%A Rie Uematsu
%A Yasuro Shinohara
%A Hiroaki Nakagawa
%A Masaki Kurogochi
%A Jun-ichi Furukawa
%A Yoshiaki Miura
%A Masashi Akiyama
%A Hiroshi Shimizu
%A Shin-Ichiro Nishimura
%T Glycosylation Specific for Adhesion Molecules in Epidermis and Its Receptor Revealed by Glycoform-focused Reverse Genomics
%0 Journal Article
%D 2009
%J Mol Cell Proteomics
%P 232-244
%V 8
%N 2
%U http://www.mcponline.org/cgi/content/abstract/8/2/232?etoc

%A Ganesh Kumar Agrawal
%A Nam-Soo Jwa
%A Randeep Rakwal
%T Rice proteomics: Ending phase I and the beginning of phase II
%0 Journal Article
%D 2009
%J PROTEOMICS
%P 935-963
%V 9
%N 4
%U http://dx.doi.org/10.1002/pmic.200800594

%A Gregory O. Staples
%A Michael J. Bowman
%A Catherine E. Costello
%A Alicia M. Hitchcock
%A James M. Lau
%A Nancy Leymarie
%A Christine Miller
%A Hicham Naimy
%A Xiaofeng Shi
%A Joseph Zaia
%T A chip-based amide-HILIC LC/MS platform for glycosaminoglycan glycomics profiling
%0 Journal Article
%D 2009
%J PROTEOMICS
%P 686-695
%V 9
%N 3
%U http://dx.doi.org/10.1002/pmic.200701008

%A Morell M
%A Avilés FX
%A Ventura S
%T Detecting and interfering protein interactions: towards the control of biochemical pathways
%0 Journal Article
%D 2009
%J Curr Med Chem
%P 362-79
%V 16
%N 3
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19149583&dopt=Abstract

%A Sarah Dunn Keene
%A Todd M. Greco
%A Ioannis Parastatidis
%A Seon-Hwa Lee
%A Ethan G. Hughes
%A Rita J. Balice-Gordon
%A David W. Speicher
%A Harry Ischiropoulos
%T Mass spectrometric and computational analysis of cytokine-induced alterations in the astrocyte secretome
%0 Journal Article
%D 2009
%J PROTEOMICS
%P 768-782
%V 9
%N 3
%U http://dx.doi.org/10.1002/pmic.200800385

%A Carlo Vascotto
%A Laura Cesaratto
%A Leo A. H. Zeef
%A Marta Deganuto
%A Chiara D'Ambrosio
%A Andrea Scaloni
%A Milena Romanello
%A Giuseppe Damante
%A Giulio Taglialatela
%A Daniela Delneri
%A Mark R. Kelley
%A Sankar Mitra
%A Franco Quadrifoglio
%A Gianluca Tell
%T Genome-wide analysis and proteomic studies reveal APE1/Ref-1 multifunctional role in mammalian cells
%0 Journal Article
%D 2009
%J PROTEOMICS
%P 1058-1074
%V 9
%N 4
%U http://dx.doi.org/10.1002/pmic.200800638

%A Doolittle MH
%A Ben-Zeev O
%A Bassilian S
%A Whitelegge JP
%A Péterfy M
%A Wong H
%T Hepatic lipase maturation:A partial proteome of interacting factors
%0 Journal Article
%D 2009
%J J Lipid Res
%P -
%V 
%N 
%U http://dx.doi.org/10.1194/jlr.M800603-JLR200
%8 Jan 8, 2009

%A Thijs R. H. M. Kouwen
%A Ren� van der Ploeg
%A Haike Antelmann
%A Michael Hecker
%A Georg Homuth
%A Ulrike M�der
%A Jan Maarten van Dijl
%T Overflow of a hyper-produced secretory protein from the Bacillus Sec pathway into the Tat pathway for protein secretion as revealed by proteogenomics
%0 Journal Article
%D 2009
%J PROTEOMICS
%P 1018-1032
%V 9
%N 4
%U http://dx.doi.org/10.1002/pmic.200800580

%A Ejsing CS
%A Sampaio JL
%A Surendranath V
%A Duchoslav E
%A Ekroos K
%A Klemm RW
%A Simons K
%A Shevchenko A
%T Global analysis of the yeast lipidome by quantitative shotgun mass spectrometry
%0 Journal Article
%D 2009
%J Proc Natl Acad Sci U S A
%P 2136-41
%V 106
%N 7
%U http://dx.doi.org/10.1073/pnas.0811700106

%A Armirotti A
%A Benatti U
%A Damonte G
%T Top-down proteomics with a quadrupole time-of-flight mass spectrometer and collision-induced dissociation
%0 Journal Article
%D 2009
%J Rapid Commun Mass Spectrom
%P 661-666
%V 23
%N 5
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19184982&dopt=Abstract

%A Tommaso R. I. Cataldi
%A Giuliana Bianco
%A Salvatore Abate
%T Accurate mass analysis of N-acyl-homoserine-lactones and cognate lactone-opened compounds in bacterial isolates of Pseudomonas aeruginosa PAO1 by LC-ESI-LTQ-FTICR-MS
%0 Journal Article
%D 2009
%J Journal of Mass Spectrometry
%P 182-192
%V 44
%N 2
%U http://dx.doi.org/10.1002/jms.1479

%A Benjamin L. Schulz and Markus Aebi
%T Analysis of Glycosylation Site Occupancy Reveals a Role for Ost3p and Ost6p in Site-specific N-Glycosylation Efficiency
%0 Journal Article
%D 2009
%J Mol Cell Proteomics
%P 357-364
%V 8
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%U http://www.mcponline.org/cgi/content/abstract/8/2/357?etoc

%A Sandra Orchard
%A Peipei Ping
%T HUPO World Congress Publication Committee Meeting August 2008, Amsterdam, The Netherlands
%0 Journal Article
%D 2009
%J PROTEOMICS
%P 502-503
%V 9
%N 3
%U http://dx.doi.org/10.1002/pmic.200800839

%A Uzal EN
%A Gómez-Ros LV
%A Hernández JA
%A Pedreño MA
%A Cuello J
%A Ros Barceló A
%T Analysis of the soluble cell wall proteome of gymnosperms
%0 Journal Article
%D 2009
%J J Plant Physiol
%P -
%V 
%N 
%U http://dx.doi.org/10.1016/j.jplph.2008.11.009
%8 Jan 19, 2009

%A Greening DW
%A Glenister KM
%A Sparrow RL
%A Simpson RJ
%T Enrichment of human platelet membranes for proteomic analysis
%0 Journal Article
%D 2009
%J Methods Mol Biol
%P 245-58
%V 528
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%A Sun W
%A Zhong F
%A Zhi L
%A Zhou G
%A He F
%T Systematic -omics analysis of HBV-associated liver diseases
%0 Journal Article
%D 2009
%J Cancer Lett
%P -
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%N 
%U http://dx.doi.org/10.1016/j.canlet.2008.12.002
%8 Jan 12, 2009

%A Aryal UK
%A Olson DJ
%A Ross AR
%T Optimization of immobilized gallium (III) ion affinity chromatography for selective binding and recovery of phosphopeptides from protein digests
%0 Journal Article
%D 2008
%J J Biomol Tech
%P 296-310
%V 19
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%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19183793&dopt=Abstract

%A Carola W. N. Damen
%A Trijn Isra�ls
%A Huib N. Caron
%A Jan H.M. Schellens
%A Hilde Rosing
%A Jos H. Beijnen
%T Validated assay for the simultaneous quantification of total vincristine and actinomycin-D concentrations in human EDTA plasma and of vincristine concentrations in human plasma ultrafiltrate by high-performance liquid chromatography coupled with tandem ma
%0 Journal Article
%D 2009
%J Rapid Communications in Mass Spectrometry
%P 763-774
%V 23
%N 6
%U http://dx.doi.org/10.1002/rcm.3938

%A Li MX
%A Xiao ZQ
%A Liu YF
%A Chen YH
%A Li C
%A Zhang PF
%A Li MY
%A Li F
%A Peng F
%A Duan CJ
%A Yi H
%A Yao HX
%A Chen ZC
%T Quantitative proteomic analysis of differential proteins in the stroma of nasopharyngeal carcinoma and normal nasopharyngeal epithelial tissue
%0 Journal Article
%D 2009
%J J Cell Biochem
%P 570-9
%V 106
%N 4
%U http://dx.doi.org/10.1002/jcb.22028

%A Lee CM
%A Pohl J
%A Morgan ET
%T Dual Mechanisms of CYP3A Protein Regulation by Proinflammatory Cytokine Stimulation in Primary Hepatocyte Cultures
%0 Journal Article
%D 2009
%J Drug Metab Dispos
%P -
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%8 Jan 26, 2009

%A Li-Na Wei
%T Post-translational modifications of orphan nuclear receptor TR2 - new insights into drug targets for stem cell therapy and the effect of retinoic acid
%0 Journal Article
%D 2009
%J PROTEOMICS - CLINICAL APPLICATIONS
%P 279-285
%V 3
%N 2
%U http://dx.doi.org/10.1002/prca.200800100

%A Heller T
%A Asif AR
%A Petrova DT
%A Doncheva Y
%A Wieland E
%A Oellerich M
%A Shipkova M
%A Armstrong VW
%T Differential Proteomic Analysis of Lymphocytes Treated With Mycophenolic Acid Reveals Caspase 3-Induced Cleavage of Rho GDP Dissociation Inhibitor 2
%0 Journal Article
%D 2009
%J Ther Drug Monit
%P -
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%8 Feb 10, 2009

%A Juan Marzoa
%A Ana Abel
%A Sandra S�nchez
%A Hannah Chan
%A Ian Feavers
%A Mar�a Teresa Criado
%A Carlos M. Ferreir�s
%T Analysis of outer membrane porin complexes of Neisseria meningitidis in wild-type and specific knock-out mutant strains
%0 Journal Article
%D 2009
%J PROTEOMICS
%P 648-656
%V 9
%N 3
%U http://dx.doi.org/10.1002/pmic.200800486

%A S�lvia Barcel�-Batllori
%A Ramon Gomis
%T Proteomics in obesity research
%0 Journal Article
%D 2009
%J PROTEOMICS - CLINICAL APPLICATIONS
%P 263-278
%V 3
%N 2
%U http://dx.doi.org/10.1002/prca.200800178

%A Masaaki Oyama
%A Hiroko Kozuka-Hata
%A Shinya Tasaki
%A Kentaro Semba
%A Seisuke Hattori
%A Sumio Sugano
%A Jun-ichiro Inoue
%A Tadashi Yamamoto
%T Temporal Perturbation of Tyrosine Phosphoproteome Dynamics Reveals the System-wide Regulatory Networks
%0 Journal Article
%D 2009
%J Mol Cell Proteomics
%P 226-231
%V 8
%N 2
%U http://www.mcponline.org/cgi/content/abstract/8/2/226?etoc

%A Han Roelofsen
%A Martijn Dijkstra
%A Desiree Weening
%A Marcel P. de Vries
%A Annemieke Hoek
%A Roel J. Vonk
%T Comparison of Isotope-labeled Amino Acid Incorporation Rates (CILAIR) Provides a Quantitative Method to Study Tissue Secretomes
%0 Journal Article
%D 2009
%J Mol Cell Proteomics
%P 316-324
%V 8
%N 2
%U http://www.mcponline.org/cgi/content/abstract/8/2/316?etoc

%A Nils Gehlenborg
%A Wei Yan
%A Inyoul Y. Lee
%A Hyuntae Yoo
%A Kay Nieselt
%A Daehee Hwang
%A Ruedi Aebersold
%A Leroy Hood
%T Prequips--an extensible software platform for integration, visualization and analysis of LC-MS/MS proteomics data
%0 Journal Article
%D 2009
%J Bioinformatics
%P 682-683
%V 25
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%U http://dx.doi.org/10.1093/bioinformatics/btp005

%A Nett IR
%A Davidson L
%A Lamont D
%A Ferguson MA
%T Trypanosoma brucei: Identification and specific localization of tyrosine phosphorylated proteins
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%J Eukaryot Cell
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%8 Jan 30, 2009

%A Freeman WM
%A Vanguilder HD
%A Bennett C
%A Sonntag WE
%T Cognitive performance and age-related changes in the hippocampal proteome
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%D 2009
%J Neuroscience
%P 183-95
%V 159
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%U http://dx.doi.org/10.1016/j.neuroscience.2008.12.004

%A Noor Remmerie
%A Luc Roef
%A Eveline Van De Slijke
%A Jelle Van Leene
%A Geert Persiau
%A Dominique Eeckhout
%A Hilde Stals
%A Kris Laukens
%A Filip Lemi�re
%A Eddy Esmans
%A Harry Van Onckelen
%A Dirk Inz�
%A Geert De Jaeger
%A Erwin Witters
%T A bioanalytical method for the proteome wide display and analysis of protein complexes from whole plant cell lysates
%0 Journal Article
%D 2009
%J PROTEOMICS
%P 598-609
%V 9
%N 3
%U http://dx.doi.org/10.1002/pmic.200800100

%A Schmidt F
%A Schmid M
%A Thiede B
%A Pleiszner KP
%A Bohme M
%A Jungblut PR
%T Assembling proteomics data as a prerequisite for the analysis of large scale experiments
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%A Scott C. Russell
%T Microorganism characterization by single particle mass spectrometry
%0 Journal Article
%D 2009
%J Mass Spectrometry Reviews
%P 376-387
%V 28
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%U http://dx.doi.org/10.1002/mas.20198

