Cell Biochem Y1 - 2008 SP - 1451 EP - 60 VL - 105 IS - 6 UR - http://dx.doi.org/10.1002/jcb.21965 ER - TY - JOUR A1 - Andrea Jurisicova A1 - Igor Jurisica A1 - Thomas Kislinger T1 - Advances in ovarian cancer proteomics: the quest for biomarkers and improved therapeutic interventions JO - Expert Review of Proteomics Y1 - 2008 SP - 551 EP - 560 VL - 5 IS - 4 UR - http://dx.doi.org/10.1586/14789450.5.4.551 ER - TY - JOUR A1 - Kelli G. Kline A1 - Barbara Frewen A1 - Michael R. Bristow A1 - Michael J. MacCoss A1 - Christine C. Wu T1 - High Quality Catalog of Proteotypic Peptides from Human Heart JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2008 SP - 5055 EP - 5061 VL - 7 IS - 11 UR - http://dx.doi.org/10.1021/pr800239e ER - TY - JOUR A1 - Affinity Purification T1 - In Vivo Interactome of Helicobacter pylori Urease Revealed by Tandem JO - Mol Cell Proteomics Y1 - 2008 SP - 2429 EP - 2441 VL - 7 IS - 12 UR - http://www.mcponline.org/cgi/content/abstract/7/12/2429?etoc ER - TY - JOUR A1 - Xunbao Duan A1 - Steven G. Kelsen A1 - Salim Merali T1 - Proteomic Analysis of Oxidative Stress-Responsive Proteins in Human Pneumocytes: Insight into the Regulation of DJ-1 Expression JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2008 SP - 4955 EP - 4961 VL - 7 IS - 11 UR - http://dx.doi.org/10.1021/pr800295j ER - TY - JOUR A1 - Wastling JM A1 - Xia D A1 - Sohal A A1 - Chaussepied M A1 - Pain A A1 - Langsley G T1 - Proteomes and transcriptomes of Apicomplexa - Where's the message? JO - Int J Parasitol Y1 - 2008/11/1 SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.ijpara.2008.10.003 ER - TY - JOUR A1 - Govorukhina NI A1 - de Vries M A1 - Reijmers TH A1 - Horvatovich P A1 - van der Zee AG A1 - Bischoff R T1 - Influence of clotting time on the protein composition of serum samples based on LC-MS data JO - J Chromatogr B Analyt Technol Biomed Life Sci Y1 - 2008/11/1 SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.jchromb.2008.10.029 ER - TY - JOUR A1 - Ta-tsen Soong A1 - Kazimierz O. Wrzeszczynski A1 - Burkhard Rost T1 - Physical protein-protein interactions predicted from microarrays JO - Bioinformatics Y1 - 2008 SP - 2608 EP - 2614 VL - 24 IS - 22 UR - http://dx.doi.org/10.1093/bioinformatics/btn498 ER - TY - JOUR T1 - Cover Picture: Electrophoresis 22'2008 JO - Y1 - SP - EP - VL - IS - UR - http://dx.doi.org/10.1002/elps.200890102 ER - TY - JOUR A1 - Minyue Ma A1 - Xuejiang Guo A1 - Fuqiang Wang A1 - Chun Zhao A1 - Zichuan Liu A1 - Zhonghua Shi A1 - Yufeng Wang A1 - Ping Zhang A1 - Kemei Zhang A1 - Ningling Wang A1 - Min Lin A1 - Zuomin Zhou A1 - Jiayin Liu A1 - Qingzhang Li A1 - Liu Wang A1 - Ran Huo A1 - Jiahao Sha A1 - Qi Zhou T1 - Protein Expression Profile of the Mouse Metaphase-II Oocyte JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2008 SP - 4821 EP - 4830 VL - 7 IS - 11 UR - http://dx.doi.org/10.1021/pr800392s ER - TY - JOUR T1 - From Our Sister Journal: Proteomics 22/2008 JO - PROTEOMICS Y1 - 2008 SP - 4614 EP - 4615 VL - 8 IS - 22 UR - http://dx.doi.org/10.1002/pmic.200890079 ER - TY - JOUR T1 - Call for Papers JO - ELECTROPHORESIS Y1 - 2008 SP - 4612 EP - 4614 VL - 29 IS - 22 UR - http://dx.doi.org/10.1002/elps.200890100 ER - TY - JOUR T1 - Contents: Proteomics 12/2008 JO - Y1 - SP - EP - VL - IS - UR - http://dx.doi.org/10.1002/prca.200890038 ER - TY - JOUR A1 - Cell Autophagy in Vitro and in Vivo T1 - Comparative Proteomics Study Reveals That Bacterial CpG Motifs Induce Tumor JO - Mol Cell Proteomics Y1 - 2008 SP - 2311 EP - 2322 VL - 7 IS - 12 UR - http://www.mcponline.org/cgi/content/abstract/7/12/2311?etoc ER - TY - JOUR A1 - Troshin PV A1 - Morris C A1 - Prince SM A1 - Papiz MZ T1 - Laboratory information management system for membrane protein structure initiative - from gene to crystal JO - Mol Membr Biol Y1 - 2008 SP - 639 EP - 52 VL - 25 IS - 8 UR - http://dx.doi.org/10.1080/09687680802511766 ER - TY - JOUR A1 - Agnese Viganò A1 - Marilena Ripamonti A1 - Sara De Palma A1 - Daniele Capitanio A1 - Michele Vasso A1 - Robin Wait A1 - Carsten Lundby A1 - Paolo Cerretelli A1 - Cecilia Gelfi T1 - Proteins modulation in human skeletal muscle in the early phase of adaptation to hypobaric hypoxia JO - PROTEOMICS Y1 - 2008 SP - 4668 EP - 4679 VL - 8 IS - 22 UR - http://dx.doi.org/10.1002/pmic.200800232 ER - TY - JOUR A1 - Kon OL A1 - Yip TT A1 - Ho MF A1 - Chan WH A1 - Wong WK A1 - Tan SY A1 - Ng WH A1 - Kam SY A1 - Eng AK A1 - Ho P A1 - Viner R A1 - Ong HS A1 - Kumarasinghe MP T1 - The distinctive gastric fluid proteome in gastric cancer reveals a multi-biomarker diagnostic profile JO - Y1 - SP - EP - VL - IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18950519&dopt=Abstract ER - TY - JOUR A1 - Zhongqi Zhang A1 - Hai Pan A1 - Xiaoyu Chen T1 - Mass spectrometry for structural characterization of therapeutic antibodies JO - Mass Spectrometry Reviews Y1 - 2009 SP - 147 EP - 176 VL - 28 IS - 1 UR - http://dx.doi.org/10.1002/mas.20190 ER - TY - JOUR A1 - Junjie Gao A1 - Carolyn J. Cassady T1 - Negative ion production from peptides and proteins by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry JO - Rapid Communications in Mass Spectrometry Y1 - 2008 SP - 4066 EP - 4072 VL - 22 IS - 24 UR - http://dx.doi.org/10.1002/rcm.3818 ER - TY - JOUR A1 - Marta Sanz-Garcia A1 - Inmaculada Lopez-Sanchez A1 - Pedro A. Lazo T1 - Proteomics Identification of Nuclear Ran GTPase as an Inhibitor of Human VRK1 and VRK2 (Vaccinia-related Kinase) Activities JO - Mol Cell Proteomics Y1 - 2008 SP - 2199 EP - 2214 VL - 7 IS - 11 UR - http://www.mcponline.org/cgi/content/abstract/7/11/2199?etoc ER - TY - JOUR A1 - Simon Rogers A1 - Mark Girolami A1 - Walter Kolch A1 - Katrina M. Waters A1 - Tao Liu A1 - Brian Thrall A1 - H. Steven Wiley T1 - Investigating the correspondence between transcriptomic and proteomic expression profiles using coupled cluster models JO - Bioinformatics Y1 - 2008 SP - 2894 EP - 2900 VL - 24 IS - 24 UR - http://dx.doi.org/10.1093/bioinformatics/btn553 ER - TY - JOUR A1 - Paul Dowling A1 - William Shields A1 - Sweta Rani A1 - Paula Meleady A1 - Michael Henry A1 - Per Jeppesen A1 - Lorraine O'Driscoll A1 - Martin Clynes T1 - Proteomic analysis of conditioned media from glucose responsive and glucose non-responsive phenotypes reveals a panel of secreted proteins associated with beta cell dysfunction JO - ELECTROPHORESIS Y1 - 2008 SP - 4141 EP - 4149 VL - 29 IS - 20 UR - http://dx.doi.org/10.1002/elps.200800152 ER - TY - JOUR A1 - Christina J. Booker and Ken K.-C. Yeung T1 - In-Capillary Protein Enrichment and Removal of Nonbuffering Salts Using Capillary Electrophoresis with Discontinuous Buffers JO - ANALYTICAL CHEMISTRY Y1 - 2008 SP - 8598 EP - 8604 VL - 80 IS - 22 UR - http://dx.doi.org/10.1021/ac801487m ER - TY - JOUR A1 - Sodré CL A1 - Chapeaurouge AD A1 - Kalume DE A1 - de Mendonça Lima L A1 - Perales J A1 - Fernandes O T1 - Proteomic map of Trypanosoma cruzi CL Brener: the reference strain of the genome project JO - Arch Microbiol Y1 - 2008/11/11 SP - EP - VL - IS - UR - http://dx.doi.org/10.1007/s00203-008-0439-6 ER - TY - JOUR A1 - from Tandem Mass Spectrometry Using an Error-tolerant Algorithm Based on an T1 - Unrestrictive Identification of Multiple Post-translational Modifications JO - Mol Cell Proteomics Y1 - 2008 SP - 2452 EP - 2463 VL - 7 IS - 12 UR - http://www.mcponline.org/cgi/content/abstract/7/12/2452?etoc ER - TY - JOUR A1 - Vittoria Cenni A1 - Jessika Bertacchini A1 - Francesca Beretti A1 - Giovanna Lattanzi A1 - Alberto Bavelloni A1 - Massimo Riccio A1 - Maria Ruzzene A1 - Oriano Marin A1 - Giorgio Arrigoni A1 - Veena Parnaik A1 - Manfred Wehnert A1 - Nadir M. Maraldi A1 - Anto de Pol A1 - Lucio Cocco A1 - Sandra Marmiroli T1 - Lamin A Ser404 Is a Nuclear Target of Akt Phosphorylation in C2C12 Cells JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2008 SP - 4727 EP - 4735 VL - 7 IS - 11 UR - http://dx.doi.org/10.1021/pr800262g ER - TY - JOUR A1 - Wheelock AM A1 - Wheelock CE T1 - From Genome to Proteome: Integration and proteome completion - 8th Siena meeting JO - IDrugs Y1 - 2008 SP - 799 EP - 802 VL - 11 IS - 11 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18988122&dopt=Abstract ER - TY - JOUR A1 - Dihui Lu A1 - Richard Z. Liu A1 - Victoria Izumi A1 - David Fenstermacher A1 - Eric B. Haura A1 - John Koomen A1 - Steven A. Eschrich T1 - IPEP: an in silico tool to examine proteolytic peptides for mass spectrometry JO - Bioinformatics Y1 - 2008 SP - 2801 EP - 2802 VL - 24 IS - 23 UR - http://dx.doi.org/10.1093/bioinformatics/btn511 ER - TY - JOUR A1 - Wood TK T1 - Molecular approaches in bioremediation JO - Curr Opin Biotechnol Y1 - 2008 SP - 572 EP - 578 VL - 19 IS - 6 UR - http://dx.doi.org/10.1016/j.copbio.2008.10.003 ER - TY - JOUR A1 - Mischak H A1 - Coon JJ A1 - Novak J A1 - Weissinger EM A1 - Schanstra JP A1 - Dominiczak AF T1 - Capillary electrophoresis-mass spectrometry as a powerful tool in biomarker discovery and clinical diagnosis: An update of recent developments JO - Mass Spectrom Rev Y1 - 2008/10/30 SP - EP - VL - IS - UR - http://dx.doi.org/10.1002/mas.20205 ER - TY - JOUR A1 - Kijanka G A1 - Ipcho S A1 - Baars S A1 - Chen H A1 - Hadley K A1 - Beveridge A A1 - Gould E A1 - Murphy D T1 - Rapid characterization of binding specificity and cross-reactivity of antibodies using recombinant human protein arrays JO - J Immunol Methods Y1 - 2008/11/6 SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.jim.2008.10.008 ER - TY - JOUR A1 - Li SJ A1 - Peng M A1 - Li H A1 - Liu BS A1 - Wang C A1 - Wu JR A1 - Li YX A1 - Zeng R T1 - Sys-BodyFluid: a systematical database for human body fluid proteome research JO - Nucleic Acids Res Y1 - 2008 Oct 31 SP - EP - VL - IS - UR - http://dx.doi.org/10.1093/nar/gkn849 ER - TY - JOUR A1 - Llewellyn R A1 - Eisenberg DS T1 - Annotating proteins with generalized functional linkages JO - Proc Natl Acad Sci U S A Y1 - 2008 SP - 17700 EP - 5 VL - 105 IS - 46 UR - http://dx.doi.org/10.1073/pnas.0809583105 ER - TY - JOUR A1 - Fu Yang A1 - Fang Wang A1 - Yingjun Guo A1 - Qi Zhou A1 - Yue Wang A1 - Yixuan Yin A1 - Shuhan Sun T1 - Enhanced Capacity of Antigen Presentation of HBc-VLP-Pulsed RAW264.7 Cells Revealed by Proteomics Analysis JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2008 SP - 4898 EP - 4903 VL - 7 IS - 11 UR - http://dx.doi.org/10.1021/pr800547v ER - TY - JOUR A1 - Long Term Effects on the Developing Cerebral Cortex T1 - Brief Alteration of NMDA or GABAA Receptor-mediated Neurotransmission Has JO - Mol Cell Proteomics Y1 - 2008 SP - 2293 EP - 2310 VL - 7 IS - 12 UR - http://www.mcponline.org/cgi/content/abstract/7/12/2293?etoc ER - TY - JOUR A1 - Daniela Volke A1 - Ralf Hoffmann T1 - Quantitative proteomics by fluorescent labeling of cysteine residues using a set of two cyanine-based or three rhodamine-based dyes JO - ELECTROPHORESIS Y1 - 2008 SP - 4516 EP - 4526 VL - 29 IS - 22 UR - http://dx.doi.org/10.1002/elps.200800092 ER - TY - JOUR A1 - Sheng Wang A1 - Bangguo Wei A1 - Pengyuan Yang A1 - Gang Chen T1 - Alternating current-assisted on-plate proteolysis for MALDI-TOF MS peptide mapping JO - PROTEOMICS Y1 - 2008 SP - 4637 EP - 4641 VL - 8 IS - 22 UR - http://dx.doi.org/10.1002/pmic.200800401 ER - TY - JOUR A1 - Jingqing Gao A1 - Dianjun Liu A1 - Zhenxin Wang T1 - Microarray-Based Study of Carbohydrate−Protein Binding by Gold Nanoparticle Probes JO - ANALYTICAL CHEMISTRY Y1 - 2008 SP - 8822 EP - 8827 VL - 80 IS - 22 UR - http://dx.doi.org/10.1021/ac8015328 ER - TY - JOUR A1 - Jayson A. Falkner A1 - Jarret W. Falkner A1 - Anastasia K. Yocum A1 - Philip C. Andrews T1 - A Spectral Clustering Approach to MS/MS Identification of Post-Translational Modifications JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2008 SP - 4614 EP - 4622 VL - 7 IS - 11 UR - http://dx.doi.org/10.1021/pr800226w ER - TY - JOUR A1 - Emilia Szajli A1 - Tamas Feher A1 - Katalin F. Medzihradszky T1 - Investigating the Quantitative Nature of MALDI-TOF MS JO - Mol Cell Proteomics Y1 - 2008 SP - 2410 EP - 2418 VL - 7 IS - 12 UR - http://www.mcponline.org/cgi/content/abstract/7/12/2410?etoc ER - TY - JOUR A1 - Lovegrove A A1 - Salt L A1 - Shewry PR T1 - Establishing substantial equivalence: proteomics JO - Methods Mol Biol Y1 - 2009 SP - 273 EP - 88 VL - 478 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19009451&dopt=Abstract ER - TY - JOUR A1 - Tatiana Yu. Samgina A1 - Konstantin A. Artemenko A1 - Vladimir A. Gorshkov A1 - Sergey V. Ogourtsov A1 - Roman A. Zubarev A1 - Albert T. Lebedev T1 - De novo sequencing of peptides secreted by the skin glands of the Caucasian Green Frog Rana ridibunda JO - Rapid Communications in Mass Spectrometry Y1 - 2008 SP - 3517 EP - 3525 VL - 22 IS - 22 UR - http://dx.doi.org/10.1002/rcm.3759 ER - TY - JOUR A1 - Mikkel Nissum and Aude L Foucher T1 - Analysis of human plasma proteins: a focus on sample collection and separation using free-flow electrophoresis JO - Expert Review of Proteomics Y1 - 2008 SP - 571 EP - 587 VL - 5 IS - 4 UR - http://dx.doi.org/10.1586/14789450.5.4.571 ER - TY - JOUR A1 - Bor-Chih Cheng A1 - Ching-Ping Chang A1 - Yeou-Guang Tsay A1 - Ting-Feng Wu A1 - Chiung-Yueh Hsu A1 - Mao-Tsun Lin T1 - Body Cooling Causes Normalization of Cardiac Protein Expression and Function in a Rat Heatstroke Model JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2008 SP - 4935 EP - 4945 VL - 7 IS - 11 UR - http://dx.doi.org/10.1021/pr8000089 ER - TY - JOUR A1 - Carsten Jers A1 - Boumediene Soufi A1 - Christophe Grangeasse A1 - Josef Deutscher A1 - Ivan Mijakovic T1 - Phosphoproteomics in bacteria: towards a systemic understanding of bacterial phosphorylation networks JO - Expert Review of Proteomics Y1 - 2008 SP - 619 EP - 627 VL - 5 IS - 4 UR - http://dx.doi.org/10.1586/14789450.5.4.619 ER - TY - JOUR A1 - Xu C A1 - Huang B T1 - Root proteomic responses to heat stress in two Agrostis grass species contrasting in heat tolerance JO - J Exp Bot Y1 - 2008 SP - 4183 EP - 94 VL - 59 IS - 15 UR - http://dx.doi.org/10.1093/jxb/ern258 ER - TY - JOUR A1 - Steve Wilson and Dawn J Mazzatti T1 - Current status and future prospects in the search for protein biomarkers of immunosenescence JO - Expert Review of Proteomics Y1 - 2008 SP - 561 EP - 569 VL - 5 IS - 4 UR - http://dx.doi.org/10.1586/14789450.5.4.561 ER - TY - JOUR A1 - Wright CA A1 - Edelmann M A1 - Digleria K A1 - Kollnberger S A1 - Kramer H A1 - McGowan S A1 - McHugh K A1 - Taylor S A1 - Kessler BM A1 - Bowness P T1 - Ankylosing spondylitis monocytes show upregulation of proteins involved in inflammation and the Ubiquitin Proteasome pathway JO - Ann Rheum Dis Y1 - 2008/10/24 SP - EP - VL - IS - UR - http://dx.doi.org/10.1136/ard.2008.097204 ER - TY - JOUR A1 - Joon Shin A1 - Woonghee Lee A1 - Weontae Lee T1 - Structural proteomics by NMR spectroscopy JO - Expert Review of Proteomics Y1 - 2008 SP - 589 EP - 601 VL - 5 IS - 4 UR - http://dx.doi.org/10.1586/14789450.5.4.589 ER - TY - JOUR A1 - Paul J. Boersema A1 - Thin Thin Aye A1 - Toon A. B. van Veen A1 - Albert J. R. Heck A1 - Shabaz Mohammed T1 - Triplex protein quantification based on stable isotope labeling by peptide dimethylation applied to cell and tissue lysates JO - PROTEOMICS Y1 - 2008 SP - 4624 EP - 4632 VL - 8 IS - 22 UR - http://dx.doi.org/10.1002/pmic.200800297 ER - TY - JOUR A1 - (Protein Associated with Myc) during Spinal Nociceptive Processing T1 - Toponomics