TY - JOUR A1 - Zaragozá R A1 - Torres L A1 - García C A1 - Eroles P A1 - Corrales F A1 - Bosch A A1 - Lluch A A1 - García-Trevijano ER A1 - Viña JR T1 - Nitration of cathepsin D enhances its proteolytic activity during mammary gland remodeling after lactation JO - Biochem J Y1 - 2009/01/6 SP - EP - VL - IS - UR - http://dx.doi.org/10.1042/BJ20081746 ER - TY - JOUR A1 - Liang A1 - Xiquan; Hajivandi A1 - Mahbod; Predki A1 - Paul; Pope A1 - Marshall R T1 - Quantitative Proteomics in the Study of Phosphotyrosine-Mediated Signal Transduction Pathway JO - Current Proteomics Y1 - 2008 SP - 146 EP - 156 VL - 5 IS - 3 UR - http://www.ingentaconnect.com/content/ben/cp/2008/00000005/00000003/art00001 ER - TY - JOUR A1 - Compartmentalized Activation of the Proteasome and of Proteasome-mediated T1 - Quantitative Proteomics Analysis of Macrophage Rafts Reveals JO - Mol Cell Proteomics Y1 - 2009 SP - 201 EP - 213 VL - 8 IS - 1 UR - http://www.mcponline.org/cgi/content/abstract/8/1/201?etoc ER - TY - JOUR A1 - Xiaozhe Zhang A1 - Alexander Rauch A1 - Hongbin Xiao A1 - Gregor Rainer A1 - Nikos K Logothetis T1 - Mass spectrometry-based neurochemical analysis: perspectives for primate research JO - Expert Review of Proteomics Y1 - 2008 SP - 641 EP - 652 VL - 5 IS - 5 UR - http://dx.doi.org/10.1586/14789450.5.5.641 ER - TY - JOUR A1 - Facilitates the Targeted Analysis of Post-translational Modifications T1 - Strong Cation Exchange-based Fractionation of Lys-N-generated Peptides JO - Mol Cell Proteomics Y1 - 2009 SP - 190 EP - 200 VL - 8 IS - 1 UR - http://www.mcponline.org/cgi/content/abstract/8/1/190?etoc ER - TY - JOUR A1 - Stephane Roche A1 - Bruno Delorme A1 - Robert A. 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Papadaki A1 - Beatrice Cousin A1 - Carole Crozet A1 - Ollivier Milhavet A1 - Louis Casteilla A1 - Jacques Hatzfeld A1 - Christian Jorgensen A1 - Pierre Charbo T1 - Comparative proteomic analysis of human mesenchymal and embryonic stem cells: Towards the definition of a mesenchymal stem cell proteomic signature JO - PROTEOMICS Y1 - 2009 SP - 223 EP - 232 VL - 9 IS - 2 UR - http://dx.doi.org/10.1002/pmic.200800035 ER - TY - JOUR A1 - Amoresano A A1 - Chiappetta G A1 - Pucci P A1 - Marino G T1 - A rapid and selective mass spectrometric method for the identification of nitrated proteins JO - Methods Mol Biol Y1 - 2008 SP - 15 EP - 29 VL - 477 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19082935&dopt=Abstract ER - TY - JOUR A1 - Dashper SG A1 - Ang CS A1 - Veith PD A1 - Mitchell HL A1 - Lo AW A1 - Seers CA A1 - Walsh KA A1 - Slakeski N A1 - Chen D A1 - Lissel JP A1 - Butler CA A1 - O'Brien-Simpson NM A1 - Barr IG A1 - Reynolds EC T1 - The response of Porphyromonas gingivalis to heme limitation in continuous culture JO - J Bacteriol Y1 - 2009 SP - 1044 EP - 55 VL - 191 IS - 3 UR - http://dx.doi.org/10.1128/JB.01270-08 ER - TY - JOUR A1 - Simpson KL A1 - Whetton AD A1 - Dive C T1 - Quantitative mass spectrometry-based techniques for clinical use: Biomarker identification and quantification JO - J Chromatogr B Analyt Technol Biomed Life Sci Y1 - 2008/11/18 SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.jchromb.2008.11.023 ER - TY - JOUR A1 - Tian L A1 - Peel GJ A1 - Lei Z A1 - Aziz N A1 - Dai X A1 - He J A1 - Watson B A1 - Zhao PX A1 - Sumner LW A1 - Dixon RA T1 - Transcript and proteomic analysis of developing white lupin (Lupinus albus L.) roots JO - Y1 - SP - EP - VL - IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19123941&dopt=Abstract ER - TY - JOUR A1 - Chen Z A1 - Peng IC A1 - Sun W A1 - Su MI A1 - Hsu PH A1 - Fu Y A1 - Zhu Y A1 - Defea K A1 - Pan S A1 - Tsai MD A1 - Shyy JY T1 - AMP-Activated Protein Kinase Functionally Phosphorylates Endothelial Nitric Oxide Synthase Ser633 JO - Circ Res Y1 - 2009/01/8 SP - EP - VL - IS - UR - http://dx.doi.org/10.1161/CIRCRESAHA.108.187567 ER - TY - JOUR A1 - Xiaoli Chen and Sonja Hess T1 - Adipose proteome analysis: focus on mediators of insulin resistance JO - Expert Review of Proteomics Y1 - 2008 SP - 827 EP - 839 VL - 5 IS - 6 UR - http://dx.doi.org/10.1586/14789450.5.6.827 ER - TY - JOUR A1 - Ke Y A1 - Han G A1 - He H A1 - Li J T1 - Differential regulation of proteins and phosphoproteins in rice under drought stress JO - Biochem Biophys Res Commun Y1 - 2009 SP - 133 EP - 8 VL - 379 IS - 1 UR - http://dx.doi.org/10.1016/j.bbrc.2008.12.067 ER - TY - JOUR A1 - Ho J A1 - Lucy M A1 - Krokhin O A1 - Hayglass K A1 - Pascoe E A1 - Darroch G A1 - Rush D A1 - Nickerson P A1 - Rigatto C A1 - Reslerova M T1 - Mass Spectrometry-Based Proteomic Analysis of Urine in Acute Kidney Injury Following Cardiopulmonary Bypass: A Nested Case-Control Study JO - Am J Kidney Dis Y1 - 2008/12/12 SP - EP - VL - IS - UR - http://dx.doi.org/10.1053/j.ajkd.2008.10.037 ER - TY - JOUR A1 - Senzel L A1 - Gnatenko DV A1 - Bahou WF T1 - Genomic and proteomic applications in diagnosis of platelet disorders and classification JO - Semin Thromb Hemost Y1 - 2008 SP - 532 EP - 8 VL - 34 IS - 6 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19085652&dopt=Abstract ER - TY - JOUR A1 - Jatin G. Burniston T1 - Adaptation of the rat cardiac proteome in response to intensity-controlled endurance exercise JO - PROTEOMICS Y1 - 2009 SP - 106 EP - 115 VL - 9 IS - 1 UR - http://dx.doi.org/10.1002/pmic.200800268 ER - TY - JOUR A1 - Murray J A1 - Capaldi RA T1 - Screening for the metabolic basis of neurodegeneration: developing a focused proteomic approach JO - Ann N Y Acad Sci Y1 - 2008 SP - 348 EP - 57 VL - 1147 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19076456&dopt=Abstract ER - TY - JOUR A1 - Angers S T1 - Proteomic analyses of protein complexes in the wnt pathway JO - Methods Mol Biol Y1 - 2009 SP - 223 EP - 30 VL - 468 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19099258&dopt=Abstract ER - TY - JOUR A1 - Jane A. English A1 - Julie Polden A1 - Aisling A. Robinson T1 - 5th BSPR-EBI Meeting, Proteomics: From Technology to New Biology 8-10 July 2008, Wellcome Trust Conference Centre, Hinxton, Cambridge, UK JO - PROTEOMICS Y1 - 2009 SP - 214 EP - 217 VL - 9 IS - 2 UR - http://dx.doi.org/10.1002/pmic.200800758 ER - TY - JOUR A1 - Craven RJ T1 - PGRMC1: a new biomarker for the estrogen receptor in breast cancer JO - Y1 - SP - EP - VL - IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19090968&dopt=Abstract ER - TY - JOUR A1 - Sun A1 - Xue-Long T1 - Functional Glyco-Affinity Precipitation/Capturing for Enhanced Affinity Proteomics JO - Current Proteomics Y1 - 2008 SP - 202 EP - 210 VL - 5 IS - 3 UR - http://www.ingentaconnect.com/content/ben/cp/2008/00000005/00000003/art00007 ER - TY - JOUR A1 - Metpally RP A1 - Reddy BV T1 - Comparative proteome analysis of psychrophilic versus mesophilic bacterial species: Insights into the molecular basis of cold adaptation of proteins JO - Y1 - SP - EP - VL - IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19133128&dopt=Abstract ER - TY - JOUR A1 - Rodriguez-Ortega MJ A1 - Luque I A1 - Tarradas C A1 - Barcena JA T1 - Overcoming function annotation errors in the Gram-positive pathogen Streptococcus suis by a proteomics-driven approach JO - Y1 - SP - EP - VL - IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19061494&dopt=Abstract ER - TY - JOUR A1 - Cellar NA A1 - Karnoup AS A1 - Albers DR A1 - Langhorst ML A1 - Young SA T1 - Immunodepletion of high abundance proteins coupled on-line with reversed-phase liquid chromatography: A two-dimensional LC sample enrichment and fractionation technique for mammalian proteomics JO - J Chromatogr B Y1 - 2009 SP - 79 EP - 85 VL - 877 IS - 1-2 UR - http://dx.doi.org/10.1016/j.jchromb.2008.11.020 ER - TY - JOUR A1 - Nakanishi A1 - Kazuhiro; Sakiyama A1 - Takaharu; Kumada A1 - Yoichi; Imamura A1 - Koreyoshi; Imanaka A1 - Hiroyuki T1 - Recent Advances in Controlled Immobilization of Proteins onto the Surface of the Solid Substrate and Its Possible Application to Proteomics JO - Current Proteomics Y1 - 2008 SP - 161 EP - 175 VL - 5 IS - 3 UR - http://www.ingentaconnect.com/content/ben/cp/2008/00000005/00000003/art00003 ER - TY - JOUR A1 - Issaq HJ A1 - Chan KC A1 - Blonder J A1 - Ye X A1 - Veenstra TD T1 - Separation, detection and quantitation of peptides by liquid chromatography and capillary electrochromatography JO - J Chromatogr A Y1 - 2008/12/25 SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.chroma.2008.12.052 ER - TY - JOUR A1 - Kantawong F A1 - Burchmore R A1 - Gadegaard N A1 - Oreffo RO A1 - Dalby MJ T1 - Proteomic analysis of human osteoprogenitor response to disordered nanotopography JO - J R Soc Interface Y1 - 2008/12/9 SP - EP - VL - IS - UR - http://dx.doi.org/10.1098/rsif.2008.0447 ER - TY - JOUR A1 - Charvolin D A1 - Perez JB A1 - Rouvière F A1 - Giusti F A1 - Bazzacco P A1 - Abdine A A1 - Rappaport F A1 - Martinez KL A1 - Popot JL T1 - The use of amphipols as universal molecular adapters to immobilize membrane proteins onto solid supports JO - Proc Natl Acad Sci U S A Y1 - 2009 SP - 405 EP - 10 VL - 106 IS - 2 UR - http://dx.doi.org/10.1073/pnas.0807132106 ER - TY - JOUR A1 - Maurizio Bruschi A1 - Stefano Grilli A1 - Giovanni Candiano A1 - Serena Fabbroni A1 - Leopoldo Della Ciana A1 - Andrea Petretto A1 - Laura Santucci A1 - Andrea Urbani A1 - Rosanna Gusmano A1 - Francesco Scolari A1 - Gian Marco Ghiggeri T1 - New iodo-acetamido cyanines for labeling cysteine thiol residues. 