%A Delaplace P
%A Fauconnier ML
%A Sergeant K
%A Dierick JF
%A Oufir M
%A van der Wal F
%A America AH
%A Renaut J
%A Hausman JF
%A du Jardin P
%T Potato (Solanum tuberosum L.) tuber ageing induces changes in the proteome and antioxidants associated with the sprouting pattern
%0 Journal Article
%D 2009
%J J Exp Bot
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%A Hattar R
%A Maller O
%A McDaniel S
%A Hansen KC
%A Hedman KJ
%A Lyons T
%A Lucia S
%A Wilson RS Jr
%A Schedin P
%T Tamoxifen induces pleiotrophic changes in mammary stroma resulting in extracellular matrix that suppresses transformed phenotypes
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%A Kluge B
%A Gambin A
%A Niemiro W
%T Modeling exopeptidase activity from LC-MS data
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%J J Comput Biol
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%A Browne F
%A Wang H
%A Zheng H
%A Azuaje F
%T GRIP: A web-based system for constructing Gold Standard datasets for protein-protein interaction prediction
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%A Wang XQ
%A Yang PF
%A Liu Z
%A Liu WZ
%A Hu Y
%A Chen H
%A Kuang TY
%A Pei ZM
%A Shen SH
%A He YK
%T Exploring the Mechanism of Physcomitrella patens Desiccation Tolerance through a Proteomic Strategy
%0 Journal Article
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%J Plant Physiol
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%8 Feb 11, 2009

%A Laura M. L�pez-S�nchez
%A Jordi Muntan�
%A Manuel de la Mata
%A Antonio Rodr�guez-Ariza
%T Unraveling the S-nitrosoproteome: Tools and strategies
%0 Journal Article
%D 2009
%J PROTEOMICS
%P 808-818
%V 9
%N 4
%U http://dx.doi.org/10.1002/pmic.200800546

%A Warren Albertin
%A Olivier Langella
%A Johann Joets
%A Luc N�groni
%A Michel Zivy
%A Catherine Damerval
%A Herv� Thiellement
%T Comparative proteomics of leaf, stem, and root tissues of synthetic Brassica napus
%0 Journal Article
%D 2009
%J PROTEOMICS
%P 793-799
%V 9
%N 3
%U http://dx.doi.org/10.1002/pmic.200800479

%A Madrid-Aliste CJ
%A Dybas JM
%A Hogue Angeletti R
%A Weiss LM
%A Kim K
%A Simon I
%A Fiser A
%T EPIC-DB: a proteomics database for studying Apicomplexan organisms
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%A Olga I. Tarzi
%A Hiroshi Nonami
%A Rosa Erra-Balsells
%T The effect of temperature on the stability of compounds used as UV-MALDI-MS matrix: 2,5-dihydroxybenzoic acid, 2,4,6-trihydroxyacetophenone, ?-cyano-4-hydroxycinnamic acid, 3,5-dimethoxy-4-hydroxycinnamic acid, nor-harmane and harmane
%0 Journal Article
%D 2009
%J Journal of Mass Spectrometry
%P 260-277
%V 44
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%U http://dx.doi.org/10.1002/jms.1506

%A Mark W. Duncan
%A Alfred L. Yergey
%A Scott D. Patterson
%T Quantifying proteins by mass spectrometry: The selectivity of SRM is only part of the problem
%0 Journal Article
%D 2009
%J PROTEOMICS
%P 1124-1127
%V 9
%N 5
%U http://dx.doi.org/10.1002/pmic.200800739

%A Meyer T
%A de la Cruz X
%A Orozco M
%T An atomistic view to the gas phase proteome
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%J Structure
%P 88-95
%V 17
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%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19141285&dopt=Abstract

%A Hansen JA
%T Genomic and proteomic analysis of allogeneic hematopoietic cell transplant outcome. Seeking greater understanding the pathogenesis of GVHD and mortality
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%J Biol Blood Marrow Transplant
%P e1-7
%V 15
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%A Zheng X
%A Wu SL
%A Hincapie M
%A Hancock WS
%T Study of the human plasma proteome of rheumatoid arthritis
%0 Journal Article
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%J J Chromatogr A
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%8 Jan 24, 2009

%A Philip Doran
%A Pamela Donoghue
%A Kathleen O'Connell
%A Joan Gannon
%A Kay Ohlendieck
%T Proteomics of skeletal muscle aging
%0 Journal Article
%D 2009
%J PROTEOMICS
%P 989-1003
%V 9
%N 4
%U http://dx.doi.org/10.1002/pmic.200800365

%A Li-Hua Lo
%A Tiao-Lai Huang
%A Jentaie Shiea
%T Acid hydrolysis followed by matrix-assisted laser desorption/ionization mass spectrometry for the rapid diagnosis of serum protein biomarkers in patients with major depression
%0 Journal Article
%D 2009
%J Rapid Communications in Mass Spectrometry
%P 589-598
%V 23
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%U http://dx.doi.org/10.1002/rcm.3908

%A Fran�ois-Thomas Michaud
%A Alain Garnier
%A Lise Lemieux
%A Carl Duchesne
%T Multivariate analysis of single quadrupole LC-MS spectra for routine characterization and quantification of intact proteins
%0 Journal Article
%D 2009
%J PROTEOMICS
%P 512-520
%V 9
%N 3
%U http://dx.doi.org/10.1002/pmic.200800300

%A Yun D
%A Lu H
%A Yang P
%A He F
%T Spectral quality assessment and application for gel-based matrix-assisted laser desorption ionization-time of flight tandem mass spectrometer
%0 Journal Article
%D 2009
%J Anal Chim Acta
%P 158-65
%V 634
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%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19185114&dopt=Abstract

%A Bulbul Chakravarti
%A Beerelli Seshi
%A Wongrat Ratanaprayul
%A Neville Dalal
%A Lawrence Lin
%A Alpan Raval
%A Deb N. Chakravarti
%T Proteome profiling of aging in mouse models: Differential expression of proteins involved in metabolism, transport, and stress response in kidney
%0 Journal Article
%D 2009
%J PROTEOMICS
%P 580-597
%V 9
%N 3
%U http://dx.doi.org/10.1002/pmic.200700208

%A Yu HR
%A Kuo HC
%A Sheen JM
%A Wang L
%A Lin IC
%A Wang CL
%A Yang KD
%T A unique plasma proteomic profiling with imbalanced fibrinogen cascade in patients with Kawasaki disease
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%J Pediatr Allergy Immunol
%P -
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%8 Jan 12, 2009

%A Bruno Almeida
%A Steffen Ohlmeier
%A Agostinho J. Almeida
%A Frank Madeo
%A Cec�lia Le�o
%A Fernando Rodrigues
%A Paula Ludovico
%T Yeast protein expression profile during acetic acid-induced apoptosis indicates causal involvement of the TOR pathway
%0 Journal Article
%D 2009
%J PROTEOMICS
%P 720-732
%V 9
%N 3
%U http://dx.doi.org/10.1002/pmic.200700816

%A Haffey WD
%A Mikhaylova O
%A Meller J
%A Yi Y
%A Greis KD
%A Czyzyk-Krzeska MF
%T iTRAQ proteomic identification of pVHL-dependent and -independent targets of Egln1 prolyl hydroxylase knockdown in renal carcinoma cells
%0 Journal Article
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%J Adv Enzyme Regul
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%8 Dec 31, 2008

%A Uemura N
%A Nakanishi Y
%A Kato H
%A Saito S
%A Nagino M
%A Hirohashi S
%A Kondo T
%T Transglutaminase 3 as a prognostic biomarker in esophageal cancer revealed by proteomics
%0 Journal Article
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%J Int J Cancer
%P 2106-15
%V 124
%N 9
%U http://dx.doi.org/10.1002/ijc.24194

%A Jadranka Milosevic
%A Patrick Bulau
%A Ejvind Mortz
%A Oliver Eickelberg
%T Subcellular fractionation of TGF-?1-stimulated lung epithelial cells: A novel proteomic approach for identifying signaling intermediates
%0 Journal Article
%D 2009
%J PROTEOMICS
%P 1230-1240
%V 9
%N 5
%U http://dx.doi.org/10.1002/pmic.200700604

%A Dheilly NM
%A Nair SV
%A Smith LC
%A Raftos DA
%T Highly variable immune-response proteins (185/333) from the sea urchin, Strongylocentrotus purpuratus: proteomic analysis identifies diversity within and between individuals
%0 Journal Article
%D 2009
%J J Immunol
%P 2203-12
%V 182
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%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19201874&dopt=Abstract

%A Alpert C
%A Scheel J
%A Engst W
%A Loh G
%A Blaut M
%T Adaptation of protein expression by Escherichia coli in the gastrointestinal tract of gnotobiotic mice
%0 Journal Article
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%J Environ Microbiol
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%8 Oct 21, 2008

%A Mollé D
%A Jardin J
%A Piot M
%A Pasco M
%A Léonil J
%A Gagnaire V
%T Comparison of electrospray and matrix-assisted laser desorption ionization on the same hybrid quadrupole time-of-flight tandem mass spectrometer Application to bidimensional liquid chromatography of proteins from bovine milk fraction
%0 Journal Article
%D 2009
%J J Chromatogr A
%P 2424-32
%V 1216
%N 12
%U http://dx.doi.org/10.1016/j.chroma.2009.01.017

%A Stephen J. Coales
%A Steven J. Tuske
%A Justine C. Tomasso
%A Yoshitomo Hamuro
%T Epitope mapping by amide hydrogen/deuterium exchange coupled with immobilization of antibody, on-line proteolysis, liquid chromatography and mass spectrometry
%0 Journal Article
%D 2009
%J Rapid Communications in Mass Spectrometry
%P 639-647
%V 23
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%U http://dx.doi.org/10.1002/rcm.3921

%A Negishi A
%A Ono M
%A Handa Y
%A Kato H
%A Yamashita K
%A Honda K
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%A Satow R
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%A Omura K
%A Hirohashi S
%A Yamada T
%T Large-scale quantitative clinical proteomics by label-free liquid chromatography and mass spectrometry
%0 Journal Article
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%J Cancer Sci
%P 514-9
%V 100
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%U http://dx.doi.org/10.1111/j.1349-7006.2008.01055.x

%A Liu B
%A Tewari AK
%A Zhang L
%A Green-Church KB
%A Zweier JL
%A Chen YR
%A He G
%T Proteomic analysis of protein tyrosine nitration after ischemia reperfusion injury: Mitochondria as the major target
%0 Journal Article
%D 2009
%J Biochim Biophys Acta
%P 476-85
%V 1794
%N 3
%U http://dx.doi.org/10.1016/j.bbapap.2008.12.008

%A Beyenbach KW
%A Baumgart S
%A Lau K
%A Piermarini PM
%A Zhang S
%T Signaling to the apical membrane and to the paracellular pathway: changes in the cytosolic proteome of Aedes Malpighian tubules
%0 Journal Article
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%J J Exp Biol
%P 329-40
%V 212
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%A Deborah Penque
%T Two-dimensional gel electrophoresis and mass spectrometry for biomarker discovery
%0 Journal Article
%D 2009
%J PROTEOMICS - CLINICAL APPLICATIONS
%P 155-172
%V 3
%N 2
%U http://dx.doi.org/10.1002/prca.200800025

%A Ke E
%A Patel BB
%A Liu T
%A Li XM
%A Haluszka O
%A Hoffman JP
%A Ehya H
%A Young NA
%A Watson JC
%A Weinberg DS
%A Nguyen MT
%A Cohen SJ
%A Meropol NJ
%A Litwin S
%A Tokar JL
%A Yeung AT
%T Proteomic Analyses of Pancreatic Cyst Fluids
%0 Journal Article
%D 2009
%J Pancreas
%P e33-42
%V 38
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%U http://dx.doi.org/10.1097/MPA.0b013e318193a08f

%A Becker C
%A Fernandez-Lima FA
%A Gillig KJ
%A Russell WK
%A Cologna SM
%A Russell DH
%T A Novel Approach to Collision-Induced Dissociation (CID) for Ion Mobility-Mass Spectrometry Experiments
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%J J Am Soc Mass Spectrom
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%8 Dec 9, 2008

%A Cui Y
%A Wu J
%A Zong M
%A Song G
%A Jia Q
%A Jiang J
%A Han J
%T Proteomic profiling in pancreatic cancer with and without lymph node metastasis
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%J Int J Cancer
%P 1614-21
%V 124
%N 7
%U http://dx.doi.org/10.1002/ijc.24163

%A Merrell K
%A Thulin CD
%A Esplin MS
%A Graves SW
%T Systematic internal standard selection for capillary liquid chromatography-mass spectrometry time normalization to facilitate serum proteomics
%0 Journal Article
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%J J Biomol Tech
%P 320-7
%V 19
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%A Patrik Ek
%A Tommy Sch�nberg
%A Johan Sj�dahl
%A Johan Jacks�n
%A Christian Vieider
%A �sa Emmer
%A Johan Roeraade
%T Electrospray ionization from an adjustable gap between two silicon chips
%0 Journal Article
%D 2009
%J Journal of Mass Spectrometry
%P 171-181
%V 44
%N 2
%U http://dx.doi.org/10.1002/jms.1478