Analysis of Functional Interactions of the Ubiquitin Ligase PAM JO - Mol Cell Proteomics Y1 - 2008 SP - 2475 EP - 2485 VL - 7 IS - 12 UR - http://www.mcponline.org/cgi/content/abstract/7/12/2475?etoc ER - TY - JOUR A1 - Aaron G. Poth A1 - Hilton C. Deeth A1 - Paul F. Alewood A1 - John W. Holland T1 - Analysis of the Human Casein Phosphoproteome by 2-D Electrophoresis and MALDI-TOF/TOF MS Reveals New Phosphoforms JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2008 SP - 5017 EP - 5027 VL - 7 IS - 11 UR - http://dx.doi.org/10.1021/pr800387s ER - TY - JOUR A1 - Benjamin Mann A1 - Milan Madera A1 - Quanhu Sheng A1 - Haixu Tang A1 - Yehia Mechref A1 - Milos V. Novotny T1 - ProteinQuant Suite: a bundle of automated software tools for label-free quantitative proteomics JO - Rapid Communications in Mass Spectrometry Y1 - 2008 SP - 3823 EP - 3834 VL - 22 IS - 23 UR - http://dx.doi.org/10.1002/rcm.3781 ER - TY - JOUR A1 - Chu CY A1 - Poon CW A1 - Pong CF A1 - Pang CP A1 - Wang CC T1 - Human normal tear proteome JO - Graefes Arch Clin Exp Ophthalmol Y1 - 2008/10/25 SP - EP - VL - IS - UR - http://dx.doi.org/10.1007/s00417-008-0974-5 ER - TY - JOUR A1 - Kreusch S A1 - Schulze M A1 - Cumme GA A1 - Ditze G A1 - Moore T A1 - Rhode H T1 - Searching biomarker candidates in serum using multidimensional native chromatography I. Enhanced separation method JO - J Chromatogr B Y1 - 2008 SP - 567 EP - 72 VL - 875 IS - 2 UR - http://dx.doi.org/10.1016/j.jchromb.2008.09.040 ER - TY - JOUR A1 - Montazery-Kordy H A1 - Miran-Baygi MH A1 - Moradi MH T1 - A data-mining approach to biomarker identification from protein profiles discrete stationary wavelet transform JO - J Zhejiang Univ Sci B Y1 - 2008 SP - 863 EP - 70 VL - 9 IS - 11 UR - http://dx.doi.org/10.1631/jzus.B0820163 ER - TY - JOUR A1 - Thurau M A1 - Marquardt G A1 - Gonin-Laurent N A1 - Weinlander K A1 - Naschberger E A1 - Jochmann R A1 - Alkharsah KR A1 - Schulz TF A1 - Thome M A1 - Neipel F A1 - Sturzl M T1 - The Viral Inhibitor of Apoptosis vFLIP/K13 Protects Endothelial Cells Superoxide-induced Cell Death JO - J Virol Y1 - 2008 Nov 5 SP - EP - VL - IS - UR - http://dx.doi.org/10.1128/JVI.00629-08 ER - TY - JOUR A1 - Sara de Mateo A1 - Juan Martínez-Heredia A1 - Josep Maria Estanyol A1 - David Domíguez-Fandos A1 - José Manuel Vidal-Taboada A1 - José Luis Ballescà A1 - Rafael Oliva T1 - Marked correlations in protein expression identified by proteomic analysis of human spermatozoa JO - Y1 - SP - EP - VL - IS - UR - http://dx.doi.org/10.1002/pmic.200890081 ER - TY - JOUR A1 - Haojie Lu A1 - Chenggong Zong A1 - Yueju Wang A1 - Glen W. Young A1 - Ning Deng A1 - Pete Souda A1 - Xiaohai Li A1 - Julian Whitelegge A1 - Oliver Drews A1 - Peng-Yuan Yang A1 - Peipei Ping T1 - Revealing the Dynamics of the 20 S Proteasome Phosphoproteome: A Combined CID and Electron Transfer Dissociation Approach JO - Mol Cell Proteomics Y1 - 2008 SP - 2073 EP - 2089 VL - 7 IS - 11 UR - http://www.mcponline.org/cgi/content/abstract/7/11/2073?etoc ER - TY - JOUR A1 - Proteomics T1 - Significance Analysis of Spectral Count Data in Label-free Shotgun JO - Mol Cell Proteomics Y1 - 2008 SP - 2373 EP - 2385 VL - 7 IS - 12 UR - http://www.mcponline.org/cgi/content/abstract/7/12/2373?etoc ER - TY - JOUR A1 - Zhulong Chan A1 - Qing Wang A1 - Xiangbin Xu A1 - Xianghong Meng A1 - Guozheng Qin A1 - Boqiang Li A1 - Shiping Tian T1 - Functions of defense-related proteins and dehydrogenases in resistance response induced by salicylic acid in sweet cherry fruits at different maturity stages JO - PROTEOMICS Y1 - 2008 SP - 4791 EP - 4807 VL - 8 IS - 22 UR - http://dx.doi.org/10.1002/pmic.200701155 ER - TY - JOUR A1 - Young-An Bae A1 - Yeon-Tack Jeong A1 - Joon-Yong Chung A1 - Seon-Hee Kim A1 - Jagadish Mahanta A1 - Zheng Feng A1 - Chom-Kyu Chong A1 - Tong-Soo Kim A1 - Yoon Kong T1 - A recombinant chimeric antigen toward a standardized serodiagnosis of Taenia solium neurocysticercosis JO - PROTEOMICS - CLINICAL APPLICATIONS Y1 - 2008 SP - 1596 EP - 1610 VL - 2 IS - 12 UR - http://dx.doi.org/10.1002/prca.200800084 ER - TY - JOUR A1 - Saheki T A1 - Ito H A1 - Sekiguchi A A1 - Nishina A A1 - Sugiyama T A1 - Izumi T A1 - Kojima I T1 - Proteomic analysis identifies proteins that continue to grow hepatic stem-like cells without differentiation JO - Cytotechnology Y1 - 2008 SP - 137 EP - 43 VL - 57 IS - 2 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19003158&dopt=Abstract ER - TY - JOUR A1 - Pragya Singh A1 - Scott A. Shaffer A1 - Alexander Scherl A1 - Carol Holman A1 - Richard A. Pfuetzner A1 - Theodore J. Larson Freeman A1 - Samuel I. Miller A1 - Patricia Hernandez A1 - Ron D. Appel A1 - David R. Goodlett T1 - Characterization of Protein Cross-Links via Mass Spectrometry and an Open-Modification Search Strategy JO - ANALYTICAL CHEMISTRY Y1 - 2008 SP - 8799 EP - 8806 VL - 80 IS - 22 UR - http://dx.doi.org/10.1021/ac801646f ER - TY - JOUR A1 - Lujian Liao A1 - Daniel B. McClatchy A1 - Sung Kyu Park A1 - Tao Xu A1 - Bingwen Lu A1 - John R. Yates III T1 - Quantitative Analysis of Brain Nuclear Phosphoproteins Identifies Developmentally Regulated Phosphorylation Events JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2008 SP - 4743 EP - 4755 VL - 7 IS - 11 UR - http://dx.doi.org/10.1021/pr8003198 ER - TY - JOUR A1 - Julio E. Celis A1 - Steven A. Carr A1 - Ralph A. Bradshaw T1 - New Guidelines for Clinical Proteomics Manuscripts JO - Mol Cell Proteomics Y1 - 2008 SP - 2071 EP - 2072 VL - 7 IS - 11 UR - http://www.mcponline.org/cgi/content/full/7/11/2071?etoc ER - TY - JOUR A1 - Nguyen TT A1 - Michaud D A1 - Cloutier C T1 - A proteomic analysis of the aphid Macrosiphum euphorbiae under heat and radiation stress JO - Insect Biochem Mol Biol Y1 - 2008/11/1 SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.ibmb.2008.09.014 ER - TY - JOUR A1 - Wei-Tao Cong A1 - Sun-Young Hwang A1 - Li-Tai Jin A1 - Jung-Kap Choi T1 - Sensitive fluorescent staining for proteomic analysis of proteins in 1-D and 2-D SDS-PAGE and its comparison with SYPRO Ruby by PMF JO - ELECTROPHORESIS Y1 - 2008 SP - 4304 EP - 4315 VL - 29 IS - 21 UR - http://dx.doi.org/10.1002/elps.200800150 ER - TY - JOUR A1 - Daehee Hwang A1 - Ning Zhang A1 - Hookeun Lee A1 - Eugene Yi A1 - Hui Zhang A1 - Inyoul Y. Lee A1 - Leroy Hood A1 - Ruedi Aebersold T1 - MS-BID: a Java package for label-free LC-MS-based comparative proteomic analysis JO - Bioinformatics Y1 - 2008 SP - 2641 EP - 2642 VL - 24 IS - 22 UR - http://dx.doi.org/10.1093/bioinformatics/btn491 ER - TY - JOUR A1 - Eizadora T. Yu A1 - Arie Hawkins A1 - Irwin D. Kuntz A1 - Larry A. Rahn A1 - Andrew Rothfuss A1 - Kenneth Sale A1 - Malin M. Young A1 - Christine L. Yang A1 - Carmen M. Pancerella A1 - Daniele Fabris T1 - The Collaboratory for MS3D: A New Cyberinfrastructure for the Structural Elucidation of Biological Macromolecules and Their Assemblies Using Mass Spectrometry-Based Approaches JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2008 SP - 4848 EP - 4857 VL - 7 IS - 11 UR - http://dx.doi.org/10.1021/pr800443f ER - TY - JOUR A1 - Buhimschi IA A1 - Zhao G A1 - Funai EF A1 - Harris N A1 - Sasson IE A1 - Bernstein IM A1 - Saade GR A1 - Buhimschi CS T1 - Proteomic profiling of urine identifies specific fragments of SERPINA1 albumin as biomarkers of preeclampsia JO - Am J Obstet Gynecol Y1 - 2008 SP - 551.e1 EP - 16 VL - 199 IS - 5 UR - http://dx.doi.org/10.1016/j.ajog.2008.07.006 ER - TY - JOUR A1 - P. Aaron Kirkland A1 - Matthew A. Humbard A1 - Charles J. Daniels A1 - Julie A. Maupin-Furlow T1 - Shotgun Proteomics of the Haloarchaeon Haloferax volcanii JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2008 SP - 5033 EP - 5039 VL - 7 IS - 11 UR - http://dx.doi.org/10.1021/pr800517a ER - TY - JOUR A1 - Nagarjuna Nagaraj A1 - Aiping Lu A1 - Matthias Mann A1 - Jacek R. Wiśniewski T1 - Detergent-Based but Gel-Free Method Allows Identification of Several Hundred Membrane Proteins in Single LC-MS Runs JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2008 SP - 5028 EP - 5032 VL - 7 IS - 11 UR - http://dx.doi.org/10.1021/pr800412j ER - TY - JOUR A1 - Gorden Redlich A1 - Ulrich M. Zanger A1 - Stephan Riedmaier A1 - Nicolai Bache A1 - Anders B. M. Giessing A1 - Martin Eisenacher A1 - Christian Stephan A1 - Helmut E. Meyer A1 - Ole N. Jensen A1 - Katrin Marcus T1 - Distinction between Human Cytochrome P450 (CYP) Isoforms and Identification of New Phosphorylation Sites by Mass Spectrometry JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2008 SP - 4678 EP - 4688 VL - 7 IS - 11 UR - http://dx.doi.org/10.1021/pr800231w ER - TY - JOUR A1 - Alexander Schmidt A1 - Nils Gehlenborg A1 - Bernd Bodenmiller A1 - Lukas N. Mueller A1 - Dave Campbell A1 - Markus Mueller A1 - Ruedi Aebersold A1 - Bruno Domon T1 - An Integrated, Directed Mass Spectrometric Approach for In-depth Characterization of Complex Peptide Mixtures JO - Mol Cell Proteomics Y1 - 2008 SP - 2138 EP - 2150 VL - 7 IS - 11 UR - http://www.mcponline.org/cgi/content/abstract/7/11/2138?etoc ER - TY - JOUR T1 - Proteomics today: Bioinformatics at its best. Proteomics and Bioinformatics - an inseparable couple JO - PROTEOMICS Y1 - 2008 SP - 4616 EP - 4617 VL - 8 IS - 22 UR - http://dx.doi.org/10.1002/pmic.200890080 ER - TY - JOUR A1 - Latterich M A1 - Abramovitz M A1 - Leyland-Jones B T1 - Proteomics: new technologies and clinical applications JO - Eur J Cancer Y1 - 2008 SP - 2737 EP - 41 VL - 44 IS - 18 UR - http://dx.doi.org/10.1016/j.ejca.2008.09.007 ER - TY - JOUR A1 - Cruz-Monteagudo M A1 - Munteanu CR A1 - Borges F A1 - Cordeiro MN A1 - Uriarte E A1 - González-Díaz H T1 - Quantitative Proteome-Property Relationships (QPPRs). 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Vakser T1 - DOCKGROUND protein-protein docking decoy set JO - Bioinformatics Y1 - 2008 SP - 2634 EP - 2635 VL - 24 IS - 22 UR - http://dx.doi.org/10.1093/bioinformatics/btn497 ER - TY - JOUR A1 - Keyvan Aghaei A1 - Ali Akbar Ehsanpour A1 - Setsuko Komatsu T1 - Proteome Analysis of Potato under Salt Stress JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2008 SP - 4858 EP - 4868 VL - 7 IS - 11 UR - http://dx.doi.org/10.1021/pr800460y ER - TY - JOUR A1 - William Burkitt A1 - Gavin O'Connor T1 - Assessment of the repeatability and reproducibility of hydrogen/deuterium exchange mass spectrometry measurements JO - Rapid Communications in Mass Spectrometry Y1 - 2008 SP - 3893 EP - 3901 VL - 22 IS - 23 UR - http://dx.doi.org/10.1002/rcm.3794 ER - TY - JOUR A1 - Coffman FD T1 - Chitinase 3-Like-1 (CHI3L1): a putative disease marker at the interface of proteomics and glycomics JO - Crit Rev Clin Lab Sci Y1 - 2008 SP - 531 EP - 62 VL - 45 IS - 6 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19003601&dopt=Abstract ER - TY - JOUR A1 - Naomi Walsh A1 - Paul Dowling A1 - Norma O'Donovan A1 - Michael Henry A1 - Paula Meleady and Martin Clynes T1 - Aldehyde dehydrogenase 1A1 and gelsolin identified as novel invasion-modulating factors in conditioned medium of pancreatic cancer cells JO - Journal of Proteomics Y1 - 2008 SP - 561 EP - 571 VL - 71 IS - 5 UR - http://www.sciencedirect.com/science?_ob=GatewayURL&_method=citationSearch&_urlVersion=4&_origin=SDVIALERTASCII&_version=1&_uoikey=B8JDC-4THSXBT-1&md5=ba9e5b4b901668827e3d96ddaf8e0e26 ER - TY - JOUR A1 - Pike LJ T1 - The challenge of lipid rafts JO - J Lipid Res Y1 - 2008/10/27 SP - EP - VL - IS - UR - http://dx.doi.org/10.1194/jlr.R800040-JLR200 ER - TY - JOUR A1 - Louise N. 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Bryson T1 - Investigations into charge heterogeneity of wool intermediate filament proteins JO - Journal of Proteomics Y1 - 2008 SP - 513 EP - 529 VL - 71 IS - 5 UR - http://www.sciencedirect.com/science?_ob=GatewayURL&_method=citationSearch&_urlVersion=4&_origin=SDVIALERTASCII&_version=1&_uoikey=B8JDC-4TCYCMP-1&md5=b80760d0300b740500452a74a3ca32d3 ER - TY - JOUR A1 - Pyong-Gon Moon A1 - Hyun-Ho Hwang A1 - Yong Chool Boo A1 - Joseph Kwon A1 - Je-Yoel Cho A1 - Moon-Chang Baek T1 - Identification of rat urinary glycoproteome captured by three lectins using gel and LC-based proteomics JO - ELECTROPHORESIS Y1 - 2008 SP - 4324 EP - 4331 VL - 29 IS - 21 UR - http://dx.doi.org/10.1002/elps.200800070 ER - TY - JOUR A1 - Hua Wang A1 - Jun Wang A1 - Charles Timchalk A1 - Yuehe Lin T1 - Magnetic Electrochemical Immunoassays with Quantum Dot Labels for Detection of Phosphorylated Acetylcholinesterase in Plasma JO - ANALYTICAL CHEMISTRY Y1 - 2008 SP - 8477 EP - 8484 VL - 80 IS - 22 UR - http://dx.doi.org/10.1021/ac801211s ER - TY - JOUR A1 - Elena Albè A1 - Jin-Hong Chang A1 - Nathalie F. Azar A1 - Alexander R. Ivanov A1 - Dimitri T. Azar T1 - Proteomic Analysis of the Hyaloid Vascular System Regression during Ocular Development JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2008 SP - 4904 EP - 4913 VL - 7 IS - 11 UR - http://dx.doi.org/10.1021/pr800551m ER - TY - JOUR A1 - Omer Deutsch A1 - Yoram Fleissig A1 - Batia Zaks A1 - Guy Krief A1 - Doron J. Aframian A1 - Aaron Palmon T1 - An approach to remove alpha amylase for proteomic analysis of low abundance biomarkers in human saliva JO - ELECTROPHORESIS Y1 - 2008 SP - 4150 EP - 4157 VL - 29 IS - 20 UR - http://dx.doi.org/10.1002/elps.200800207 ER - TY - JOUR A1 - Lustgarten JL A1 - Gopalakrishnan V A1 - Grover H A1 - Visweswaran S T1 - Improving classification performance with discretization on biomedical datasets JO - AMIA Annu Symp Proc Y1 - 2008 SP - 445 EP - 9 VL - IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18999186&dopt=Abstract ER - TY - JOUR A1 - Hiroshi Kawasaki A1 - Akiko Okayama A1 - Yuko Iwafune A1 - Shota Yahagi A1 - Noriaki Arakawa A1 - Hisashi Hirano T1 - Multiplex detection and identification of proteins on a PVDF membrane blocked with a synthetic polymer-based reagent JO - ELECTROPHORESIS Y1 - 2008 SP - 4377 EP - 4380 VL - 29 IS - 21 UR - http://dx.doi.org/10.1002/elps.200800200 ER - TY - JOUR A1 - Pan Z A1 - Guan R A1 - Zhu S A1 - Deng X T1 - Proteomic analysis of somatic embryogenesis in Valencia sweet orange sinensis Osbeck) JO - Plant Cell Rep Y1 - 2008 Nov 7 SP - EP - VL - IS - UR - http://dx.doi.org/10.1007/s00299-008-0633-7 ER - TY - JOUR A1 - Paul J. Trim A1 - Claire M. Henson A1 - Jennie L. Avery A1 - Andrew McEwen A1 - Marten F. Snel A1 - Emmanuelle Claude A1 - Peter S. Marshall A1 - Andrew West A1 - Alessandra P. Princivalle A1 - Malcolm R. Clench T1 - Matrix-Assisted Laser Desorption/Ionization-Ion Mobility Separation-Mass Spectrometry Imaging of Vinblastine in Whole Body Tissue Sections JO - ANALYTICAL CHEMISTRY Y1 - 2008 SP - 8628 EP - 8634 VL - 80 IS - 22 UR - http://dx.doi.org/10.1021/ac8015467 ER - TY - JOUR A1 - Xuequn Chen A1 - Peter J. Ulintz A1 - Eric S. Simon A1 - John A. Williams A1 - Philip T1 - Global Topology Analysis of Pancreatic Zymogen Granule Membrane Proteins JO - Mol Cell Proteomics Y1 - 2008 SP - 2323 EP - 2336 VL - 7 IS - 12 UR - http://www.mcponline.org/cgi/content/abstract/7/12/2323?etoc ER - TY - JOUR A1 - Jentaie Shiea A1 - Yi-Tzu Cho A1 - Yen-Hsiu Lin A1 - Chin-Wen Chang A1 - Li-Hua Lo A1 - Yi-Chern Lee A1 - Hung-Lung Ke A1 - Wen-Jeng Wu A1 - Deng-Chyang Wu T1 - Using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry to rapidly screen for albuminuria JO - Rapid Communications in Mass Spectrometry Y1 - 2008 SP - 3754 EP - 3760 VL - 22 IS - 23 UR - http://dx.doi.org/10.1002/rcm.3792 ER - TY - JOUR A1 - Seesandra V. Rajagopala A1 - Johannes Goll A1 - N.D. Deve Gowda A1 - Kumar C. Sunil A1 - Bjorn Titz A1 - Arnab Mukherjee A1 - Sharmila S. Mary A1 - Naresh Raviswaran A1 - Chetan S. Poojari A1 - Srinivas Ramachandra A1 - Svetlana Shtivelband A1 - Stephen M. Blazie A1 - Julia Hofmann A1 - Peter Uetz T1 - MPI-LIT: a literature-curated dataset of microbial binary protein--protein interactions JO - Bioinformatics Y1 - 2008 SP - 2622 EP - 2627 VL - 24 IS - 22 UR - http://dx.doi.org/10.1093/bioinformatics/btn481 ER - TY - JOUR A1 - Das S A1 - Maeso PA A1 - Becker AM A1 - Prosser JD A1 - Adam BL A1 - Kountakis SE T1 - Proteomics blood testing to distinguish chronic rhinosinusitis subtypes JO - Laryngoscope Y1 - 2008 SP - 2231 EP - 4 VL - 118 IS - 12 UR - http://dx.doi.org/10.1097/MLG.0b013e318182f7f4 ER - TY - JOUR A1 - Manually Validating Selected Results T1 - Peptizer, a Tool for Assessing False Positive Peptide Identifications and JO - Mol Cell Proteomics Y1 - 2008 SP - 2364 EP - 2372 VL - 7 IS - 12 UR - http://www.mcponline.org/cgi/content/abstract/7/12/2364?etoc ER - TY - JOUR A1 - Förster JR A1 - Lochnit G A1 - Stöhr H T1 - Proteomic analysis of the membrane palmitoylated protein-4 (MPP4)-associated protein complex in the retina JO - Exp Eye Res Y1 - 2008/10/9 SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.exer.2008.09.016 ER - TY - JOUR A1 - Anne-Claude Gavin A1 - Ruedi Aebersold A1 - Albert J. R. Heck T1 - Meeting Report on the 7th World Congress of the Human Proteome Organization (HUPO) in Amsterdam: Proteome Biology JO - Mol Cell Proteomics Y1 - 2008 SP - 2288 EP - 2291 VL - 7 IS - 11 UR - http://www.mcponline.org/cgi/content/abstract/7/11/2288?etoc ER - TY - JOUR A1 - Murray Hackett T1 - Science, marketing and wishful thinking in quantitative proteomics JO - PROTEOMICS Y1 - 2008 SP - 4618 EP - 4623 VL - 8 IS - 22 UR - http://dx.doi.org/10.1002/pmic.200800358 ER - TY - JOUR A1 - Kevin M. Downard A1 - Bethny Morrissey A1 - Alexander B. Schwahn T1 - Mass spectrometry analysis of the influenza virus JO - Mass Spectrometry Reviews Y1 - 2009 SP - 35 EP - 49 VL - 28 IS - 1 UR - http://dx.doi.org/10.1002/mas.20194 ER - TY - JOUR A1 - Kim HR A1 - Naruse K A1 - Lee HR A1 - Han RX A1 - Park CS A1 - Jin DI T1 - Abnormal Expression of TIMP-2, SOD, Vimentin and PAI Proteins in Cloned Bovine Placentae JO - Reprod Domest Anim Y1 - 2008/10/22 SP - EP - VL - IS - UR - http://dx.doi.org/10.1111/j.1439-0531.2007.01058.x ER - TY - JOUR A1 - Annalisa Vilasi A1 - Pedro R. Cutillas A1 - Robert J. Unwin T1 - Application of proteomic techniques to the study of urine and renal tissue JO - PROTEOMICS - CLINICAL APPLICATIONS Y1 - 2008 SP - 1564 EP - 1574 VL - 2 IS - 12 UR - http://dx.doi.org/10.1002/prca.200800035 ER - TY - JOUR A1 - Almudena Pacheco A1 - Sandrine Reigadas A1 - Encarnación Martínez-Salas T1 - Riboproteomic analysis of polypeptides interacting with the internal ribosome-entry site element of foot-and-mouth disease viral RNA JO - PROTEOMICS Y1 - 2008 SP - 4782 EP - 4790 VL - 8 IS - 22 UR - http://dx.doi.org/10.1002/pmic.200800338 ER - TY - JOUR A1 - Lustgarten JL A1 - Visweswaran S A1 - Grover H A1 - Kimmel CP A1 - Ryberg HL A1 - Bowser RP A1 - Gopalakrishnan V A1 - Hogan W T1 - Using a novel resource to decrease proteomic biomarker identification time JO - Y1 - SP - EP - VL - IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18999243&dopt=Abstract ER - TY - JOUR T1 - Cover Picture: Proteomics 22/2008 JO - Y1 - SP - EP - VL - IS - UR - http://dx.doi.org/10.1002/pmic.200890082 ER - TY - JOUR A1 - Bhasi A A1 - Philip P A1 - Manikandan V A1 - Senapathy P T1 - ExDom: an integrated database for comparative analysis of the structures of protein domains in eukaryotes JO - Nucleic Acids Res Y1 - 2008 Nov 4 SP - EP - VL - IS - UR - http://dx.doi.org/10.1093/nar/gkn746 ER - TY - JOUR A1 - Carberry S A1 - Doyle S T1 - Proteomic studies in biomedically and industrially relevant fungi JO - Cytotechnology Y1 - 2007 SP - 95 EP - 100 VL - 53 IS - 1-3 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19003194&dopt=Abstract ER - TY - JOUR A1 - Caroline Cieniewski-Bernard A1 - Paul Mulder A1 - Jean-Paul Henry A1 - Hervé Drobecq A1 - Emilie Dubois A1 - Gwënaël Pottiez A1 - Christian Thuillez A1 - Philippe Amouyel A1 - Vincent Richard A1 - Florence Pinet T1 - Proteomic Analysis of Left Ventricular Remodeling in an Experimental Model of Heart Failure JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2008 SP - 5004 EP - 5016 VL - 7 IS - 11 UR - http://dx.doi.org/10.1021/pr800409u ER - TY - JOUR A1 - Isoforms Are Specifically Recognized by IgG Autoantibodies in Multiple T1 - Transketolase and 2',3'-Cyclic-nucleotide 3'-Phosphodiesterase Type I JO - Mol Cell Proteomics Y1 - 2008 SP - 2337 EP - 2349 VL - 7 IS - 12 UR - http://www.mcponline.org/cgi/content/abstract/7/12/2337?etoc ER - TY - JOUR A1 - Morris CF A1 - Castro MS A1 - Fontes W T1 - Neutrophil proteome: lessons from different standpoints JO - Protein Pept Lett Y1 - 2008 SP - 995 EP - 1001 VL - 15 IS - 9 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18991777&dopt=Abstract ER - TY - JOUR A1 - Rohit G. Saldanha A1 - Ning Xu A1 - Mark P. Molloy A1 - Duncan A. Veal A1 - Mark S. Baker T1 - Differential Proteome Expression Associated with Urokinase Plasminogen Activator Receptor (uPAR) Suppression in Malignant Epithelial Cancer JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2008 SP - 4792 EP - 4806 VL - 7 IS - 11 UR - http://dx.doi.org/10.1021/pr800357h ER - TY - JOUR A1 - Katie Cottingham T1 - Proteomics researchers now agree on some aspects of data sharing JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2008 SP - 4612 EP - 4612 VL - 7 IS - 11 UR - http://dx.doi.org/10.1021/pr800781d ER - TY - JOUR A1 - Vanessa Dehennaut A1 - Marie-Christine Slomianny A1 - Adeline Page A1 - Anne-Sophie Vercoutter-Edouart A1 - Catherine Jessus A1 - Jean-Claude Michalski A1 - Jean-Pierre Vilain A1 - Jean-Francois Bodart A1 - Tony Lefebvre T1 - Identification of Structural and Functional O-Linked N-Acetylglucosamine-bearing Proteins in Xenopus laevis Oocyte JO - Mol Cell Proteomics Y1 - 2008 SP - 2229 EP - 2245 VL - 7 IS - 11 UR - http://www.mcponline.org/cgi/content/abstract/7/11/2229?etoc ER - TY - JOUR A1 - Yao HP A1 - Xiang XW A1 - Chen L A1 - Guo AQ A1 - He FQ A1 - Lan LP A1 - Lu XM A1 - Wu XF T1 - Identification of the proteome of the midgut of silkworm, Bombyx mori L. by multidimensional liquid chromatography LTQ-Orbitrap mass spectrometry JO - Biosci Rep Y1 - 2008/11/14 SP - EP - VL - IS - UR - http://dx.doi.org/10.1042/BSR20080144 ER - TY - JOUR A1 - Navratil V A1 - de Chassey B A1 - Meyniel L A1 - Delmotte S A1 - Gautier C A1 - Andre P A1 - Lotteau V A1 - Rabourdin-Combe C T1 - VirHostNet: a knowledge base for the management and the analysis of virus-host interaction networks JO - Nucleic Acids Res Y1 - 2008 Nov 4 SP - EP - VL - IS - UR - http://dx.doi.org/10.1093/nar/gkn794 ER - TY - JOUR A1 - Sitaraman K A1 - Chatterjee DK T1 - High-throughput protein expression using cell-free system JO - Methods Mol Biol Y1 - 2009 SP - 229 EP - 44 VL - 498 IS - UR - http://dx.doi.org/10.1007/978-1-59745-196-3_15 ER - TY - JOUR A1 - Gu F A1 - Wen Y A1 - Fan H A1 - Hu J A1 - Hu Y A1 - Zhao Z T1 - Translational responses of NR2B overexpression in the cerebral cortex of transgenic mice: A liquid chromatography-based proteomic approach JO - Brain Res Y1 - 2008/10/30 SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.brainres.2008.10.039 ER - TY - JOUR A1 - Helen Kim A1 - Mark B. Cope A1 - Richie Herring A1 - Gloria Robinson A1 - Landon Wilson A1 - Grier P. Page A1 - Stephen Barnes T1 - 2D Difference Gel Electrophoresis