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Chung T1 - 2-D DIGE profiling of hepatocellular carcinoma tissues identified isoforms of far upstream binding protein (FUBP) as novel candidates in liver carcinogenesis JO - PROTEOMICS Y1 - 2008 SP - 5086 EP - 5096 VL - 8 IS - 23-24 UR - http://dx.doi.org/10.1002/pmic.200800322 ER - TY - JOUR A1 - Jolle V. F. Coumans A1 - Anne Poljak A1 - Mark J. 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A. Goode A1 - Richard J. Simpson T1 - Stem cell markers: Insights from membrane proteomics? JO - PROTEOMICS Y1 - 2008 SP - 4946 EP - 4957 VL - 8 IS - 23-24 UR - http://dx.doi.org/10.1002/pmic.200800312 ER - TY - JOUR A1 - Nguyen TP A1 - Ho TB T1 - An integrative domain-based approach to predicting protein-protein interactions JO - J Bioinform Comput Biol Y1 - 2008 SP - 1115 EP - 32 VL - 6 IS - 6 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19090020&dopt=Abstract ER - TY - JOUR A1 - Christine Hoogland A1 - Daniel Walther A1 - Patricia M. Palagi A1 - Grard Bouchet A1 - Khaled Mostaguir A1 - Xavier Robin A1 - Ron D. 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Roubelakis A1 - Vasiliki Bitsika A1 - Konstantinos Stravodimos A1 - Kitty Pavlakis A1 - Nicholas P. Anagnou A1 - Jonathan Coleman A1 - Antonia Vlahou T1 - Chromosomal and proteome analysis of a new T24-based cell line model for aggressive bladder cancer JO - PROTEOMICS Y1 - 2009 SP - 287 EP - 298 VL - 9 IS - 2 UR - http://dx.doi.org/10.1002/pmic.200800121 ER - TY - JOUR A1 - Chenggong Zong A1 - Glen W. 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Finley A1 - Jr T1 - Combining multiple positive training sets to generate confidence scores for protein-protein interactions JO - Bioinformatics Y1 - 2009 SP - 105 EP - 111 VL - 25 IS - 1 UR - http://dx.doi.org/10.1093/bioinformatics/btn597 ER - TY - JOUR A1 - Huang KY A1 - Chien KY A1 - Lin YC A1 - Hsu WM A1 - Fong IK A1 - Huang PJ A1 - Yueh YM A1 - Gan RR A1 - Tang P T1 - A proteome reference map of Trichomonas vaginalis JO - Parasitol Res Y1 - 2008/12/5 SP - EP - VL - IS - UR - http://dx.doi.org/10.1007/s00436-008-1274-z ER - TY - JOUR A1 - Baukje de Roos T1 - Proteomic analysis of human plasma and blood cells in nutritional studies: development of biomarkers to aid disease prevention JO - Expert Review of Proteomics Y1 - 2008 SP - 819 EP - 826 VL - 5 IS - 6 UR - http://dx.doi.org/10.1586/14789450.5.6.819 ER - TY - JOUR A1 - Wei A1 - Li-Na T1 - Post-Translational Modification of Orphan Nuclear Receptors TR2 and TR4 - Ligand Independent Activities JO - Current Proteomics Y1 - 2008 SP - 211 EP - 216 VL - 5 IS - 4 UR - http://www.ingentaconnect.com/content/ben/cp/2008/00000005/00000004/art00001 ER - TY - JOUR A1 - Kang JH A1 - Ryu HS A1 - Kim HT A1 - Lee SJ A1 - Choi UK A1 - Park YB A1 - Huh TL A1 - Choi MS A1 - Kang TC A1 - Choi SY A1 - Kwon OS T1 - Proteomic analysis of human macrophages exposed to hypochlorite-oxidized low-density lipoprotein JO - Biochim Biophys Acta Y1 - 2008/12/6 SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.bbapap.2008.11.015 ER - TY - JOUR A1 - Hu ZZ A1 - Huang H A1 - Cheema A A1 - Jung M A1 - Dritschilo A A1 - Wu CH T1 - Integrated Bioinformatics for Radiation-Induced Pathway Analysis from Proteomics and Microarray Data JO - J Proteomics Bioinform Y1 - 2008 SP - 47 EP - 60 VL - 1 IS - 2 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19088860&dopt=Abstract ER - TY - JOUR A1 - Mark W. 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Gibson T1 - KEPE--a motif frequently superimposed on sumoylation sites in metazoan chromatin proteins and transcription factors JO - Bioinformatics Y1 - 2009 SP - 1 EP - 5 VL - 25 IS - 1 UR - http://dx.doi.org/10.1093/bioinformatics/btn594 ER - TY - JOUR A1 - Avirulent Obligate Rust Fungus T1 - Quantitative Proteomic Analysis of Bean Plants Infected by a Virulent and JO - Mol Cell Proteomics Y1 - 2009 SP - 19 EP - 31 VL - 8 IS - 1 UR - http://www.mcponline.org/cgi/content/abstract/8/1/19?etoc ER - TY - JOUR A1 - Diego Omar Serra A1 - Genia Lcking A1 - Florian Weiland A1 - Stefan Schulz A1 - Angelika Grg A1 - Osvaldo Miguel Yantorno A1 - Monika Ehling-Schulz T1 - Proteome approaches combined with Fourier transform infrared spectroscopy revealed a distinctive biofilm physiology in Bordetella pertussis JO - PROTEOMICS Y1 - 2008 SP - 4995 EP - 5010 VL - 8 IS - 23-24 UR - http://dx.doi.org/10.1002/pmic.200800218 ER - TY - JOUR A1 - Herpoel-Gimbert I A1 - Margeot A A1 - Dolla A A1 - Jan G A1 - Molle D A1 - Lignon S A1 - Mathis H A1 - Sigoillot JC A1 - Monot F A1 - Asther M T1 - Comparative secretome analyses of two Trichoderma reesei RUT-C30 and CL847 hypersecretory strains JO - Y1 - SP - EP - VL - IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19105830&dopt=Abstract ER - TY - JOUR A1 - Mandal SM A1 - Ghosh AK A1 - Mandal M T1 - Iron Oxide Nanoparticle Assisted Purification and Mass Spectrometry Based Proteolytic Mapping of Intact CD4(+)T Cells from Human Blood JO - Prep Biochem Biotechnol Y1 - 2009 SP - 20 EP - 31 VL - 39 IS - 1 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19090418&dopt=Abstract ER - TY - JOUR A1 - Farid E Ahmed T1 - Utility of mass spectrometry for proteome analysis: part I. 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Banks T1 - Sample size determination in clinical proteomic profiling experiments using mass spectrometry for class comparison JO - PROTEOMICS Y1 - 2009 SP - 74 EP - 86 VL - 9 IS - 1 UR - http://dx.doi.org/10.1002/pmic.200800417 ER - TY - JOUR A1 - Muetzelburg MV A1 - Hofmann F A1 - Just I A1 - Pich A T1 - Identification of biomarkers indicating cellular changes after treatment of neuronal cells with the C3 exoenzyme from Clostridium botulinum using the iTRAQ protocol and LC-MS/MS analysis JO - J Chromatogr B Analyt Technol Biomed Life Sci Y1 - 2008/12/9 SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.jchromb.2008.12.005 ER - TY - JOUR A1 - Levin Y A1 - Wang L A1 - Ingudomnukul E A1 - Schwarz E A1 - Baron-Cohen S A1 - Palotás A A1 - Bahn S T1 - Real-time evaluation of experimental variation in large-scale LC-MS/MS-based quantitative proteomics of complex samples JO - J Chromatogr B Analyt Technol Biomed Life Sci Y1 - 2008/11/13 SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.jchromb.2008.11.007 ER - TY - JOUR A1 - Gerald W. Becker T1 - Stable isotopic labeling of proteins for quantitative proteomic applications JO - Brief Funct Genomic Proteomic Y1 - 2008 SP - 371 EP - 382 VL - 7 IS - 5 UR - http://dx.doi.org/10.1093/bfgp/eln047 ER - TY - JOUR A1 - Ahmed A1 - Farid E T1 - Application of MALDI/SELDI Mass Spectrometry to Cancer Biomarker Discovery and Validation JO - Current Proteomics Y1 - 2008 SP - 224 EP - 252 VL - 5 IS - 4 UR - http://www.ingentaconnect.com/content/ben/cp/2008/00000005/00000004/art00003 ER - TY - JOUR A1 - Tews D A1 - Lehr S A1 - Hartwig S A1 - Osmers A A1 - Paßlack W A1 - Eckel J T1 - Anti-apoptotic Action of Exendin-4 in INS-1 Beta Cells: Comparative Protein Pattern Analysis of Isolated Mitochondria JO - Horm Metab Res Y1 - 2008/12/15 SP - EP - VL - IS - UR - http://dx.doi.org/10.1055/s-0028-1105911 ER - TY - JOUR A1 - Nimesh Bhaskaran A1 - Kah Wai Lin A1 - Aude Gautier A1 - Hanna Woksepp A1 - Ulf Hellman A1 - Serhiy Souchelnytskyi T1 - Comparative proteome profiling of MCF10A and 184A1 human breast epithelial cells emphasized