%A Indranil Chatterjee
%A Sigrid Schmitt
%A Christoph F. Batzilla
%A Susanne Engelmann
%A Andreas Keller
%A Michael W. Ring
%A Ralf Kautenburger
%A Wilma Ziebuhr
%A Michael Hecker
%A Klaus T. Preissner
%A Markus Bischoff
%A Richard A. Proctor
%A Horst P. Beck
%A Hans-Peter Lenhof
%A Gr
%T Staphylococcus aureus ClpC ATPase is a late growth phase effector of metabolism and persistence
%0 Journal Article
%D 2009
%J PROTEOMICS
%P 1152-1176
%V 9
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%U http://dx.doi.org/10.1002/pmic.200800586

%A Shen LF
%A Cheng H
%A Tsai MC
%A Kuo HS
%A Chak KF
%T PAL31 may play an important role as inflammatory modulator in the repair process of the spinal cord injury rat
%0 Journal Article
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%J J Neurochem
%P -
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%8 Dec 26, 2008

%A Hattori N
%A Oda S
%A Sadahiro T
%A Nakamura M
%A Abe R
%A Shinozaki K
%A Nomura F
%A Tomonaga T
%A Matsushita K
%A Kodera Y
%A Sogawa K
%A Satoh M
%A Hirasawa H
%T YKL-40 identified by proteomic analysis as a biomarker of sepsis
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%J Shock
%P -
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%8 Feb 2, 2009

%A Cristina Banfi
%A Maura Brioschi
%A Simona Barcella
%A Robin Wait
%A Shajna Begum
%A Sabrina Galli
%A Andrea Rizzi
%A Elena Tremoli
%T Proteomic analysis of human low-density lipoprotein reveals the presence of prenylcysteine lyase, a hydrogen peroxide-generating enzyme
%0 Journal Article
%D 2009
%J PROTEOMICS
%P 1344-1352
%V 9
%N 5
%U http://dx.doi.org/10.1002/pmic.200800566

%A Aldrin V. Gomes
%A Glen W. Young
%A Yueju Wang
%A Chenggong Zong
%A Mansoureh Eghbali
%A Oliver Drews
%A Haojie Lu
%A Enrico Stefani
%A Peipei Ping
%T Contrasting Proteome Biology and Functional Heterogeneity of the 20 S Proteasome Complexes in Mammalian Tissues
%0 Journal Article
%D 2009
%J Mol Cell Proteomics
%P 302-315
%V 8
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%U http://www.mcponline.org/cgi/content/abstract/8/2/302?etoc

%A Manfred Wuhrer
%A Arjen R. de Boer
%A Andr� M. Deelder
%T Structural glycomics using hydrophilic interaction chromatography (HILIC) with mass spectrometry
%0 Journal Article
%D 2009
%J Mass Spectrometry Reviews
%P 192-206
%V 28
%N 2
%U http://dx.doi.org/10.1002/mas.20195

%A Tarasova IA
%A Guryča V
%A Pridatchenko ML
%A Gorshkov AV
%A Kieffer-Jaquinod S
%A Evreinov VV
%A Masselon CD
%A Gorshkov MV
%T Standardization of retention time data for AMT tag proteomics database generation
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%J J Chromatogr B Analyt Technol Biomed Life Sci
%P -
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%8 Dec 25, 2008

%A Om V. Singh
%A Myron Yaster
%A Ji-Tian Xu
%A Yun Guan
%A Xiaowei Guan
%A Arun M. Dharmarajan
%A Srinivasa N. Raja
%A Pamela L. Zeitlin
%A Yuan-Xiang Tao
%T Proteome of synaptosome-associated proteins in spinal cord dorsal horn after peripheral nerve injury
%0 Journal Article
%D 2009
%J PROTEOMICS
%P 1241-1253
%V 9
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%U http://dx.doi.org/10.1002/pmic.200800636

%A Ye X
%A Luke B
%A Andresson T
%A Blonder J
%T 18O Stable Isotope Labeling in MS-based Proteomics
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%J Brief Funct Genomic Proteomic
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%8 Jan 16, 2009

%A Young Hye Kim
%A Jin Young Kim
%A Se-Young Kim
%A Jeong Hwa Lee
%A Jin Suk Lee
%A Young-Ho Chung
%A Jong Shin Yoo
%A Young Mok Park
%T Alteration in the glycan pattern of pilin in a nonmotile mutant of Synechocystis sp. PCC 6803
%0 Journal Article
%D 2009
%J PROTEOMICS
%P 1075-1086
%V 9
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%U http://dx.doi.org/10.1002/pmic.200800372

%A Jussi Salmi
%A Tuula A. Nyman
%A Olli S. Nevalainen
%A Tero Aittokallio
%T Filtering strategies for improving protein identification in high-throughput MS/MS studies
%0 Journal Article
%D 2009
%J PROTEOMICS
%P 848-860
%V 9
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%U http://dx.doi.org/10.1002/pmic.200800517

%A Andrew R. Jones
%A Jennifer A. Siepen
%A Simon J. Hubbard
%A Norman W. Paton
%T Improving sensitivity in proteome studies by analysis of false discovery rates for multiple search engines
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%D 2009
%J PROTEOMICS
%P 1220-1229
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%U http://dx.doi.org/10.1002/pmic.200800473

%A Kottapalli KR
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%A Shibato J
%A Burow G
%A Tissue D
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%T Physiology and proteomics of the water-deficit stress response in three contrasting peanut genotypes
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%J Plant Cell Environ
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%8 Jan 2, 2009

%A Kazuhiro Sonomura
%A Hiroki Kuyama
%A Ei-ichi Matsuo
%A Susumu Tsunasawa
%A Osamu Nishimura
%T The specific isolation of C-terminal peptides of proteins through a transamination reaction and its advantage for introducing functional groups into the peptide
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%J Rapid Communications in Mass Spectrometry
%P 611-618
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%U http://dx.doi.org/10.1002/rcm.3920

%A Kiel JA
%A van den Berg MA
%A Fusetti F
%A Poolman B
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%T Matching the proteome to the genome: the microbody of penicillin-producing Penicillium chrysogenum cells
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%J Funct Integr Genomics
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%8 Jan 21, 2009

%A Liu X
%A Zeng B
%A Ma J
%A Wan C
%T Comparative Proteomic Analysis of Osteosarcoma Cell and Human Primary Cultured Osteoblastic Cell
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%J Cancer Invest
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%8 Feb 12, 2009

%A Jiang H
%A Guan G
%A Zhang R
%A Liu G
%A Cheng J
%A Hou X
%A Cui Y
%T Identification of urinary soluble E-cadherin as a novel biomarker for diabetic nephropathy
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%J Diabetes Metab Res Rev
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%A Paczesny S
%A Levine JE
%A Braun TM
%A Ferrara JL
%T Plasma biomarkers in graft-versus-host disease: a new era?
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%J Biol Blood Marrow Transplant
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%A Ziyou Cui
%A Xiulan Chen
%A Bingwen Lu
%A Sung Kyu Park
%A Tao Xu
%A Zhensheng Xie
%A Peng Xue
%A Junjie Hou
%A Haiying Hang
%A John R. Yates III
%A Fuquan Yang
%T Preliminary quantitative profile of differential protein expression between rat L6 myoblasts and myotubes by stable isotope labeling with amino acids in cell culture
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%J PROTEOMICS
%P 1274-1292
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%U http://dx.doi.org/10.1002/pmic.200800354

%A Joseph Zaia
%T On-line separations combined with MS for analysis of glycosaminoglycans
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%J Mass Spectrometry Reviews
%P 254-272
%V 28
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%U http://dx.doi.org/10.1002/mas.20200

%A Frank J. Berendt
%A Thomas Fr�hlich
%A Patrick Bolbrinker
%A Marc Boelhauve
%A Tuna G�ng�r
%A Felix A. Habermann
%A Eckhard Wolf
%A Georg J. Arnold
%T Highly sensitive saturation labeling reveals changes in abundance of cell cycle-associated proteins and redox enzyme variants during oocyte maturation in vitro
%0 Journal Article
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%J PROTEOMICS
%P 550-564
%V 9
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%U http://dx.doi.org/10.1002/pmic.200700417

%A Francesconi A
%A Kumari R
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%T Proteomic analysis reveals novel binding partners of metabotropic glutamate receptor 1
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%J J Neurochem
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%8 Jan 22, 2009

%A Sfanos KS
%A Wilson BA
%A De Marzo AM
%A Isaacs WB
%T Acute inflammatory proteins constitute the organic matrix of prostatic corpora amylacea and calculi in men with prostate cancer
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%J Proc Natl Acad Sci U S A
%P 3443-8
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%U http://dx.doi.org/10.1073/pnas.0810473106

%A Wright JC
%A Sugden D
%A Francis-McIntyre S
%A Riba-Garcia I
%A Gaskell SJ
%A Grigoriev IV
%A Baker SE
%A Beynon RJ
%A Hubbard SJ
%T Exploiting proteomic data for genome annotation and gene model validation in Aspergillus niger
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%A Chary L�pez-Pedrera
%A Nuria Barbarroja
%A Jose Manuel Villalba
%T Novel biomarkers of atherosclerosis and cardiovascular risk in autoimmune diseases: Genomics and proteomics approaches
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%J PROTEOMICS - CLINICAL APPLICATIONS
%P 213-225
%V 3
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%U http://dx.doi.org/10.1002/prca.200800147

%A Beeby M
%A Bobik TA
%A Yeates TO
%T Exploiting genomic patterns to discover new supramolecular protein assemblies
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%J Protein Sci
%P 69-79
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%A Emilio Camafeita
%A Jos� Ram�n Lamas
%A Enrique Calvo
%A Juan Antonio L�pez
%A Benjam�n Fern�ndez-Guti�rrez
%T Proteomics: New insights into rheumatic diseases
%0 Journal Article
%D 2009
%J PROTEOMICS - CLINICAL APPLICATIONS
%P 226-241
%V 3
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%U http://dx.doi.org/10.1002/prca.200800146

%A Christopher Reynolds
%A David Damerell
%A Susan Jones
%T ProtorP: a protein-protein interaction analysis server
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%J Bioinformatics
%P 413-414
%V 25
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%U http://dx.doi.org/10.1093/bioinformatics/btn584

%A Miyamoto K
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%A Ikebayashi S
%A Tsuchiya T
%A Yamamoto S
%A Tsujibo H
%T Proteomic analysis of Vibrio vulnificus M2799 grown under iron-repleted and iron-depleted conditions
%0 Journal Article
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%J Microb Pathog
%P 171-7
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%U http://dx.doi.org/10.1016/j.micpath.2008.12.004

%A Tomasz B?czek
%A Roman Kaliszan
%T Predictions of peptides' retention times in reversed-phase liquid chromatography as a new supportive tool to improve protein identification in proteomics
%0 Journal Article
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%J PROTEOMICS
%P 835-847
%V 9
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%U http://dx.doi.org/10.1002/pmic.200800544

%A Ming-Kuem Lin
%A Young-Jin Lee
%A Tony J. Lough
%A Brett S. Phinney
%A William J. Lucas
%T Analysis of the Pumpkin Phloem Proteome Provides Insights into Angiosperm Sieve Tube Function
%0 Journal Article
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%J Mol Cell Proteomics
%P 343-356
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%U http://www.mcponline.org/cgi/content/abstract/8/2/343?etoc

%A Hector S
%A Prehn JH
%T Apoptosis signaling proteins as prognostic biomarkers in colorectal cancer: A review
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%J Biochim Biophys Acta
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%8 Jan 6, 2009

%A Junmei Zhang
%A Robert Sprung
%A Jimin Pei
%A Xiaohong Tan
%A Sungchan Kim
%A Heng Zhu
%A Chuan-Fa Liu
%A Nick V. Grishin
%A Yingming Zhao
%T Lysine Acetylation Is a Highly Abundant and Evolutionarily Conserved Modification in Escherichia Coli
%0 Journal Article
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%J Mol Cell Proteomics
%P 215-225
%V 8
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%U http://www.mcponline.org/cgi/content/abstract/8/2/215?etoc

%A Lindermayr C
%A Sell S
%A Durner J
%T Generation and detection of S-nitrosothiols
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%A Davide Bolchini
%A Anthony Finkelstein
%A Vito Perrone
%A Sylvia Nagl
%T Better bioinformatics through usability analysis
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%J Bioinformatics
%P 406-412
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%U http://dx.doi.org/10.1093/bioinformatics/btn633

%A Lu ZJ
%A Song QF
%A Jiang SS
%A Song Q
%A Wang W
%A Zhang GH
%A Kan B
%A Chen LJ
%A Yang JL
%A Luo F
%A Qian ZY
%A Wei YQ
%A Gou LT
%T Identification of ATP synthase beta subunit (ATPB) on the cell surface as a non-small cell lung cancer (NSCLC) associated antigen
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%A Feng B
%A Li L
%A Zhou X
%A Stanley B
%A Ma H
%T Analysis of the Arabidopsis floral proteome: detection of over 2 000 proteins and evidence for posttranslational modifications
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%P 207-23
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%A Chauhan N
%T Preparation of Samples for Proteomic Analysis of the Candida albicans Cell Wall
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%J Methods Mol Biol
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%A Jagannathan J
%A Li J
%A Szerlip N
%A Vortmeyer AO
%A Lonser RR
%A Oldfield EH
%A Zhuang Z
%T Application and implementation of selective tissue microdissection and proteomic profiling in neurological disease
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%J Neurosurgery
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%A Nickerson P
%A Heeger PS
%T Proteomic Portrayal of Transplant Pathologies
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%U http://dx.doi.org/10.1681/ASN.2008121243