of Prepubertal and Pubertal Rat Mammary Gland Proteomes JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2008 SP - 4638 EP - 4650 VL - 7 IS - 11 UR - http://dx.doi.org/10.1021/pr800121b ER - TY - JOUR A1 - Ying Ding A1 - Hyungwon Choi A1 - Alexey I. Nesvizhskii T1 - Adaptive Discriminant Function Analysis and Reranking of MS/MS Database Search Results for Improved Peptide Identification in Shotgun Proteomics JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2008 SP - 4878 EP - 4889 VL - 7 IS - 11 UR - http://dx.doi.org/10.1021/pr800484x ER - TY - JOUR A1 - John Wiley & Sons A1 - Ltd T1 - Current literature in mass spectrometry JO - Journal of Mass Spectrometry Y1 - 2008 SP - 1711 EP - 1720 VL - 43 IS - 12 UR - http://dx.doi.org/10.1002/jms.1309 ER - TY - JOUR A1 - Jiusheng Yan A1 - Jesper V. Olsen A1 - Kang-Sik Park A1 - Weiyan Li A1 - Wolfgang Bildl A1 - Uwe Schulte A1 - Richard W. Aldrich A1 - Bernd Fakler A1 - James S. Trimmer T1 - Profiling the Phospho-status of the BKCa Channel {alpha} Subunit in Rat Brain Reveals Unexpected Patterns and Complexity JO - Mol Cell Proteomics Y1 - 2008 SP - 2188 EP - 2198 VL - 7 IS - 11 UR - http://www.mcponline.org/cgi/content/abstract/7/11/2188?etoc ER - TY - JOUR A1 - Laura M. López-Sánchez A1 - Fernando J. Corrales A1 - Raúl González A1 - Gustavo Ferrín A1 - Juan R. Muñoz-Castañeda A1 - Isidora Ranchal A1 - Ana B. Hidalgo A1 - Javier Briceño A1 - Pedro López-Cillero A1 - Miguel A. Gómez A1 - Manuel De La Mata A1 - Jordi Muntané A1 - Antonio Rodríguez-Ariza T1 - Alteration of S-nitrosothiol homeostasis and targets for protein S-nitrosation in human hepatocytes JO - PROTEOMICS Y1 - 2008 SP - 4709 EP - 4720 VL - 8 IS - 22 UR - http://dx.doi.org/10.1002/pmic.200700313 ER - TY - JOUR A1 - Denise L. 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Felgner T1 - Profiling humoral immune responses to P. falciparum infection with protein microarrays JO - PROTEOMICS Y1 - 2008 SP - 4680 EP - 4694 VL - 8 IS - 22 UR - http://dx.doi.org/10.1002/pmic.200800194 ER - TY - JOUR A1 - Francesco Botre T1 - Mass spectrometry and illicit drug testing: analytical challenges of the anti-doping laboratories JO - Expert Review of Proteomics Y1 - 2008 SP - 535 EP - 539 VL - 5 IS - 4 UR - http://dx.doi.org/10.1586/14789450.5.4.535 ER - TY - JOUR A1 - Tom Grunert A1 - Martina Marchetti-Deschmann A1 - Ingrid Miller A1 - Mathias Müller A1 - Günter Allmaier T1 - Comparing the applicability of CGE-on-the-chip and SDS-PAGE for fast pre-screening of mouse serum samples prior to proteomics analysis JO - ELECTROPHORESIS Y1 - 2008 SP - 4332 EP - 4340 VL - 29 IS - 21 UR - http://dx.doi.org/10.1002/elps.200800035 ER - TY - JOUR A1 - Sriram Natarajan A1 - Andrew Hatch A1 - David G. Myszka A1 - Bruce K. Gale T1 - Optimal Conditions for Protein Array Deposition Using Continuous Flow JO - ANALYTICAL CHEMISTRY Y1 - 2008 SP - 8561 EP - 8567 VL - 80 IS - 22 UR - http://dx.doi.org/10.1021/ac8014609 ER - TY - JOUR A1 - Maxie Kohler A1 - Klaus Püschel A1 - Dimitri Sakharov A1 - Alexander Tonevitskiy A1 - Wilhelm Schänzer A1 - Mario Thevis T1 - Detection of recombinant growth hormone in human plasma by a 2-D PAGE method JO - ELECTROPHORESIS Y1 - 2008 SP - 4495 EP - 4502 VL - 29 IS - 22 UR - http://dx.doi.org/10.1002/elps.200800221 ER - TY - JOUR A1 - Gagne JP A1 - Isabelle M A1 - Lo KS A1 - Bourassa S A1 - Hendzel MJ A1 - Dawson VL A1 - Dawson TM A1 - Poirier GG T1 - Proteome-wide identification of poly(ADP-ribose) binding proteins and poly(ADP-ribose)-associated protein complexes JO - Nucleic Acids Res Y1 - 2008 Nov 3 SP - EP - VL - IS - UR - http://dx.doi.org/10.1093/nar/gkn771 ER - TY - JOUR A1 - Liu F A1 - Chen Z A1 - Wang J A1 - Shao X A1 - Cui Z A1 - Yang C A1 - Zhu Z A1 - Xiong D T1 - Overexpression of cell surface cytokeratin 8 in multidrug-resistant MCF-7/MX cells enhances cell adhesion to the extracellular matrix JO - Neoplasia Y1 - 2008 SP - 1275 EP - 84 VL - 10 IS - 11 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18953437&dopt=Abstract ER - TY - JOUR A1 - Ziad El Rassi T1 - Emphasis on Proteomics and Related Topics JO - Y1 - SP - EP - VL - IS - UR - http://dx.doi.org/10.1002/elps.200890095 ER - TY - JOUR A1 - Aurélia Battesti A1 - Emmanuelle Bouveret T1 - Improvement of bacterial two-hybrid vectors for detection of fusion proteins and transfer to pBAD-tandem affinity purification, calmodulin binding peptide, or 6-histidine tag vectors JO - PROTEOMICS Y1 - 2008 SP - 4768 EP - 4771 VL - 8 IS - 22 UR - http://dx.doi.org/10.1002/pmic.200800270 ER - TY - JOUR T1 - PROTEOMICS - Clinical Applications Acknowledgements JO - PROTEOMICS - CLINICAL APPLICATIONS Y1 - 2008 SP - 1675 EP - 1676 VL - 2 IS - 12 UR - http://dx.doi.org/10.1002/prca.200890035 ER - TY - JOUR A1 - Lucia De Franceschi A1 - Andrea Biondani A1 - Franco Carta A1 - Franco Turrini A1 - Carlo Laudanna A1 - Renzo Deana A1 - Anna Maria Brunati A1 - Loris Turretta A1 - Achille Iolascon A1 - Silverio Perrotta A1 - Ari Elson A1 - Cristina Bulato A1 - Carlo Brugnara T1 - PTP? has a critical role in signaling transduction pathways and phosphoprotein network topology in red cells JO - PROTEOMICS Y1 - 2008 SP - 4695 EP - 4708 VL - 8 IS - 22 UR - http://dx.doi.org/10.1002/pmic.200700596 ER - TY - JOUR A1 - Alam SI A1 - Bansod S A1 - Singh L T1 - Immunization against Clostridium perfringens cells elicits protection against Clostridium tetani in mouse model: identification of cross-reactive proteins using proteomic methodologies JO - Y1 - SP - EP - VL - IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19000325&dopt=Abstract ER - TY - JOUR A1 - Alves G A1 - Ogurtsov AY A1 - Yu YK T1 - RAId_DbS: mass-spectrometry based peptide identification web server with knowledge integration JO - Y1 - SP - EP - VL - IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18954448&dopt=Abstract ER - TY - JOUR A1 - Luciano-Montalvo C A1 - Ciborowski P A1 - Duan F A1 - Gendelman HE A1 - Meléndez LM T1 - Proteomic Analyses Associate Cystatin B with Restricted HIV-1 Replication in Placental Macrophages JO - Placenta Y1 - 2008 SP - 1016 EP - 23 VL - 29 IS - 12 UR - http://dx.doi.org/10.1016/j.placenta.2008.09.005 ER - TY - JOUR A1 - Aleksey V. Tolmachev A1 - Matthew E. Monroe A1 - Samuel O. Purvine A1 - Ronald J. Moore A1 - Navdeep Jaitly A1 - Joshua N. Adkins A1 - Gordon A. Anderson A1 - Richard D. Smith T1 - Characterization of Strategies for Obtaining Confident Identifications in Bottom-Up Proteomics Measurements Using Hybrid FTMS Instruments JO - ANALYTICAL CHEMISTRY Y1 - 2008 SP - 8514 EP - 8525 VL - 80 IS - 22 UR - http://dx.doi.org/10.1021/ac801376g ER - TY - JOUR A1 - Scott E. Warder A1 - Lora A. Tucker A1 - Shaun M. McLoughlin A1 - Tamara J. Strelitzer A1 - Joseph L. Meuth A1 - Qian Zhang A1 - George S. Sheppard A1 - Paul L. Richardson A1 - Rick Lesniewski A1 - Steven K. Davidsen A1 - Randy L. Bell A1 - John C. Rogers A1 - Jieyi Wang T1 - Discovery, Identification, and Characterization of Candidate Pharmacodynamic Markers of Methionine Aminopeptidase-2 Inhibition JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2008 SP - 4807 EP - 4820 VL - 7 IS - 11 UR - http://dx.doi.org/10.1021/pr800388p ER - TY - JOUR A1 - Guoan Zhang A1 - David Fenyö A1 - Thomas A. Neubert T1 - Screening for EphB Signaling Effectors Using SILAC with a Linear Ion Trap-Orbitrap Mass Spectrometer JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2008 SP - 4715 EP - 4726 VL - 7 IS - 11 UR - http://dx.doi.org/10.1021/pr800255a ER - TY - JOUR A1 - Finnie C A1 - Bagge M A1 - Steenholdt T A1 - Ostergaard O A1 - Bak-Jensen KS A1 - Backes G A1 - Jensen A A1 - Giese H A1 - Larsen J A1 - Roepstorff P A1 - Svensson B T1 - Integration