involvement of CDK4 and cyclin D3 in cell proliferation JO - PROTEOMICS - CLINICAL APPLICATIONS Y1 - 2009 SP - 68 EP - 77 VL - 3 IS - 1 UR - http://dx.doi.org/10.1002/prca.200800045 ER - TY - JOUR A1 - Liu X A1 - Shen J A1 - Zhan R A1 - Wang X A1 - Wang X A1 - Zhang Z A1 - Leng X A1 - Yang Z A1 - Qian L T1 - Proteomic analysis of homocysteine induced proliferation of cultured neonatal rat vascular smooth muscle cells JO - Biochim Biophys Acta Y1 - 2009 SP - 177 EP - 84 VL - 1794 IS - 2 UR - http://dx.doi.org/10.1016/j.bbapap.2008.10.001 ER - TY - JOUR A1 - Spangenberg HC A1 - Thimme R A1 - Blum HE T1 - Advances in prevention and diagnosis of hepatocellular carcinoma JO - Expert Rev Gastroenterol Hepatol Y1 - 2008 SP - 425 EP - 33 VL - 2 IS - 3 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19072390&dopt=Abstract ER - TY - JOUR A1 - Haleem J Issaq and Timothy D Veenstra T1 - Would you prefer multiple reaction monitoring or antibodies with your biomarker validation? JO - Expert Review of Proteomics Y1 - 2008 SP - 761 EP - 763 VL - 5 IS - 6 UR - http://dx.doi.org/10.1586/14789450.5.6.761 ER - TY - JOUR A1 - Rumyana Karlova A1 - Sjef Boeren A1 - Walter van Dongen A1 - Mark Kwaaitaal A1 - Jose Aker A1 - Jacques Vervoort A1 - Sacco de Vries T1 - Identification of in vitro phosphorylation sites in the Arabidopsis thaliana somatic embryogenesis receptor-like kinases JO - PROTEOMICS Y1 - 2009 SP - 368 EP - 379 VL - 9 IS - 2 UR - http://dx.doi.org/10.1002/pmic.200701059 ER - TY - JOUR A1 - Jaime Castillo A1 - Simone Tanzi A1 - Maria Dimaki A1 - Winnie Svendsen T1 - Manipulation of self-assembly amyloid peptide nanotubes by dielectrophoresis JO - ELECTROPHORESIS Y1 - 2008 SP - 5026 EP - 5032 VL - 29 IS - 24 UR - http://dx.doi.org/10.1002/elps.200800260 ER - TY - JOUR A1 - Chen Y A1 - Tang CE A1 - Ouyang GL A1 - Ruan L A1 - Li MY A1 - Zhang PF A1 - Li C A1 - Yi H A1 - Peng F A1 - Li JL A1 - Chen ZC A1 - Xiao ZQ T1 - Identification of RKIP as a differentially tyrosine-phosphorylated protein in nasopharyngeal carcinoma and normal nasopharyngeal epithelial tissues by phosphoproteomic approach JO - Med Oncol Y1 - 2008/12/19 SP - EP - VL - IS - UR - http://dx.doi.org/10.1007/s12032-008-9147-y ER - TY - JOUR A1 - Goodyear PW A1 - Boyd MT A1 - Jenkins R A1 - Hamlett J A1 - Kitteringham N A1 - Jones TM T1 - Proteomic analysis of metastatic laryngeal squamous cell carcinoma JO - Y1 - SP - EP - VL - IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19126163&dopt=Abstract ER - TY - JOUR A1 - Chen T A1 - Wu X A1 - Chen Y A1 - Li X A1 - Huang M A1 - Zheng M A1 - Baluska F A1 - Samaj J A1 - Lin J T1 - Combined proteomic and cytological analysis of Ca2+-calmodulin regulation in Picea meyeri pollen tube growth JO - Plant Physiol Y1 - 2008/11/14 SP - EP - VL - IS - UR - http://dx.doi.org/10.1104/pp.108.127514 ER - TY - JOUR A1 - Ndimba BK A1 - Thomas LA T1 - Proteomics in South Africa: Current status, challenges and prospects JO - Biotechnol J Y1 - 2008 SP - 1368 EP - 1374 VL - 3 IS - 11 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19016510&dopt=Abstract ER - TY - JOUR A1 - Aleksandr Barinov A1 - Valentin Loux A1 - Amal Hammani A1 - Pierre Nicolas A1 - Philippe Langella A1 - Dusko Ehrlich A1 - Emmanuelle Maguin A1 - Maarten van de Guchte T1 - Prediction of surface exposed proteins in Streptococcus pyogenes, with a potential application to other Gram-positive bacteria JO - PROTEOMICS Y1 - 2009 SP - 61 EP - 73 VL - 9 IS - 1 UR - http://dx.doi.org/10.1002/pmic.200800195 ER - TY - JOUR A1 - Xiao F A1 - Chen D A1 - Lu Y A1 - Xiao Z A1 - Guan LF A1 - Yuan J A1 - Wang L A1 - Xi ZQ A1 - Wang XF T1 - Proteomic analysis of cerebrospinal fluid from patients with idiopathic temporal lobe epilepsy JO - Brain Res Y1 - 2008/12/11 SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.brainres.2008.12.008 ER - TY - JOUR A1 - Evans ST A1 - Freed A A1 - Cramer SM T1 - Displacer concentration effects in displacement chromatography Implications for trace solute detection JO - J Chromatogr A Y1 - 2009 SP - 79 EP - 85 VL - 1216 IS - 1 UR - http://dx.doi.org/10.1016/j.chroma.2008.11.040 ER - TY - JOUR A1 - Rivera JG A1 - Choi YS A1 - Vujcic S A1 - Wood TD A1 - Colón LA T1 - Enrichment/isolation of phosphorylated peptides on hafnium oxide prior to mass spectrometric analysis JO - Analyst Y1 - 2009 SP - 31 EP - 3 VL - 134 IS - 1 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19082170&dopt=Abstract ER - TY - JOUR A1 - Michael J. Dunn T1 - PROTEOMICS: Keeping ahead of the field JO - PROTEOMICS Y1 - 2009 SP - 1 EP - 3 VL - 9 IS - 1 UR - http://dx.doi.org/10.1002/pmic.200890093 ER - TY - JOUR A1 - Starosta V A1 - Pazdrak K A1 - Boldogh I A1 - Svider T A1 - Kurosky A T1 - Lipoxin A4 counterregulates GM-CSF signaling in eosinophilic granulocytes JO - J Immunol Y1 - 2008 SP - 8688 EP - 99 VL - 181 IS - 12 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19050289&dopt=Abstract ER - TY - JOUR A1 - Clemetson KJ A1 - Morita T A1 - Manjunatha Kini R T1 - Scientific and standardization committee communications: classification and nomenclature of snake venom C-type lectins and related proteins JO - J Thromb Haemost Y1 - 2008/11/20 SP - EP - VL - IS - UR - http://dx.doi.org/10.1111/j.1538-7836.2008.03233.x ER - TY - JOUR A1 - Ma J A1 - Zhang L A1 - Liang Z A1 - Zhang W A1 - Zhang Y T1 - Recent advances in immobilized enzymatic reactors and their applications in proteome analysis JO - Anal Chim Acta Y1 - 2009 SP - 1 EP - 8 VL - 632 IS - 1 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19100875&dopt=Abstract ER - TY - JOUR A1 - Song A1 - Jun; Braun A1 - Gordon T1 - Application of Proteomic Techniques to Fruits and Vegetables JO - Current Proteomics Y1 - 2008 SP - 191 EP - 201 VL - 5 IS - 3 UR - http://www.ingentaconnect.com/content/ben/cp/2008/00000005/00000003/art00006 ER - TY - JOUR A1 - Pires ES A1 - Khole VV T1 - A block in the road to fertility: autoantibodies to heat-shock protein 90-beta in human ovarian autoimmunity JO - Fertil Steril Y1 - 2008/11/18 SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.fertnstert.2008.08.068 ER - TY - JOUR A1 - Wolfgang A. Herrmann T1 - 65th Birthday of Angelika Grg, Professor, Ph.D. Technische Universitt Mnchen, Center for Life and Food Sciences Weihenstephan, Germany JO - PROTEOMICS Y1 - 2008 SP - 4840 EP - 4841 VL - 8 IS - 23-24 UR - http://dx.doi.org/10.1002/pmic.200890088 ER - TY - JOUR A1 - Wu F A1 - Wang P A1 - Young LC A1 - Lai R A1 - Li L T1 - Proteome-Wide Identification of Novel Binding Partners to the Oncogenic Fusion Gene Protein, NPM-ALK, using Tandem Affinity Purification and Mass Spectrometry JO - Am J Pathol Y1 - 2009 SP - 361 EP - 70 VL - 174 IS - 2 UR - http://dx.doi.org/10.2353/ajpath.2009.080521 ER - TY - JOUR A1 - Toro-Nieves D A1 - Rodriguez Y A1 - Plaud M A1 - Ciborowski P A1 - Duan F A1 - Perez Laspiur J A1 - Wojna V A1 - Melendez L T1 - Proteomic analyses of monocyte-derived macrophages infected with human immunodeficiency virus type 1 primary isolates from Hispanic women with and without cognitive impairment JO - J Neurovirol Y1 - 2008/12/29 SP - EP - VL - IS - UR - http://dx.doi.org/10.1080/13550280802385505 ER - TY - JOUR A1 - Wagner V A1 - Mittag M T1 - Probing Circadian Rhythms in Chlamydomonas rheinhardtii by Functional Proteomics JO - Methods Mol Biol Y1 - 2009 SP - 1 EP - 16 VL - 479 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19083188&dopt=Abstract ER - TY - JOUR A1 - Chromatography-Tandem Mass Spectrometry Proteomics T1 - Plant Defense Responses in Opium Poppy Cell Cultures Revealed by Liquid JO - Mol Cell Proteomics Y1 - 2009 SP - 86 EP - 98 VL - 8 IS - 1 UR - http://www.mcponline.org/cgi/content/abstract/8/1/86?etoc ER - TY - JOUR A1 - Ingrid Miller A1 - Ivano Eberini A1 - Elisabetta Gianazza T1 - Proteomics of lung physiopathology JO - PROTEOMICS Y1 - 2008 SP - 5053 EP - 5073 VL - 8 IS - 23-24 UR - http://dx.doi.org/10.1002/pmic.200800315 ER - TY - JOUR A1 - Dam S A1 - Laursen BS A1 - Ornfelt JH A1 - Jochimsen B A1 - Stærfeldt HH A1 - Friis C A1 - Nielsen K A1 - Goffard N A1 - Besenbacher S A1 - Krusell L A1 - Sato S A1 - Tabata S A1 - Thogersen IB A1 - Enghild JJ A1 - Stougaard J T1 - The proteome of seed development in the model legume Lotus japonicus JO - Plant Physiol Y1 - 2009/01/7 SP - EP - VL - IS - UR - http://dx.doi.org/10.1104/pp.108.133405 ER - TY - JOUR A1 - Seneviratne