%A Trost M
%A English L
%A Lemieux S
%A Courcelles M
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%T The phagosomal proteome in interferon-gamma-activated macrophages
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%J Immunity
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%A Thambisetty M
%A Hye A
%A Foy C
%A Daly E
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%A Murphy D
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%T Proteome-based identification of plasma proteins associated with hippocampal metabolism in early Alzheimer's disease
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%J J Neurol
%P 1712-20
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%A Feldman AS
%A Banyard J
%A Wu CL
%A McDougal WS
%A Zetter BR
%T Cystatin B as a tissue and urinary biomarker of bladder cancer recurrence and disease progression
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%A Petr Lokhov
%A Elena Balashova
%A Maxim Dashtiev
%T Cell proteomic footprint
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%J Rapid Communications in Mass Spectrometry
%P 680-682
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%U http://dx.doi.org/10.1002/rcm.3928

%A Faça VM
%A Hanash SM
%T In-Depth Proteomics to Define the Cell Surface and Secretome of Ovarian Cancer Cells and Processes of Protein Shedding
%0 Journal Article
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%J Cancer Res
%P 728-30
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%U http://dx.doi.org/10.1158/0008-5472.CAN-08-3087

%A Heckel T
%A Czupalla C
%A Expirto Santo AI
%A Anitei M
%A Sanchez-Fernandez MA
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%A Krause E
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%T Src-dependent repression of ARF6 is required to maintain podosome-rich sealing zones in bone-digesting osteoclasts
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%J Proc Natl Acad Sci U S A
%P 1451-6
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%U http://dx.doi.org/10.1073/pnas.0804464106

%A Hao Yu
%A Yan Meng
%A Li-Shun Wang
%A Xian Jin
%A Li-Fang Gao
%A Lei Zhou
%A Kun Ji
%A Yang Li
%A Li-Juan Zhao
%A Guo-Qiang Chen
%A Xue-Jian Zhao
%A Baoxue Yang
%T Differential protein expression in heart in UT-B null mice with cardiac conduction defects
%0 Journal Article
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%J PROTEOMICS
%P 504-511
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%U http://dx.doi.org/10.1002/pmic.200701079

%A Ping P
%T Getting to the heart of proteomics
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%J N Engl J Med
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%A Kathleen A. J. Sonck
%A Gwendoline Kint
%A Geert Schoofs
%A Corinne Vander Wauven
%A Jos Vanderleyden
%A Sigrid C. J. De Keersmaecker
%T The proteome of Salmonella Typhimurium grown under in vivo-mimicking conditions
%0 Journal Article
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%J PROTEOMICS
%P 565-579
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%U http://dx.doi.org/10.1002/pmic.200700476

%A Fisher MC
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%A Yin Z
%A Stead DA
%A Walker J
%A Selway L
%A Brown AJ
%A Walker LA
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%A Stajich JE
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%T Proteomic and phenotypic profiling of the amphibian pathogen Batrachochytrium dendrobatidis shows that genotype is linked to virulence
%0 Journal Article
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%J Mol Ecol
%P 415-429
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%A Mathur BN
%A Caprioli RM
%A Deutch AY
%T Proteomic Analysis Illuminates a Novel Structural Definition of the Claustrum and Insula
%0 Journal Article
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%J Cereb Cortex
%P -
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%N 
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%8 Jan 23, 2009

%A Carolin Huhn
%A Maurice H. J. Selman
%A L. Renee Ruhaak
%A Andr� M. Deelder
%A Manfred Wuhrer
%T IgG glycosylation analysis
%0 Journal Article
%D 2009
%J PROTEOMICS
%P 882-913
%V 9
%N 4
%U http://dx.doi.org/10.1002/pmic.200800715

%A Magherini F
%A Carpentieri A
%A Amoresano A
%A Gamberi T
%A De Filippo C
%A Rizzetto L
%A Biagini M
%A Pucci P
%A Modesti A
%T Different carbon sources affect lifespan and protein redox state during Saccharomyces cerevisiae chronological ageing
%0 Journal Article
%D 2009
%J Cell Mol Life Sci
%P 933-47
%V 66
%N 5
%U http://dx.doi.org/10.1007/s00018-009-8574-z

%A Thijs R. H. M. Kouwen
%A Haike Antelmann
%A Ren� van der Ploeg
%A Emma L. Denham
%A Michael Hecker
%A Jan Maarten van Dijl
%T MscL of Bacillus subtilis prevents selective release of cytoplasmic proteins in a hypotonic environment
%0 Journal Article
%D 2009
%J PROTEOMICS
%P 1033-1043
%V 9
%N 4
%U http://dx.doi.org/10.1002/pmic.200800483

%A Rubin O
%A Crettaz D
%A Canellini G
%A Tissot JD
%A Lion N
%T Microparticles in stored red blood cells: an approach using flow cytometry and proteomic tools
%0 Journal Article
%D 2008
%J Vox Sang
%P 288-97
%V 95
%N 4
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%A Pieper R
%A Huang ST
%A Robinson JM
%A Clark DJ
%A Alami H
%A Parmar PP
%A Perry RD
%A Fleischmann RD
%A Peterson SN
%T Temperature and growth phase influence the outer-membrane proteome and the expression of a type VI secretion system in Yersinia pestis
%0 Journal Article
%D 2009
%J Microbiology
%P 498-512
%V 155
%N Pt 2
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19202098&dopt=Abstract

%A G�rard Hopfgartner
%A Emmanuel Varesio
%A Markus Stoeckli
%T Matrix-assisted laser desorption/ionization mass spectrometric imaging of complete rat sections using a triple quadrupole linear ion trap
%0 Journal Article
%D 2009
%J Rapid Communications in Mass Spectrometry
%P 733-736
%V 23
%N 6
%U http://dx.doi.org/10.1002/rcm.3934

%A Jamie Sherman
%A Matthew J. McKay
%A Keith Ashman
%A Mark P. Molloy
%T How specific is my SRM?: The issue of precursor and product ion redundancy
%0 Journal Article
%D 2009
%J PROTEOMICS
%P 1120-1123
%V 9
%N 5
%U http://dx.doi.org/10.1002/pmic.200800577

%A Zheng YZ
%A Berg KB
%A Foster LJ
%T Mitochondria do not contain lipid rafts and lipid rafts do not contain mitochondrial proteins
%0 Journal Article
%D 2009
%J J Lipid Res
%P -
%V 
%N 
%U http://dx.doi.org/10.1194/jlr.M800658-JLR200
%8 Jan 9, 2009

%A Sarkar A
%A Agrawal SB
%T Identification of ozone stress in Indian rice through foliar injury and differential protein profile
%0 Journal Article
%D 2009
%J Environ Monit Assess
%P -
%V 
%N 
%U http://dx.doi.org/10.1007/s10661-008-0738-z
%8 Jan 30, 2009

%A Adriana F. Paes Leme
%A Eduardo S. Kitano
%A Maria F. Furtado
%A Richard H. Valente
%A Antonio C. M. Camargo
%A Paulo L. Ho
%A Jay W. Fox
%A Solange M. T. Serrano
%T Analysis of the subproteomes of proteinases and heparin-binding toxins of eight Bothrops venoms
%0 Journal Article
%D 2009
%J PROTEOMICS
%P 733-745
%V 9
%N 3
%U http://dx.doi.org/10.1002/pmic.200800484

%A Schindler J
%A Nothwang HG
%T Enrichment of brain plasma membranes by affinity two-phase partitioning
%0 Journal Article
%D 2009
%J Methods Mol Biol
%P 119-26
%V 528
%N 
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%A Morciano M
%A Beckhaus T
%A Karas M
%A Zimmermann H
%A Volknandt W
%T The proteome of the presynaptic active zone: from docked synaptic vesicles to adhesion molecules and maxi-channels
%0 Journal Article
%D 2009
%J J Neurochem
%P 662-75
%V 108
%N 3
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19187093&dopt=Abstract

%A Bijon Chatterji
%A J�rgen Borlak
%T A 2-DE MALDI-TOF study to identify disease regulated serum proteins in lung cancer of c-myc transgenic mice
%0 Journal Article
%D 2009
%J PROTEOMICS
%P 1044-1056
%V 9
%N 4
%U http://dx.doi.org/10.1002/pmic.200701135

%A Qing-Yi Lu
%A Yanan Yang
%A Yu Sheng Jin
%A Zuo-Feng Zhang
%A David Heber
%A Frederick P. Li
%A Steven M. Dubinett
%A Melissa A. Sondej
%A Joseph A. Loo
%A Jian Yu Rao
%T Effects of green tea extract on lung cancer A549 cells: Proteomic identification of proteins associated with cell migration
%0 Journal Article
%D 2009
%J PROTEOMICS
%P 757-767
%V 9
%N 3
%U http://dx.doi.org/10.1002/pmic.200800019

%A Jennifer J. Hill
%A Maria J. Moreno
%A Jean C. Y. Lam
%A Arsalan S. Haqqani
%A John F. Kelly
%T Identification of secreted proteins regulated by cAMP in glioblastoma cells using glycopeptide capture and label-free quantification
%0 Journal Article
%D 2009
%J PROTEOMICS
%P 535-549
%V 9
%N 3
%U http://dx.doi.org/10.1002/pmic.200800257

%A Andrea Scaloni
%A Erika Codarin
%A Vittorio Di Maso
%A Simona Arena
%A Giovanni Renzone
%A Claudio Tiribelli
%A Franco Quadrifoglio
%A Gianluca Tell
%T Modern strategies to identify new molecular targets for the treatment of liver diseases: The promising role of Proteomics and Redox Proteomics investigations
%0 Journal Article
%D 2009
%J PROTEOMICS - CLINICAL APPLICATIONS
%P 242-262
%V 3
%N 2
%U http://dx.doi.org/10.1002/prca.200800169

%A Gudlavalleti SK
%A Sundaram AK
%A Razumovski J
%A Doroshenko V
%T Application of atmospheric pressure matrix-assisted laser desorption/ionization mass spectrometry for rapid identification of Neisseria species
%0 Journal Article
%D 2008
%J J Biomol Tech
%P 200-4
%V 19
%N 3
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19137107&dopt=Abstract

%A Jasmin Kemptner
%A Martina Marchetti-Deschmann
%A Robert Mach
%A Irina S. Druzhinina
%A Christian P. Kubicek
%A G�nter Allmaier
%T Evaluation of matrix-assisted laser desorption/ionization (MALDI) preparation techniques for surface characterization of intact Fusarium spores by MALDI linear time-of-flight mass spectrometry
%0 Journal Article
%D 2009
%J Rapid Communications in Mass Spectrometry
%P 877-884
%V 23
%N 6
%U http://dx.doi.org/10.1002/rcm.3949

%A Weiwei Wu
%A Heidi Slastad
%A Daniel de la Rosa Carrillo
%A Tom Frey
%A Geir Tjonnfjord
%A Eva Boretti
%A Hans-Christian Aasheim
%A Vaclav Horejsi
%A Fridtjof Lund-Johansen
%T Antibody Array Analysis with Label-based Detection and Resolution of Protein Size
%0 Journal Article
%D 2009
%J Mol Cell Proteomics
%P 245-257
%V 8
%N 2
%U http://www.mcponline.org/cgi/content/abstract/8/2/245?etoc

%A Matthias Pl�scher
%A Bernhard Granvogl
%A Mikael Zoryan
%A Veronika Reisinger
%A Lutz Andreas Eichacker
%T Mass spectrometric characterization of membrane integral low molecular weight proteins from photosystem II in barley etioplasts
%0 Journal Article
%D 2009
%J PROTEOMICS
%P 625-635
%V 9
%N 3
%U http://dx.doi.org/10.1002/pmic.200800337

%A Philip Doran
%A Steve D. Wilton
%A Sue Fletcher
%A Kay Ohlendieck
%T Proteomic profiling of antisense-induced exon skipping reveals reversal of pathobiochemical abnormalities in dystrophic mdx diaphragm
%0 Journal Article
%D 2009
%J PROTEOMICS
%P 671-685
%V 9
%N 3
%U http://dx.doi.org/10.1002/pmic.200800441

%A Evgeniy V. Petrotchenko
%A Kunhong Xiao
%A Jennifer Cable
%A Yiwen Chen
%A Nikolay V. Dokholyan
%A Christoph H. Borchers
%T BiPS, a Photocleavable, Isotopically Coded, Fluorescent Cross-linker for Structural Proteomics
%0 Journal Article
%D 2009
%J Mol Cell Proteomics
%P 273-286
%V 8
%N 2
%U http://www.mcponline.org/cgi/content/abstract/8/2/273?etoc

%A Martina Stessl
%A Christian R. Noe
%A Bodo Lachmann
%T Influence of image-analysis software on quantitation of two-dimensional gel electrophoresis data
%0 Journal Article
%D 2009
%J ELECTROPHORESIS
%P 325-328
%V 30
%N 2
%U http://dx.doi.org/10.1002/elps.200800213