of the barley genetic and seed proteome maps for chromosome 1H, 2H, 3H, 5H and 7H JO - Funct Integr Genomics Y1 - 2008/11/14 SP - EP - VL - IS - UR - http://dx.doi.org/10.1007/s10142-008-0101-z ER - TY - JOUR A1 - Mónica Martínez-Fernández A1 - Ana M. Rodríguez-Piñeiro A1 - Eliandre Oliveira A1 - María Páez de la Cadena A1 - Emilio Rolán-Alvarez T1 - Proteomic Comparison between Two Marine Snail Ecotypes Reveals Details about the Biochemistry of Adaptation JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2008 SP - 4926 EP - 4934 VL - 7 IS - 11 UR - http://dx.doi.org/10.1021/pr700863e ER - TY - JOUR A1 - Kumari S A1 - Kumar A A1 - Samant M A1 - Singh N A1 - Dube A T1 - Discovery of novel vaccine candidates and drug targets against visceral leishmaniasis using proteomics and transcriptomics JO - Curr Drug Targets Y1 - 2008 SP - 938 EP - 47 VL - 9 IS - 11 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18991606&dopt=Abstract ER - TY - JOUR A1 - Frédérique Baruthio A1 - Manfredo Quadroni A1 - Curzio Rüegg A1 - Agnese Mariotti T1 - Proteomic analysis of membrane rafts of melanoma cells identifies protein patterns characteristic of the tumor progression stage JO - PROTEOMICS Y1 - 2008 SP - 4733 EP - 4747 VL - 8 IS - 22 UR - http://dx.doi.org/10.1002/pmic.200800169 ER - TY - JOUR A1 - Vallejo-Cordoba B A1 - Gonzalez-Cordova AF A1 - Olguin-Arredondo HA T1 - Application of proteomics to the characterization of beta-lactoglobulin variants by capillary electrophoresis-mass spectrometry and nano-liquid chromatography-mass spectrometry-mass spectrometry JO - J Capill Electrophor Microchip Technol Y1 - 2008 SP - 87 EP - 92 VL - 10 IS - 5-6 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18982908&dopt=Abstract ER - TY - JOUR A1 - Franck Bazile A1 - Jean-Philippe Gagné A1 - Geneviève Mercier A1 - Ken Sin Lo A1 - Aude Pascal A1 - Julian Vasilescu A1 - Daniel Figeys A1 - Guy G. Poirier A1 - Jacek Z. Kubiak A1 - Franck Chesnel T1 - Differential Proteomic Screen To Evidence Proteins Ubiquitinated upon Mitotic Exit in Cell-Free Extract of Xenopus laevis Embryos JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2008 SP - 4701 EP - 4714 VL - 7 IS - 11 UR - http://dx.doi.org/10.1021/pr800250x ER - TY - JOUR A1 - Sun B A1 - Zhang S A1 - Zhang D A1 - Li Y A1 - Zhao X A1 - Luo Y A1 - Guo Y T1 - Identification of metastasis-related proteins and their clinical triple-negative human breast cancer JO - Clin Cancer Res Y1 - 2008 SP - 7050 EP - 9 VL - 14 IS - 21 UR - http://dx.doi.org/10.1158/1078-0432.CCR-08-0520 ER - TY - JOUR A1 - Corey E. Bakalarski A1 - Joshua E. Elias A1 - Judit Villén A1 - Wilhelm Haas A1 - Scott A. Gerber A1 - Patrick A. Everley A1 - Steven P. Gygi T1 - The Impact of Peptide Abundance and Dynamic Range on Stable-Isotope-Based Quantitative Proteomic Analyses JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2008 SP - 4756 EP - 4765 VL - 7 IS - 11 UR - http://dx.doi.org/10.1021/pr800333e ER - TY - JOUR A1 - Koehn J A1 - Hunt I T1 - High-Throughput Protein Production (HTPP): A Review of Enabling Expedite Protein Production JO - Methods Mol Biol Y1 - 2009 SP - 1 EP - 18 VL - 498 IS - UR - http://dx.doi.org/10.1007/978-1-59745-196-3_1 ER - TY - JOUR A1 - Quanhu Sheng A1 - Yehia Mechref A1 - Yixue Li A1 - Milos V. Novotny A1 - Haixu Tang T1 - A computational approach to characterizing bond linkages of glycan isomers using matrix-assisted laser desorption/ionization tandem time-of-flight mass spectrometry JO - Rapid Communications in Mass Spectrometry Y1 - 2008 SP - 3561 EP - 3569 VL - 22 IS - 22 UR - http://dx.doi.org/10.1002/rcm.3765 ER - TY - JOUR A1 - Lubke T A1 - Lobel P A1 - Sleat DE T1 - Proteomics of the lysosome JO - Biochim Biophys Acta Y1 - 2008 Oct 15 SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.bbamcr.2008.09.018 ER - TY - JOUR A1 - Janet S. Rader A1 - James P. Malone A1 - Julia Gross A1 - Petra Gilmore A1 - Rebecca A. Brooks A1 - Loan Nguyen A1 - Dan L. Crimmins A1 - Sheng Feng A1 - Jason D. Wright A1 - Nicholas Taylor A1 - Israel Zighelboim A1 - Margo C. Funk A1 - Phyllis C. Huettner A1 - Jack H. Ladenson A1 - David Gius A1 - R. Reid Townse T1 - A unified sample preparation protocol for proteomic and genomic profiling of cervical swabs to identify biomarkers for cervical cancer screening JO - PROTEOMICS - CLINICAL APPLICATIONS Y1 - 2008 SP - 1658 EP - 1669 VL - 2 IS - 12 UR - http://dx.doi.org/10.1002/prca.200780146 ER - TY - JOUR A1 - Stefan Gander A1 - Debora Bonenfant A1 - Patrick Altermatt A1 - Dietmar E. Martin A1 - Simon Hauri A1 - Suzette Moes A1 - Michael N. Hall A1 - Paul Jenoe T1 - Identification of the rapamycin-sensitive phosphorylation sites within the Ser/Thr-rich domain of the yeast Npr1 protein kinase JO - Rapid Communications in Mass Spectrometry Y1 - 2008 SP - 3743 EP - 3753 VL - 22 IS - 23 UR - http://dx.doi.org/10.1002/rcm.3790 ER - TY - JOUR A1 - Kourosh Zolghadr A1 - Oliver Mortusewicz A1 - Ulrich Rothbauer A1 - Regina Kleinhans A1 - Heike Goehler A1 - Erich E. Wanker A1 - M. Cristina Cardoso A1 - Heinrich Leonhardt T1 - A Fluorescent Two-hybrid Assay for Direct Visualization of Protein Interactions in Living Cells JO - Mol Cell Proteomics Y1 - 2008 SP - 2279 EP - 2287 VL - 7 IS - 11 UR - http://www.mcponline.org/cgi/content/abstract/7/11/2279?etoc ER - TY - JOUR A1 - Mamone G A1 - D'Auria S T1 - Is asparagine deamidation in the porcine odorant-binding protein related to the odor molecules binding? 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C. Harsha A1 - Mads Grønborg A1 - Anirban Maitra A1 - Akhilesh Pandey T1 - Differential Membrane Proteomics Using 18O-Labeling To Identify Biomarkers for Cholangiocarcinoma JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2008 SP - 4670 EP - 4677 VL - 7 IS - 11 UR - http://dx.doi.org/10.1021/pr800215n ER - TY - JOUR A1 - Khalid Belhajjame A1 - Andrew R. Jones A1 - Norman W. Paton T1 - A toolkit for capturing and sharing FuGE experiments JO - Bioinformatics Y1 - 2008 SP - 2647 EP - 2649 VL - 24 IS - 22 UR - http://dx.doi.org/10.1093/bioinformatics/btn496 ER - TY - JOUR A1 - Zoran Sosic A1 - Damian Houde A1 - Andy Blum A1 - Tyler Carlage A1 - Yelena Lyubarskaya T1 - Application of imaging capillary IEF for characterization and quantitative analysis of recombinant protein charge heterogeneity JO - ELECTROPHORESIS Y1 - 2008 SP - 4368 EP - 4376 VL - 29 IS - 21 UR - http://dx.doi.org/10.1002/elps.200800157 ER - TY - JOUR A1 - Gloria Esteso A1 - María Isabel Mora A1 - Juan José Garrido A1 - Fernando Corrales and Ãngela Moreno T1 - Proteomic analysis of the porcine platelet proteome and alterations induced by thrombin activation JO - Journal of Proteomics Y1 - 2008 SP - 547 EP - 560 VL - 71 IS - 5 UR - http://www.sciencedirect.com/science?_ob=GatewayURL&_method=citationSearch&_urlVersion=4&_origin=SDVIALERTASCII&_version=1&_uoikey=B8JDC-4TCYCMP-2&md5=b4570ab4019976a5e968cc3e9f6264bf ER - TY - JOUR A1 - Christopher Lausted A1 - Zhiyuan Hu A1 - Leroy Hood T1 - Quantitative Serum Proteomics from Surface Plasmon Resonance Imaging JO - Mol Cell Proteomics Y1 - 2008 SP - 2464 EP - 2474 VL - 7 IS - 12 UR - http://www.mcponline.org/cgi/content/abstract/7/12/2464?etoc ER - TY - JOUR A1 - Maraziotis IA A1 - Dimitrakopoulou K A1 - Bezerianos A T1 - An in silico method for detecting overlapping functional modules from biological networks JO - Y1 - SP - EP - VL - IS - UR - http://dx.doi.org/10.1186/1752-0509-2-93 ER - TY - JOUR A1 - Nan Y A1 - Yang S A1 - Tian Y A1 - Zhang W A1 - Zhou B A1 - Bu L A1 - Huo S T1 - Analysis of the expression protein profiles of lung squamous carcinoma shot-gun proteomics strategy JO - Med Oncol Y1 - 2008 Nov 6 SP - EP - VL - IS - UR - http://dx.doi.org/10.1007/s12032-008-9109-4 ER - TY - JOUR A1 - Zougman A A1 - Ziółkowski P A1 - Mann M A1 - WiÅ›niewski JR T1 - Evidence for Insertional RNA Editing in Humans JO - Curr Biol Y1 - 2008 SP - 1760 EP - 5 VL - 18 IS - 22 UR - http://dx.doi.org/10.1016/j.cub.2008.09.059 ER - TY - JOUR A1 - Medicharla V. 