CJ A1 - Jin L A1 - Samaranayake LP T1 - Biofilm lifestyle of Candida: a mini review JO - Oral Dis Y1 - 2008 SP - 582 EP - 90 VL - 14 IS - 7 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19076549&dopt=Abstract ER - TY - JOUR A1 - Wang J A1 - Wu G A1 - Zhou H A1 - Wang F T1 - Emerging technologies for amino acid nutrition research in the post-genome era JO - Amino Acids Y1 - 2008/11/15 SP - EP - VL - IS - UR - http://dx.doi.org/10.1007/s00726-008-0193-8 ER - TY - JOUR A1 - Vioque-Fernández A A1 - Alves de Almeida E A1 - López-Barea J T1 - Assessment of Doñana National Park contamination in Procambarus clarkii: Integration of conventional biomarkers and proteomic approaches JO - Sci Total Environ Y1 - 2008/12/24 SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.scitotenv.2008.11.051 ER - TY - JOUR A1 - Begona Casado A1 - Paolo Iadarola A1 - Maurizio Luisetti A1 - Martin Kussmann T1 - Proteomics-based diagnosis of chronic obstructive pulmonary disease: the hunt for new markers JO - Expert Review of Proteomics Y1 - 2008 SP - 693 EP - 704 VL - 5 IS - 5 UR - http://dx.doi.org/10.1586/14789450.5.5.693 ER - TY - JOUR A1 - Griffin NM A1 - Schnitzer JE T1 - Chapter 8 Proteomic Mapping of the Vascular Endothelium In Vivo for Vascular Targeting JO - Y1 - SP - EP - VL - IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19022060&dopt=Abstract ER - TY - JOUR A1 - Savijoki K A1 - Alvesalo J A1 - Vuorela P A1 - Leinonen M A1 - Kalkkinen N T1 - Proteomic analysis of Chlamydia pneumoniae-infected HL cells reveals extensive degradation of cytoskeletal proteins JO - FEMS Immunol Med Microbiol Y1 - 2008 SP - 375 EP - 84 VL - 54 IS - 3 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19049650&dopt=Abstract ER - TY - JOUR A1 - Chen Y A1 - Zheng W A1 - Li Y A1 - Zhong J A1 - Ji J A1 - Shen P T1 - Apoptosis induced by methylene-blue-mediated photodynamic therapy in melanomas and the involvement of mitochondrial dysfunction revealed by proteomics JO - Cancer Sci Y1 - 2008 SP - 2019 EP - 2027 VL - 99 IS - 10 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19016762&dopt=Abstract ER - TY - JOUR A1 - Burniston JG A1 - Connolly JB T1 - Characterisation of isoform-specific tryptic peptides of rat cardiac myosin heavy chains using automated liquid chromatography-matrix assisted laser desorption ionisation (LC-MALDI) mass spectrometry JO - Int J Cardiol Y1 - 2008/12/18 SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.ijcard.2008.11.058 ER - TY - JOUR A1 - Jason W. 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McRedmond A1 - Gerard Cagney T1 - Activity profiling of platelets by chemical proteomics JO - PROTEOMICS Y1 - 2009 SP - 40 EP - 50 VL - 9 IS - 1 UR - http://dx.doi.org/10.1002/pmic.200800185 ER - TY - JOUR A1 - Kris Gevaert A1 - Francis Impens A1 - Bart Ghesquire A1 - Petra Van Damme A1 - Anja Lambrechts A1 - Jol Vandekerckhove T1 - Stable isotopic labeling in proteomics JO - PROTEOMICS Y1 - 2008 SP - 4873 EP - 4885 VL - 8 IS - 23-24 UR - http://dx.doi.org/10.1002/pmic.200800421 ER - TY - JOUR A1 - Yazen Jmeian A1 - Ziad El Rassi T1 - Liquid-phase-based separation systems for depletion, prefractionation and enrichment of proteins in biological fluids for in-depth proteomics analysis JO - ELECTROPHORESIS Y1 - 2009 SP - 249 EP - 261 VL - 30 IS - 1 UR - http://dx.doi.org/10.1002/elps.200800639 ER - TY - JOUR A1 - Atiomo W A1 - Khalid S A1 - Parameshweran S A1 - Houda M A1 - Layfield R T1 - Proteomic biomarkers for the diagnosis and risk stratification of polycystic ovary syndrome: a systematic review JO - BJOG Y1 - 2009 SP - 137 EP - 43 VL - 116 IS - 2 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19076945&dopt=Abstract ER - TY - JOUR A1 - Richard S. P. Horler A1 - Andrew Butcher A1 - Nikitas Papangelopoulos A1 - Peter D. Ashton A1 - Gavin H. 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Novotny T1 - Characterization of glycopeptides by combining collision-induced dissociation and electron-transfer dissociation mass spectrometry data JO - Rapid Communications in Mass Spectrometry Y1 - 2009 SP - 161 EP - 170 VL - 23 IS - 1 UR - http://dx.doi.org/10.1002/rcm.3850 ER - TY - JOUR A1 - Tegel H A1 - Steen J A1 - Konrad A A1 - Nikdin H A1 - Pettersson K A1 - Stenvall M A1 - Tourle S A1 - Wrethagen U A1 - Xu L A1 - Yderland L A1 - Uhlén M A1 - Hober S A1 - Ottosson J T1 - High-throughput protein production - Lessons from scaling up from 10 to 288 recombinant proteins per week JO - Biotechnol J Y1 - 2009 SP - 51 EP - 7 VL - 4 IS - 1 UR - http://dx.doi.org/10.1002/biot.200800183 ER - TY - JOUR A1 - Simone Ferrero A1 - David John Gillott A1 - Valentino Remorgida A1 - Nicola Ragni A1 - Pier Luigi Venturini A1 - Jurgis Gedis Grudzinskas T1 - Proteomics technologies in endometriosis JO - Expert Review of Proteomics Y1 - 2008 SP - 705 EP - 714 VL - 5 IS - 5 UR - http://dx.doi.org/10.1586/14789450.5.5.705 ER - TY - JOUR A1 - Extracellular Proteome of the Host Plant A1 - Arabidopsis thaliana T1 - Effector Proteins of the Bacterial Pathogen Pseudomonas syringae Alter the JO - Mol Cell Proteomics Y1 - 2009 SP - 145 EP - 156 VL - 8 IS - 1 UR - http://www.mcponline.org/cgi/content/abstract/8/1/145?etoc ER - TY - JOUR A1 - Boschetti E A1 - Bindschedler LV A1 - Tang C A1 - Fasoli E A1 - Righetti PG T1 - Combinatorial peptide ligand libraries and plant proteomics: A winning strategy at a price JO - J Chromatogr A Y1 - 2008/12/10 SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.chroma.2008.11.098 ER - TY - JOUR A1 - Changyu Shen A1 - Quanhu Sheng A1 - Jie Dai A1 - Yixue Li A1 - Rong Zeng A1 - Haixu Tang T1 - On the estimation of false positives in peptide identifications using decoy search strategy JO - PROTEOMICS Y1 - 2009 SP - 194 EP - 204 VL - 9 IS - 1 UR - http://dx.doi.org/10.1002/pmic.200800330 ER - TY - JOUR A1 - Natasha A. 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Lilley T1 - Investigating sample pooling strategies for DIGE experiments to address biological variability JO - PROTEOMICS Y1 - 2009 SP - 388 EP - 397 VL - 9 IS - 2 UR - http://dx.doi.org/10.1002/pmic.200800485 ER - TY - JOUR A1 - Atsushi Intoh A1 - Akira Kurisaki A1 - Yuko Yamanaka A1 - Hisashi Hirano A1 - Hiroyuki Fukuda A1 - Hiromu Sugino A1 - Makoto Asashima T1 - Proteomic analysis of membrane proteins expressed specifically in pluripotent murine embryonic stem cells JO - PROTEOMICS Y1 - 2009 SP - 126 EP - 137 VL - 9 IS - 1 UR - http://dx.doi.org/10.1002/pmic.200800496 ER - TY - JOUR A1 - Frutos R A1 - Viari A A1 - Vachiéry N A1 - Boyer F A1 - Lefrançois T A1 - Martinez D T1 - Emergence and potential of high-throughput and integrative approaches in pathology JO - Ann N Y Acad Sci Y1 - 2008 SP - 62 EP - 5 VL - 1149 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19120175&dopt=Abstract ER - TY - JOUR A1 - Farinazzo A A1 - Restuccia U A1 - Bachi A A1 - Guerrier L A1 - Fortis F A1 - Boschetti E A1 - Fasoli E A1 - Citterio A A1 - Righetti PG T1 - Chicken egg yolk cytoplasmic proteome, mined via combinatorial peptide ligand libraries JO - J Chromatogr A Y1 - 2008/11/27 SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.chroma.2008.11.051 ER - TY - JOUR A1 - Tress ML A1 - Bodenmiller B A1 - Aebersold R A1 - Valencia A T1 - Proteomics studies confirm the presence of alternative protein isoforms on a large scale JO - Y1 - SP - EP - VL - IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19017398&dopt=Abstract ER - TY - JOUR A1 - Dustin N. 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O'Farrell T1 - The pre-omics era: The early days of two-dimensional gels JO - PROTEOMICS Y1 - 2008 SP - 4842 EP - 4852 VL - 8 IS - 23-24 UR - http://dx.doi.org/10.1002/pmic.200800719 ER - TY - JOUR A1 - Dubey A1 - Vikash K.; Jagannadham A1 - M. 