%A Daniel Schwartz
%A Michael F. Chou
%A George M. Church
%T Predicting Protein Post-translational Modifications Using Meta-analysis of Proteome Scale Data Sets
%0 Journal Article
%D 2009
%J Mol Cell Proteomics
%P 365-379
%V 8
%N 2
%U http://www.mcponline.org/cgi/content/abstract/8/2/365?etoc

%A He J
%A Huang C
%A Tong A
%A Chen B
%A Zeng Z
%A Zhang P
%A Wang C
%A Wei Y
%T Proteomic analysis of cervical cancer cells treated with suberonylanilide hydroxamic acid
%0 Journal Article
%D 2008
%J J Biosci
%P 715-21
%V 33
%N 5
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%A Yang MX
%A Liu ZX
%A Zhang S
%A Jing Y
%A Zhang SJ
%A Xie WP
%A Ma L
%A Zhu CL
%A Wang H
%T Proteomic analysis of the effect of iptakalim on human pulmonary arterial smooth muscle cell proliferation
%0 Journal Article
%D 2009
%J Acta Pharmacol Sin
%P 175-83
%V 30
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%U http://dx.doi.org/10.1038/aps.2008.30

%A Mathias RA
%A Lim JW
%A Ji H
%A Simpson RJ
%T Isolation of extracellular membranous vesicles for proteomic analysis
%0 Journal Article
%D 2009
%J Methods Mol Biol
%P 227-42
%V 528
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%A Wepf A
%A Glatter T
%A Schmidt A
%A Aebersold R
%A Gstaiger M
%T Quantitative interaction proteomics using mass spectrometry
%0 Journal Article
%D 2009
%J Nat Methods
%P 203-5
%V 6
%N 3
%U http://dx.doi.org/10.1038/nmeth.1302

%A Jimenez N
%A Lacasta A
%A Vilches S
%A Reyes M
%A Vazquez J
%A Aquillini E
%A Merino S
%A Regué M
%A Tomás JM
%T Genetics and proteomics of Aeromonas salmonicida Lipopolysaccharide Core Biosynthesis
%0 Journal Article
%D 2009
%J J Bacteriol
%P -
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%8 Jan 16, 2009

%A Salvi A
%A Bongarzone I
%A Miccichè F
%A Arici B
%A Barlati S
%A De Petro G
%T Proteomic Identification of LASP-1 Down-regulation After RNAi Urokinase Silencing in Human Hepatocellular Carcinoma Cells
%0 Journal Article
%D 2009
%J Neoplasia
%P 207-19
%V 11
%N 2
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19177205&dopt=Abstract

%A David Goldberg
%A Marshall Bern
%A Simon J. North
%A Stuart M. Haslam
%A Anne Dell
%T Glycan family analysis for deducing N-glycan topology from single MS
%0 Journal Article
%D 2009
%J Bioinformatics
%P 365-371
%V 25
%N 3
%U http://dx.doi.org/10.1093/bioinformatics/btn636

%A Stanley M. Jeram
%A Tharan Srikumar
%A Patrick G. A. Pedrioli
%A Brian Raught
%T Using mass spectrometry to identify ubiquitin and ubiquitin-like protein conjugation sites
%0 Journal Article
%D 2009
%J PROTEOMICS
%P 922-934
%V 9
%N 4
%U http://dx.doi.org/10.1002/pmic.200800666

%A Tiesen Cao
%A Yong Min Kim
%A Nat N. V. Kav
%A Stephen E. Strelkov
%T A proteomic evaluation of Pyrenophora tritici-repentis, causal agent of tan spot of wheat, reveals major differences between virulent and avirulent isolates
%0 Journal Article
%D 2009
%J PROTEOMICS
%P 1177-1196
%V 9
%N 5
%U http://dx.doi.org/10.1002/pmic.200800475

%A Fumin Li
%A Claire M. Schmerberg
%A Q. C. Ji
%T Accelerated tryptic digestion of proteins in plasma for absolute quantitation using a protein internal standard by liquid chromatography/tandem mass spectrometry
%0 Journal Article
%D 2009
%J Rapid Communications in Mass Spectrometry
%P 729-732
%V 23
%N 5
%U http://dx.doi.org/10.1002/rcm.3926

%A Sun Tae Kim
%A Young Hyun Kang
%A Yiming Wang
%A Jingni Wu
%A Zee Yong Park
%A Randeep Rakwal
%A Ganesh Kumar Agrawal
%A Sang Yeol Lee
%A Kyu Young Kang
%T Secretome analysis of differentially induced proteins in rice suspension-cultured cells triggered by rice blast fungus and elicitor
%0 Journal Article
%D 2009
%J PROTEOMICS
%P 1302-1313
%V 9
%N 5
%U http://dx.doi.org/10.1002/pmic.200800589

%A Jennifer A. Mead
%A Luca Bianco
%A Conrad Bessant
%T Recent developments in public proteomic MS repositories and pipelines
%0 Journal Article
%D 2009
%J PROTEOMICS
%P 861-881
%V 9
%N 4
%U http://dx.doi.org/10.1002/pmic.200800553

%A Zhang H
%A Lian C
%A Shen Z
%T Proteomic identification of small, copper-responsive proteins in germinating embryos of Oryza sativa
%0 Journal Article
%D 2009
%J Ann Bot (Lond)
%P -
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%N 
%U http://dx.doi.org/10.1093/aob/mcp012
%8 Feb 5, 2009

%A Lee JY
%A Byun JY
%A Lee SH
%T Proteomic analysis of normal human nasal mucosa: Establishment of a two-dimensional electrophoresis reference map
%0 Journal Article
%D 2009
%J Clin Biochem
%P -
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%8 Jan 8, 2009

%A Yehia Mechref
%A Milos V. Novotny
%T Glycomic analysis by capillary electrophoresis-mass spectrometry
%0 Journal Article
%D 2009
%J Mass Spectrometry Reviews
%P 207-222
%V 28
%N 2
%U http://dx.doi.org/10.1002/mas.20196

%A M. Estela del Castillo Busto
%A Juris Meija
%A Mar�a Montes-Bay�n
%A Alfredo Sanz-Medel
%T Diophantine analysis complements electrospray-Q-TOF data for structure elucidation of transferrin glycoforms used for clinical diagnosis in human serum and cerebrospinal fluid
%0 Journal Article
%D 2009
%J PROTEOMICS
%P 1109-1113
%V 9
%N 4
%U http://dx.doi.org/10.1002/pmic.200701182

%A Merrick BA
%A Witzmann FA
%T The role of toxicoproteomics in assessing organ specific toxicity
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%D 2009
%J EXS
%P 367-400
%V 99
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%A Sandra Orchard
%A Christine Hoogland
%A Amos Bairoch
%A Martin Eisenacher
%A Hans-Joachim Kraus
%A Pierre-Alain Binz
%T Managing the Data Explosion A Report on the HUPO-PSI Workshop August 2008, Amsterdam, The Netherlands
%0 Journal Article
%D 2009
%J PROTEOMICS
%P 499-501
%V 9
%N 3
%U http://dx.doi.org/10.1002/pmic.200800838

%A Wilson CR
%A Regnier FE
%A Knapp DW
%A Raskin RE
%A Andrews DA
%A Hooser SB
%T Glycoproteomic profiling of serum peptides in canine lymphoma and transitional cell carcinoma
%0 Journal Article
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%J Vet Comp Oncol
%P 171-81
%V 6
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%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19178677&dopt=Abstract

%A Schubert D
%A Herrera F
%A Cumming R
%A Read J
%A Low W
%A Maher P
%A Fischer WH
%T NEURAL CELLS SECRETE A UNIQUE REPERTOIRE OF PROTEINS
%0 Journal Article
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%J J Neurochem
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%8 Feb 7, 2009

%A Bauer B
%A Davidson M
%A Orwar O
%T Proteomic Analysis of Plasma Membrane Vesicles
%0 Journal Article
%D 2009
%J Angew Chem Int Ed Engl
%P 1656-9
%V 48
%N 9
%U http://dx.doi.org/10.1002/anie.200803898

%A Lakshman DK
%A Natarajan SS
%A Lakshman S
%A Garrett WM
%A Dhar AK
%T Optimized protein extraction methods for proteomic analysis of Rhizoctonia solani
%0 Journal Article
%D 2008
%J Mycologia
%P 867-75
%V 100
%N 6
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19202841&dopt=Abstract

%A Robert J. Caiazzo Jr.
%A Andrew J. Maher
%A Michael P. Drummond
%A Corey I. Lander
%A Oliver W. Tassinari
%A Bryce P. Nelson
%A Brian C.-S. Liu
%T Protein microarrays as an application for disease biomarkers
%0 Journal Article
%D 2009
%J PROTEOMICS - CLINICAL APPLICATIONS
%P 138-147
%V 3
%N 2
%U http://dx.doi.org/10.1002/prca.200800149

%A Wright JC
%A Hubbard SJ
%T Recent developments in proteome informatics for mass spectrometry analysis
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%D 2009
%J Comb Chem High Throughput Screen
%P 194-202
%V 12
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%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19199887&dopt=Abstract

%A Harita Y
%A Kurihara H
%A Kosako H
%A Tezuka T
%A Sekine T
%A Igarashi T
%A Ohsawa I
%A Ohta S
%A Hattori S
%T Phosphorylation of nephrin triggers Ca2+ signaling by recruitment and activation of phospholipase C-gamma 1
%0 Journal Article
%D 2009
%J J Biol Chem
%P -
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%8 Jan 29, 2009

%A Martins-de-Souza D
%A Gattaz WF
%A Schmitt A
%A Rewerts C
%A Maccarrone G
%A Dias-Neto E
%A Turck CW
%T Prefrontal cortex shotgun proteome analysis reveals altered calcium homeostasis and immune system imbalance in schizophrenia
%0 Journal Article
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%J Eur Arch Psychiatry Clin Neurosci
%P -
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%8 Jan 22, 2009

%A Luke MacAleese
%A Jonathan Stauber
%A Ron M. A. Heeren
%T Perspectives for imaging mass spectrometry in the proteomics landscape
%0 Journal Article
%D 2009
%J PROTEOMICS
%P 819-834
%V 9
%N 4
%U http://dx.doi.org/10.1002/pmic.200800363

%A Gw�na�l Pottiez
%A Emmanuel Sevin
%A Rom�o Cecchelli
%A Yannis Karamanos
%A Christophe Flahaut
%T Actin, gelsolin and filamin-A are dynamic actors in the cytoskeleton remodelling contributing to the blood brain barrier phenotype
%0 Journal Article
%D 2009
%J PROTEOMICS
%P 1207-1219
%V 9
%N 5
%U http://dx.doi.org/10.1002/pmic.200800503

%A Claudia A. McDonald
%A Jane Y. Yang
%A Vinita Marathe
%A Ten-Yang Yen
%A Bruce A. Macher
%T Combining Results from Lectin Affinity Chromatography and Glycocapture Approaches Substantially Improves the Coverage of the Glycoproteome
%0 Journal Article
%D 2009
%J Mol Cell Proteomics
%P 287-301
%V 8
%N 2
%U http://www.mcponline.org/cgi/content/abstract/8/2/287?etoc

%A Caroline A. Evans
%A Adam Glen
%A Colby L. Eaton
%A St�phane Larr�
%A James W. F. Catto
%A Freddie C. Hamdy
%A Phillip C. Wright
%A Ishtiaq Rehman
%T Prostate cancer proteomics: The urgent need for clinically validated biomarkers
%0 Journal Article
%D 2009
%J PROTEOMICS - CLINICAL APPLICATIONS
%P 197-212
%V 3
%N 2
%U http://dx.doi.org/10.1002/prca.200800154

%A Matsumoto I
%T Proteomics Approach in the Study of the Pathophysiology of Alcohol-Related Brain Damage
%0 Journal Article
%D 2009
%J Alcohol Alcohol
%P 171-6
%V 44
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%U http://dx.doi.org/10.1093/alcalc/agn104

%A Chen X
%A Andrews PC
%T Quantitative proteomics analysis of pancreatic zymogen granule membrane proteins
%0 Journal Article
%D 2009
%J Methods Mol Biol
%P 327-38
%V 528
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%A Mottaz-Brewer HM
%A Norbeck AD
%A Adkins JN
%A Manes NP
%A Ansong C
%A Shi L
%A Rikihisa Y
%A Kikuchi T
%A Wong SW
%A Estep RD
%A Heffron F
%A Pasa-Tolic L
%A Smith RD
%T Optimization of proteomic sample preparation procedures for comprehensive protein characterization of pathogenic systems
%0 Journal Article
%D 2008
%J J Biomol Tech
%P 285-95
%V 19
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%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19183792&dopt=Abstract

%A Wingren C
%A Borrebaeck CA
%T Antibody-based microarrays
%0 Journal Article
%D 2009
%J Methods Mol Biol
%P 57-84
%V 509
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%A McBride WJ
%A Schultz JA
%A Kimpel MW
%A McClintick JN
%A Wang M
%A You J
%A Rodd ZA
%T Differential effects of ethanol in the nucleus accumbens shell of alcohol-preferring (P), alcohol-non-preferring (NP) and Wistar rats: A proteomics study
%0 Journal Article
%D 2009
%J Pharmacol Biochem Behav
%P 304-313
%V 92
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%U http://dx.doi.org/10.1016/j.pbb.2008.12.019