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Wright T1 - The Proteomic Response of Saccharomyces cerevisiae in Very High Glucose Conditions with Amino Acid Supplementation JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2008 SP - 4766 EP - 4774 VL - 7 IS - 11 UR - http://dx.doi.org/10.1021/pr800331s ER - TY - JOUR A1 - Florence Roux-Dalvai A1 - Anne Gonzalez de Peredo A1 - Carolina Simo A1 - Luc Guerrier A1 - David Bouyssie A1 - Alberto Zanella A1 - Attilio Citterio A1 - Odile Burlet-Schiltz A1 - Egisto Boschetti A1 - Pier Giorgio Righetti A1 - Bernard Monsarrat T1 - Extensive Analysis of the Cytoplasmic Proteome of Human Erythrocytes Using the Peptide Ligand Library Technology and Advanced Mass Spectrometry JO - Mol Cell Proteomics Y1 - 2008 SP - 2254 EP - 2269 VL - 7 IS - 11 UR - http://www.mcponline.org/cgi/content/abstract/7/11/2254?etoc ER - TY - JOUR A1 - Wei-Tao Cong A1 - Sun-Young Hwang A1 - Li-Tai Jin A1 - Jung-Kap Choi T1 - Improved conditions for fluorescent staining of proteins with 4,4?-dianilino-1,1?-binaphthyl-5,5?-disulfonic acid in SDS-PAGE JO - ELECTROPHORESIS Y1 - 2008 SP - 4487 EP - 4494 VL - 29 IS - 22 UR - http://dx.doi.org/10.1002/elps.200800124 ER - TY - JOUR A1 - Nawarak J A1 - Huang-Liu R A1 - Kao SH A1 - Liao HH A1 - Sinchaikul S A1 - Chen ST A1 - Cheng SL T1 - Proteomics analysis of A375 human malignant melanoma cells in response to arbutin treatment JO - Biochim Biophys Acta Y1 - 2008/10/18 SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.bbapap.2008.09.023 ER - TY - JOUR A1 - Croning MD A1 - Marshall MC A1 - McLaren P A1 - Armstrong JD A1 - Grant SG T1 - G2Cdb: the Genes to Cognition database JO - Nucleic Acids Res Y1 - 2008 Nov 4 SP - EP - VL - IS - UR - http://dx.doi.org/10.1093/nar/gkn700 ER - TY - JOUR A1 - Diana R. Arnett A1 - Jennifer L. Jennings A1 - David L. Tabb A1 - Andrew J. Link A1 - P. Anthony Weil T1 - A Proteomics Analysis of Yeast Mot1p Protein-Protein Associations: Insights into Mechanism JO - Mol Cell Proteomics Y1 - 2008 SP - 2090 EP - 2106 VL - 7 IS - 11 UR - http://www.mcponline.org/cgi/content/abstract/7/11/2090?etoc ER - TY - JOUR A1 - Melinda A. McFarland A1 - Christopher E. Ellis A1 - Sanford P. Markey A1 - Robert L. Nussbaum T1 - Proteomics Analysis Identifies Phosphorylation-dependent {alpha}-Synuclein Protein Interactions JO - Mol Cell Proteomics Y1 - 2008 SP - 2123 EP - 2137 VL - 7 IS - 11 UR - http://www.mcponline.org/cgi/content/abstract/7/11/2123?etoc ER - TY - JOUR A1 - Miriam Beneito-Cambra A1 - José Manuel Herrero-Martínez A1 - Ernesto F. Simó-Alfonso A1 - Guillermo Ramis-Ramos T1 - Rapid classification of enzymes in cleaning products by hydrolysis, mass spectrometry and linear discriminant analysis JO - Rapid Communications in Mass Spectrometry Y1 - 2008 SP - 3667 EP - 3672 VL - 22 IS - 22 UR - http://dx.doi.org/10.1002/rcm.3778 ER - TY - JOUR A1 - Craig E. Jones A1 - Julian Schwerdt A1 - Tessa Arwen Bretag A1 - Ute Baumann A1 - Alfred L. Brown T1 - GOSLING: a rule-based protein annotator using BLAST and GO JO - Bioinformatics Y1 - 2008 SP - 2628 EP - 2629 VL - 24 IS - 22 UR - http://dx.doi.org/10.1093/bioinformatics/btn486 ER - TY - JOUR A1 - Vissers JP A1 - Pons S A1 - Hulin A A1 - Tissier R A1 - Berdeaux A A1 - Connolly JB A1 - Langridge JI A1 - Geromanos SJ A1 - Ghaleh B T1 - The use of proteome similarity for the qualitative and quantitative profiling of reperfused myocardium JO - J Chromatogr B Analyt Technol Biomed Life Sci Y1 - 2008/11/1 SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.jchromb.2008.10.024 ER - TY - JOUR A1 - Sandoz G A1 - Lesage F T1 - Protein complex analysis of native brain potassium channels by proteomics JO - Methods Mol Biol Y1 - 2009 SP - 113 EP - 23 VL - 491 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=18998088&dopt=Abstract ER - TY - JOUR A1 - Sheng Wang A1 - Ting Liu A1 - Luyan Zhang A1 - Gang Chen T1 - Efficient Chymotryptic Proteolysis Enhanced by Infrared Radiation for Peptide Mapping JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2008 SP - 5049 EP - 5054 VL - 7 IS - 11 UR - http://dx.doi.org/10.1021/pr800476s ER - TY - JOUR A1 - Cheng HJ A1 - Lin CF A1 - Lei HY A1 - Liu HS A1 - Yeh TM A1 - Luo YH A1 - Lin YS T1 - Proteomic Analysis of Endothelial Cell Autoantigens Recognized by Anti-Dengue Virus Nonstructural Protein 1 Antibodies JO - Exp Biol Med (Maywood) Y1 - 2008/11/7 SP - EP - VL - IS - UR - http://dx.doi.org/10.3181/0805-RM-147 ER - TY - JOUR A1 - Marika V. Muetzelburg A1 - Ralf Hoffmann T1 - Separation of multiphosphorylated peptide isomers by CZE JO - ELECTROPHORESIS Y1 - 2008 SP - 4381 EP - 4385 VL - 29 IS - 21 UR - http://dx.doi.org/10.1002/elps.200800089 ER - TY - JOUR A1 - Michael Heymann A1 - David Paramelle A1 - Gilles Subra A1 - Eric Forest A1 - Jean Martinez A1 - Christophe Geourjon A1 - Gilbert Deleage T1 - MSX-3D: a tool to validate 3D protein models using mass spectrometry JO - Bioinformatics Y1 - 2008 SP - 2782 EP - 2783 VL - 24 IS - 23 UR - http://dx.doi.org/10.1093/bioinformatics/btn510 ER - TY - JOUR A1 - Nagano I A1 - Wu Z A1 - Takahashi Y T1 - Functional genes and proteins of Trichinella spp JO - Parasitol Res Y1 - 2008 Nov 6 SP - EP - VL - IS - UR - http://dx.doi.org/10.1007/s00436-008-1248-1 ER - TY - JOUR A1 - Sheila J. Barton A1 - John C. Whittaker T1 - Review of factors that influence the abundance of ions produced in a tandem mass spectrometer and statistical methods for discovering these factors JO - Mass Spectrometry Reviews Y1 - 2009 SP - 177 EP - 187 VL - 28 IS - 1 UR - http://dx.doi.org/10.1002/mas.20188 ER - TY - JOUR A1 - Cao B A1 - Loh KC T1 - Catabolic pathways and cellular responses of Pseudomonas putida P8 on benzoate with a proteomics approach JO - Biotechnol Bioeng Y1 - 2008 SP - 1297 EP - 312 VL - 101 IS - 6 UR - http://dx.doi.org/10.1002/bit.21997 ER - TY - JOUR A1 - Rondepierre F A1 - Bouchon B A1 - Papon J A1 - Bonnet-Duquennoy M A1 - Kintossou R A1 - Moins N A1 - Maublant J A1 - Madelmont JC A1 - D'Incan M A1 - Degoul F T1 - Proteomic studies of B16 lines: Involvement of Annexin A1 in melanoma dissemination JO - Biochim Biophys Acta Y1 - 2009 SP - 61 EP - 9 VL - 1794 IS - 1 UR - http://dx.doi.org/10.1016/j.bbapap.2008.09.014 ER - TY - JOUR T1 - In this issue: Proteomics 22/2008 JO - Y1 - SP - EP - VL - IS - UR - http://dx.doi.org/10.1002/pmic.200890084 ER - TY - JOUR A1 - Åsa K. 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JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2008 SP - 4611 EP - 4611 VL - 7 IS - 11 UR - http://dx.doi.org/10.1021/pr800564u ER - TY - JOUR A1 - Tiannan Guo A1 - Chee Sian Gan A1 - Huoming Zhang A1 - Yi Zhu A1 - Oi Lian Kon A1 - Siu Kwan Sze T1 - Hybridization of Pulsed-Q Dissociation and Collision-Activated Dissociation in Linear Ion Trap Mass Spectrometer for iTRAQ Quantitation JO - JOURNAL OF PROTEOME RESEARCH Y1 - 2008 SP - 4831 EP - 4840 VL - 7 IS - 11 UR - http://dx.doi.org/10.1021/pr800403z ER - TY - JOUR A1 - Mazzeo MF A1 - Giulio BD A1 - Guerriero G A1 - Ciarcia G A1 - Malorni A A1 - Russo GL A1 - Siciliano RA T1 - Fish Authentication by MALDI-TOF Mass Spectrometry JO - J Agric Food Chem Y1 - 2008/11/14 SP - EP - VL - IS - UR - http://dx.doi.org/10.1021/jf8021783 ER - TY - JOUR A1 - Estes SJ A1 - Ye B A1 - Qiu W A1 - Cramer D A1 - Hornstein MD A1 - Missmer SA T1 - A proteomic analysis of IVF follicular fluid in women