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Schmidt A1 - Sacha Baginsky A1 - Enrico Martinoia T1 - In vivo phosphorylation sites of barley tonoplast proteins identified by a phosphoproteomic approach JO - PROTEOMICS Y1 - 2009 SP - 310 EP - 321 VL - 9 IS - 2 UR - http://dx.doi.org/10.1002/pmic.200800323 ER - TY - JOUR A1 - Stufano A A1 - Kanduc D T1 - Proteome-based epitopic peptide scanning along PSA JO - Exp Mol Pathol Y1 - 2008/12/9 SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.yexmp.2008.11.009 ER - TY - JOUR A1 - Martin Weisel A1 - Ewgenij Proschak A1 - Jan M. Kriegl A1 - Gisbert Schneider T1 - Form follows function: Shape analysis of protein cavities for receptor-based drug design JO - PROTEOMICS Y1 - 2009 SP - 451 EP - 459 VL - 9 IS - 2 UR - http://dx.doi.org/10.1002/pmic.200800092 ER - TY - JOUR A1 - Michael Bourgeois A1 - Franoise Jacquin A1 - Vincent Savois A1 - Nicolas Sommerer A1 - Valrie Labas A1 - Cline Henry A1 - Judith Burstin T1 - Dissecting the proteome of pea mature seeds reveals the phenotypic plasticity of seed protein composition JO - PROTEOMICS Y1 - 2009 SP - 254 EP - 271 VL - 9 IS - 2 UR - http://dx.doi.org/10.1002/pmic.200700903 ER - TY - JOUR A1 - Donaldson JR A1 - Nanduri B A1 - Burgess SC A1 - Lawrence ML T1 - Comparative proteomic analysis of Listeria monocytogenes strains F2365 and EGD JO - Appl Environ Microbiol Y1 - 2009 SP - 366 EP - 73 VL - 75 IS - 2 UR - http://dx.doi.org/10.1128/AEM.01847-08 ER - TY - JOUR A1 - Olivier Langella A1 - Michel Zivy T1 - A method based on bead flows for spot detection on 2-D gel images JO - PROTEOMICS Y1 - 2008 SP - 4914 EP - 4918 VL - 8 IS - 23-24 UR - http://dx.doi.org/10.1002/pmic.200800644 ER - TY - JOUR A1 - Guo B A1 - Chen ZY A1 - Lee RD A1 - Scully BT T1 - Drought Stress and Preharvest Aflatoxin Contamination in Agricultural Commodity: Genetics, Genomics and Proteomics JO - J Integr Plant Biol Y1 - 2008 SP - 1281 EP - 1291 VL - 50 IS - 10 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19017115&dopt=Abstract ER - TY - JOUR A1 - David R. 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Salford A1 - Morten Krogh T1 - Proteomic expression analysis and comparison of protein and mRNA expression profiles in human malignant gliomas JO - PROTEOMICS - CLINICAL APPLICATIONS Y1 - 2009 SP - 83 EP - 94 VL - 3 IS - 1 UR - http://dx.doi.org/10.1002/prca.200800086 ER - TY - JOUR A1 - Pierce CG A1 - Thomas DP A1 - López-Ribot JL T1 - Effect of tunicamycin on Candida albicans biofilm formation and maintenance JO - J Antimicrob Chemother Y1 - 2008/12/20 SP - EP - VL - IS - UR - http://dx.doi.org/10.1093/jac/dkn515 ER - TY - JOUR A1 - Lakhan SE A1 - Kramer A T1 - Schizophrenia genomics and proteomics: are we any closer to biomarker discovery? JO - Y1 - SP - EP - VL - IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19128481&dopt=Abstract ER - TY - JOUR A1 - Mesrobian HG T1 - The value of newborn urinary proteome analysis in the evaluation and management of ureteropelvic junction obstruction: a cost-effectiveness study JO - World J Urol Y1 - 2008/11/26 SP - EP - VL - IS - UR - http://dx.doi.org/10.1007/s00345-008-0355-z ER - TY - JOUR A1 - Iliopoulos D A1 - Malizos KN A1 - Oikonomou P A1 - Tsezou A T1 - Integrative microRNA and proteomic approaches identify novel osteoarthritis genes and their collaborative metabolic and inflammatory networks JO - Y1 - SP - EP - VL - IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19011694&dopt=Abstract ER - TY - JOUR A1 - Ferrer-Alcón M A1 - Arteta D A1 - Guerrero MJ A1 - Fernandez-Orth D A1 - Simón L A1 - Martinez A T1 - The use of gene array technology and proteomics in the search of new targets of diseases for therapeutics JO - Toxicol Lett Y1 - 2008/10/28 SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.toxlet.2008.10.014 ER - TY - JOUR A1 - Diez-Orejas R A1 - Fernández-Arenas E T1 - Candida albicans-macrophage interactions: genomic and proteomic insights JO - Future Microbiol Y1 - 2008 SP - 661 EP - 81 VL - 3 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19072183&dopt=Abstract ER - TY - JOUR A1 - Jinhee Choi A1 - Mi-Hee Ha T1 - Effect of cadmium exposure on the globin protein expression in 4th instar larvae of Chironomus riparius Mg. 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Deelder A1 - Manfred Wuhrer T1 - Immunoglobulin 1 (IgG1) Fc-glycosylation profiling of anti-citrullinated peptide antibodies from human serum JO - PROTEOMICS - CLINICAL APPLICATIONS Y1 - 2009 SP - 106 EP - 115 VL - 3 IS - 1 UR - http://dx.doi.org/10.1002/prca.200800098 ER - TY - JOUR A1 - Boyd ZS A1 - Wu QJ A1 - O'Brien C A1 - Spoerke J A1 - Savage H A1 - Fielder PJ A1 - Amler L A1 - Yan Y A1 - Lackner MR T1 - Proteomic analysis of breast cancer molecular subtypes and biomarkers of response to targeted kinase inhibitors using reverse-phase protein microarrays JO - Mol Cancer Ther Y1 - 2008 SP - 3695 EP - 706 VL - 7 IS - 12 UR - http://dx.doi.org/10.1158/1535-7163.MCT-08-0810 ER - TY - JOUR A1 - Lavigne R A1 - Ceyssens PJ A1 - Robben J T1 - Phage proteomics: applications of mass spectrometry JO - Methods Mol Biol Y1 - 2009 SP - 239 EP - 51 VL - 502 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19082560&dopt=Abstract ER - TY - JOUR A1 - David J. Harvey A1 - Kavitha Baruah A1 - Christopher N. Scanlan T1 - Application of negative ion MS/MS to the identification of N-glycans released from carcinoembryonic antigen cell adhesion molecule 1 (CEACAM1) JO - Journal of Mass Spectrometry Y1 - 2009 SP - 50 EP - 60 VL - 44 IS - 1 UR - http://dx.doi.org/10.1002/jms.1470 ER - TY - JOUR A1 - Kyla Pennington A1 - Patrick Dicker A1 - Michael J. Dunn A1 - David R. Cotter T1 - Proteomic analysis reveals protein changes within layer 2 of the insular cortex in schizophrenia JO - PROTEOMICS Y1 - 2008 SP - 5097 EP - 5107 VL - 8 IS - 23-24 UR - http://dx.doi.org/10.1002/pmic.200800415 ER - TY - JOUR A1 - Cho SY A1 - Park PJ A1 - Shin ES A1 - Lee JH A1 - Chang HK A1 - Lee TR T1 - Proteomic analysis of mitochondrial proteins of basal and lipolytically (isoproterenol and TNF-alpha)-stimulated adipocytes JO - J Cell Biochem Y1 - 2009 SP - 257 EP - 66 VL - 106 IS - 2 UR - http://dx.doi.org/10.1002/jcb.21998 ER - TY - JOUR A1 - Kalisiak J A1 - Trauger SA A1 - Kalisiak E A1 - Morita H A1 - Fokin VV A1 - Adams MW A1 - Sharpless KB A1 - Siuzdak G T1 - Identification of a New Endogenous Metabolite and the Characterization of Its Protein Interactions through an Immobilization Approach JO - J Am Chem Soc Y1 - 2009 SP - 378 EP - 86 VL - 131 IS - 1 UR - http://dx.doi.org/10.1021/ja808172n ER - TY - JOUR A1 - Sinchaikul S A1 - Hongsachart P A1 - Sriyam S A1 - Tantipaiboonwong P A1 - Phutrakul S A1 - Chen ST T1 - Current proteomic analysis and post-translational modifications of biomarkers in human lung cancer materials JO - Chang Gung Med J Y1 - 2008 SP - 417 EP - 30 VL - 31 IS - 5 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19097588&dopt=Abstract ER - TY - JOUR A1 - Booth NJ A1 - Bilodeau-Bourgeois AL T1 - Proteomic analysis of head kidney tissue from high and low susceptibility families of channel catfish following challenge with Edwardsiella ictaluri JO - Fish Shellfish Immunol Y1 - 2008/03/18 SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.fsi.2008.03.003 ER - TY - JOUR A1 - Heinecke JW T1 - The HDL proteome: a marker - and perhaps mediator - of coronary artery disease JO - J Lipid Res Y1 - 2008/12/5 SP - EP - VL - IS - UR - http://dx.doi.org/10.1194/jlr.R800097-JLR200 ER - TY - JOUR A1 - Atiar Rahman M A1 - Kumar SG A1 - Lee SH A1 - Hwang HS A1 - Kim HA A1 - Yun JW T1 - Proteome Analysis for 3T3-L1 Adipocyte Differentiation JO - J Microbiol Biotechnol Y1 - 2008 SP - 1895 EP - 902 VL - 18 IS - 12 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19131690&dopt=Abstract ER - TY - JOUR A1 - Michael J. Dunn T1 - Celebrating the 65th Birthday of Professor Angelika Grg JO - Y1 - SP - EP - VL - IS - UR - http://dx.doi.org/10.1002/pmic.200890086 ER - TY - JOUR A1 - Larsson K A1 - Eriksson C A1 - Schwenk JM A1 - Berglund L A1 - Wester K A1 - Uhlén M A1 - Hober S A1 - Wernérus H T1 - Characterization of PrEST-based antibodies towards human Cytokeratin-17 JO - J Immunol Methods Y1 - 2008/12/21 SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.jim.2008.11.013 ER - TY - JOUR A1 - Yao G A1 - Qi D A1 - Deng C A1 - Zhang X T1 - Functionalized magnetic carbonaceous microspheres for trypsin immobilization and the application to fast proteolysis JO - J Chromatogr A Y1 - 2008 SP - 82 EP - 91 VL - 1215 IS - 1-2 UR - http://dx.doi.org/10.1016/j.chroma.2008.10.114 ER - TY - JOUR A1 - Sengupta S A1 - Majumder AL T1 - Insight into the salt tolerance factors of a wild halophytic rice, Porteresia coarctata: a physiological and proteomic approach JO - Planta Y1 - 2009/01/7 SP - EP - VL - IS - UR - http://dx.doi.org/10.1007/s00425-008-0878-y ER - TY - JOUR A1 - Anne Le Nel A1 - Jana Krenkova A1 - Karel Kleparnik A1 - Claire Smadja A1 - Myriam Taverna A1 - Jean-Louis Viovy A1 - Frantisek Foret T1 - On-chip tryptic digest with direct coupling to ESI-MS using magnetic particles JO - ELECTROPHORESIS Y1 - 2008 SP - 4944 EP - 4947 VL - 29 IS - 24 UR - http://dx.doi.org/10.1002/elps.200800431 ER - TY - JOUR A1 - Feng J A1 - Xie H A1 - Meany DL A1 - Thompson LV A1 - Arriaga EA A1 - Griffin TJ T1 - Quantitative proteomic profiling of muscle type-dependent and age-dependent protein carbonylation in rat skeletal muscle mitochondria JO - J Gerontol A Biol Sci Med Sci Y1 - 2008 SP - 1137 EP - 52 VL - 63 IS - 11 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19038828&dopt=Abstract ER - TY - JOUR A1 - Cohen AA A1 - Geva-Zatorsky N A1 - Eden E A1 - Frenkel-Morgenstern M A1 - Issaeva I A1 - Sigal A A1 - Milo R A1 - Cohen-Saidon C A1 - Liron Y A1 - Kam Z A1 - Cohen L A1 - Danon T A1 - Perzov N A1 - Alon U T1 - Dynamic Proteomics of Individual Cancer Cells in Response to a Drug JO - Science Y1 - 2008 SP - 1511 EP - 6 VL - 322 IS - 5907 UR - http://dx.doi.org/10.1126/science.1160165 ER - TY - JOUR A1 - Rutger W. W. Brouwer A1 - Sacha A. F. T. van Hijum A1 - Oscar P. Kuipers T1 - MINOMICS: visualizing prokaryote transcriptomics and proteomics data in a genomic context JO - Bioinformatics Y1 - 2009 SP - 139 EP - 140 VL - 25 IS - 1 UR - http://dx.doi.org/10.1093/bioinformatics/btn588 ER - TY - JOUR A1 - Xiquan Liang A1 - Jarkko Huuskonen A1 - Mahbod Hajivandi A1 - Raul Manzanedo A1 - Paul Predki A1 - Joseph R. Amshey A1 - R. Marshall Pope T1 - Identification and quantification of proteins differentially secreted by a pair of normal and malignant breast-cancer cell lines JO - PROTEOMICS Y1 - 2009 SP - 182 EP - 193 VL - 9 IS - 1 UR - http://dx.doi.org/10.1002/pmic.200700957 ER - TY - JOUR A1 - Lin Y A1 - Dynan WS A1 - Lee JR A1 - Zhu ZH A1 - Schade RR T1 - The Current State of Proteomics in GI Oncology JO - Dig Dis Sci Y1 - 2008/12/23 SP - EP - VL - IS - UR - http://dx.doi.org/10.1007/s10620-008-0656-5 ER - TY - JOUR A1 - Tada Y A1 - Kashimura T T1 - Proteomic analysis of salt-responsive proteins in mangrove plant, Bruguiera gymnorhiza JO - Plant Cell Physiol Y1 - 2009/01/7 SP - EP - VL - IS - UR - http://dx.doi.org/10.1093/pcp/pcp002 ER - TY - JOUR A1 - Roelfstra L A1 - Deeg CA A1 - Hauck SM A1 - Buse C A1 - Membrez M A1 - Betschart B A1 - Pfister K T1 - Protein expression profile of Gasterophilus intestinalis larvae causing horse gastric myiasis and characterization of horse immune reaction JO - Y1 - SP - EP - VL - IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19133133&dopt=Abstract ER - TY - JOUR A1 - Raman Mathur A1 - Peter B. O'Connor T1 - Artifacts in Fourier transform mass spectrometry JO - Rapid Communications in Mass Spectrometry Y1 - 2009 SP - 523 EP - 529 VL - 23 IS - 4 UR - http://dx.doi.org/10.1002/rcm.3904 ER - TY - JOUR A1 - Michael Hecker A1 - Haike Antelmann A1 - Knut Bttner A1 - Jrg Bernhardt T1 - Gel-based proteomics of Gram-positive bacteria: A powerful tool to address physiological questions JO - PROTEOMICS Y1 - 2008 SP - 4958 EP - 4975 VL - 8 IS - 23-24 UR - http://dx.doi.org/10.1002/pmic.200800278 ER - TY - JOUR A1 - Rhim T A1 - Choi YS A1 - Nam BY A1 - Uh ST A1 - Park JS A1 - Kim YH A1 - Paik YK A1 - Park CS T1 - Plasma protein profiles in early asthmatic responses to inhalation allergen challenge JO - Allergy Y1 - 2009 SP - 47 EP - 54 VL - 64 IS - 1 UR - http://dx.doi.org/10.1111/j.1398-9995.2008.01817.x ER - TY - JOUR A1 - Gergana Metodieva A1 - Christina Greenwood A1 - Louise Alldridge A1 - Paul Sauven A1 - Metodi Metodiev T1 - A peptide-centric approach to breast cancer biomarker discovery utilizing label-free multiple reaction monitoring mass spectrometry JO - PROTEOMICS - CLINICAL APPLICATIONS Y1 - 2009 SP - 78 EP - 82 VL - 3 IS - 1 UR - http://dx.doi.org/10.1002/prca.200800072 ER - TY - JOUR A1 - Emekli U A1 - Gunasekaran K A1 - Nussinov R A1 - Haliloglu T T1 - What Can We Learn From Highly Connected beta-Rich Structures for Structural Interface Design? JO - Methods Mol Biol Y1 - 2008 SP - 235 EP - 53 VL - 474 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19031068&dopt=Abstract ER - TY - JOUR A1 - Shenar N A1 - Sommerer N A1 - Martinez J A1 - Enjalbal C T1 - Comparison of LID versus CID activation modes in tandem mass spectrometry of peptides JO - J Mass Spectrom Y1 - 2008/12/18 SP - EP - VL - IS - UR - http://dx.doi.org/10.1002/jms.1535 ER - TY - JOUR A1 - Einar J. Stauber A1 - Andreas Busch A1 - Bianca Naumann A1 - Ale? Svato? A1 - Michael Hippler T1 - Proteotypic profiling of LHCI from Chlamydomonas reinhardtii provides new insights into structure and function of the complex JO - PROTEOMICS Y1 - 2009 SP - 398 EP - 408 VL - 9 IS - 2 UR - http://dx.doi.org/10.1002/pmic.200700620 ER - TY - JOUR A1 - Cox J A1 - Mann M T1 - MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification JO - Nat Biotechnol Y1 - 2008 SP - 1367 EP - 72 VL - 26 IS - 12 UR - http://dx.doi.org/10.1038/nbt.1511 ER - TY - JOUR A1 - Plomp M A1 - Malkin AJ T1 - Mapping of Proteomic Composition on the Surfaces of Bacillus Spores by Atomic Force Microscopy-Based Immunolabeling JO - Langmuir Y1 - 2009 SP - 403 EP - 9 VL - 25 IS - 1 UR - http://dx.doi.org/10.1021/la803129r ER - TY - JOUR A1 - Yoshihiko Nakata A1 - Yoshiro Honda A1 - Satoshi Ninomiya A1 - Toshio Seki A1 - Takaaki Aoki A1 - Jiro Matsuo T1 - Matrix-free high-resolution imaging mass spectrometry with high-energy ion projectiles JO - Journal of Mass Spectrometry Y1 - 2009 SP - 128 EP - 136 VL - 44 IS - 1 UR - http://dx.doi.org/10.1002/jms.1482 ER - TY - JOUR A1 - Delphine Debois A1 - Kassem Hamze A1 - Vincent Gurineau A1 - Jean-Pierre Le Car A1 - I. 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Sror A1 - Alain Brunelle A1 - Olivier Laprvote T1 - In situ localisation and quantification of surfactins in a Bacillus subtilis swarming community by imaging mass spectrometry JO - Y1 - SP - EP - VL - IS - UR - http://dx.doi.org/10.1002/pmic.200890094 ER - TY - JOUR A1 - Zhou C A1 - Nitschke AM A1 - Xiong W A1 - Zhang Q A1 - Tang Y A1 - Bloch M A1 - Elliott S A1 - Zhu Y A1 - Bazzone L A1 - Yu D A1 - Weldon CB A1 - Schiff R A1 - McLachlan JA A1 - Beckman BS A1 - Wiese TE A1 - Nephew KP A1 - Shan B A1 - Burow ME A1 - Wang G T1 - Proteomic analysis of tumor necrosis factor-alpha resistant human breast cancer cells reveals a MEK5/Erk5-mediated epithelial-mesenchymal transition phenotype JO - Y1 - SP - EP - VL - IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19087274&dopt=Abstract ER - TY - JOUR A1 - Huang S A1 - Taylor NL A1 - Narsai R A1 - Eubel H A1 - Whelan J A1 - Millar AH T1 - Experimental analysis of the rice mitochondrial proteome, its biogenesis and heterogeneity JO - Plant Physiol Y1 - 2008/11/14 SP - EP - VL - IS - UR - http://dx.doi.org/10.1104/pp.108.131300 ER - TY - JOUR A1 - Horgan RP A1 - Clancy OH A1 - Myers JE A1 - Baker PN T1 - An overview of proteomic and metabolomic technologies and their application to pregnancy research JO - BJOG Y1 - 2009 SP - 173 EP - 81 VL - 116 IS - 2 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19076949&dopt=Abstract ER - TY - JOUR A1 - Maruyama Y A1 - Wakamatsu A A1 - Kawamura Y A1 - Kimura K A1 - Yamamoto J A1 - Nishikawa T A1 - Kisu Y A1 - Sugano S A1 - Goshima N A1 - Isogai T A1 - Nomura N T1 - Human Gene and Protein Database (HGPD): a novel database presenting a large quantity of experiment-based results in human proteomics JO - Nucl Acids Res Y1 - 2009 SP - D762 EP - 6 VL - 37 IS - Database issue UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19073703&dopt=Abstract ER - TY - JOUR A1 - Zhu H A1 - Bi YD A1 - Yu LJ A1 - Guo DD A1 - Wang BC T1 - Comparative proteomic analysis of apomictic monosomic addition line of Beta corolliflora and Beta vulgaris L. in sugar beet JO - Mol Biol Rep Y1 - 2008/12/24 SP - EP - VL - IS - UR - http://dx.doi.org/10.1007/s11033-008-9421-2 ER - TY - JOUR A1 - Chengfu Xu A1 - Xuequn Zhang A1 - Chaohui Yu A1 - Guohua Lu A1 - Shaohua Chen A1 - Liming Xu A1 - Wei Ding A1 - Qiaojuan Shi A1 - Youming Li T1 - Proteomic analysis of hepatic ischemia/reperfusion injury and ischemic preconditioning in mice revealed the protective role of ATP5? JO - PROTEOMICS Y1 - 2009 SP - 409 EP - 419 VL - 9 IS - 2 UR - http://dx.doi.org/10.1002/pmic.200800393 ER - TY - JOUR A1 - Langer R A1 - Ott K A1 - Specht K A1 - Becker K A1 - Lordick F A1 - Burian M A1 - Herrmann