%A Chu-Wei Kuo
%A Chin-Mei Chen
%A Ying-Chu Lee
%A Sin-Tak Chu
%A Kay-Hooi Khoo
%T Glycomics and Proteomics Analyses of Mouse Uterine Luminal Fluid Revealed a Predominance of Lewis Y and X Epitopes on Specific Protein Carriers
%0 Journal Article
%D 2009
%J Mol Cell Proteomics
%P 325-342
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%U http://www.mcponline.org/cgi/content/abstract/8/2/325?etoc

%A Hanes J
%A Zilka N
%A Bartkova M
%A Caletkova M
%A Dobrota D
%A Novak M
%T Rat tau proteome consists of six tau isoforms: Implication for animal models of human tauopathies
%0 Journal Article
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%T Chaperonin Complexes Monitored by Ion Mobility Mass Spectrometry
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%A Lucker J
%A Laszczak M
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%T Generation of a predicted protein database from EST data and application to iTRAQ analyses in grape (Vitis vinifera cv. Cabernet Sauvignon) berries at ripening initiation
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%A Estrada R
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%T Secretome from mesenchymal stem cells induces angiogenesis via Cyr61
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%A Magnus �. Arntzen
%A Christoffer Leif Osland
%A Christopher Rasch-Olsen Raa
%A Reidun Kopperud
%A Stein-Ove D�skeland
%A Aur�lia E. Lewis
%A Clive S. D'Santos
%T POSTMan (POST-translational modification analysis), a software application for PTM discovery
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%D 2009
%J PROTEOMICS
%P 1400-1406
%V 9
%N 5
%U http://dx.doi.org/10.1002/pmic.200800500

%A Blanca Lumbreras
%A Miquel Porta
%A Soledad Marquez
%A Marina Poll�n
%A Lucy A. Parker
%A Ildefonso Hern�ndez-Aguado
%T Sources of error and its control in studies on the diagnostic accuracy of ?-omics? technologies
%0 Journal Article
%D 2009
%J PROTEOMICS - CLINICAL APPLICATIONS
%P 173-184
%V 3
%N 2
%U http://dx.doi.org/10.1002/prca.200800092

%A Tseng MY
%A Liu SY
%A Chen HR
%A Wu YJ
%A Chiu CC
%A Chan PT
%A Chiang WF
%A Liu YC
%A Lu CY
%A Jou YS
%A Chen JY
%T Serine protease inhibitor (SERPIN) B1 promotes oral cancer cell motility and is over-expressed in invasive oral squamous cell carcinoma
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%J Oral Oncol
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%8 Feb 10, 2009

%A Magistroni R
%A Ligabue G
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%A Furci L
%A Leonelli M
%A Manganelli L
%A Masellis M
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%A Albertazzi A
%T Proteomic analysis of urine from proteinuric patients shows a proteolitic activity directed against albumin
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%J Nephrol Dial Transplant
%P -
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%8 Feb 11, 2009

%A Laura Bindila
%A Jasna Peter-Katalini?
%T Chip-mass spectrometry for glycomic studies
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%U http://dx.doi.org/10.1002/mas.20197

%A Zhou J
%A Liang S
%A Fang L
%A Chen L
%A Tang M
%A Xu Y
%A Fu A
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%A Wei Y
%T Quantitative Proteomic Analysis of HepG2 Cells Treated with Quercetin Suggests IQGAP1 Involved in Quercetin-Induced Regulation of Cell Proliferation and Migration
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%J OMICS
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%A Huang ZG
%A Duan GC
%A Fan QT
%A Zhang WD
%A Song CH
%A Huang XY
%A Zhang RG
%T Mutation of cytotoxin-associated gene A affects expressions of antioxidant proteins of Helicobacter pylori
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%J World J Gastroenterol
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%A Logan SM
%A Hui JP
%A Vinogradov E
%A Aubry AJ
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%A Kelly JF
%A Nothaft H
%A Soo EC
%T Identification of novel carbohydrate modifications on Campylobacter jejuni 11168 flagellin using metabolomics-based approaches
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%J FEBS J
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%A Briza P
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%T Immunologic characterization of isoforms of Car b 1 and Que a 1, the major hornbeam and oak pollen allergens
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%J Allergy
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%8 Jan 17, 2009

%A Choi BK
%A Shin YK
%A Lee EY
%A Jeong PY
%A Shim YH
%A Chitwood DJ
%A Paik YK
%T Proteomic analysis of the sterol-mediated signaling pathway in Caenorhabditis elegans
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%J Methods Mol Biol
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%A Ogawa Y
%A Rasband MN
%T Proteomic analysis of optic nerve lipid rafts reveals new paranodal proteins
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%J J Neurosci Res
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%8 Jan 20, 2009

%A Alexander Archakov
%A Yurii Ivanov
%A Andrey Lisitsa
%A Victor Zgoda
%T Biospecific irreversible fishing coupled with atomic force microscopy for detection of extremely low-abundant proteins
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%J PROTEOMICS
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%U http://dx.doi.org/10.1002/pmic.200800598

%A Wang X
%A Ou D
%A Yin J
%A Wu G
%A Wang J
%T Proteomic analysis reveals altered expression of proteins related to glutathione metabolism and apoptosis in the small intestine of zinc oxide-supplemented piglets
%0 Journal Article
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%J Amino Acids
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%8 Jan 29, 2009

%A Carpi D
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%A Airoldi L
%A Fanelli R
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%A Viluksela M
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%T Dioxin-sensitive proteins in differentiating osteoblasts: effects on bone formation in vitro
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%8 Feb 6, 2009

%A Sung JH
%A Cho EH
%A Kim MO
%A Koh PO
%T Identification of proteins differentially expressed by melatonin treatment in cerebral ischemic injury - a proteomics approach
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%8 Jan 31, 2009

%A Nitin Agarwal
%A Eric V. Shusta
%T Multiplex expression cloning of blood-brain barrier membrane proteins
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%J PROTEOMICS
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%U http://dx.doi.org/10.1002/pmic.200800368

%A Glatter T
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%T An integrated workflow for charting the human interaction proteome: insights into the PP2A system
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%A Jing-Jing Li
%A Robert Z. Qi
%A Gary Kar Ho Ng
%A Dong Xie
%T Proteomics in gastric cancer research: Benefits and challenges
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%J PROTEOMICS - CLINICAL APPLICATIONS
%P 185-196
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%U http://dx.doi.org/10.1002/prca.200800151

%A Xunbao Duan
%A Fran�ois Berthiaume
%A David M. Yarmush
%A Martin L. Yarmush
%T Dissimilar hepatic protein expression profiles during the acute and flow phases following experimental thermal injury
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%J PROTEOMICS
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%U http://dx.doi.org/10.1002/pmic.200700427

%A Jiang H
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%A Liu G
%A Liu H
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%A Cheng J
%T Increased urinary excretion of orosomucoid is a risk predictor of diabetic nephropathy
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%J Nephrology (Carlton)
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%8 Jan 8, 2009

%A Mas VR
%A Maluf DG
%A Archer KJ
%A Yanek K
%A Bornstein K
%A Fisher RA
%T Proteomic analysis of HCV cirrhosis and HCV-induced HCC: identifying biomarkers for monitoring HCV-cirrhotic patients awaiting liver transplantation
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%J Transplantation
%P 143-52
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%A Korfali N
%A Fairley EA
%A Swanson SK
%A Florens L
%A Schirmer EC
%T Use of sequential chemical extractions to purify nuclear membrane proteins for proteomics identification
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%J Methods Mol Biol
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%A Xiaodan Su
%A David M. Lucas
%A Liwen Zhang
%A Hua Xu
%A Vlad Zabrouskov
%A Melanie E. Davis
%A Amy R. Knapp
%A Donn C. Young
%A Philip R. O. Payne
%A Mark R. Parthun
%A Guido Marcucci
%A Michael R. Grever
%A John C. Byrd
%A Michael A. Freitas
%T Validation of an LC-MS based approach for profiling histones in chronic lymphocytic leukemia
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%J PROTEOMICS
%P 1197-1206
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%U http://dx.doi.org/10.1002/pmic.200800333

%A Quanhui Wang
%A Huiming Han
%A Yanfen Xue
%A Zhong Qian
%A Bo Meng
%A Fuli Peng
%A Zhuowei Wang
%A Wei Tong
%A Chuanqi Zhou
%A Qian Wang
%A Yonghao Guo
%A Gang Li
%A Siqi Liu
%A Yanhe Ma
%T Exploring membrane and cytoplasm proteomic responses of Alkalimonas amylolytica N10 to different external pHs with combination strategy of de novo peptide sequencing
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%J PROTEOMICS
%P 1254-1273
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%U http://dx.doi.org/10.1002/pmic.200800244

%A Franz-Georg Hanisch
%A Sebastian Teitz
%A Tilo Schwientek
%A Stefan M�ller
%T Chemical de-O-glycosylation of glycoproteins for application in LC-based proteomics
%0 Journal Article
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%J PROTEOMICS
%P 710-719
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%U http://dx.doi.org/10.1002/pmic.200800492

%A Honda S
%A Selker E
%T Tools for Fungal Proteomics: Multifunctional Neurospora Vectors for Gene Replacement, Protein Expression and Protein Purification
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%J Genetics
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%8 Jan 26, 2009

%A Pedro M. Santos
%A T�nia Sim�es
%A Isabel S�-Correia
%T Insights into yeast adaptive response to the agricultural fungicide mancozeb: A toxicoproteomics approach
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%J PROTEOMICS
%P 657-670
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%U http://dx.doi.org/10.1002/pmic.200800452

%A Hornshoj H
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%A Conley LN
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%A Hedegaard J
%A Panitz F
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%T Transcriptomic and proteomic profiling of two porcine tissues using high-throughput technologies
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%A Goto A
%A Wang YL
%A Kabuta T
%A Setsuie R
%A Osaka H
%A Sawa A
%A Ishiura S
%A Wada K
%T Proteomic and histochemical analysis of proteins involved in the dying-back-type of axonal degeneration in the gracile axonal dystrophy (gad) mouse
%0 Journal Article
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%J Neurochem Int
%P 330-338
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%U http://dx.doi.org/10.1016/j.neuint.2008.12.012

%A Webb-Robertson BJ
%A McCue LA
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%A Wunschel DS
%A Varnum SM
%A Hu JZ
%A Isern NG
%A Buchko GW
%A Mcateer K
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%A Liggitt D
%A Frevert CW
%T A Bayesian integration model of high-throughput proteomics and metabolomics data for improved early detection of microbial infections
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%J Pac Symp Biocomput
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%A Schiffer E
%A Mischak H
%A Zimmerli LU
%T Proteomics in Gerontology: Current Applications and Future Aspects - A Mini-Review
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%J Gerontology
%P 123-37
%V 55
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%U http://dx.doi.org/10.1159/000191653

%A Yusuke Miyao
%A Kenji Sagae
%A Rune Saetre
%A Takuya Matsuzaki
%A Jun'ichi Tsujii
%T Evaluating contributions of natural language parsers to protein-protein interaction extraction
%0 Journal Article
%D 2009
%J Bioinformatics
%P 394-400
%V 25
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%U http://dx.doi.org/10.1093/bioinformatics/btn631

%A Liang S
%A Yu Y
%A Yang P
%A Gu S
%A Xue Y
%A Chen X
%T Analysis of the protein complex associated with 14-3-3 epsilon by a deuterated-leucine labeling quantitative proteomics strategy
%0 Journal Article
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%J J Chromatogr B
%P 627-34
%V 877
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%U http://dx.doi.org/10.1016/j.jchromb.2009.01.023

%A Christian Legros
%A Catherine Guette
%A Marie-France Martin-Eauclaire
%A Max Goyffon
%A Jeanine Tortajada
%T Affinity capture using chimeric membrane proteins bound to magnetic beads for rapid ligand screening by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry
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%J Rapid Communications in Mass Spectrometry
%P 745-755
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%U http://dx.doi.org/10.1002/rcm.3939

%A Park SK
%A Jin ES
%A Lee MY
%T Expression and antioxidant enzymes in Chaetoceros neogracile, an antarctic alga
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%P 351-61
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%A Haruhiko Kamada
%A Tim Fugmann
%A Dario Neri
%A Christoph Roesli
%T Improved protein sequence coverage by on resin deglycosylation and cysteine modification for biomarker discovery
%0 Journal Article
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%J PROTEOMICS
%P 783-787
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%U http://dx.doi.org/10.1002/pmic.200800466

%A Martin V�disch
%A Daniela Albrecht
%A Franziska Le�ing
%A Andr� D. Schmidt
%A Robert Winkler
%A Reinhard Guthke
%A Axel A. Brakhage
%A Olaf Kniemeyer
%T Two-dimensional proteome reference maps for the human pathogenic filamentous fungus Aspergillus fumigatus
%0 Journal Article
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%J PROTEOMICS
%P 1407-1415
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%U http://dx.doi.org/10.1002/pmic.200800394

%A Sakamoto K
%A Sato Y
%A Shinka T
%A Sei M
%A Nomura I
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%A Ewis AA
%A Nakahori Y
%T Proteasome Subunits mRNA Expressions Correlate With Male BMI: Implications for a Role in Obesity
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%J Obesity (Silver Spring)
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%8 Jan 22, 2009