K A1 - Schrattenholz A A1 - Cahill MA A1 - Schwaiger M A1 - Hofler H A1 - Wester HJ T1 - Protein expression profiling in esophageal adenocarcinoma patients indicates association of heat-shock protein 27 expression and chemotherapy response JO - Clin Cancer Res Y1 - 2008 SP - 8279 EP - 87 VL - 14 IS - 24 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19088045&dopt=Abstract ER - TY - JOUR A1 - Yan X A1 - Liu T A1 - Yang S A1 - Ding Q A1 - Liu Y A1 - Zhang X A1 - Que H A1 - Wei K A1 - Luo Z A1 - Liu S T1 - Proteomic Profiling of the Insoluble Pellets of the Transected Rat Spinal Cord JO - J Neurotrauma Y1 - 2009/01/2 SP - EP - VL - IS - UR - http://dx.doi.org/10.1089/neu.2008.0533 ER - TY - JOUR A1 - Holzmuller P A1 - Grébaut P A1 - Peltier JB A1 - Brizard JP A1 - Perrone T A1 - Gonzatti M A1 - Bengaly Z A1 - Rossignol M A1 - Aso PM A1 - Vincendeau P A1 - Cuny G A1 - Boulangé A A1 - Frutos R T1 - Secretome of animal trypanosomes JO - Ann N Y Acad Sci Y1 - 2008 SP - 337 EP - 42 VL - 1149 IS - UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19120244&dopt=Abstract ER - TY - JOUR A1 - Hsieh A1 - Jung-Feng; Chen A1 - Shui-Tein T1 - A Functional Proteomic Approach to the Identification and Characterization of Protein Composition in Wheat Leaf JO - Current Proteomics Y1 - 2008 SP - 253 EP - 266 VL - 5 IS - 4 UR - http://www.ingentaconnect.com/content/ben/cp/2008/00000005/00000004/art00004 ER - TY - JOUR A1 - Linfen Yu A1 - Huaiqing Huang A1 - Xiuling Dong A1 - Dapeng Wu A1 - Jinhua Qin A1 - Bingcheng Lin T1 - Simple, fast and high-throughput single-cell analysis on PDMS microfluidic chips JO - ELECTROPHORESIS Y1 - 2008 SP - 5055 EP - 5060 VL - 29 IS - 24 UR - http://dx.doi.org/10.1002/elps.200800331 ER - TY - JOUR A1 - Dinglasan RR A1 - Devenport M A1 - Florens L A1 - Johnson JR A1 - McHugh CA A1 - Donnelly-Doman M A1 - Carucci DJ A1 - Yates JR 3rd A1 - Jacobs-Lorena M T1 - The Anopheles gambiae adult midgut peritrophic matrix proteome JO - Insect Biochem Mol Biol Y1 - 2008/11/11 SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.ibmb.2008.10.010 ER - TY - JOUR A1 - Xin Wang A1 - Yangchao Chen A1 - Quan-bin Han A1 - Chu-yan Chan A1 - Hua Wang A1 - Zheng Liu A1 - Christopher Hon-ki Cheng A1 - David T. 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Dangl A1 - Dierk Scheel A1 - Justin Lee T1 - Combining subproteome enrichment and Rubisco depletion enables identification of low abundance proteins differentially regulated during plant defense JO - PROTEOMICS Y1 - 2009 SP - 138 EP - 147 VL - 9 IS - 1 UR - http://dx.doi.org/10.1002/pmic.200800293 ER - TY - JOUR A1 - Zacchia M A1 - Trepiccione F A1 - Morelli F A1 - Pani A A1 - Capasso G T1 - Nephrotic syndrome: new concepts in the pathophysiology of sodium retention JO - J Nephrol Y1 - 2008 SP - 836 EP - 42 VL - 21 IS - 6 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19034867&dopt=Abstract ER - TY - JOUR A1 - Mishra Y A1 - Chaurasia N A1 - Rai LC T1 - Heat Pretreatment Alleviates UV-B Toxicity in the Cyanobacterium Anabaena doliolum: A Proteomic Analysis of Cross Tolerance JO - Photochem Photobiol Y1 - 2008/12/4 SP - EP - VL - IS - UR - http://dx.doi.org/10.1111/j.1751-1097.2008.00469.x ER - TY - JOUR A1 - Nie L A1 - Wu G A1 - Zhang W T1 - Statistical Application and Challenges in Global Gel-Free Proteomic Analysis by Mass Spectrometry JO - Crit Rev Biotechnol Y1 - 2008 SP - 297 EP - 307 VL - 28 IS - 4 UR - http://dx.doi.org/10.1080/07388550802543158 ER - TY - JOUR A1 - Botros L A1 - Sakkas D A1 - Seli E T1 - Metabolomics and its application for non-invasive embryo assessment in IVF JO - Mol Hum Reprod Y1 - 2008 SP - 679 EP - 90 VL - 14 IS - 12 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19129367&dopt=Abstract ER - TY - JOUR A1 - M. 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Lubman T1 - A novel phosphoprotein analysis scheme for assessing changes in premalignant and malignant breast cell lines using 2-D liquid separations, protein microarrays, and tandem mass spectrometry JO - PROTEOMICS - CLINICAL APPLICATIONS Y1 - 2009 SP - 51 EP - 66 VL - 3 IS - 1 UR - http://dx.doi.org/10.1002/prca.200800097 ER - TY - JOUR A1 - Verleyen P A1 - Chen X A1 - Baron S A1 - Preumont A A1 - Hua YJ A1 - Schoofs L A1 - Clynen E T1 - Cloning of neuropeptide-like precursor 1 in the gray flesh fly and peptide identification and expression JO - Peptides Y1 - 2008/12/11 SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.peptides.2008.12.006 ER - TY - JOUR A1 - Berman HM A1 - Westbrook JD A1 - Gabanyi MJ A1 - Tao W A1 - Shah R A1 - Kouranov A A1 - Schwede T A1 - Arnold K A1 - Kiefer F A1 - Bordoli L A1 - Kopp J A1 - Podvinec M A1 - Adams PD A1 - Carter LG A1 - Minor W A1 - Nair R A1 - Baer JL T1 - The protein structure initiative structural genomics knowledgebase JO - Nucl Acids Res Y1 - 2009 SP - D365 EP - 8 VL - 37 IS - Database issue UR - http://dx.doi.org/10.1093/nar/gkn790 ER - TY - JOUR A1 - Smith SK A1 - Nisbet AJ A1 - Meikle LI A1 - Inglis NF A1 - Sales J A1 - Beynon RJ A1 - Matthews JB T1 - Proteomic analysis of excretory/secretory products released by Teladorsagia circumcincta larvae early post-infection JO - Parasite Immunol Y1 - 2009 SP - 10 EP - 9 VL - 31 IS - 1 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19121079&dopt=Abstract ER - TY - JOUR A1 - Tanaka K A1 - Tsugawa N A1 - Kim YO A1 - Sanuki N A1 - Takeda U A1 - Lee LJ T1 - A new rapid and comprehensive peptidome analysis by one-step direct transfer technology for 1-D electrophoresis/MALDI mass spectrometry JO - Biochem Biophys Res Commun Y1 - 2009 SP - 110 EP - 4 VL - 379 IS - 1 UR - http://dx.doi.org/10.1016/j.bbrc.2008.12.016 ER - TY - JOUR A1 - Yao H A1 - Zhang Z A1 - Xiao Z A1 - Chen Y A1 - Li C A1 - Zhang P A1 - Li M A1 - Liu Y A1 - Guan Y A1 - Yu Y A1 - Chen Z T1 - Identification of metastasis associated proteins in human lung squamous carcinoma using two-dimensional difference gel electrophoresis and laser capture microdissection JO - Lung Cancer Y1 - 2008/12/4 SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.lungcan.2008.10.024 ER - TY - JOUR A1 - Aswini K. 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Stuart T1 - A comprehensive analysis of Trypanosoma brucei mitochondrial proteome JO - PROTEOMICS Y1 - 2009 SP - 434 EP - 450 VL - 9 IS - 2 UR - http://dx.doi.org/10.1002/pmic.200800477 ER - TY - JOUR A1 - Revealed by N-terminal Sequencing A1 - Inverted PCR A1 - High Resolution Mass T1 - "Unknown Genome" Proteomics: A New NAD(P)-dependent Epimerase/Dehydratase JO - Mol Cell Proteomics Y1 - 2009 SP - 122 EP - 131 VL - 8 IS - 1 UR - http://www.mcponline.org/cgi/content/abstract/8/1/122?etoc ER - TY - JOUR A1 - Avram Z Traum T1 - Urine proteomic profiling to identify biomarkers of steroid resistance in pediatric nephrotic syndrome JO - Expert Review of Proteomics Y1 - 2008 SP - 715 EP - 719 VL - 5 IS - 5 UR - http://dx.doi.org/10.1586/14789450.5.5.715 ER - TY - JOUR A1 - Dakna M A1 - He Z A1 - Yu WC A1 - Mischak H A1 - Kolch W T1 - Technical, bioinformatical and statistical aspects of liquid chromatography-mass spectrometry (LC-MS) and capillary electrophoresis-mass spectrometry (CE-MS) based clinical proteomics: A critical assessment JO - J Chromatogr B Analyt Technol Biomed Life Sci Y1 - 2008/11/6 SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.jchromb.2008.10.048 ER - TY - JOUR A1 - Lee LC A1 - Chen CM A1 - Chen FL A1 - Lin PY A1 - Hsiao YC A1 - Wang PR A1 - Su MT A1 - Hsieh-Li HM A1 - Hwang JC A1 - Wu CH A1 - Lee GC A1 - Singh S A1 - Lin Y A1 - Hsieh SY A1 - Lee-Chen GJ A1 - Lin JY T1 - Altered expression of HSPA5, HSPA8 and PARK7 in spinocerebellar ataxia type 17 identified by 2-dimensional fluorescence difference in gel electrophoresis JO - Clin Chim Acta Y1 - 2009 SP - 56 EP - 62 VL - 400 IS - 1-2 UR - http://dx.doi.org/10.1016/j.cca.2008.10.013 ER - TY - JOUR A1 - Lee HM A1 - Reed J A1 - Greeley GH Jr A1 - Englander EW T1 - Impaired mitochondrial respiration and protein nitration in the rat hippocampus after acute inhalation of combustion smoke JO - Toxicol Appl Pharmacol Y1 - 2008/12/24 SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.taap.2008.12.010 ER - TY - JOUR A1 - Abdel-Rahman MA A1 - Omran MA A1 - Abdel-Nabi IM A1 - Ueda H A1 - McVean A T1 - Intraspecific variation in the Egyptian scorpion Scorpio maurus palmatus venom collected from different biotopes