%A Fusaro VA
%A Mani DR
%A Mesirov JP
%A Carr SA
%T Prediction of high-responding peptides for targeted protein assays by mass spectrometry
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%J Nat Biotechnol
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%U http://dx.doi.org/10.1038/nbt.1524

%A Everberg H
%A Gustavsson N
%A Tjerneld F
%T Extraction of yeast mitochondrial membrane proteins by solubilization and detergent/polymer aqueous two-phase partitioning
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%A Huimin Bao
%A Ting Lui
%A Luyan Zhang
%A Gang Chen
%T Infrared-assisted proteolysis using trypsin-immobilized silica microspheres for peptide mapping
%0 Journal Article
%D 2009
%J PROTEOMICS
%P 1114-1117
%V 9
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%U http://dx.doi.org/10.1002/pmic.200800659

%A M. Amine Badri
%A Daniel Rivard
%A Karine Coenen
%A Dominique Michaud
%T Unintended molecular interactions in transgenic plants expressing clinically useful proteins: The case of bovine aprotinin traveling the potato leaf cell secretory pathway
%0 Journal Article
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%J PROTEOMICS
%P 746-756
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%U http://dx.doi.org/10.1002/pmic.200700234

%A Malagoli D
%A Boraldi F
%A Annovi G
%A Quaglino D
%A Ottaviani E
%T New insights into autophagic cell death in the gypsy moth Lymantria dispar: a proteomic approach
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%J Cell Tissue Res
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%8 Jan 30, 2009

%A Hutter G
%A Letsch A
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%A Poland J
%A Sinha P
%A Thiel E
%A Hofmann WK
%T High correlation of the proteome patterns in bone marrow and peripheral blood blast cells in patients with acute myeloid leukemia
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%A Moon JH
%A Yoon SH
%A Kim MS
%T Temperature of Peptide Ions Generated by Matrix-Assisted Laser Desorption Ionization and Their Dissociation Kinetic Parameters
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%A Valente AX
%A Roberts SB
%A Buck GA
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%T Functional organization of the yeast proteome by a yeast interactome map
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%8 Jan 21, 2009

%A Culwell TF
%A Thulin CD
%A Merrell KJ
%A Graves SW
%T Influence of diet on the proteome of Drosophila melanogaster as assessed by two-dimensional gel electrophoresis and capillary liquid chromatography-mass spectrometry: the hamburger effect revisited
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%A Bereszczak JZ
%A Brancia FL
%T Offline and online liquid chromatography mass spectrometry in quantitative proteomics
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%J Comb Chem High Throughput Screen
%P 185-93
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%A Foster LJ
%T Moving closer to the lipid raft proteome using quantitative proteomics
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%A Goode RJ
%A Simpson RJ
%T Purification of basolateral integral membrane proteins by cationic colloidal silica-based apical membrane subtraction
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%A Hirabayashi A
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%A Umeda M
%A Bando T
%A Orii Y
%T Probe for label-free quantitative analysis in liquid chromatography/mass spectrometry
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%A Gibbs HL
%A Sanz L
%A Calvete JJ
%T Snake Population Venomics: Proteomics-Based Analyses of Individual Variation Reveals Significant Gene Regulation Effects on Venom Protein Expression in Sistrurus Rattlesnakes
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%J J Mol Evol
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%A Li WH
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%A Fang F
%T Proteomic analysis of differently expressed proteins in human hepatocellular carcinoma cell lines HepG2 with transfecting hepatitis B virus X gene
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%J Chin Med J (Engl)
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%A Lorenzo O
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%A Egido J
%A Tuñón J
%T The proteomic approach in the development of prognostic biomarkers in atherothrombosis
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%J Recent Pat Cardiovasc Drug Discov
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%A Gianluca Picariello
%A Pasquale Ferranti
%A Simonetta Caira
%A Olga Fierro
%A Lina Chianese
%A Francesco Addeo
%T Fast screening and quantitative evaluation of internally deleted goat ?s1-casein variants by mass spectrometric detection of the signature peptides
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%J Rapid Communications in Mass Spectrometry
%P 775-787
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%A Cumming RC
%T Analysis of global and specific changes in the disulfide proteome using redox two-dimensional polyacrylamide gel electrophoresis
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%A Nirmalan NJ
%A Harnden P
%A Selby PJ
%A Banks RE
%T Development and validation of a novel protein extraction methodology for quantitation of protein expression in formalin-fixed paraffin-embedded tissues using western blotting
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%A Naito Y
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%A Okada H
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%A Uchiyama K
%A Kuroda M
%A Handa O
%A Kokura S
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%T Expression of inducible nitric oxide synthase and nitric oxide-modified proteins in Helicobacter pylori-associated atrophic gastric mucosa
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%J J Gastroenterol Hepatol
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%A Hanrieder J
%A Zuberovic A
%A Bergquist J
%T Surface modified capillary electrophoresis combined with in solution isoelectric focusing and MALDI-TOF/TOF MS: A gel-free multidimensional electrophoresis approach for proteomic profiling-Exemplified on human follicular fluid
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%A Poetsch A
%A Schlüsener D
%A Florizone C
%A Eltis L
%A Menzel C
%A Rögner M
%A Steinert K
%A Roth U
%T Improved Identification of Membrane Proteins by MALDI-TOF MS/MS Using Vacuum Sublimated Matrix Spots on an Ultraphobic Chip Surface
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%J J Biomol Tech
%P 129-38
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%A Liu Z
%A Bartlow P
%A Varakala R
%A Beitle R
%A Koepsel R
%A Ataai MM
%T Use of proteomics for design of a tailored host cell for highly efficient protein purification
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%J J Chromatogr A
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%V 1216
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%U http://dx.doi.org/10.1016/j.chroma.2009.01.020

%A Birgit Kersten
%A Ganesh Kumar Agrawal
%A Pawel Durek
%A Jost Neigenfind
%A Waltraud Schulze
%A Dirk Walther
%A Randeep Rakwal
%T Plant phosphoproteomics: An update
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%D 2009
%J PROTEOMICS
%P 964-988
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%U http://dx.doi.org/10.1002/pmic.200800548

%A Dudley JT
%A Butte AJ
%T Identification of discriminating biomarkers for human disease using integrative network biology
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%J Pac Symp Biocomput
%P 27-38
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%A Petra Van Damme
%A Sebastian Maurer-Stroh
%A Kim Plasman
%A Joost Van Durme
%A Niklaas Colaert
%A Evy Timmerman
%A Pieter-Jan De Bock
%A Marc Goethals
%A Frederic Rousseau
%A Joost Schymkowitz
%A Joel Vandekerckhove
%A Kris Gevaert
%T Analysis of Protein Processing by N-terminal Proteomics Reveals Novel Species-specific Substrate Determinants of Granzyme B Orthologs
%0 Journal Article
%D 2009
%J Mol Cell Proteomics
%P 258-272
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%A Maura Ferri
%A Annalisa Tassoni
%A Marina Franceschetti
%A Laura Righetti
%A Mike J. Naldrett
%A Nello Bagni
%T Chitosan treatment induces changes of protein expression profile and stilbene distribution in Vitis vinifera cell suspensions
%0 Journal Article
%D 2009
%J PROTEOMICS
%P 610-624
%V 9
%N 3
%U http://dx.doi.org/10.1002/pmic.200800386

%A Ching-Yu Lin
%A Vinchi Wang
%A Hao-Ai Shui
%A Rong-Huay Juang
%A Ai-Ling Hour
%A Pei-Sing Chen
%A Hui-Ming Huang
%A Szu-Yu Wu
%A Jen-Chieh Lee
%A Tzung-Lin Tsai
%A Han-Min Chen
%T A comprehensive evaluation of imidazole-zinc reverse stain for current proteomic researches
%0 Journal Article
%D 2009
%J PROTEOMICS
%P 696-709
%V 9
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%U http://dx.doi.org/10.1002/pmic.200700470

%A Yang Y
%A Adelstein SJ
%A Kassis AI
%T Target discovery from data mining approaches
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%D 2009
%J Drug Discov Today
%P 147-54
%V 14
%N 3-4
%U http://dx.doi.org/10.1016/j.drudis.2008.12.005

%A Sheila Ons
%A Florian Richter
%A Henning Urlaub
%A Rolando Rivera Pomar
%T The neuropeptidome of Rhodnius prolixus brain
%0 Journal Article
%D 2009
%J PROTEOMICS
%P 788-792
%V 9
%N 3
%U http://dx.doi.org/10.1002/pmic.200800499

%A Grisk O
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%A Ciecholewski S
%A Schlüter T
%A Klöting I
%A Schmidt H
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%A Steil L
%A Gauer S
%A Jedlitschky G
%A Schwab M
%A Geisslinger G
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%A Kroemer HK
%A Rettig R
%T Multidrug resistance-related protein 2 genotype of the donor affects kidney graft function
%0 Journal Article
%D 2009
%J Pharmacogenet Genomics
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%8 Feb 11, 2009

%A Peirce MJ
%A Cope AP
%A Wait R
%T Proteomic analysis of the lymphocyte plasma membrane using cell surface biotinylation and solution-phase isoelectric focusing
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%J Methods Mol Biol
%P 135-40
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%A Hirano Y
%A Ishii K
%A Kumeta M
%A Furukawa K
%A Takeyasu K
%A Horigome T
%T Proteomic and targeted analytical identification of BXDC1 and EBNA1BP2 as dynamic scaffold proteins in the nucleolus
%0 Journal Article
%D 2009
%J Genes Cells
%P 155-66
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%A Tan Y
%A Bideshi DK
%A Johnson JJ
%A Bigot Y
%A Federici BA
%T Proteomic analysis of the Spodoptera frugiperda ascovirus 1a virion reveals 21 proteins
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%J J Gen Virol
%P 359-65
%V 90
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%A Rafael Oliva
%A Sara de Mateo
%A Josep Maria Estanyol
%T Sperm cell proteomics
%0 Journal Article
%D 2009
%J PROTEOMICS
%P 1004-1017
%V 9
%N 4
%U http://dx.doi.org/10.1002/pmic.200800588

%A Mauri P
%A Dehò G
%T Chapter 6 A Proteomic Approach to the Analysis of RNA Degradosome Composition in Escherichia coli
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%A Hogan MC
%A Manganelli L
%A Woollard JR
%A Masyuk AI
%A Masyuk TV
%A Tammachote R
%A Huang BQ
%A Leontovich AA
%A Beito TG
%A Madden BJ
%A Charlesworth MC
%A Torres VE
%A Larusso NF
%A Harris PC
%A Ward CJ
%T Characterization of PKD Protein-Positive Exosome-Like Vesicles
%0 Journal Article
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%J J Am Soc Nephrol
%P 278-88
%V 20
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%U http://dx.doi.org/10.1681/ASN.2008060564

%A Theodore Alexandrov
%A Jens Decker
%A Bart Mertens
%A Andre M. Deelder
%A Rob A. E. M. Tollenaar
%A Peter Maass
%A Herbert Thiele
%T Biomarker discovery in MALDI-TOF serum protein profiles using discrete wavelet transformation
%0 Journal Article
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%J Bioinformatics
%P 643-649
%V 25
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%U http://dx.doi.org/10.1093/bioinformatics/btn662

%A Yanofsky CM
%A Kearney RE
%A Lesimple S
%A Bergeron JJ
%A Boismenu D
%A Carrillo B
%A Bell AW
%T A Bayesian approach to peptide identification using Accurate Mass and Time tags from LC-FTICR-MS proteomics experiments
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%J Conf Proc IEEE Eng Med Biol Soc
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%A Gelosa P
%A Banfi C
%A Brioschi M
%A Nobili E
%A Gianella A
%A Guerrini U
%A Pignieri A
%A Tremoli E
%A Sironi L
%T S 35171 exerts protective effects in spontaneously hypertensive stroke-prone rats by preserving mitochondrial function
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%J Eur J Pharmacol
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%V 604
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%U http://dx.doi.org/10.1016/j.ejphar.2008.12.027

%A Yi Yang
%A Raghothama Chaerkady
%A Michael A. Beer
%A Joshua T. Mendell
%A Akhilesh Pandey
%T Identification of miR-21 targets in breast cancer cells using a quantitative proteomic approach
%0 Journal Article
%D 2009
%J PROTEOMICS
%P 1374-1384
%V 9
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%U http://dx.doi.org/10.1002/pmic.200800551

%A Free RB
%A Hazelwood LA
%A Sibley DR
%T Identifying novel protein-protein interactions using co-immunoprecipitation and mass spectroscopy
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%A Geuijen CA
%A Bakker AQ
%A de Kruif J
%T Identification of target membrane proteins as detected by phage antibodies
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%J Methods Mol Biol
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%A Shen Hu
%A David T. Wong
%T Lectin microarray
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%J PROTEOMICS - CLINICAL APPLICATIONS
%P 148-154
%V 3
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%U http://dx.doi.org/10.1002/prca.200800153

%A Bansal R
%A Deobald LA
%A Crawford RL
%A Paszczynski AJ
%T Proteomic detection of proteins involved in perchlorate and chlorate metabolism
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%J Biodegradation
%P -
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%8 Feb 7, 2009

%A Arjunan S
%A Reinartz M
%A Emde B
%A Zanger K
%A Schrader J
%T Limitations of the Colloidal Silica Method in Mapping the Endothelial Plasma Membrane Proteome of the Mouse Heart
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%J Cell Biochem Biophys
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%8 Jan 28, 2009