JO - Toxicon Y1 - 2008/12/11 SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.toxicon.2008.12.007 ER - TY - JOUR A1 - Kraljevic Pavelic S A1 - Sedic M A1 - Hock K A1 - Vucinic S A1 - Jurisic D A1 - Gehrig P A1 - Scott M A1 - Schlapbach R A1 - Cacev T A1 - Kapitanovic S A1 - Pavelic K T1 - An integrated proteomics approach for studying the molecular pathogenesis of Dupuytren's disease JO - J Pathol Y1 - 2008/11/4 SP - EP - VL - IS - UR - http://dx.doi.org/10.1002/path.2483 ER - TY - JOUR A1 - Marrero K A1 - Sánchez A A1 - Rodríguez-Ulloa A A1 - González LJ A1 - Castellanos-Serra L A1 - Paz-Lago D A1 - Campos J A1 - Rodríguez BL A1 - Suzarte E A1 - Ledón T A1 - Padrón G A1 - Fando R T1 - Anaerobic growth promotes synthesis of colonization factors encoded at the Vibrio pathogenicity island in Vibrio cholerae El Tor JO - Res Microbiol Y1 - 2009 SP - 48 EP - 56 VL - 160 IS - 1 UR - http://dx.doi.org/10.1016/j.resmic.2008.10.005 ER - TY - JOUR A1 - Lectin Profiling for Glycan-related Biomarker Verification T1 - Focused Differential Glycan Analysis with the Platform Antibody-assisted JO - Mol Cell Proteomics Y1 - 2009 SP - 99 EP - 108 VL - 8 IS - 1 UR - http://www.mcponline.org/cgi/content/abstract/8/1/99?etoc ER - TY - JOUR A1 - Jae-Kuk Kim A1 - Kermit K. Murray T1 - Matrix-assisted laser desorption/ionization with untreated silicon targets JO - Rapid Communications in Mass Spectrometry Y1 - 2009 SP - 203 EP - 205 VL - 23 IS - 1 UR - http://dx.doi.org/10.1002/rcm.3842 ER - TY - JOUR A1 - Tshala-Katumbay D A1 - Monterroso V A1 - Kayton R A1 - Lasarev M A1 - Sabri M A1 - Spencer P T1 - Probing mechanisms of axonopathy. Part II: Protein targets of 2,5-hexanedione, the neurotoxic metabolite of the aliphatic solvent n-hexane JO - Toxicol Sci Y1 - 2009 SP - 482 EP - 9 VL - 107 IS - 2 UR - http://dx.doi.org/10.1093/toxsci/kfn241 ER - TY - JOUR A1 - Ulrich Mayer A1 - Alexander Kller A1 - Philipp C. Daiber A1 - Inge Neudorf A1 - Uwe Warnken A1 - Martina Schnlzer A1 - Stephan Frings A1 - Frank Mhrlen T1 - The proteome of rat olfactory sensory cilia JO - PROTEOMICS Y1 - 2009 SP - 322 EP - 334 VL - 9 IS - 2 UR - http://dx.doi.org/10.1002/pmic.200800149 ER - TY - JOUR A1 - Oh J A1 - Gurnani P A1 - Schorge J A1 - Rosenblatt K A1 - Gao J T1 - An Extended Markov Blanket Approach to Proteomic Biomarker Detection from High-Resolution Mass Spectrometry Data JO - IEEE Trans Inf Technol Biomed Y1 - 2008/12/31 SP - EP - VL - IS - UR - http://dx.doi.org/10.1109/TITB.2008.2007909 ER - TY - JOUR A1 - van Brummelen AC A1 - Olszewski KL A1 - Wilinski D A1 - Llinás M A1 - Louw AI A1 - Birkholtz LM T1 - Co-inhibition of Plasmodium falciparum S-adenosylmethionine decarboxylase/ornithine decarboxylase reveals perturbation-specific compensatory mechanisms by transcriptome, proteome and metabolome analyses JO - J Biol Chem Y1 - 2008/12/10 SP - EP - VL - IS - UR - http://dx.doi.org/10.1074/jbc.M807085200 ER - TY - JOUR A1 - Hukkanen A A1 - Kokko H A1 - Buchala A A1 - Häyrinen J A1 - Kärenlampi S T1 - Benzothiadiazole affects the leaf proteome in arctic bramble (Rubus arcticus) JO - Mol Plant Pathol Y1 - 2008 SP - 799 EP - 808 VL - 9 IS - 6 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19019008&dopt=Abstract ER - TY - JOUR A1 - Yun SH A1 - Choi CW A1 - Park SH A1 - Lee JC A1 - Leem SH A1 - Choi JS A1 - Kim S A1 - Kim SI T1 - Proteomic analysis of outer membrane proteins from Acinetobacter baumannii DU202 in tetracycline stress condition JO - J Microbiol Y1 - 2008 SP - 720 EP - 7 VL - 46 IS - 6 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19107403&dopt=Abstract ER - TY - JOUR A1 - Shirai Y A1 - Sogawa K A1 - Yamaguchi T A1 - Sudo K A1 - Nakagawa A A1 - Sakai Y A1 - Ishihara T A1 - Sunaga M A1 - Nezu M A1 - Tomonaga T A1 - Miyazaki M A1 - Saisho H A1 - Nomura F T1 - Protein profiling in pancreatic juice for detection of intraductal papillary mucinous neoplasm of the pancreas JO - Hepatogastroenterology Y1 - 2008 SP - 1824 EP - 9 VL - 55 IS - 86-87 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19102401&dopt=Abstract ER - TY - JOUR A1 - Menon R A1 - Zhang Q A1 - Zhang Y A1 - Fermin D A1 - Bardeesy N A1 - DePinho RA A1 - Lu C A1 - Hanash SM A1 - Omenn GS A1 - States DJ T1 - Identification of novel alternative splice isoforms of circulating proteins in a mouse model of human pancreatic cancer JO - Cancer Res Y1 - 2009 SP - 300 EP - 9 VL - 69 IS - 1 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19118015&dopt=Abstract ER - TY - JOUR A1 - Leopold Kremser A1 - Dieter Blaas A1 - Ernst Kenndler T1 - Virus analysis using electromigration techniques JO - ELECTROPHORESIS Y1 - 2009 SP - 133 EP - 140 VL - 30 IS - 1 UR - http://dx.doi.org/10.1002/elps.200800590 ER - TY - JOUR A1 - Benson LM A1 - Mason CJ A1 - Friedman O A1 - Kita H A1 - Bergen Iii HR A1 - Plager DA T1 - Extensive fractionation and identification of proteins within nasal lavage fluids from allergic rhinitis and asthmatic chronic rhinosinusitis patients JO - J Sep Sci Y1 - 2009 SP - 44 EP - 56 VL - 32 IS - 1 UR - http://dx.doi.org/10.1002/jssc.200800474 ER - TY - JOUR A1 - Rabilloud T A1 - Vaezzadeh AR A1 - Potier N A1 - Lelong C A1 - Leize-Wagner E A1 - Chevallet M T1 - Power and limitations of electrophoretic separations in proteomics strategies JO - Mass Spectrom Rev Y1 - 2008/12/12 SP - EP - VL - IS - UR - http://dx.doi.org/10.1002/mas.20204 ER - TY - JOUR A1 - John F. 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Harrison A1 - Jake Yue Chen T1 - Dissecting the human plasma proteome and inflammatory response biomarkers JO - PROTEOMICS Y1 - 2009 SP - 470 EP - 484 VL - 9 IS - 2 UR - http://dx.doi.org/10.1002/pmic.200800507 ER - TY - JOUR A1 - Looze C A1 - Yui D A1 - Leung L A1 - Ingham M A1 - Kaler M A1 - Yao X A1 - Wu WW A1 - Shen RF A1 - Daniels MP A1 - Levine SJ T1 - Proteomic profiling of human plasma exosomes identifies PPARgamma as an exosome-associated protein JO - Biochem Biophys Res Commun Y1 - 2009 SP - 433 EP - 8 VL - 378 IS - 3 UR - http://dx.doi.org/10.1016/j.bbrc.2008.11.050 ER - TY - JOUR A1 - Wu Y A1 - Lonardi S T1 - A linear-time algorithm for predicting functional annotations from ppi networks JO - J Bioinform Comput Biol Y1 - 2008 SP - 1049 EP - 65 VL - 6 IS - 6 UR - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19090017&dopt=Abstract ER - TY - JOUR A1 - Mussel Mytilus edulis T1 - Genetic Variation Underlying Protein Expression in Eggs of the Marine JO - Mol Cell Proteomics Y1 - 2009 SP - 132 EP - 144 VL - 8 IS - 1 UR - http://www.mcponline.org/cgi/content/abstract/8/1/132?etoc ER - TY - JOUR A1 - Robalino J A1 - Carnegie RB A1 - O'Leary N A1 - Ouvry-Patat SA A1 - de la Vega E A1 - Prior S A1 - Gross PS A1 - Browdy CL A1 - Chapman RW A1 - Schey KL A1 - Warr G T1 - Contributions of functional genomics and proteomics to the study of immune responses in the Pacific white leg shrimp Litopenaeus vannamei JO - Vet Immunol Immunopathol Y1 - 2008/11/5 SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.vetimm.2008.10.329 ER - TY - JOUR A1 - Madden K A1 - Flowers L A1 - Salani R A1 - Horowitz I A1 - Logan S A1 - Kowalski K A1 - Xie J A1 - Mohammed SI T1 - Proteomics-based approach to elucidate the mechanism of antitumor effect of curcumin in cervical cancer JO - Prostaglandins Leukot Essent Fatty Acids Y1 - 2008/12/4 SP - EP - VL - IS - UR - http://dx.doi.org/10.1016/j.plefa.2008.10.003 ER - TY - JOUR A1 - Iain Melvin A1 - Jason Weston A1 - Christina Leslie A1 - William Stafford Noble T1 - RANKPROP: a web server for protein remote homology detection JO - Bioinformatics Y1 - 2009 SP - 121 EP - 122 VL - 25 IS - 1 UR - http://dx.doi.org/10.1093/bioinformatics/btn567 ER - TY - JOUR A1 - Svenja Jarchow A1 - Carsten Lck A1 - Angelika Grg A1 - Arne Skerra T1 - Identification of potential substrate proteins for the periplasmic Escherichia coli chaperone Skp JO - PROTEOMICS Y1 - 2008 SP - 4987 EP - 4994 VL - 8 IS - 23-24 UR - http://dx.doi.org/10.1002/pmic.200800288 ER - TY - JOUR A1 - Diane Mataija-Botelho A1 - Patrick Murphy A1 - Devanand M. Pinto A1 - Dawn L. MacLellan A1 - Chantale Langlois A1 - Alan A. Doucette T1 - A qualitative proteome investigation of the sediment portion of human urine: Implications in the biomarker discovery process JO - PROTEOMICS - CLINICAL APPLICATIONS Y1 - 2009 SP - 95 EP - 105 VL - 3 IS - 1 UR - http://dx.doi.org/10.1002/prca.200800019 ER -