%A Jung-Il Chae
%A Janghwan Kim
%A Sun-Mi Woo
%A Hyo-Won Han
%A Young Keun Cho
%A Keon-Bong Oh
%A Ki-Hoan Nam
%A Yong-Kook Kang
%T Cytoskeleton-associated proteins are enriched in human embryonic-stem cell-derived neuroectodermal spheres
%0 Journal Article
%D 2009
%J PROTEOMICS
%P 1128-1141
%V 9
%N 5
%U http://dx.doi.org/10.1002/pmic.200800234

%A Fiorini RN
%A Nicoud IB
%A Fiorini JH
%T The use of genomics and proteomics for the recognition of transplantation rejection of solid organs
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%J Recent Pat DNA Gene Seq
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%A Christin Stegemann
%A Alexander Kolobov Jr.
%A Yulia F. Leonova
%A Daniel Knappe
%A Olga Shamova
%A Tatiana V. Ovchinnikova
%A Vladimir N. Kokryakov
%A Ralf Hoffmann
%T Isolation, purification and de novo sequencing of TBD-1, the first beta-defensin from leukocytes of reptiles
%0 Journal Article
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%J PROTEOMICS
%P 1364-1373
%V 9
%N 5
%U http://dx.doi.org/10.1002/pmic.200800569

%A Matharoo-Ball B
%A Miles AK
%A Creaser CS
%A Ball G
%A Rees R
%T Serum biomarker profiling in cancer studies: a question of standardisation?
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%J Vet Comp Oncol
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%A Wu Y
%A Xie J
%A Wang F
%A Chen Z
%T Separation of small molecular peptides with same amino acid composition but different sequences by capillary electrophoresis
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%J J Sep Sci
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%U http://dx.doi.org/10.1002/jssc.200800513

%A Nothwang HG
%A Schindler J
%T Two-Dimensional Separation of Membrane Proteins by 16-BAC-SDS-PAGE
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%A Jiang YJ
%A Sun Q
%A Fang XS
%A Wang X
%T Comparative Mitochondrial Proteomic Analysis of Raji Cells Exposed to Adriamycin
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%J Mol Med
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%8 Feb 11, 2009

%A Hinou H
%A Nishimura S
%T Mechanism-based probing, characterization, and inhibitor design of glycosidases and glycosyltransferases
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%J Curr Top Med Chem
%P 106-16
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%A David J. Harvey
%T Analysis of carbohydrates and glycoconjugates by matrix-assisted laser desorption/ionization mass spectrometry: An update for 2003-2004
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%J Mass Spectrometry Reviews
%P 273-361
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%U http://dx.doi.org/10.1002/mas.20192

%A Breitling F
%A Felgenhauer T
%A Nesterov A
%A Lindenstruth V
%A Stadler V
%A Bischoff FR
%T Particle-Based Synthesis of Peptide Arrays
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%J Chembiochem
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%8 Feb 3, 2009

%A Mölleken C
%A Sitek B
%A Henkel C
%A Poschmann G
%A Sipos B
%A Wiese S
%A Warscheid B
%A Broelsch C
%A Reiser M
%A Friedman SL
%A Tornøe I
%A Schlosser A
%A Klöppel G
%A Schmiegel W
%A Meyer HE
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%T Detection of novel biomarkers of liver cirrhosis by proteomic analysis
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%J Hepatology
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%8 Dec 2, 2008

%A Mazanec K
%A Bobalova J
%A Slais K
%T Divergent flow isoelectric focusing: fast and efficient method for protein sample preparation for mass spectrometry
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%U http://dx.doi.org/10.1007/s00216-009-2600-8

%A Li M
%A Ma YB
%A Gao HQ
%A Li BY
%A Cheng M
%A Xu L
%A Li XL
%A Li XH
%T A novel approach of proteomics to study the mechanism of action of grape seed proanthocyanidin extracts on diabetic retinopathy in rats
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%J Chin Med J (Engl)
%P 2544-52
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%A Li N
%A Lv J
%A Niu DK
%T Low Contents of Carbon and Nitrogen in Highly Abundant Proteins: Evidence of Selection for the Economy of Atomic Composition
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%J J Mol Evol
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%8 Feb 10, 2009

%A Jelena Zlatkovic
%A D. Kent Arrell
%A Garvan C. Kane
%A Takashi Miki
%A Susumu Seino
%A Andre Terzic
%T Proteomic profiling of KATP channel-deficient hypertensive heart maps risk for maladaptive cardiomyopathic outcome
%0 Journal Article
%D 2009
%J PROTEOMICS
%P 1314-1325
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%U http://dx.doi.org/10.1002/pmic.200800718

%A Kalpana Lal
%A Judith Helena Prieto
%A Elizabeth Bromley
%A Sanya J. Sanderson
%A John R. Yates III
%A Jonathan M. Wastling
%A Fiona M. Tomley
%A Robert E. Sinden
%T Characterisation of Plasmodium invasive organelles; an ookinete microneme proteome
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%J PROTEOMICS
%P 1142-1151
%V 9
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%U http://dx.doi.org/10.1002/pmic.200800404

%A Butler GS
%A Dean RA
%A Smith D
%A Overall CM
%T Membrane protease degradomics: proteomic identification and quantification of cell surface protease substrates
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%J Methods Mol Biol
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%A Brea D
%A Sobrino T
%A Blanco M
%A Fraga M
%A Agulla J
%A Rodríguez-Yáñez M
%A Rodríguez-González R
%A Pérez de la Ossa N
%A Leira R
%A Forteza J
%A Dávalos A
%A Castillo J
%T Usefulness of haptoglobin and serum amyloid A proteins as biomarkers for atherothrombotic ischemic stroke diagnosis confirmation
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%8 Dec 30, 2008

%A Wai-Hoe L
%A Wing-Seng L
%A Ismail Z
%A Lay-Harn G
%T Proteomics and Detection of Uromodulin in First-time Renal Calculi Patients and Recurrent Renal Calculi Patients
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%8 Jan 15, 2009

%A Stefan Zimmermann
%A Martin L. Biniossek
%A Milena Pantic
%A Dietmar Pfeifer
%A Hendrik Veelken
%A Uwe M. Martens
%T Proteomic profiling of tumor cells after induction of telomere dysfunction
%0 Journal Article
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%J PROTEOMICS
%P 521-534
%V 9
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%U http://dx.doi.org/10.1002/pmic.200800471

%A Lynda J. Donald
%A Vladimir M. Collado
%A Jamie J. Galka
%A Joe D. O'Neil
%A Harry W. Duckworth
%A Peter C. Loewen
%A Kenneth G. Standing
%T Urea as a protein destabilizing agent in electrospray ionisation
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%J Rapid Communications in Mass Spectrometry
%P 788-792
%V 23
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%U http://dx.doi.org/10.1002/rcm.3941

%A Gross V
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%A Kwan AT
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%T Tissue fractionation by hydrostatic pressure cycling technology: the unified sample preparation technique for systems biology studies
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%J J Biomol Tech
%P 189-99
%V 19
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%A Pradeep R. Dumpala
%A Mark L. Lawrence
%A Attila Karsi
%T Proteome analysis of Edwardsiella ictaluri
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%J PROTEOMICS
%P 1353-1363
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%U http://dx.doi.org/10.1002/pmic.200800652

%A Le Moan N
%A Tacnet F
%A Toledano MB
%T Protein-thiol oxidation, from single proteins to proteome-wide analyses
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%A Baer AS
%A Syed YA
%A Kang SU
%A Mitteregger D
%A Vig R
%A Ffrench-Constant C
%A Franklin RJ
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%A Lubec G
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%T Myelin-mediated inhibition of oligodendrocyte precursor differentiation can be overcome by pharmacological modulation of Fyn-RhoA and protein kinase C signalling
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%J Brain
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%A Nath AK
%A Krauthammer M
%A Li P
%A Davidov E
%A Butler LC
%A Copel J
%A Katajamaa M
%A Oresic M
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%A Snyder M
%A Madri JA
%T Proteomic-based detection of a protein cluster dysregulated during cardiovascular development identifies biomarkers of congenital heart defects
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%A McCarthy FM
%A Cooksey AM
%A Burgess SC
%T Sequential detergent extraction prior to mass spectrometry analysis
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%A Yamada L
%A Saito T
%A Taniguchi H
%A Sawada H
%A Harada Y
%T Comprehensive egg-coat proteome of an ascidian Ciona intestinalis reveals gamete recognition molecules involved in self-sterility
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%J J Biol Chem
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%A Falick AM
%A Kowalak JA
%A Lane WS
%A Phinney BS
%A Turck CW
%A Weintraub ST
%A West KA
%A Neubert TA
%T ABRF-PRG05: De Novo Peptide Sequence Determination
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%J J Biomol Tech
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%A Andrea Raab
%A Barbara Pioselli
%A Caroline Munro
%A Jane Thomas-Oates
%A J�rg Feldmann
%T Evaluation of gel electrophoresis conditions for the separation of metal-tagged proteins with subsequent laser ablation ICP-MS detection
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%D 2009
%J ELECTROPHORESIS
%P 303-314
%V 30
%N 2
%U http://dx.doi.org/10.1002/elps.200800264

%A Soile Tuomela
%A Kirsi J. Rautajoki
%A Robert Moulder
%A Tuula A. Nyman
%A Riitta Lahesmaa
%T Identification of novel Stat6 regulated proteins in IL-4-treated mouse lymphocytes
%0 Journal Article
%D 2009
%J PROTEOMICS
%P 1087-1098
%V 9
%N 4
%U http://dx.doi.org/10.1002/pmic.200800161

%A Mitra SK
%A Goshe MB
%T Cysteinyl-tagging of integral membrane proteins for proteomic analysis using liquid chromatography-tandem mass spectrometry
%0 Journal Article
%D 2009
%J Methods Mol Biol
%P 311-26
%V 528
%N 
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19153702&dopt=Abstract

%A Ditzen C
%A Varadarajulu J
%A Czibere L
%A Gonik M
%A Targosz BS
%A Hambsch B
%A Bettecken T
%A Keßler MS
%A Frank E
%A Bunck M
%A Teplytska L
%A Erhardt A
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%A Müller-Myhsok B
%A Landgraf R
%A Turck CW
%T Proteomic-based genotyping in a mouse model of trait anxiety exposes disease-relevant pathways
%0 Journal Article
%D 2009
%J Mol Psychiatry
%P -
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%U http://dx.doi.org/10.1038/mp.2008.146
%8 Jan 13, 2009

%A Kline KG
%A Wu CC
%T MudPIT Analysis: Application to Human Heart Tissue
%0 Journal Article
%D 2009
%J Methods Mol Biol
%P 281-93
%V 528
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%A Thompson JD
%A Schaeffer-Reiss C
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%T Functional proteomics. Preface
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%D 2008
%J Methods Mol Biol
%P v-vii
%V 484
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%A Chun Zhao
%A Xue-Jiang Guo
%A Zhong-Hua Shi
%A Fu-Qiang Wang
%A Xiao-Yan Huang
%A Ran Huo
%A Hui Zhu
%A Xin-Ru Wang
%A Jia-Yin Liu
%A Zuo-Min Zhou
%A Jia-Hao Sha
%T Role of translation by mitochondrial-type ribosomes during sperm capacitation: An analysis based on a proteomic approach
%0 Journal Article
%D 2009
%J PROTEOMICS
%P 1385-1399
%V 9
%N 5
%U http://dx.doi.org/10.1002/pmic.200800353

%A Simon Rogers
%A Richard A. Scheltema
%A Mark Girolami
%A Rainer Breitling
%T Probabilistic assignment of formulas to mass peaks in metabolomics experiments
%0 Journal Article
%D 2009
%J Bioinformatics
%P 512-518
%V 25
%N 4
%U http://dx.doi.org/10.1093/bioinformatics/btn642

%A Elena Wiederhold
%A Tejas Gandhi
%A Hjalmar P. Permentier
%A Rainer Breitling
%A Bert Poolman
%A Dirk J. Slotboom
%T The Yeast Vacuolar Membrane Proteome
%0 Journal Article
%D 2009
%J Mol Cell Proteomics
%P 380-392
%V 8
%N 2
%U http://www.mcponline.org/cgi/content/abstract/8/2/380?etoc

%A Krenkova J
%A Svec F
%T Less common applications of monoliths: IV. Recent developments in immobilized enzyme reactors for proteomics and biotechnology
%0 Journal Article
%D 2009
%J J Sep Sci
%P 706-718
%V 32
%N 5-6
%U http://dx.doi.org/10.1002/jssc.200800641

%A Altraja S
%A Jaama J
%A Valk E
%A Altraja A
%T Changes in the proteome of human bronchial epithelial cells following stimulation with leucotriene E4 and transforming growth factor-beta1
%0 Journal Article
%D 2009
%J Respirology
%P 39-45
%V 14
%N 1
%U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=19144047&dopt=Abstract

%A Rosenzweig CN
%A Zhang Z
%A Sun X
%A Sokoll LJ
%A Osborne K
%A Partin AW
%A Chan DW
%T Predicting Prostate Cancer Biochemical Recurrence Using a Panel of Serum Proteomic Biomarkers
%0 Journal Article
%D 2009
%J J Urol
%P 1407-14
%V 181
%N 3
%U http://dx.doi.org/10.1016/j.juro.2008.10.142